Multiple sequence alignment - TraesCS6D01G158500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G158500 chr6D 100.000 2681 0 0 1 2681 135112808 135115488 0.000000e+00 4951.0
1 TraesCS6D01G158500 chr6D 85.339 723 73 14 1975 2680 950959 950253 0.000000e+00 717.0
2 TraesCS6D01G158500 chr6A 95.484 1218 40 6 714 1928 176573491 176574696 0.000000e+00 1930.0
3 TraesCS6D01G158500 chr6B 93.569 1244 48 17 738 1966 233693738 233694964 0.000000e+00 1825.0
4 TraesCS6D01G158500 chr6B 84.840 719 92 4 1976 2677 543846217 543846935 0.000000e+00 708.0
5 TraesCS6D01G158500 chrUn 86.050 724 68 14 1974 2680 100223398 100222691 0.000000e+00 747.0
6 TraesCS6D01G158500 chrUn 85.457 722 86 10 1974 2677 40585262 40585982 0.000000e+00 734.0
7 TraesCS6D01G158500 chrUn 85.042 722 89 11 1974 2677 215033350 215032630 0.000000e+00 717.0
8 TraesCS6D01G158500 chrUn 83.518 722 94 13 1976 2677 2548405 2547689 0.000000e+00 651.0
9 TraesCS6D01G158500 chr5D 85.793 725 71 13 1973 2680 88473453 88472744 0.000000e+00 739.0
10 TraesCS6D01G158500 chr5D 85.035 715 88 9 1980 2677 61868659 61867947 0.000000e+00 710.0
11 TraesCS6D01G158500 chr5D 84.924 723 76 14 1972 2677 294346790 294347496 0.000000e+00 701.0
12 TraesCS6D01G158500 chr5D 84.444 720 93 9 1974 2677 325659062 325659778 0.000000e+00 691.0
13 TraesCS6D01G158500 chr2B 85.160 721 89 9 1974 2677 153887866 153888585 0.000000e+00 723.0
14 TraesCS6D01G158500 chr2B 76.667 180 31 10 464 641 20312073 20311903 3.680000e-14 89.8
15 TraesCS6D01G158500 chr4D 85.118 719 90 3 1975 2676 380558434 380559152 0.000000e+00 719.0
16 TraesCS6D01G158500 chr4D 84.882 721 92 3 1974 2677 53481155 53480435 0.000000e+00 712.0
17 TraesCS6D01G158500 chr4D 84.807 724 78 13 1974 2680 502030572 502029864 0.000000e+00 699.0
18 TraesCS6D01G158500 chr2D 83.906 727 78 11 1972 2680 498806048 498806753 0.000000e+00 658.0
19 TraesCS6D01G158500 chr7D 86.949 590 60 3 2103 2675 568946038 568945449 0.000000e+00 647.0
20 TraesCS6D01G158500 chr7D 83.470 611 87 11 1079 1682 504770064 504769461 8.380000e-155 556.0
21 TraesCS6D01G158500 chr1B 81.644 730 94 21 1974 2679 659377411 659376698 1.080000e-158 569.0
22 TraesCS6D01G158500 chr7B 81.173 733 109 18 966 1682 532657230 532656511 1.800000e-156 562.0
23 TraesCS6D01G158500 chr7A 86.585 492 66 0 1191 1682 572326366 572325875 6.530000e-151 544.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G158500 chr6D 135112808 135115488 2680 False 4951 4951 100.000 1 2681 1 chr6D.!!$F1 2680
1 TraesCS6D01G158500 chr6D 950253 950959 706 True 717 717 85.339 1975 2680 1 chr6D.!!$R1 705
2 TraesCS6D01G158500 chr6A 176573491 176574696 1205 False 1930 1930 95.484 714 1928 1 chr6A.!!$F1 1214
3 TraesCS6D01G158500 chr6B 233693738 233694964 1226 False 1825 1825 93.569 738 1966 1 chr6B.!!$F1 1228
4 TraesCS6D01G158500 chr6B 543846217 543846935 718 False 708 708 84.840 1976 2677 1 chr6B.!!$F2 701
5 TraesCS6D01G158500 chrUn 100222691 100223398 707 True 747 747 86.050 1974 2680 1 chrUn.!!$R2 706
6 TraesCS6D01G158500 chrUn 40585262 40585982 720 False 734 734 85.457 1974 2677 1 chrUn.!!$F1 703
7 TraesCS6D01G158500 chrUn 215032630 215033350 720 True 717 717 85.042 1974 2677 1 chrUn.!!$R3 703
8 TraesCS6D01G158500 chrUn 2547689 2548405 716 True 651 651 83.518 1976 2677 1 chrUn.!!$R1 701
9 TraesCS6D01G158500 chr5D 88472744 88473453 709 True 739 739 85.793 1973 2680 1 chr5D.!!$R2 707
10 TraesCS6D01G158500 chr5D 61867947 61868659 712 True 710 710 85.035 1980 2677 1 chr5D.!!$R1 697
11 TraesCS6D01G158500 chr5D 294346790 294347496 706 False 701 701 84.924 1972 2677 1 chr5D.!!$F1 705
12 TraesCS6D01G158500 chr5D 325659062 325659778 716 False 691 691 84.444 1974 2677 1 chr5D.!!$F2 703
13 TraesCS6D01G158500 chr2B 153887866 153888585 719 False 723 723 85.160 1974 2677 1 chr2B.!!$F1 703
14 TraesCS6D01G158500 chr4D 380558434 380559152 718 False 719 719 85.118 1975 2676 1 chr4D.!!$F1 701
15 TraesCS6D01G158500 chr4D 53480435 53481155 720 True 712 712 84.882 1974 2677 1 chr4D.!!$R1 703
16 TraesCS6D01G158500 chr4D 502029864 502030572 708 True 699 699 84.807 1974 2680 1 chr4D.!!$R2 706
17 TraesCS6D01G158500 chr2D 498806048 498806753 705 False 658 658 83.906 1972 2680 1 chr2D.!!$F1 708
18 TraesCS6D01G158500 chr7D 568945449 568946038 589 True 647 647 86.949 2103 2675 1 chr7D.!!$R2 572
19 TraesCS6D01G158500 chr7D 504769461 504770064 603 True 556 556 83.470 1079 1682 1 chr7D.!!$R1 603
20 TraesCS6D01G158500 chr1B 659376698 659377411 713 True 569 569 81.644 1974 2679 1 chr1B.!!$R1 705
21 TraesCS6D01G158500 chr7B 532656511 532657230 719 True 562 562 81.173 966 1682 1 chr7B.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 669 0.104462 AGGGACCCATATGCAGCCTA 60.104 55.0 14.6 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2402 0.394488 TCGCTCTCCTCCGATGTTCT 60.394 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.450115 GGGACGGAGCGCTACAGT 61.450 66.667 21.90 18.26 0.00 3.55
18 19 2.117156 GGGACGGAGCGCTACAGTA 61.117 63.158 21.90 0.00 0.00 2.74
19 20 1.660560 GGGACGGAGCGCTACAGTAA 61.661 60.000 21.90 0.00 0.00 2.24
20 21 0.525029 GGACGGAGCGCTACAGTAAC 60.525 60.000 21.90 10.98 0.00 2.50
21 22 0.169672 GACGGAGCGCTACAGTAACA 59.830 55.000 21.90 0.00 0.00 2.41
22 23 0.599558 ACGGAGCGCTACAGTAACAA 59.400 50.000 21.90 0.00 0.00 2.83
23 24 1.203994 ACGGAGCGCTACAGTAACAAT 59.796 47.619 21.90 0.00 0.00 2.71
24 25 2.268298 CGGAGCGCTACAGTAACAATT 58.732 47.619 21.90 0.00 0.00 2.32
25 26 3.119388 ACGGAGCGCTACAGTAACAATTA 60.119 43.478 21.90 0.00 0.00 1.40
26 27 4.049186 CGGAGCGCTACAGTAACAATTAT 58.951 43.478 21.90 0.00 0.00 1.28
27 28 4.085055 CGGAGCGCTACAGTAACAATTATG 60.085 45.833 21.90 0.00 0.00 1.90
28 29 4.211374 GGAGCGCTACAGTAACAATTATGG 59.789 45.833 16.75 0.00 0.00 2.74
29 30 4.766375 AGCGCTACAGTAACAATTATGGT 58.234 39.130 8.99 0.00 0.00 3.55
30 31 4.570772 AGCGCTACAGTAACAATTATGGTG 59.429 41.667 8.99 0.00 0.00 4.17
31 32 4.569162 GCGCTACAGTAACAATTATGGTGA 59.431 41.667 0.00 0.00 0.00 4.02
32 33 5.064198 GCGCTACAGTAACAATTATGGTGAA 59.936 40.000 0.00 0.00 0.00 3.18
33 34 6.475207 CGCTACAGTAACAATTATGGTGAAC 58.525 40.000 0.00 0.00 0.00 3.18
34 35 6.456449 CGCTACAGTAACAATTATGGTGAACC 60.456 42.308 0.00 0.00 0.00 3.62
43 44 3.236391 TGGTGAACCAAGCGGAGT 58.764 55.556 0.00 0.00 44.35 3.85
44 45 1.070786 TGGTGAACCAAGCGGAGTC 59.929 57.895 0.00 0.00 44.35 3.36
45 46 1.070786 GGTGAACCAAGCGGAGTCA 59.929 57.895 0.00 0.00 35.59 3.41
46 47 1.228657 GGTGAACCAAGCGGAGTCAC 61.229 60.000 9.94 9.94 43.91 3.67
47 48 0.249911 GTGAACCAAGCGGAGTCACT 60.250 55.000 10.72 0.00 42.60 3.41
48 49 1.000506 GTGAACCAAGCGGAGTCACTA 59.999 52.381 10.72 0.00 42.60 2.74
49 50 1.899814 TGAACCAAGCGGAGTCACTAT 59.100 47.619 0.00 0.00 35.59 2.12
50 51 3.093814 TGAACCAAGCGGAGTCACTATA 58.906 45.455 0.00 0.00 35.59 1.31
51 52 3.130516 TGAACCAAGCGGAGTCACTATAG 59.869 47.826 0.00 0.00 35.59 1.31
52 53 2.736347 ACCAAGCGGAGTCACTATAGT 58.264 47.619 0.00 0.00 35.59 2.12
53 54 3.894759 ACCAAGCGGAGTCACTATAGTA 58.105 45.455 4.74 0.00 35.59 1.82
54 55 4.275810 ACCAAGCGGAGTCACTATAGTAA 58.724 43.478 4.74 0.00 35.59 2.24
55 56 4.708421 ACCAAGCGGAGTCACTATAGTAAA 59.292 41.667 4.74 0.00 35.59 2.01
56 57 5.041940 CCAAGCGGAGTCACTATAGTAAAC 58.958 45.833 4.74 7.23 0.00 2.01
57 58 5.163540 CCAAGCGGAGTCACTATAGTAAACT 60.164 44.000 16.20 16.20 0.00 2.66
58 59 5.502153 AGCGGAGTCACTATAGTAAACTG 57.498 43.478 19.56 11.63 0.00 3.16
59 60 4.043073 GCGGAGTCACTATAGTAAACTGC 58.957 47.826 19.56 19.99 32.15 4.40
60 61 4.202030 GCGGAGTCACTATAGTAAACTGCT 60.202 45.833 24.20 11.17 32.80 4.24
61 62 5.274718 CGGAGTCACTATAGTAAACTGCTG 58.725 45.833 24.20 17.86 32.80 4.41
62 63 5.044558 GGAGTCACTATAGTAAACTGCTGC 58.955 45.833 21.84 11.01 32.49 5.25
63 64 5.394224 GGAGTCACTATAGTAAACTGCTGCA 60.394 44.000 21.84 0.88 32.49 4.41
64 65 5.655488 AGTCACTATAGTAAACTGCTGCAG 58.345 41.667 27.02 27.02 37.52 4.41
66 67 6.377429 AGTCACTATAGTAAACTGCTGCAGTA 59.623 38.462 33.11 19.03 44.62 2.74
67 68 6.472808 GTCACTATAGTAAACTGCTGCAGTAC 59.527 42.308 33.11 27.06 44.62 2.73
68 69 6.152154 TCACTATAGTAAACTGCTGCAGTACA 59.848 38.462 33.11 21.35 44.62 2.90
69 70 6.980978 CACTATAGTAAACTGCTGCAGTACAT 59.019 38.462 33.11 23.61 44.62 2.29
70 71 6.980978 ACTATAGTAAACTGCTGCAGTACATG 59.019 38.462 33.11 19.85 44.62 3.21
78 79 4.576843 GCAGTACATGCGCGAATG 57.423 55.556 25.67 25.67 46.99 2.67
79 80 1.010797 GCAGTACATGCGCGAATGG 60.011 57.895 29.98 13.83 46.99 3.16
80 81 1.643292 CAGTACATGCGCGAATGGG 59.357 57.895 29.98 13.14 31.46 4.00
121 122 4.388499 CCGTGCGCCCTGGTACTT 62.388 66.667 4.18 0.00 0.00 2.24
122 123 2.358247 CGTGCGCCCTGGTACTTT 60.358 61.111 4.18 0.00 0.00 2.66
123 124 2.388232 CGTGCGCCCTGGTACTTTC 61.388 63.158 4.18 0.00 0.00 2.62
124 125 2.047655 TGCGCCCTGGTACTTTCG 60.048 61.111 4.18 0.00 0.00 3.46
125 126 2.818274 GCGCCCTGGTACTTTCGG 60.818 66.667 0.00 0.00 0.00 4.30
126 127 2.975536 CGCCCTGGTACTTTCGGA 59.024 61.111 0.00 0.00 0.00 4.55
127 128 1.520666 CGCCCTGGTACTTTCGGAT 59.479 57.895 0.00 0.00 0.00 4.18
128 129 0.107848 CGCCCTGGTACTTTCGGATT 60.108 55.000 0.00 0.00 0.00 3.01
129 130 1.379527 GCCCTGGTACTTTCGGATTG 58.620 55.000 0.00 0.00 0.00 2.67
130 131 1.339727 GCCCTGGTACTTTCGGATTGT 60.340 52.381 0.00 0.00 0.00 2.71
131 132 2.093341 GCCCTGGTACTTTCGGATTGTA 60.093 50.000 0.00 0.00 0.00 2.41
132 133 3.433173 GCCCTGGTACTTTCGGATTGTAT 60.433 47.826 0.00 0.00 0.00 2.29
133 134 4.202284 GCCCTGGTACTTTCGGATTGTATA 60.202 45.833 0.00 0.00 0.00 1.47
134 135 5.512576 GCCCTGGTACTTTCGGATTGTATAT 60.513 44.000 0.00 0.00 0.00 0.86
135 136 6.531021 CCCTGGTACTTTCGGATTGTATATT 58.469 40.000 0.00 0.00 0.00 1.28
136 137 6.996282 CCCTGGTACTTTCGGATTGTATATTT 59.004 38.462 0.00 0.00 0.00 1.40
137 138 7.501225 CCCTGGTACTTTCGGATTGTATATTTT 59.499 37.037 0.00 0.00 0.00 1.82
138 139 8.342634 CCTGGTACTTTCGGATTGTATATTTTG 58.657 37.037 0.00 0.00 0.00 2.44
139 140 8.795842 TGGTACTTTCGGATTGTATATTTTGT 57.204 30.769 0.00 0.00 0.00 2.83
140 141 8.670135 TGGTACTTTCGGATTGTATATTTTGTG 58.330 33.333 0.00 0.00 0.00 3.33
141 142 8.671028 GGTACTTTCGGATTGTATATTTTGTGT 58.329 33.333 0.00 0.00 0.00 3.72
142 143 9.698617 GTACTTTCGGATTGTATATTTTGTGTC 57.301 33.333 0.00 0.00 0.00 3.67
143 144 7.461107 ACTTTCGGATTGTATATTTTGTGTCG 58.539 34.615 0.00 0.00 0.00 4.35
144 145 5.398176 TCGGATTGTATATTTTGTGTCGC 57.602 39.130 0.00 0.00 0.00 5.19
145 146 5.113383 TCGGATTGTATATTTTGTGTCGCT 58.887 37.500 0.00 0.00 0.00 4.93
146 147 5.583061 TCGGATTGTATATTTTGTGTCGCTT 59.417 36.000 0.00 0.00 0.00 4.68
147 148 6.757478 TCGGATTGTATATTTTGTGTCGCTTA 59.243 34.615 0.00 0.00 0.00 3.09
148 149 7.439955 TCGGATTGTATATTTTGTGTCGCTTAT 59.560 33.333 0.00 0.00 0.00 1.73
149 150 8.705134 CGGATTGTATATTTTGTGTCGCTTATA 58.295 33.333 0.00 0.00 0.00 0.98
152 153 8.951787 TTGTATATTTTGTGTCGCTTATAGGT 57.048 30.769 0.00 0.00 0.00 3.08
153 154 8.951787 TGTATATTTTGTGTCGCTTATAGGTT 57.048 30.769 0.00 0.00 0.00 3.50
154 155 9.386010 TGTATATTTTGTGTCGCTTATAGGTTT 57.614 29.630 0.00 0.00 0.00 3.27
157 158 6.870971 TTTTGTGTCGCTTATAGGTTTTCT 57.129 33.333 0.00 0.00 0.00 2.52
158 159 7.966246 TTTTGTGTCGCTTATAGGTTTTCTA 57.034 32.000 0.00 0.00 0.00 2.10
159 160 8.556213 TTTTGTGTCGCTTATAGGTTTTCTAT 57.444 30.769 0.00 0.00 41.31 1.98
160 161 7.534085 TTGTGTCGCTTATAGGTTTTCTATG 57.466 36.000 0.00 0.00 38.96 2.23
161 162 6.636705 TGTGTCGCTTATAGGTTTTCTATGT 58.363 36.000 0.00 0.00 38.96 2.29
162 163 7.101054 TGTGTCGCTTATAGGTTTTCTATGTT 58.899 34.615 0.00 0.00 38.96 2.71
163 164 7.604927 TGTGTCGCTTATAGGTTTTCTATGTTT 59.395 33.333 0.00 0.00 38.96 2.83
164 165 8.448615 GTGTCGCTTATAGGTTTTCTATGTTTT 58.551 33.333 0.00 0.00 38.96 2.43
165 166 9.005777 TGTCGCTTATAGGTTTTCTATGTTTTT 57.994 29.630 0.00 0.00 38.96 1.94
181 182 8.234546 TCTATGTTTTTAAATCTCTTCGTTGGC 58.765 33.333 0.00 0.00 0.00 4.52
182 183 6.137794 TGTTTTTAAATCTCTTCGTTGGCA 57.862 33.333 0.00 0.00 0.00 4.92
183 184 6.205784 TGTTTTTAAATCTCTTCGTTGGCAG 58.794 36.000 0.00 0.00 0.00 4.85
184 185 6.038825 TGTTTTTAAATCTCTTCGTTGGCAGA 59.961 34.615 0.00 0.00 0.00 4.26
185 186 6.627395 TTTTAAATCTCTTCGTTGGCAGAA 57.373 33.333 0.00 0.00 0.00 3.02
186 187 6.627395 TTTAAATCTCTTCGTTGGCAGAAA 57.373 33.333 0.00 0.00 0.00 2.52
187 188 4.756084 AAATCTCTTCGTTGGCAGAAAG 57.244 40.909 0.00 0.00 0.00 2.62
188 189 2.910688 TCTCTTCGTTGGCAGAAAGT 57.089 45.000 0.00 0.00 0.00 2.66
189 190 2.483876 TCTCTTCGTTGGCAGAAAGTG 58.516 47.619 0.00 0.00 0.00 3.16
190 191 2.102420 TCTCTTCGTTGGCAGAAAGTGA 59.898 45.455 0.00 0.00 0.00 3.41
191 192 2.872245 CTCTTCGTTGGCAGAAAGTGAA 59.128 45.455 0.00 0.00 0.00 3.18
192 193 3.275143 TCTTCGTTGGCAGAAAGTGAAA 58.725 40.909 0.00 0.00 0.00 2.69
193 194 3.312421 TCTTCGTTGGCAGAAAGTGAAAG 59.688 43.478 0.00 0.00 0.00 2.62
194 195 2.912771 TCGTTGGCAGAAAGTGAAAGA 58.087 42.857 0.00 0.00 0.00 2.52
195 196 3.476552 TCGTTGGCAGAAAGTGAAAGAT 58.523 40.909 0.00 0.00 0.00 2.40
196 197 3.882888 TCGTTGGCAGAAAGTGAAAGATT 59.117 39.130 0.00 0.00 0.00 2.40
197 198 5.060506 TCGTTGGCAGAAAGTGAAAGATTA 58.939 37.500 0.00 0.00 0.00 1.75
198 199 5.049680 TCGTTGGCAGAAAGTGAAAGATTAC 60.050 40.000 0.00 0.00 0.00 1.89
199 200 5.461526 GTTGGCAGAAAGTGAAAGATTACC 58.538 41.667 0.00 0.00 0.00 2.85
200 201 4.079253 TGGCAGAAAGTGAAAGATTACCC 58.921 43.478 0.00 0.00 0.00 3.69
201 202 4.202567 TGGCAGAAAGTGAAAGATTACCCT 60.203 41.667 0.00 0.00 0.00 4.34
202 203 4.767409 GGCAGAAAGTGAAAGATTACCCTT 59.233 41.667 0.00 0.00 0.00 3.95
203 204 5.243954 GGCAGAAAGTGAAAGATTACCCTTT 59.756 40.000 0.00 0.00 38.92 3.11
204 205 6.152379 GCAGAAAGTGAAAGATTACCCTTTG 58.848 40.000 0.00 0.00 36.58 2.77
205 206 6.016276 GCAGAAAGTGAAAGATTACCCTTTGA 60.016 38.462 0.00 0.00 36.58 2.69
206 207 7.309438 GCAGAAAGTGAAAGATTACCCTTTGAT 60.309 37.037 0.00 0.00 36.58 2.57
207 208 8.579863 CAGAAAGTGAAAGATTACCCTTTGATT 58.420 33.333 0.00 0.00 36.58 2.57
208 209 9.147732 AGAAAGTGAAAGATTACCCTTTGATTT 57.852 29.630 0.00 0.00 36.58 2.17
211 212 8.349568 AGTGAAAGATTACCCTTTGATTTACC 57.650 34.615 0.00 0.00 36.58 2.85
212 213 8.170730 AGTGAAAGATTACCCTTTGATTTACCT 58.829 33.333 0.00 0.00 36.58 3.08
213 214 8.244113 GTGAAAGATTACCCTTTGATTTACCTG 58.756 37.037 0.00 0.00 36.58 4.00
214 215 7.396055 TGAAAGATTACCCTTTGATTTACCTGG 59.604 37.037 0.00 0.00 36.58 4.45
215 216 6.402981 AGATTACCCTTTGATTTACCTGGT 57.597 37.500 4.05 4.05 0.00 4.00
216 217 6.187682 AGATTACCCTTTGATTTACCTGGTG 58.812 40.000 10.23 0.00 0.00 4.17
217 218 3.169512 ACCCTTTGATTTACCTGGTGG 57.830 47.619 10.23 0.72 39.83 4.61
218 219 2.719705 ACCCTTTGATTTACCTGGTGGA 59.280 45.455 10.23 0.00 37.04 4.02
219 220 3.245264 ACCCTTTGATTTACCTGGTGGAG 60.245 47.826 10.23 0.00 37.04 3.86
220 221 2.755103 CCTTTGATTTACCTGGTGGAGC 59.245 50.000 10.23 0.90 37.04 4.70
221 222 3.420893 CTTTGATTTACCTGGTGGAGCA 58.579 45.455 10.23 3.80 37.04 4.26
222 223 3.517296 TTGATTTACCTGGTGGAGCAA 57.483 42.857 10.23 9.97 37.04 3.91
223 224 3.071874 TGATTTACCTGGTGGAGCAAG 57.928 47.619 10.23 0.00 37.04 4.01
224 225 2.642311 TGATTTACCTGGTGGAGCAAGA 59.358 45.455 10.23 0.00 37.04 3.02
225 226 3.073798 TGATTTACCTGGTGGAGCAAGAA 59.926 43.478 10.23 0.00 37.04 2.52
226 227 3.806949 TTTACCTGGTGGAGCAAGAAT 57.193 42.857 10.23 0.00 37.04 2.40
227 228 3.806949 TTACCTGGTGGAGCAAGAATT 57.193 42.857 10.23 0.00 37.04 2.17
228 229 4.919774 TTACCTGGTGGAGCAAGAATTA 57.080 40.909 10.23 0.00 37.04 1.40
229 230 3.356529 ACCTGGTGGAGCAAGAATTAG 57.643 47.619 0.00 0.00 37.04 1.73
230 231 2.644798 ACCTGGTGGAGCAAGAATTAGT 59.355 45.455 0.00 0.00 37.04 2.24
231 232 3.844211 ACCTGGTGGAGCAAGAATTAGTA 59.156 43.478 0.00 0.00 37.04 1.82
232 233 4.080863 ACCTGGTGGAGCAAGAATTAGTAG 60.081 45.833 0.00 0.00 37.04 2.57
233 234 3.873910 TGGTGGAGCAAGAATTAGTAGC 58.126 45.455 0.00 0.00 0.00 3.58
234 235 3.519510 TGGTGGAGCAAGAATTAGTAGCT 59.480 43.478 0.00 0.00 38.43 3.32
235 236 3.873952 GGTGGAGCAAGAATTAGTAGCTG 59.126 47.826 0.00 0.00 35.36 4.24
236 237 4.383118 GGTGGAGCAAGAATTAGTAGCTGA 60.383 45.833 0.00 0.00 35.36 4.26
237 238 5.363939 GTGGAGCAAGAATTAGTAGCTGAT 58.636 41.667 0.00 0.00 35.36 2.90
238 239 5.819901 GTGGAGCAAGAATTAGTAGCTGATT 59.180 40.000 0.00 0.00 35.36 2.57
239 240 6.986817 GTGGAGCAAGAATTAGTAGCTGATTA 59.013 38.462 0.00 0.00 35.36 1.75
240 241 6.986817 TGGAGCAAGAATTAGTAGCTGATTAC 59.013 38.462 0.00 0.00 35.36 1.89
241 242 6.425417 GGAGCAAGAATTAGTAGCTGATTACC 59.575 42.308 0.00 0.00 35.36 2.85
242 243 6.889198 AGCAAGAATTAGTAGCTGATTACCA 58.111 36.000 0.00 0.00 33.67 3.25
243 244 7.338710 AGCAAGAATTAGTAGCTGATTACCAA 58.661 34.615 0.00 0.00 33.67 3.67
244 245 7.829211 AGCAAGAATTAGTAGCTGATTACCAAA 59.171 33.333 0.00 0.00 33.67 3.28
245 246 8.624776 GCAAGAATTAGTAGCTGATTACCAAAT 58.375 33.333 0.00 0.00 0.00 2.32
265 266 8.034804 ACCAAATTAAATATTCTGGTGTCAAGC 58.965 33.333 0.00 0.00 35.86 4.01
266 267 8.034215 CCAAATTAAATATTCTGGTGTCAAGCA 58.966 33.333 0.00 0.00 0.00 3.91
267 268 9.590451 CAAATTAAATATTCTGGTGTCAAGCAT 57.410 29.630 0.00 0.00 32.27 3.79
268 269 9.590451 AAATTAAATATTCTGGTGTCAAGCATG 57.410 29.630 0.00 0.00 32.27 4.06
269 270 5.587388 AAATATTCTGGTGTCAAGCATGG 57.413 39.130 0.00 0.00 32.27 3.66
270 271 2.592102 ATTCTGGTGTCAAGCATGGT 57.408 45.000 0.00 0.00 32.27 3.55
271 272 2.363306 TTCTGGTGTCAAGCATGGTT 57.637 45.000 3.82 3.82 32.27 3.67
272 273 2.363306 TCTGGTGTCAAGCATGGTTT 57.637 45.000 7.57 0.00 32.27 3.27
273 274 3.500448 TCTGGTGTCAAGCATGGTTTA 57.500 42.857 7.57 0.00 32.27 2.01
274 275 4.032960 TCTGGTGTCAAGCATGGTTTAT 57.967 40.909 7.57 0.00 32.27 1.40
275 276 3.758023 TCTGGTGTCAAGCATGGTTTATG 59.242 43.478 7.57 0.00 39.88 1.90
276 277 3.495331 TGGTGTCAAGCATGGTTTATGT 58.505 40.909 7.57 0.00 39.08 2.29
277 278 4.657013 TGGTGTCAAGCATGGTTTATGTA 58.343 39.130 7.57 0.00 39.08 2.29
278 279 5.260424 TGGTGTCAAGCATGGTTTATGTAT 58.740 37.500 7.57 0.00 39.08 2.29
279 280 5.356751 TGGTGTCAAGCATGGTTTATGTATC 59.643 40.000 7.57 0.00 39.08 2.24
280 281 5.590259 GGTGTCAAGCATGGTTTATGTATCT 59.410 40.000 7.57 0.00 39.08 1.98
281 282 6.095440 GGTGTCAAGCATGGTTTATGTATCTT 59.905 38.462 7.57 0.00 39.08 2.40
282 283 6.968904 GTGTCAAGCATGGTTTATGTATCTTG 59.031 38.462 7.57 1.93 39.08 3.02
283 284 6.658816 TGTCAAGCATGGTTTATGTATCTTGT 59.341 34.615 7.57 0.00 39.08 3.16
284 285 7.176515 TGTCAAGCATGGTTTATGTATCTTGTT 59.823 33.333 7.57 0.00 39.08 2.83
285 286 8.028938 GTCAAGCATGGTTTATGTATCTTGTTT 58.971 33.333 7.57 0.00 39.08 2.83
286 287 8.243426 TCAAGCATGGTTTATGTATCTTGTTTC 58.757 33.333 7.57 0.00 39.08 2.78
287 288 7.944729 AGCATGGTTTATGTATCTTGTTTCT 57.055 32.000 0.00 0.00 39.08 2.52
288 289 8.353423 AGCATGGTTTATGTATCTTGTTTCTT 57.647 30.769 0.00 0.00 39.08 2.52
289 290 9.461312 AGCATGGTTTATGTATCTTGTTTCTTA 57.539 29.630 0.00 0.00 39.08 2.10
290 291 9.503427 GCATGGTTTATGTATCTTGTTTCTTAC 57.497 33.333 0.00 0.00 39.08 2.34
292 293 9.975218 ATGGTTTATGTATCTTGTTTCTTACCT 57.025 29.630 0.00 0.00 0.00 3.08
326 327 7.636259 TGGAAAAATACAAATTTGCTTCTCG 57.364 32.000 18.12 0.00 35.46 4.04
327 328 6.145371 TGGAAAAATACAAATTTGCTTCTCGC 59.855 34.615 18.12 3.69 35.46 5.03
328 329 5.745653 AAAATACAAATTTGCTTCTCGCG 57.254 34.783 18.12 0.00 43.27 5.87
329 330 2.892373 TACAAATTTGCTTCTCGCGG 57.108 45.000 18.12 0.00 43.27 6.46
330 331 1.234821 ACAAATTTGCTTCTCGCGGA 58.765 45.000 18.12 0.00 43.27 5.54
331 332 1.606668 ACAAATTTGCTTCTCGCGGAA 59.393 42.857 18.12 8.10 43.27 4.30
332 333 8.724750 AAAATACAAATTTGCTTCTCGCGGAAG 61.725 37.037 24.27 24.27 42.59 3.46
344 345 4.458164 CGGAAGCACGAATTTGCC 57.542 55.556 0.00 0.00 44.14 4.52
345 346 1.875963 CGGAAGCACGAATTTGCCT 59.124 52.632 0.00 0.00 44.14 4.75
346 347 0.240945 CGGAAGCACGAATTTGCCTT 59.759 50.000 0.00 0.00 44.14 4.35
347 348 1.729149 CGGAAGCACGAATTTGCCTTC 60.729 52.381 14.18 14.18 44.14 3.46
368 369 4.732285 CGCAAGAAGTACAGTTGTGATT 57.268 40.909 8.84 0.00 43.02 2.57
369 370 5.095691 CGCAAGAAGTACAGTTGTGATTT 57.904 39.130 8.84 0.00 43.02 2.17
370 371 5.510671 CGCAAGAAGTACAGTTGTGATTTT 58.489 37.500 8.84 0.00 43.02 1.82
371 372 5.621228 CGCAAGAAGTACAGTTGTGATTTTC 59.379 40.000 8.84 0.00 43.02 2.29
372 373 6.494842 GCAAGAAGTACAGTTGTGATTTTCA 58.505 36.000 0.00 0.00 0.00 2.69
373 374 6.972328 GCAAGAAGTACAGTTGTGATTTTCAA 59.028 34.615 0.00 0.00 0.00 2.69
374 375 7.487829 GCAAGAAGTACAGTTGTGATTTTCAAA 59.512 33.333 0.00 0.00 0.00 2.69
375 376 9.352784 CAAGAAGTACAGTTGTGATTTTCAAAA 57.647 29.630 0.00 0.00 0.00 2.44
376 377 9.573133 AAGAAGTACAGTTGTGATTTTCAAAAG 57.427 29.630 0.00 0.00 0.00 2.27
377 378 8.190784 AGAAGTACAGTTGTGATTTTCAAAAGG 58.809 33.333 0.00 0.00 0.00 3.11
378 379 7.639113 AGTACAGTTGTGATTTTCAAAAGGA 57.361 32.000 0.00 0.00 0.00 3.36
379 380 8.062065 AGTACAGTTGTGATTTTCAAAAGGAA 57.938 30.769 0.00 0.00 0.00 3.36
380 381 8.527810 AGTACAGTTGTGATTTTCAAAAGGAAA 58.472 29.630 0.00 0.00 43.59 3.13
412 413 2.281761 CAACTGTGCTTCCGGGCT 60.282 61.111 0.00 0.00 0.00 5.19
413 414 2.032681 AACTGTGCTTCCGGGCTC 59.967 61.111 0.00 0.00 0.00 4.70
414 415 3.553095 AACTGTGCTTCCGGGCTCC 62.553 63.158 0.00 0.00 0.00 4.70
415 416 3.710722 CTGTGCTTCCGGGCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
416 417 3.965539 CTGTGCTTCCGGGCTCCTG 62.966 68.421 0.00 0.00 0.00 3.86
417 418 4.021925 GTGCTTCCGGGCTCCTGT 62.022 66.667 0.00 0.00 0.00 4.00
418 419 2.284331 TGCTTCCGGGCTCCTGTA 60.284 61.111 0.00 0.00 0.00 2.74
419 420 1.689233 TGCTTCCGGGCTCCTGTAT 60.689 57.895 0.00 0.00 0.00 2.29
420 421 1.271840 TGCTTCCGGGCTCCTGTATT 61.272 55.000 0.00 0.00 0.00 1.89
421 422 0.107165 GCTTCCGGGCTCCTGTATTT 60.107 55.000 0.00 0.00 0.00 1.40
422 423 1.682087 GCTTCCGGGCTCCTGTATTTT 60.682 52.381 0.00 0.00 0.00 1.82
423 424 2.723273 CTTCCGGGCTCCTGTATTTTT 58.277 47.619 0.00 0.00 0.00 1.94
424 425 2.122783 TCCGGGCTCCTGTATTTTTG 57.877 50.000 0.00 0.00 0.00 2.44
425 426 1.353022 TCCGGGCTCCTGTATTTTTGT 59.647 47.619 0.00 0.00 0.00 2.83
426 427 2.167662 CCGGGCTCCTGTATTTTTGTT 58.832 47.619 0.00 0.00 0.00 2.83
427 428 2.560981 CCGGGCTCCTGTATTTTTGTTT 59.439 45.455 0.00 0.00 0.00 2.83
428 429 3.006430 CCGGGCTCCTGTATTTTTGTTTT 59.994 43.478 0.00 0.00 0.00 2.43
429 430 3.987220 CGGGCTCCTGTATTTTTGTTTTG 59.013 43.478 0.00 0.00 0.00 2.44
430 431 4.500716 CGGGCTCCTGTATTTTTGTTTTGT 60.501 41.667 0.00 0.00 0.00 2.83
431 432 5.364778 GGGCTCCTGTATTTTTGTTTTGTT 58.635 37.500 0.00 0.00 0.00 2.83
432 433 5.820423 GGGCTCCTGTATTTTTGTTTTGTTT 59.180 36.000 0.00 0.00 0.00 2.83
433 434 6.317642 GGGCTCCTGTATTTTTGTTTTGTTTT 59.682 34.615 0.00 0.00 0.00 2.43
434 435 7.148154 GGGCTCCTGTATTTTTGTTTTGTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
459 460 9.804758 TTTCTATTATTTGTTTTTGTTGTCGGT 57.195 25.926 0.00 0.00 0.00 4.69
466 467 8.710835 ATTTGTTTTTGTTGTCGGTATTTTCT 57.289 26.923 0.00 0.00 0.00 2.52
467 468 7.513190 TTGTTTTTGTTGTCGGTATTTTCTG 57.487 32.000 0.00 0.00 0.00 3.02
468 469 6.622549 TGTTTTTGTTGTCGGTATTTTCTGT 58.377 32.000 0.00 0.00 0.00 3.41
469 470 7.091443 TGTTTTTGTTGTCGGTATTTTCTGTT 58.909 30.769 0.00 0.00 0.00 3.16
470 471 7.599245 TGTTTTTGTTGTCGGTATTTTCTGTTT 59.401 29.630 0.00 0.00 0.00 2.83
471 472 8.436970 GTTTTTGTTGTCGGTATTTTCTGTTTT 58.563 29.630 0.00 0.00 0.00 2.43
472 473 8.535690 TTTTGTTGTCGGTATTTTCTGTTTTT 57.464 26.923 0.00 0.00 0.00 1.94
473 474 7.743520 TTGTTGTCGGTATTTTCTGTTTTTC 57.256 32.000 0.00 0.00 0.00 2.29
474 475 7.090953 TGTTGTCGGTATTTTCTGTTTTTCT 57.909 32.000 0.00 0.00 0.00 2.52
475 476 7.540299 TGTTGTCGGTATTTTCTGTTTTTCTT 58.460 30.769 0.00 0.00 0.00 2.52
476 477 8.030106 TGTTGTCGGTATTTTCTGTTTTTCTTT 58.970 29.630 0.00 0.00 0.00 2.52
477 478 8.529102 GTTGTCGGTATTTTCTGTTTTTCTTTC 58.471 33.333 0.00 0.00 0.00 2.62
478 479 6.908284 TGTCGGTATTTTCTGTTTTTCTTTCG 59.092 34.615 0.00 0.00 0.00 3.46
479 480 6.908820 GTCGGTATTTTCTGTTTTTCTTTCGT 59.091 34.615 0.00 0.00 0.00 3.85
480 481 6.908284 TCGGTATTTTCTGTTTTTCTTTCGTG 59.092 34.615 0.00 0.00 0.00 4.35
481 482 6.908284 CGGTATTTTCTGTTTTTCTTTCGTGA 59.092 34.615 0.00 0.00 0.00 4.35
482 483 7.429920 CGGTATTTTCTGTTTTTCTTTCGTGAA 59.570 33.333 0.00 0.00 0.00 3.18
483 484 9.078753 GGTATTTTCTGTTTTTCTTTCGTGAAA 57.921 29.630 0.00 0.00 34.55 2.69
505 506 6.684609 AAAAATTTCGTCGAAACCTATTGC 57.315 33.333 21.91 0.00 34.23 3.56
506 507 4.351131 AATTTCGTCGAAACCTATTGCC 57.649 40.909 21.91 0.00 34.23 4.52
507 508 2.459060 TTCGTCGAAACCTATTGCCA 57.541 45.000 4.91 0.00 0.00 4.92
508 509 2.684001 TCGTCGAAACCTATTGCCAT 57.316 45.000 0.00 0.00 0.00 4.40
509 510 2.276201 TCGTCGAAACCTATTGCCATG 58.724 47.619 0.00 0.00 0.00 3.66
510 511 1.330521 CGTCGAAACCTATTGCCATGG 59.669 52.381 7.63 7.63 0.00 3.66
511 512 2.365582 GTCGAAACCTATTGCCATGGT 58.634 47.619 14.67 0.00 35.29 3.55
512 513 3.537580 GTCGAAACCTATTGCCATGGTA 58.462 45.455 14.67 5.86 33.17 3.25
513 514 4.134563 GTCGAAACCTATTGCCATGGTAT 58.865 43.478 14.67 9.98 33.17 2.73
514 515 4.213482 GTCGAAACCTATTGCCATGGTATC 59.787 45.833 14.67 0.17 33.17 2.24
515 516 4.102524 TCGAAACCTATTGCCATGGTATCT 59.897 41.667 14.67 2.02 33.17 1.98
516 517 5.305902 TCGAAACCTATTGCCATGGTATCTA 59.694 40.000 14.67 3.17 33.17 1.98
517 518 5.639506 CGAAACCTATTGCCATGGTATCTAG 59.360 44.000 14.67 12.38 33.17 2.43
518 519 6.515512 AAACCTATTGCCATGGTATCTAGT 57.484 37.500 14.67 1.96 33.17 2.57
519 520 6.515512 AACCTATTGCCATGGTATCTAGTT 57.484 37.500 14.67 8.15 33.17 2.24
520 521 6.515512 ACCTATTGCCATGGTATCTAGTTT 57.484 37.500 14.67 0.56 31.50 2.66
521 522 6.534634 ACCTATTGCCATGGTATCTAGTTTC 58.465 40.000 14.67 0.00 31.50 2.78
522 523 5.639506 CCTATTGCCATGGTATCTAGTTTCG 59.360 44.000 14.67 0.00 0.00 3.46
523 524 4.746535 TTGCCATGGTATCTAGTTTCGA 57.253 40.909 14.67 0.00 0.00 3.71
524 525 4.746535 TGCCATGGTATCTAGTTTCGAA 57.253 40.909 14.67 0.00 0.00 3.71
525 526 5.092554 TGCCATGGTATCTAGTTTCGAAA 57.907 39.130 14.67 6.47 0.00 3.46
526 527 5.492895 TGCCATGGTATCTAGTTTCGAAAA 58.507 37.500 13.10 0.00 0.00 2.29
527 528 6.119536 TGCCATGGTATCTAGTTTCGAAAAT 58.880 36.000 15.79 15.79 0.00 1.82
528 529 6.260050 TGCCATGGTATCTAGTTTCGAAAATC 59.740 38.462 14.90 2.01 0.00 2.17
529 530 6.483640 GCCATGGTATCTAGTTTCGAAAATCT 59.516 38.462 14.90 10.01 0.00 2.40
530 531 7.307455 GCCATGGTATCTAGTTTCGAAAATCTC 60.307 40.741 14.90 0.84 0.00 2.75
549 550 2.616960 TCGATGTGAGAAATCCAACGG 58.383 47.619 0.00 0.00 0.00 4.44
550 551 2.028476 TCGATGTGAGAAATCCAACGGT 60.028 45.455 0.00 0.00 0.00 4.83
551 552 3.193903 TCGATGTGAGAAATCCAACGGTA 59.806 43.478 0.00 0.00 0.00 4.02
552 553 3.930229 CGATGTGAGAAATCCAACGGTAA 59.070 43.478 0.00 0.00 0.00 2.85
553 554 4.390603 CGATGTGAGAAATCCAACGGTAAA 59.609 41.667 0.00 0.00 0.00 2.01
554 555 5.106869 CGATGTGAGAAATCCAACGGTAAAA 60.107 40.000 0.00 0.00 0.00 1.52
555 556 6.566942 CGATGTGAGAAATCCAACGGTAAAAA 60.567 38.462 0.00 0.00 0.00 1.94
556 557 5.823353 TGTGAGAAATCCAACGGTAAAAAC 58.177 37.500 0.00 0.00 0.00 2.43
557 558 4.907582 GTGAGAAATCCAACGGTAAAAACG 59.092 41.667 0.00 0.00 37.36 3.60
558 559 4.815308 TGAGAAATCCAACGGTAAAAACGA 59.185 37.500 0.00 0.00 34.93 3.85
559 560 5.470777 TGAGAAATCCAACGGTAAAAACGAT 59.529 36.000 0.00 0.00 34.93 3.73
560 561 5.934921 AGAAATCCAACGGTAAAAACGATC 58.065 37.500 0.00 0.00 34.93 3.69
561 562 4.690184 AATCCAACGGTAAAAACGATCC 57.310 40.909 0.00 0.00 34.93 3.36
562 563 3.123157 TCCAACGGTAAAAACGATCCA 57.877 42.857 0.00 0.00 34.93 3.41
563 564 3.474600 TCCAACGGTAAAAACGATCCAA 58.525 40.909 0.00 0.00 34.93 3.53
564 565 3.250521 TCCAACGGTAAAAACGATCCAAC 59.749 43.478 0.00 0.00 34.93 3.77
565 566 3.003482 CCAACGGTAAAAACGATCCAACA 59.997 43.478 0.00 0.00 34.93 3.33
566 567 4.320641 CCAACGGTAAAAACGATCCAACAT 60.321 41.667 0.00 0.00 34.93 2.71
567 568 5.216648 CAACGGTAAAAACGATCCAACATT 58.783 37.500 0.00 0.00 34.93 2.71
568 569 5.441709 ACGGTAAAAACGATCCAACATTT 57.558 34.783 0.00 0.00 34.93 2.32
569 570 5.216648 ACGGTAAAAACGATCCAACATTTG 58.783 37.500 0.00 0.00 34.93 2.32
570 571 5.791057 ACGGTAAAAACGATCCAACATTTGG 60.791 40.000 0.00 0.00 42.52 3.28
584 585 6.321873 CAACATTTGGATGCACGATTTAAG 57.678 37.500 0.00 0.00 36.72 1.85
585 586 5.895636 ACATTTGGATGCACGATTTAAGA 57.104 34.783 0.00 0.00 36.72 2.10
586 587 6.455360 ACATTTGGATGCACGATTTAAGAT 57.545 33.333 0.00 0.00 36.72 2.40
587 588 7.566760 ACATTTGGATGCACGATTTAAGATA 57.433 32.000 0.00 0.00 36.72 1.98
588 589 8.169977 ACATTTGGATGCACGATTTAAGATAT 57.830 30.769 0.00 0.00 36.72 1.63
589 590 9.283768 ACATTTGGATGCACGATTTAAGATATA 57.716 29.630 0.00 0.00 36.72 0.86
618 619 7.845617 GTTTTGTGTAAAACGCATCTATGAA 57.154 32.000 0.00 0.00 44.19 2.57
619 620 8.276060 GTTTTGTGTAAAACGCATCTATGAAA 57.724 30.769 0.00 0.00 44.19 2.69
620 621 8.747666 GTTTTGTGTAAAACGCATCTATGAAAA 58.252 29.630 0.00 0.00 44.19 2.29
621 622 8.500837 TTTGTGTAAAACGCATCTATGAAAAG 57.499 30.769 0.00 0.00 38.53 2.27
622 623 7.428282 TGTGTAAAACGCATCTATGAAAAGA 57.572 32.000 0.00 0.00 33.08 2.52
623 624 8.039603 TGTGTAAAACGCATCTATGAAAAGAT 57.960 30.769 0.00 0.00 36.64 2.40
624 625 9.157104 TGTGTAAAACGCATCTATGAAAAGATA 57.843 29.630 0.00 0.00 34.40 1.98
625 626 9.982291 GTGTAAAACGCATCTATGAAAAGATAA 57.018 29.630 0.00 0.00 34.40 1.75
651 652 7.693969 AAAAACTCTCAGGTCATGATAAAGG 57.306 36.000 0.00 0.00 37.28 3.11
652 653 5.365021 AACTCTCAGGTCATGATAAAGGG 57.635 43.478 0.00 0.00 37.28 3.95
653 654 4.624913 ACTCTCAGGTCATGATAAAGGGA 58.375 43.478 0.00 0.00 37.28 4.20
654 655 4.407296 ACTCTCAGGTCATGATAAAGGGAC 59.593 45.833 0.00 0.00 37.28 4.46
658 659 3.884037 GGTCATGATAAAGGGACCCAT 57.116 47.619 14.60 0.00 43.14 4.00
659 660 4.993705 GGTCATGATAAAGGGACCCATA 57.006 45.455 14.60 5.87 43.14 2.74
660 661 5.520748 GGTCATGATAAAGGGACCCATAT 57.479 43.478 14.60 10.87 43.14 1.78
661 662 5.256474 GGTCATGATAAAGGGACCCATATG 58.744 45.833 14.60 7.67 43.14 1.78
662 663 4.702131 GTCATGATAAAGGGACCCATATGC 59.298 45.833 14.60 6.18 0.00 3.14
663 664 4.353489 TCATGATAAAGGGACCCATATGCA 59.647 41.667 14.60 10.89 0.00 3.96
664 665 4.371624 TGATAAAGGGACCCATATGCAG 57.628 45.455 14.60 0.00 0.00 4.41
665 666 2.656947 TAAAGGGACCCATATGCAGC 57.343 50.000 14.60 0.00 0.00 5.25
666 667 0.106015 AAAGGGACCCATATGCAGCC 60.106 55.000 14.60 0.00 0.00 4.85
667 668 0.995675 AAGGGACCCATATGCAGCCT 60.996 55.000 14.60 0.00 0.00 4.58
668 669 0.104462 AGGGACCCATATGCAGCCTA 60.104 55.000 14.60 0.00 0.00 3.93
669 670 0.995024 GGGACCCATATGCAGCCTAT 59.005 55.000 5.33 0.00 0.00 2.57
670 671 1.065126 GGGACCCATATGCAGCCTATC 60.065 57.143 5.33 0.00 0.00 2.08
671 672 1.630369 GGACCCATATGCAGCCTATCA 59.370 52.381 0.00 0.00 0.00 2.15
672 673 2.616510 GGACCCATATGCAGCCTATCAC 60.617 54.545 0.00 0.00 0.00 3.06
673 674 2.304180 GACCCATATGCAGCCTATCACT 59.696 50.000 0.00 0.00 0.00 3.41
674 675 2.713167 ACCCATATGCAGCCTATCACTT 59.287 45.455 0.00 0.00 0.00 3.16
675 676 3.079578 CCCATATGCAGCCTATCACTTG 58.920 50.000 0.00 0.00 0.00 3.16
676 677 3.497405 CCCATATGCAGCCTATCACTTGT 60.497 47.826 0.00 0.00 0.00 3.16
677 678 3.501062 CCATATGCAGCCTATCACTTGTG 59.499 47.826 0.00 0.00 0.00 3.33
678 679 4.383173 CATATGCAGCCTATCACTTGTGA 58.617 43.478 5.89 5.89 0.00 3.58
679 680 2.391616 TGCAGCCTATCACTTGTGAG 57.608 50.000 9.39 0.00 0.00 3.51
680 681 1.901833 TGCAGCCTATCACTTGTGAGA 59.098 47.619 9.39 3.90 0.00 3.27
681 682 2.093816 TGCAGCCTATCACTTGTGAGAG 60.094 50.000 15.92 15.92 0.00 3.20
682 683 2.548875 CAGCCTATCACTTGTGAGAGC 58.451 52.381 17.06 14.24 0.00 4.09
683 684 1.135915 AGCCTATCACTTGTGAGAGCG 59.864 52.381 17.06 12.32 0.00 5.03
684 685 1.134965 GCCTATCACTTGTGAGAGCGT 60.135 52.381 17.06 0.45 0.00 5.07
685 686 2.534298 CCTATCACTTGTGAGAGCGTG 58.466 52.381 17.06 3.60 0.00 5.34
686 687 2.164422 CCTATCACTTGTGAGAGCGTGA 59.836 50.000 17.06 0.00 40.27 4.35
687 688 2.360553 ATCACTTGTGAGAGCGTGAG 57.639 50.000 9.39 0.00 39.46 3.51
688 689 1.318576 TCACTTGTGAGAGCGTGAGA 58.681 50.000 0.00 0.00 33.01 3.27
689 690 1.681264 TCACTTGTGAGAGCGTGAGAA 59.319 47.619 0.00 0.00 33.01 2.87
690 691 2.057316 CACTTGTGAGAGCGTGAGAAG 58.943 52.381 0.00 0.00 0.00 2.85
691 692 1.957177 ACTTGTGAGAGCGTGAGAAGA 59.043 47.619 0.00 0.00 0.00 2.87
692 693 2.560542 ACTTGTGAGAGCGTGAGAAGAT 59.439 45.455 0.00 0.00 0.00 2.40
693 694 2.643933 TGTGAGAGCGTGAGAAGATG 57.356 50.000 0.00 0.00 0.00 2.90
694 695 2.162681 TGTGAGAGCGTGAGAAGATGA 58.837 47.619 0.00 0.00 0.00 2.92
695 696 2.163211 TGTGAGAGCGTGAGAAGATGAG 59.837 50.000 0.00 0.00 0.00 2.90
696 697 2.163412 GTGAGAGCGTGAGAAGATGAGT 59.837 50.000 0.00 0.00 0.00 3.41
697 698 3.375610 GTGAGAGCGTGAGAAGATGAGTA 59.624 47.826 0.00 0.00 0.00 2.59
698 699 3.625313 TGAGAGCGTGAGAAGATGAGTAG 59.375 47.826 0.00 0.00 0.00 2.57
699 700 3.616219 AGAGCGTGAGAAGATGAGTAGT 58.384 45.455 0.00 0.00 0.00 2.73
700 701 3.376859 AGAGCGTGAGAAGATGAGTAGTG 59.623 47.826 0.00 0.00 0.00 2.74
701 702 3.348119 AGCGTGAGAAGATGAGTAGTGA 58.652 45.455 0.00 0.00 0.00 3.41
702 703 3.376859 AGCGTGAGAAGATGAGTAGTGAG 59.623 47.826 0.00 0.00 0.00 3.51
703 704 3.375610 GCGTGAGAAGATGAGTAGTGAGA 59.624 47.826 0.00 0.00 0.00 3.27
704 705 4.495679 GCGTGAGAAGATGAGTAGTGAGAG 60.496 50.000 0.00 0.00 0.00 3.20
705 706 4.495679 CGTGAGAAGATGAGTAGTGAGAGC 60.496 50.000 0.00 0.00 0.00 4.09
706 707 4.640201 GTGAGAAGATGAGTAGTGAGAGCT 59.360 45.833 0.00 0.00 0.00 4.09
707 708 5.125417 GTGAGAAGATGAGTAGTGAGAGCTT 59.875 44.000 0.00 0.00 0.00 3.74
708 709 5.714333 TGAGAAGATGAGTAGTGAGAGCTTT 59.286 40.000 0.00 0.00 0.00 3.51
709 710 5.964758 AGAAGATGAGTAGTGAGAGCTTTG 58.035 41.667 0.00 0.00 0.00 2.77
710 711 4.122143 AGATGAGTAGTGAGAGCTTTGC 57.878 45.455 0.00 0.00 0.00 3.68
711 712 3.513119 AGATGAGTAGTGAGAGCTTTGCA 59.487 43.478 0.00 0.00 0.00 4.08
712 713 3.751479 TGAGTAGTGAGAGCTTTGCAA 57.249 42.857 0.00 0.00 0.00 4.08
713 714 4.071961 TGAGTAGTGAGAGCTTTGCAAA 57.928 40.909 12.14 12.14 0.00 3.68
714 715 4.060900 TGAGTAGTGAGAGCTTTGCAAAG 58.939 43.478 30.70 30.70 39.03 2.77
715 716 3.406764 AGTAGTGAGAGCTTTGCAAAGG 58.593 45.455 34.02 19.32 36.53 3.11
717 718 3.492102 AGTGAGAGCTTTGCAAAGGTA 57.508 42.857 36.33 22.54 45.82 3.08
724 725 1.197036 GCTTTGCAAAGGTACCTCGAC 59.803 52.381 34.02 14.82 36.53 4.20
726 727 2.163818 TTGCAAAGGTACCTCGACTG 57.836 50.000 16.64 11.41 0.00 3.51
790 791 2.116125 AGGCCCAACCAAGTGCTC 59.884 61.111 0.00 0.00 43.14 4.26
791 792 2.203480 GGCCCAACCAAGTGCTCA 60.203 61.111 0.00 0.00 38.86 4.26
792 793 2.270986 GGCCCAACCAAGTGCTCAG 61.271 63.158 0.00 0.00 38.86 3.35
793 794 2.924105 GCCCAACCAAGTGCTCAGC 61.924 63.158 0.00 0.00 0.00 4.26
794 795 1.228367 CCCAACCAAGTGCTCAGCT 60.228 57.895 0.00 0.00 0.00 4.24
913 918 4.323477 CACCCGGCCGTTCCTTCA 62.323 66.667 26.12 0.00 0.00 3.02
924 929 2.029380 CCGTTCCTTCAATCCAAAACCC 60.029 50.000 0.00 0.00 0.00 4.11
929 934 4.294347 TCCTTCAATCCAAAACCCAAACT 58.706 39.130 0.00 0.00 0.00 2.66
934 939 2.534042 TCCAAAACCCAAACTCCACA 57.466 45.000 0.00 0.00 0.00 4.17
947 952 2.113139 CCACACCCCACGCTCTTT 59.887 61.111 0.00 0.00 0.00 2.52
995 1000 4.473520 CACATCGCCTCGCCCCTT 62.474 66.667 0.00 0.00 0.00 3.95
1011 1016 3.626996 CTTCTCCATGGCCACCGCA 62.627 63.158 8.16 0.00 36.38 5.69
1701 1721 3.194308 GCGGCTGCTCTGCTTCTC 61.194 66.667 11.21 0.00 43.74 2.87
1712 1732 2.883253 GCTTCTCGCCTGAGTCGC 60.883 66.667 0.00 0.00 43.09 5.19
1768 1788 1.933853 GAACTGTTGCTCGTGTGAGTT 59.066 47.619 0.00 0.00 44.48 3.01
1783 1803 1.000394 TGAGTTTCCTTCGATGCGTCA 60.000 47.619 6.75 0.00 0.00 4.35
1824 1844 6.551385 TTGTTTTGTTTTGTTGAGCATTGT 57.449 29.167 0.00 0.00 0.00 2.71
1884 1904 1.774639 TGGCGTCGTACTTGTTCTTC 58.225 50.000 0.00 0.00 0.00 2.87
1906 1934 2.436646 GCCAGCGCTAAAGCCTGA 60.437 61.111 10.99 0.00 39.83 3.86
1907 1935 2.467826 GCCAGCGCTAAAGCCTGAG 61.468 63.158 10.99 0.00 39.83 3.35
1929 1957 4.520492 AGGGTTTGCTGAGATGTTTACAAG 59.480 41.667 0.00 0.00 0.00 3.16
1935 1963 5.312895 TGCTGAGATGTTTACAAGGCTTTA 58.687 37.500 0.00 0.00 0.00 1.85
1936 1964 5.181245 TGCTGAGATGTTTACAAGGCTTTAC 59.819 40.000 0.00 0.00 0.00 2.01
1937 1965 5.181245 GCTGAGATGTTTACAAGGCTTTACA 59.819 40.000 0.00 0.23 0.00 2.41
1939 1967 7.575414 TGAGATGTTTACAAGGCTTTACAAA 57.425 32.000 0.00 0.00 0.00 2.83
1941 1969 8.637986 TGAGATGTTTACAAGGCTTTACAAAAT 58.362 29.630 0.00 0.00 0.00 1.82
1942 1970 9.129209 GAGATGTTTACAAGGCTTTACAAAATC 57.871 33.333 0.00 0.83 0.00 2.17
1943 1971 7.807907 AGATGTTTACAAGGCTTTACAAAATCG 59.192 33.333 0.00 0.00 0.00 3.34
1944 1972 5.688176 TGTTTACAAGGCTTTACAAAATCGC 59.312 36.000 0.00 0.00 0.00 4.58
1956 1984 1.652124 CAAAATCGCATTGTGCTGAGC 59.348 47.619 0.00 0.00 42.25 4.26
1959 1987 2.028420 ATCGCATTGTGCTGAGCTTA 57.972 45.000 5.83 0.00 42.25 3.09
1966 1994 1.979855 TGTGCTGAGCTTAAAGGCAA 58.020 45.000 5.83 0.00 34.65 4.52
1967 1995 1.608590 TGTGCTGAGCTTAAAGGCAAC 59.391 47.619 5.83 0.00 34.65 4.17
1968 1996 1.608590 GTGCTGAGCTTAAAGGCAACA 59.391 47.619 5.83 0.00 41.41 3.33
1969 1997 1.881973 TGCTGAGCTTAAAGGCAACAG 59.118 47.619 5.83 0.00 39.65 3.16
1970 1998 2.154462 GCTGAGCTTAAAGGCAACAGA 58.846 47.619 0.00 0.00 39.33 3.41
1971 1999 2.751806 GCTGAGCTTAAAGGCAACAGAT 59.248 45.455 0.00 0.00 39.33 2.90
2000 2032 6.721571 TTTTCAAGAATACGCCTAGAAGTG 57.278 37.500 0.00 0.00 0.00 3.16
2014 2046 6.231211 GCCTAGAAGTGCCATAGCTTTATAA 58.769 40.000 0.00 0.00 40.80 0.98
2017 2049 8.560374 CCTAGAAGTGCCATAGCTTTATAAAAC 58.440 37.037 0.00 0.00 40.80 2.43
2019 2051 6.821665 AGAAGTGCCATAGCTTTATAAAACGA 59.178 34.615 0.00 0.00 40.80 3.85
2022 2054 7.639945 AGTGCCATAGCTTTATAAAACGAATC 58.360 34.615 0.00 0.00 40.80 2.52
2144 2178 2.866762 CAACGCAAAGAGCCTATCCTAC 59.133 50.000 0.00 0.00 41.38 3.18
2161 2195 2.288030 CCTACTCGAAACTCAACACCGT 60.288 50.000 0.00 0.00 0.00 4.83
2171 2206 2.279918 AACACCGTGTCTCACCGC 60.280 61.111 4.23 0.00 0.00 5.68
2267 2302 1.150536 GGAAGTGGCAAGTGGGTGA 59.849 57.895 0.00 0.00 0.00 4.02
2342 2386 1.015109 TACTTAGCGTCGCAGAGGAG 58.985 55.000 21.09 11.23 46.48 3.69
2358 2402 1.194781 GGAGCAAGGAGGACAGTGGA 61.195 60.000 0.00 0.00 0.00 4.02
2364 2408 2.304180 CAAGGAGGACAGTGGAGAACAT 59.696 50.000 0.00 0.00 0.00 2.71
2425 2469 3.266772 ACAATGCTCCCAATAGAGGAACA 59.733 43.478 0.00 0.00 37.78 3.18
2506 2555 2.564771 CACAACTCCAAGCAAGTGAGA 58.435 47.619 0.00 0.00 0.00 3.27
2587 2652 2.343101 CGGAGGTCGTGCAAGATTTTA 58.657 47.619 5.42 0.00 0.00 1.52
2590 2655 4.142687 CGGAGGTCGTGCAAGATTTTAATT 60.143 41.667 5.42 0.00 0.00 1.40
2617 2682 1.675641 GCACCTCACCACACCATCC 60.676 63.158 0.00 0.00 0.00 3.51
2618 2683 1.375908 CACCTCACCACACCATCCG 60.376 63.158 0.00 0.00 0.00 4.18
2680 2745 1.443194 GCAGCACTTCGCCAATGTG 60.443 57.895 0.00 0.00 44.04 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.660560 TTACTGTAGCGCTCCGTCCC 61.661 60.000 16.34 0.00 0.00 4.46
5 6 4.211374 CCATAATTGTTACTGTAGCGCTCC 59.789 45.833 16.34 1.51 0.00 4.70
6 7 4.809426 ACCATAATTGTTACTGTAGCGCTC 59.191 41.667 16.34 6.54 0.00 5.03
7 8 4.570772 CACCATAATTGTTACTGTAGCGCT 59.429 41.667 17.26 17.26 0.00 5.92
8 9 4.569162 TCACCATAATTGTTACTGTAGCGC 59.431 41.667 0.00 0.00 0.00 5.92
9 10 6.456449 GGTTCACCATAATTGTTACTGTAGCG 60.456 42.308 0.00 0.00 35.64 4.26
10 11 6.373216 TGGTTCACCATAATTGTTACTGTAGC 59.627 38.462 0.00 0.00 42.01 3.58
11 12 7.915293 TGGTTCACCATAATTGTTACTGTAG 57.085 36.000 0.00 0.00 42.01 2.74
12 13 7.094549 GCTTGGTTCACCATAATTGTTACTGTA 60.095 37.037 0.00 0.00 46.97 2.74
13 14 6.294508 GCTTGGTTCACCATAATTGTTACTGT 60.295 38.462 0.00 0.00 46.97 3.55
14 15 6.092748 GCTTGGTTCACCATAATTGTTACTG 58.907 40.000 0.00 0.00 46.97 2.74
15 16 5.106317 CGCTTGGTTCACCATAATTGTTACT 60.106 40.000 0.00 0.00 46.97 2.24
16 17 5.092781 CGCTTGGTTCACCATAATTGTTAC 58.907 41.667 0.00 0.00 46.97 2.50
17 18 4.156922 CCGCTTGGTTCACCATAATTGTTA 59.843 41.667 0.00 0.00 46.97 2.41
18 19 3.056891 CCGCTTGGTTCACCATAATTGTT 60.057 43.478 0.00 0.00 46.97 2.83
19 20 2.491693 CCGCTTGGTTCACCATAATTGT 59.508 45.455 0.00 0.00 46.97 2.71
20 21 2.752354 TCCGCTTGGTTCACCATAATTG 59.248 45.455 0.00 0.00 46.97 2.32
21 22 3.016736 CTCCGCTTGGTTCACCATAATT 58.983 45.455 0.00 0.00 46.97 1.40
22 23 2.026262 ACTCCGCTTGGTTCACCATAAT 60.026 45.455 0.00 0.00 46.97 1.28
23 24 1.349688 ACTCCGCTTGGTTCACCATAA 59.650 47.619 0.00 0.00 46.97 1.90
24 25 0.981183 ACTCCGCTTGGTTCACCATA 59.019 50.000 0.00 0.00 46.97 2.74
25 26 0.321653 GACTCCGCTTGGTTCACCAT 60.322 55.000 0.00 0.00 46.97 3.55
26 27 1.070786 GACTCCGCTTGGTTCACCA 59.929 57.895 0.00 0.00 45.94 4.17
27 28 1.070786 TGACTCCGCTTGGTTCACC 59.929 57.895 0.00 0.00 0.00 4.02
28 29 0.249911 AGTGACTCCGCTTGGTTCAC 60.250 55.000 9.41 9.41 42.43 3.18
29 30 1.334160 TAGTGACTCCGCTTGGTTCA 58.666 50.000 0.00 0.00 34.50 3.18
30 31 2.674796 ATAGTGACTCCGCTTGGTTC 57.325 50.000 0.00 0.00 34.50 3.62
31 32 3.097614 ACTATAGTGACTCCGCTTGGTT 58.902 45.455 4.10 0.00 34.50 3.67
32 33 2.736347 ACTATAGTGACTCCGCTTGGT 58.264 47.619 4.10 0.00 34.50 3.67
33 34 4.913335 TTACTATAGTGACTCCGCTTGG 57.087 45.455 15.90 0.00 34.50 3.61
34 35 5.744345 CAGTTTACTATAGTGACTCCGCTTG 59.256 44.000 15.90 4.20 34.50 4.01
35 36 5.679127 GCAGTTTACTATAGTGACTCCGCTT 60.679 44.000 15.90 0.00 34.50 4.68
36 37 4.202030 GCAGTTTACTATAGTGACTCCGCT 60.202 45.833 15.90 1.68 36.94 5.52
37 38 4.043073 GCAGTTTACTATAGTGACTCCGC 58.957 47.826 15.90 14.11 0.00 5.54
38 39 5.274718 CAGCAGTTTACTATAGTGACTCCG 58.725 45.833 15.90 9.16 0.00 4.63
39 40 5.044558 GCAGCAGTTTACTATAGTGACTCC 58.955 45.833 15.90 9.39 0.00 3.85
40 41 5.651530 TGCAGCAGTTTACTATAGTGACTC 58.348 41.667 15.90 11.88 0.00 3.36
41 42 5.186021 ACTGCAGCAGTTTACTATAGTGACT 59.814 40.000 23.11 15.09 42.59 3.41
42 43 5.411781 ACTGCAGCAGTTTACTATAGTGAC 58.588 41.667 23.11 13.20 42.59 3.67
43 44 5.661056 ACTGCAGCAGTTTACTATAGTGA 57.339 39.130 23.11 4.23 42.59 3.41
44 45 6.330278 TGTACTGCAGCAGTTTACTATAGTG 58.670 40.000 32.64 0.21 42.59 2.74
45 46 6.525578 TGTACTGCAGCAGTTTACTATAGT 57.474 37.500 32.64 10.87 42.59 2.12
46 47 7.400158 CATGTACTGCAGCAGTTTACTATAG 57.600 40.000 32.64 12.74 42.59 1.31
62 63 1.643292 CCCATTCGCGCATGTACTG 59.357 57.895 17.27 2.13 0.00 2.74
63 64 2.180204 GCCCATTCGCGCATGTACT 61.180 57.895 17.27 0.00 0.00 2.73
64 65 2.327940 GCCCATTCGCGCATGTAC 59.672 61.111 17.27 5.33 0.00 2.90
65 66 2.899838 GGCCCATTCGCGCATGTA 60.900 61.111 17.27 0.00 0.00 2.29
104 105 3.894547 AAAGTACCAGGGCGCACGG 62.895 63.158 17.18 17.18 0.00 4.94
105 106 2.358247 AAAGTACCAGGGCGCACG 60.358 61.111 10.83 1.33 0.00 5.34
106 107 2.388232 CGAAAGTACCAGGGCGCAC 61.388 63.158 10.83 5.15 0.00 5.34
107 108 2.047655 CGAAAGTACCAGGGCGCA 60.048 61.111 10.83 0.00 0.00 6.09
108 109 2.588856 ATCCGAAAGTACCAGGGCGC 62.589 60.000 0.00 0.00 0.00 6.53
109 110 0.107848 AATCCGAAAGTACCAGGGCG 60.108 55.000 0.00 0.00 0.00 6.13
110 111 1.339727 ACAATCCGAAAGTACCAGGGC 60.340 52.381 0.00 0.00 0.00 5.19
111 112 2.781681 ACAATCCGAAAGTACCAGGG 57.218 50.000 0.00 0.00 0.00 4.45
112 113 8.342634 CAAAATATACAATCCGAAAGTACCAGG 58.657 37.037 0.00 0.00 0.00 4.45
113 114 8.889717 ACAAAATATACAATCCGAAAGTACCAG 58.110 33.333 0.00 0.00 0.00 4.00
114 115 8.670135 CACAAAATATACAATCCGAAAGTACCA 58.330 33.333 0.00 0.00 0.00 3.25
115 116 8.671028 ACACAAAATATACAATCCGAAAGTACC 58.329 33.333 0.00 0.00 0.00 3.34
116 117 9.698617 GACACAAAATATACAATCCGAAAGTAC 57.301 33.333 0.00 0.00 0.00 2.73
117 118 8.597227 CGACACAAAATATACAATCCGAAAGTA 58.403 33.333 0.00 0.00 0.00 2.24
118 119 7.461107 CGACACAAAATATACAATCCGAAAGT 58.539 34.615 0.00 0.00 0.00 2.66
119 120 6.410914 GCGACACAAAATATACAATCCGAAAG 59.589 38.462 0.00 0.00 0.00 2.62
120 121 6.092944 AGCGACACAAAATATACAATCCGAAA 59.907 34.615 0.00 0.00 0.00 3.46
121 122 5.583061 AGCGACACAAAATATACAATCCGAA 59.417 36.000 0.00 0.00 0.00 4.30
122 123 5.113383 AGCGACACAAAATATACAATCCGA 58.887 37.500 0.00 0.00 0.00 4.55
123 124 5.403897 AGCGACACAAAATATACAATCCG 57.596 39.130 0.00 0.00 0.00 4.18
126 127 9.555727 ACCTATAAGCGACACAAAATATACAAT 57.444 29.630 0.00 0.00 0.00 2.71
127 128 8.951787 ACCTATAAGCGACACAAAATATACAA 57.048 30.769 0.00 0.00 0.00 2.41
128 129 8.951787 AACCTATAAGCGACACAAAATATACA 57.048 30.769 0.00 0.00 0.00 2.29
131 132 9.174166 AGAAAACCTATAAGCGACACAAAATAT 57.826 29.630 0.00 0.00 0.00 1.28
132 133 8.556213 AGAAAACCTATAAGCGACACAAAATA 57.444 30.769 0.00 0.00 0.00 1.40
133 134 7.448748 AGAAAACCTATAAGCGACACAAAAT 57.551 32.000 0.00 0.00 0.00 1.82
134 135 6.870971 AGAAAACCTATAAGCGACACAAAA 57.129 33.333 0.00 0.00 0.00 2.44
135 136 7.604927 ACATAGAAAACCTATAAGCGACACAAA 59.395 33.333 0.00 0.00 35.96 2.83
136 137 7.101054 ACATAGAAAACCTATAAGCGACACAA 58.899 34.615 0.00 0.00 35.96 3.33
137 138 6.636705 ACATAGAAAACCTATAAGCGACACA 58.363 36.000 0.00 0.00 35.96 3.72
138 139 7.535489 AACATAGAAAACCTATAAGCGACAC 57.465 36.000 0.00 0.00 35.96 3.67
139 140 8.556213 AAAACATAGAAAACCTATAAGCGACA 57.444 30.769 0.00 0.00 35.96 4.35
155 156 8.234546 GCCAACGAAGAGATTTAAAAACATAGA 58.765 33.333 0.00 0.00 0.00 1.98
156 157 8.020819 TGCCAACGAAGAGATTTAAAAACATAG 58.979 33.333 0.00 0.00 0.00 2.23
157 158 7.877003 TGCCAACGAAGAGATTTAAAAACATA 58.123 30.769 0.00 0.00 0.00 2.29
158 159 6.744112 TGCCAACGAAGAGATTTAAAAACAT 58.256 32.000 0.00 0.00 0.00 2.71
159 160 6.038825 TCTGCCAACGAAGAGATTTAAAAACA 59.961 34.615 0.00 0.00 0.00 2.83
160 161 6.435428 TCTGCCAACGAAGAGATTTAAAAAC 58.565 36.000 0.00 0.00 0.00 2.43
161 162 6.627395 TCTGCCAACGAAGAGATTTAAAAA 57.373 33.333 0.00 0.00 0.00 1.94
162 163 6.627395 TTCTGCCAACGAAGAGATTTAAAA 57.373 33.333 0.00 0.00 0.00 1.52
163 164 6.262273 ACTTTCTGCCAACGAAGAGATTTAAA 59.738 34.615 0.00 0.00 0.00 1.52
164 165 5.763204 ACTTTCTGCCAACGAAGAGATTTAA 59.237 36.000 0.00 0.00 0.00 1.52
165 166 5.179368 CACTTTCTGCCAACGAAGAGATTTA 59.821 40.000 0.00 0.00 0.00 1.40
166 167 4.023707 CACTTTCTGCCAACGAAGAGATTT 60.024 41.667 0.00 0.00 0.00 2.17
167 168 3.499918 CACTTTCTGCCAACGAAGAGATT 59.500 43.478 0.00 0.00 0.00 2.40
168 169 3.070018 CACTTTCTGCCAACGAAGAGAT 58.930 45.455 0.00 0.00 0.00 2.75
169 170 2.102420 TCACTTTCTGCCAACGAAGAGA 59.898 45.455 0.00 0.00 0.00 3.10
170 171 2.483876 TCACTTTCTGCCAACGAAGAG 58.516 47.619 0.00 0.00 0.00 2.85
171 172 2.613026 TCACTTTCTGCCAACGAAGA 57.387 45.000 0.00 0.00 0.00 2.87
172 173 3.312421 TCTTTCACTTTCTGCCAACGAAG 59.688 43.478 0.00 0.00 0.00 3.79
173 174 3.275143 TCTTTCACTTTCTGCCAACGAA 58.725 40.909 0.00 0.00 0.00 3.85
174 175 2.912771 TCTTTCACTTTCTGCCAACGA 58.087 42.857 0.00 0.00 0.00 3.85
175 176 3.904136 ATCTTTCACTTTCTGCCAACG 57.096 42.857 0.00 0.00 0.00 4.10
176 177 5.461526 GGTAATCTTTCACTTTCTGCCAAC 58.538 41.667 0.00 0.00 0.00 3.77
177 178 4.522789 GGGTAATCTTTCACTTTCTGCCAA 59.477 41.667 0.00 0.00 0.00 4.52
178 179 4.079253 GGGTAATCTTTCACTTTCTGCCA 58.921 43.478 0.00 0.00 0.00 4.92
179 180 4.336280 AGGGTAATCTTTCACTTTCTGCC 58.664 43.478 0.00 0.00 0.00 4.85
180 181 5.966742 AAGGGTAATCTTTCACTTTCTGC 57.033 39.130 0.00 0.00 0.00 4.26
181 182 7.510549 TCAAAGGGTAATCTTTCACTTTCTG 57.489 36.000 0.00 0.00 35.04 3.02
182 183 8.712228 AATCAAAGGGTAATCTTTCACTTTCT 57.288 30.769 0.00 0.00 35.04 2.52
185 186 8.803235 GGTAAATCAAAGGGTAATCTTTCACTT 58.197 33.333 0.00 0.00 35.04 3.16
186 187 8.170730 AGGTAAATCAAAGGGTAATCTTTCACT 58.829 33.333 0.00 0.00 35.04 3.41
187 188 8.244113 CAGGTAAATCAAAGGGTAATCTTTCAC 58.756 37.037 0.00 0.00 35.04 3.18
188 189 7.396055 CCAGGTAAATCAAAGGGTAATCTTTCA 59.604 37.037 0.00 0.00 35.04 2.69
189 190 7.396339 ACCAGGTAAATCAAAGGGTAATCTTTC 59.604 37.037 0.00 0.00 35.04 2.62
190 191 7.178451 CACCAGGTAAATCAAAGGGTAATCTTT 59.822 37.037 0.00 0.00 37.44 2.52
191 192 6.663523 CACCAGGTAAATCAAAGGGTAATCTT 59.336 38.462 0.00 0.00 0.00 2.40
192 193 6.187682 CACCAGGTAAATCAAAGGGTAATCT 58.812 40.000 0.00 0.00 0.00 2.40
193 194 5.359860 CCACCAGGTAAATCAAAGGGTAATC 59.640 44.000 0.00 0.00 0.00 1.75
194 195 5.015817 TCCACCAGGTAAATCAAAGGGTAAT 59.984 40.000 0.00 0.00 35.89 1.89
195 196 4.354387 TCCACCAGGTAAATCAAAGGGTAA 59.646 41.667 0.00 0.00 35.89 2.85
196 197 3.917629 TCCACCAGGTAAATCAAAGGGTA 59.082 43.478 0.00 0.00 35.89 3.69
197 198 2.719705 TCCACCAGGTAAATCAAAGGGT 59.280 45.455 0.00 0.00 35.89 4.34
198 199 3.356290 CTCCACCAGGTAAATCAAAGGG 58.644 50.000 0.00 0.00 35.89 3.95
199 200 2.755103 GCTCCACCAGGTAAATCAAAGG 59.245 50.000 0.00 0.00 35.89 3.11
200 201 3.420893 TGCTCCACCAGGTAAATCAAAG 58.579 45.455 0.00 0.00 35.89 2.77
201 202 3.517296 TGCTCCACCAGGTAAATCAAA 57.483 42.857 0.00 0.00 35.89 2.69
202 203 3.073798 TCTTGCTCCACCAGGTAAATCAA 59.926 43.478 0.00 0.00 35.89 2.57
203 204 2.642311 TCTTGCTCCACCAGGTAAATCA 59.358 45.455 0.00 0.00 35.89 2.57
204 205 3.350219 TCTTGCTCCACCAGGTAAATC 57.650 47.619 0.00 0.00 35.89 2.17
205 206 3.806949 TTCTTGCTCCACCAGGTAAAT 57.193 42.857 0.00 0.00 35.89 1.40
206 207 3.806949 ATTCTTGCTCCACCAGGTAAA 57.193 42.857 0.00 0.00 35.89 2.01
207 208 3.806949 AATTCTTGCTCCACCAGGTAA 57.193 42.857 0.00 0.00 35.89 2.85
208 209 3.844211 ACTAATTCTTGCTCCACCAGGTA 59.156 43.478 0.00 0.00 35.89 3.08
209 210 2.644798 ACTAATTCTTGCTCCACCAGGT 59.355 45.455 0.00 0.00 35.89 4.00
210 211 3.356529 ACTAATTCTTGCTCCACCAGG 57.643 47.619 0.00 0.00 0.00 4.45
211 212 3.873952 GCTACTAATTCTTGCTCCACCAG 59.126 47.826 0.00 0.00 0.00 4.00
212 213 3.519510 AGCTACTAATTCTTGCTCCACCA 59.480 43.478 0.00 0.00 0.00 4.17
213 214 3.873952 CAGCTACTAATTCTTGCTCCACC 59.126 47.826 0.00 0.00 0.00 4.61
214 215 4.759782 TCAGCTACTAATTCTTGCTCCAC 58.240 43.478 0.00 0.00 0.00 4.02
215 216 5.620738 ATCAGCTACTAATTCTTGCTCCA 57.379 39.130 0.00 0.00 0.00 3.86
216 217 6.425417 GGTAATCAGCTACTAATTCTTGCTCC 59.575 42.308 0.00 0.00 0.00 4.70
217 218 6.986817 TGGTAATCAGCTACTAATTCTTGCTC 59.013 38.462 0.00 0.00 0.00 4.26
218 219 6.889198 TGGTAATCAGCTACTAATTCTTGCT 58.111 36.000 0.00 0.00 0.00 3.91
219 220 7.553881 TTGGTAATCAGCTACTAATTCTTGC 57.446 36.000 0.00 0.00 0.00 4.01
239 240 8.034804 GCTTGACACCAGAATATTTAATTTGGT 58.965 33.333 0.00 0.00 39.38 3.67
240 241 8.034215 TGCTTGACACCAGAATATTTAATTTGG 58.966 33.333 0.00 0.00 0.00 3.28
241 242 8.984891 TGCTTGACACCAGAATATTTAATTTG 57.015 30.769 0.00 0.00 0.00 2.32
242 243 9.590451 CATGCTTGACACCAGAATATTTAATTT 57.410 29.630 0.00 0.00 0.00 1.82
243 244 8.199449 CCATGCTTGACACCAGAATATTTAATT 58.801 33.333 0.22 0.00 0.00 1.40
244 245 7.342799 ACCATGCTTGACACCAGAATATTTAAT 59.657 33.333 0.22 0.00 0.00 1.40
245 246 6.663093 ACCATGCTTGACACCAGAATATTTAA 59.337 34.615 0.22 0.00 0.00 1.52
246 247 6.186957 ACCATGCTTGACACCAGAATATTTA 58.813 36.000 0.22 0.00 0.00 1.40
247 248 5.018809 ACCATGCTTGACACCAGAATATTT 58.981 37.500 0.22 0.00 0.00 1.40
248 249 4.603131 ACCATGCTTGACACCAGAATATT 58.397 39.130 0.22 0.00 0.00 1.28
249 250 4.240881 ACCATGCTTGACACCAGAATAT 57.759 40.909 0.22 0.00 0.00 1.28
250 251 3.719268 ACCATGCTTGACACCAGAATA 57.281 42.857 0.22 0.00 0.00 1.75
251 252 2.592102 ACCATGCTTGACACCAGAAT 57.408 45.000 0.22 0.00 0.00 2.40
252 253 2.363306 AACCATGCTTGACACCAGAA 57.637 45.000 0.22 0.00 0.00 3.02
253 254 2.363306 AAACCATGCTTGACACCAGA 57.637 45.000 0.22 0.00 0.00 3.86
254 255 3.507233 ACATAAACCATGCTTGACACCAG 59.493 43.478 0.22 0.00 38.29 4.00
255 256 3.495331 ACATAAACCATGCTTGACACCA 58.505 40.909 0.22 0.00 38.29 4.17
256 257 5.590259 AGATACATAAACCATGCTTGACACC 59.410 40.000 0.22 0.00 38.29 4.16
257 258 6.683974 AGATACATAAACCATGCTTGACAC 57.316 37.500 0.22 0.00 38.29 3.67
258 259 6.658816 ACAAGATACATAAACCATGCTTGACA 59.341 34.615 0.00 0.00 36.51 3.58
259 260 7.088589 ACAAGATACATAAACCATGCTTGAC 57.911 36.000 0.00 0.00 36.51 3.18
260 261 7.701539 AACAAGATACATAAACCATGCTTGA 57.298 32.000 0.00 0.00 36.51 3.02
261 262 8.246180 AGAAACAAGATACATAAACCATGCTTG 58.754 33.333 0.00 0.00 37.83 4.01
262 263 8.353423 AGAAACAAGATACATAAACCATGCTT 57.647 30.769 0.00 0.00 38.29 3.91
263 264 7.944729 AGAAACAAGATACATAAACCATGCT 57.055 32.000 0.00 0.00 38.29 3.79
264 265 9.503427 GTAAGAAACAAGATACATAAACCATGC 57.497 33.333 0.00 0.00 38.29 4.06
266 267 9.975218 AGGTAAGAAACAAGATACATAAACCAT 57.025 29.630 0.00 0.00 0.00 3.55
300 301 8.547069 CGAGAAGCAAATTTGTATTTTTCCAAA 58.453 29.630 19.03 0.00 35.25 3.28
301 302 8.071122 CGAGAAGCAAATTTGTATTTTTCCAA 57.929 30.769 19.03 0.00 31.63 3.53
302 303 7.636259 CGAGAAGCAAATTTGTATTTTTCCA 57.364 32.000 19.03 0.00 31.63 3.53
306 307 8.724750 CTTCCGCGAGAAGCAAATTTGTATTTT 61.725 37.037 19.03 9.86 45.38 1.82
307 308 7.327712 CTTCCGCGAGAAGCAAATTTGTATTT 61.328 38.462 19.03 11.27 45.38 1.40
308 309 5.899837 CTTCCGCGAGAAGCAAATTTGTATT 60.900 40.000 19.03 13.91 45.38 1.89
309 310 4.437390 CTTCCGCGAGAAGCAAATTTGTAT 60.437 41.667 19.03 8.61 45.38 2.29
310 311 3.120338 CTTCCGCGAGAAGCAAATTTGTA 60.120 43.478 19.03 0.00 45.38 2.41
311 312 2.350772 CTTCCGCGAGAAGCAAATTTGT 60.351 45.455 19.03 0.26 45.38 2.83
312 313 2.245096 CTTCCGCGAGAAGCAAATTTG 58.755 47.619 19.55 14.03 45.38 2.32
313 314 2.619013 CTTCCGCGAGAAGCAAATTT 57.381 45.000 19.55 0.00 45.38 1.82
325 326 2.145905 GCAAATTCGTGCTTCCGCG 61.146 57.895 0.00 0.00 45.83 6.46
326 327 1.801512 GGCAAATTCGTGCTTCCGC 60.802 57.895 2.32 0.00 44.31 5.54
327 328 0.240945 AAGGCAAATTCGTGCTTCCG 59.759 50.000 2.32 0.00 44.31 4.30
328 329 1.729149 CGAAGGCAAATTCGTGCTTCC 60.729 52.381 9.11 0.00 45.37 3.46
329 330 1.606606 CGAAGGCAAATTCGTGCTTC 58.393 50.000 9.11 4.03 45.37 3.86
330 331 3.773117 CGAAGGCAAATTCGTGCTT 57.227 47.368 9.11 0.00 45.37 3.91
345 346 3.787785 TCACAACTGTACTTCTTGCGAA 58.212 40.909 0.00 0.00 0.00 4.70
346 347 3.446310 TCACAACTGTACTTCTTGCGA 57.554 42.857 0.00 0.00 0.00 5.10
347 348 4.732285 AATCACAACTGTACTTCTTGCG 57.268 40.909 0.00 0.00 0.00 4.85
348 349 6.494842 TGAAAATCACAACTGTACTTCTTGC 58.505 36.000 0.00 0.00 0.00 4.01
349 350 8.909708 TTTGAAAATCACAACTGTACTTCTTG 57.090 30.769 0.00 0.00 0.00 3.02
350 351 9.573133 CTTTTGAAAATCACAACTGTACTTCTT 57.427 29.630 0.00 0.00 0.00 2.52
351 352 8.190784 CCTTTTGAAAATCACAACTGTACTTCT 58.809 33.333 0.00 0.00 0.00 2.85
352 353 8.188139 TCCTTTTGAAAATCACAACTGTACTTC 58.812 33.333 0.00 0.00 0.00 3.01
353 354 8.062065 TCCTTTTGAAAATCACAACTGTACTT 57.938 30.769 0.00 0.00 0.00 2.24
354 355 7.639113 TCCTTTTGAAAATCACAACTGTACT 57.361 32.000 0.00 0.00 0.00 2.73
355 356 8.696410 TTTCCTTTTGAAAATCACAACTGTAC 57.304 30.769 0.00 0.00 39.98 2.90
381 382 3.555547 GCACAGTTGCGGATTTTCTTTTT 59.444 39.130 0.00 0.00 39.50 1.94
382 383 3.123050 GCACAGTTGCGGATTTTCTTTT 58.877 40.909 0.00 0.00 39.50 2.27
383 384 2.742774 GCACAGTTGCGGATTTTCTTT 58.257 42.857 0.00 0.00 39.50 2.52
384 385 2.422276 GCACAGTTGCGGATTTTCTT 57.578 45.000 0.00 0.00 39.50 2.52
395 396 2.281761 AGCCCGGAAGCACAGTTG 60.282 61.111 0.73 0.00 34.23 3.16
396 397 2.032681 GAGCCCGGAAGCACAGTT 59.967 61.111 0.73 0.00 34.23 3.16
397 398 4.021925 GGAGCCCGGAAGCACAGT 62.022 66.667 0.73 0.00 34.23 3.55
398 399 3.710722 AGGAGCCCGGAAGCACAG 61.711 66.667 0.73 0.00 34.23 3.66
399 400 4.020617 CAGGAGCCCGGAAGCACA 62.021 66.667 0.73 0.00 34.23 4.57
400 401 1.972660 ATACAGGAGCCCGGAAGCAC 61.973 60.000 0.73 0.00 34.23 4.40
401 402 1.271840 AATACAGGAGCCCGGAAGCA 61.272 55.000 0.73 0.00 34.23 3.91
402 403 0.107165 AAATACAGGAGCCCGGAAGC 60.107 55.000 0.73 0.00 0.00 3.86
403 404 2.420058 AAAATACAGGAGCCCGGAAG 57.580 50.000 0.73 0.00 0.00 3.46
404 405 2.224917 ACAAAAATACAGGAGCCCGGAA 60.225 45.455 0.73 0.00 0.00 4.30
405 406 1.353022 ACAAAAATACAGGAGCCCGGA 59.647 47.619 0.73 0.00 0.00 5.14
406 407 1.834188 ACAAAAATACAGGAGCCCGG 58.166 50.000 0.00 0.00 0.00 5.73
407 408 3.934457 AAACAAAAATACAGGAGCCCG 57.066 42.857 0.00 0.00 0.00 6.13
408 409 4.956085 ACAAAACAAAAATACAGGAGCCC 58.044 39.130 0.00 0.00 0.00 5.19
409 410 6.918892 AAACAAAACAAAAATACAGGAGCC 57.081 33.333 0.00 0.00 0.00 4.70
433 434 9.804758 ACCGACAACAAAAACAAATAATAGAAA 57.195 25.926 0.00 0.00 0.00 2.52
440 441 9.804758 AGAAAATACCGACAACAAAAACAAATA 57.195 25.926 0.00 0.00 0.00 1.40
441 442 8.599774 CAGAAAATACCGACAACAAAAACAAAT 58.400 29.630 0.00 0.00 0.00 2.32
442 443 7.599245 ACAGAAAATACCGACAACAAAAACAAA 59.401 29.630 0.00 0.00 0.00 2.83
443 444 7.091443 ACAGAAAATACCGACAACAAAAACAA 58.909 30.769 0.00 0.00 0.00 2.83
444 445 6.622549 ACAGAAAATACCGACAACAAAAACA 58.377 32.000 0.00 0.00 0.00 2.83
445 446 7.514573 AACAGAAAATACCGACAACAAAAAC 57.485 32.000 0.00 0.00 0.00 2.43
446 447 8.535690 AAAACAGAAAATACCGACAACAAAAA 57.464 26.923 0.00 0.00 0.00 1.94
447 448 8.535690 AAAAACAGAAAATACCGACAACAAAA 57.464 26.923 0.00 0.00 0.00 2.44
448 449 8.030106 AGAAAAACAGAAAATACCGACAACAAA 58.970 29.630 0.00 0.00 0.00 2.83
449 450 7.540299 AGAAAAACAGAAAATACCGACAACAA 58.460 30.769 0.00 0.00 0.00 2.83
450 451 7.090953 AGAAAAACAGAAAATACCGACAACA 57.909 32.000 0.00 0.00 0.00 3.33
451 452 7.980742 AAGAAAAACAGAAAATACCGACAAC 57.019 32.000 0.00 0.00 0.00 3.32
452 453 7.429920 CGAAAGAAAAACAGAAAATACCGACAA 59.570 33.333 0.00 0.00 0.00 3.18
453 454 6.908284 CGAAAGAAAAACAGAAAATACCGACA 59.092 34.615 0.00 0.00 0.00 4.35
454 455 6.908820 ACGAAAGAAAAACAGAAAATACCGAC 59.091 34.615 0.00 0.00 0.00 4.79
455 456 6.908284 CACGAAAGAAAAACAGAAAATACCGA 59.092 34.615 0.00 0.00 0.00 4.69
456 457 6.908284 TCACGAAAGAAAAACAGAAAATACCG 59.092 34.615 0.00 0.00 0.00 4.02
457 458 8.623310 TTCACGAAAGAAAAACAGAAAATACC 57.377 30.769 0.00 0.00 0.00 2.73
482 483 5.631929 GGCAATAGGTTTCGACGAAATTTTT 59.368 36.000 24.48 14.34 33.97 1.94
483 484 5.158494 GGCAATAGGTTTCGACGAAATTTT 58.842 37.500 24.48 15.37 33.97 1.82
484 485 4.216687 TGGCAATAGGTTTCGACGAAATTT 59.783 37.500 24.48 17.53 33.97 1.82
485 486 3.754323 TGGCAATAGGTTTCGACGAAATT 59.246 39.130 24.48 17.84 33.97 1.82
486 487 3.340034 TGGCAATAGGTTTCGACGAAAT 58.660 40.909 24.48 13.13 33.97 2.17
487 488 2.768698 TGGCAATAGGTTTCGACGAAA 58.231 42.857 18.66 18.66 0.00 3.46
488 489 2.459060 TGGCAATAGGTTTCGACGAA 57.541 45.000 6.10 6.10 0.00 3.85
489 490 2.276201 CATGGCAATAGGTTTCGACGA 58.724 47.619 0.00 0.00 0.00 4.20
490 491 1.330521 CCATGGCAATAGGTTTCGACG 59.669 52.381 0.00 0.00 0.00 5.12
491 492 2.365582 ACCATGGCAATAGGTTTCGAC 58.634 47.619 13.04 0.00 29.58 4.20
492 493 2.799126 ACCATGGCAATAGGTTTCGA 57.201 45.000 13.04 0.00 29.58 3.71
493 494 4.389374 AGATACCATGGCAATAGGTTTCG 58.611 43.478 13.04 0.00 38.09 3.46
494 495 6.534634 ACTAGATACCATGGCAATAGGTTTC 58.465 40.000 13.04 14.38 36.87 2.78
495 496 6.515512 ACTAGATACCATGGCAATAGGTTT 57.484 37.500 13.04 7.24 36.87 3.27
496 497 6.515512 AACTAGATACCATGGCAATAGGTT 57.484 37.500 13.04 8.17 36.87 3.50
497 498 6.515512 AAACTAGATACCATGGCAATAGGT 57.484 37.500 13.04 13.12 39.41 3.08
498 499 5.639506 CGAAACTAGATACCATGGCAATAGG 59.360 44.000 13.04 1.03 0.00 2.57
499 500 6.455647 TCGAAACTAGATACCATGGCAATAG 58.544 40.000 13.04 11.53 0.00 1.73
500 501 6.413783 TCGAAACTAGATACCATGGCAATA 57.586 37.500 13.04 0.00 0.00 1.90
501 502 5.290493 TCGAAACTAGATACCATGGCAAT 57.710 39.130 13.04 5.67 0.00 3.56
502 503 4.746535 TCGAAACTAGATACCATGGCAA 57.253 40.909 13.04 0.00 0.00 4.52
503 504 4.746535 TTCGAAACTAGATACCATGGCA 57.253 40.909 13.04 0.00 0.00 4.92
504 505 6.483640 AGATTTTCGAAACTAGATACCATGGC 59.516 38.462 13.04 0.00 0.00 4.40
505 506 8.077836 GAGATTTTCGAAACTAGATACCATGG 57.922 38.462 10.79 11.19 0.00 3.66
528 529 2.604914 CCGTTGGATTTCTCACATCGAG 59.395 50.000 0.00 0.00 43.80 4.04
529 530 2.028476 ACCGTTGGATTTCTCACATCGA 60.028 45.455 0.00 0.00 31.12 3.59
530 531 2.346803 ACCGTTGGATTTCTCACATCG 58.653 47.619 0.00 0.00 0.00 3.84
531 532 5.873179 TTTACCGTTGGATTTCTCACATC 57.127 39.130 0.00 0.00 0.00 3.06
532 533 6.443792 GTTTTTACCGTTGGATTTCTCACAT 58.556 36.000 0.00 0.00 0.00 3.21
533 534 5.504337 CGTTTTTACCGTTGGATTTCTCACA 60.504 40.000 0.00 0.00 0.00 3.58
534 535 4.907582 CGTTTTTACCGTTGGATTTCTCAC 59.092 41.667 0.00 0.00 0.00 3.51
535 536 4.815308 TCGTTTTTACCGTTGGATTTCTCA 59.185 37.500 0.00 0.00 0.00 3.27
536 537 5.347012 TCGTTTTTACCGTTGGATTTCTC 57.653 39.130 0.00 0.00 0.00 2.87
537 538 5.106436 GGATCGTTTTTACCGTTGGATTTCT 60.106 40.000 0.00 0.00 0.00 2.52
538 539 5.090757 GGATCGTTTTTACCGTTGGATTTC 58.909 41.667 0.00 0.00 0.00 2.17
539 540 4.519730 TGGATCGTTTTTACCGTTGGATTT 59.480 37.500 0.00 0.00 0.00 2.17
540 541 4.073549 TGGATCGTTTTTACCGTTGGATT 58.926 39.130 0.00 0.00 0.00 3.01
541 542 3.677190 TGGATCGTTTTTACCGTTGGAT 58.323 40.909 0.00 0.00 0.00 3.41
542 543 3.123157 TGGATCGTTTTTACCGTTGGA 57.877 42.857 0.00 0.00 0.00 3.53
543 544 3.003482 TGTTGGATCGTTTTTACCGTTGG 59.997 43.478 0.00 0.00 0.00 3.77
544 545 4.212213 TGTTGGATCGTTTTTACCGTTG 57.788 40.909 0.00 0.00 0.00 4.10
545 546 5.441709 AATGTTGGATCGTTTTTACCGTT 57.558 34.783 0.00 0.00 0.00 4.44
546 547 5.216648 CAAATGTTGGATCGTTTTTACCGT 58.783 37.500 0.00 0.00 0.00 4.83
547 548 5.739237 CAAATGTTGGATCGTTTTTACCG 57.261 39.130 0.00 0.00 0.00 4.02
561 562 6.092092 TCTTAAATCGTGCATCCAAATGTTG 58.908 36.000 0.00 0.00 35.18 3.33
562 563 6.266168 TCTTAAATCGTGCATCCAAATGTT 57.734 33.333 0.00 0.00 35.18 2.71
563 564 5.895636 TCTTAAATCGTGCATCCAAATGT 57.104 34.783 0.00 0.00 35.18 2.71
594 595 7.845617 TTCATAGATGCGTTTTACACAAAAC 57.154 32.000 3.46 3.46 46.64 2.43
595 596 8.858003 TTTTCATAGATGCGTTTTACACAAAA 57.142 26.923 0.00 0.00 0.00 2.44
596 597 8.346300 TCTTTTCATAGATGCGTTTTACACAAA 58.654 29.630 0.00 0.00 0.00 2.83
597 598 7.866729 TCTTTTCATAGATGCGTTTTACACAA 58.133 30.769 0.00 0.00 0.00 3.33
598 599 7.428282 TCTTTTCATAGATGCGTTTTACACA 57.572 32.000 0.00 0.00 0.00 3.72
599 600 9.982291 TTATCTTTTCATAGATGCGTTTTACAC 57.018 29.630 0.00 0.00 36.34 2.90
627 628 6.660949 CCCTTTATCATGACCTGAGAGTTTTT 59.339 38.462 0.00 0.00 37.28 1.94
628 629 6.012508 TCCCTTTATCATGACCTGAGAGTTTT 60.013 38.462 0.00 0.00 37.28 2.43
629 630 5.488919 TCCCTTTATCATGACCTGAGAGTTT 59.511 40.000 0.00 0.00 37.28 2.66
630 631 5.032846 TCCCTTTATCATGACCTGAGAGTT 58.967 41.667 0.00 0.00 37.28 3.01
631 632 4.407296 GTCCCTTTATCATGACCTGAGAGT 59.593 45.833 0.00 0.00 37.28 3.24
632 633 4.202305 GGTCCCTTTATCATGACCTGAGAG 60.202 50.000 0.00 0.00 43.16 3.20
633 634 3.711704 GGTCCCTTTATCATGACCTGAGA 59.288 47.826 0.00 0.00 43.16 3.27
634 635 3.181450 GGGTCCCTTTATCATGACCTGAG 60.181 52.174 0.00 0.00 45.29 3.35
635 636 2.777692 GGGTCCCTTTATCATGACCTGA 59.222 50.000 0.00 0.00 45.29 3.86
636 637 2.509548 TGGGTCCCTTTATCATGACCTG 59.490 50.000 10.00 0.00 45.29 4.00
637 638 2.858644 TGGGTCCCTTTATCATGACCT 58.141 47.619 10.00 0.00 45.29 3.85
638 639 3.884037 ATGGGTCCCTTTATCATGACC 57.116 47.619 10.00 0.00 45.25 4.02
639 640 4.702131 GCATATGGGTCCCTTTATCATGAC 59.298 45.833 10.00 0.00 0.00 3.06
640 641 4.353489 TGCATATGGGTCCCTTTATCATGA 59.647 41.667 10.00 0.00 0.00 3.07
641 642 4.665451 TGCATATGGGTCCCTTTATCATG 58.335 43.478 10.00 4.82 0.00 3.07
642 643 4.812096 GCTGCATATGGGTCCCTTTATCAT 60.812 45.833 10.00 0.00 0.00 2.45
643 644 3.498481 GCTGCATATGGGTCCCTTTATCA 60.498 47.826 10.00 1.26 0.00 2.15
644 645 3.084786 GCTGCATATGGGTCCCTTTATC 58.915 50.000 10.00 0.00 0.00 1.75
645 646 2.225117 GGCTGCATATGGGTCCCTTTAT 60.225 50.000 10.00 3.86 0.00 1.40
646 647 1.144913 GGCTGCATATGGGTCCCTTTA 59.855 52.381 10.00 1.37 0.00 1.85
647 648 0.106015 GGCTGCATATGGGTCCCTTT 60.106 55.000 10.00 0.00 0.00 3.11
648 649 0.995675 AGGCTGCATATGGGTCCCTT 60.996 55.000 10.00 5.37 0.00 3.95
649 650 0.104462 TAGGCTGCATATGGGTCCCT 60.104 55.000 10.00 0.00 0.00 4.20
650 651 0.995024 ATAGGCTGCATATGGGTCCC 59.005 55.000 5.96 0.00 0.00 4.46
651 652 1.630369 TGATAGGCTGCATATGGGTCC 59.370 52.381 11.97 0.00 0.00 4.46
652 653 2.304180 AGTGATAGGCTGCATATGGGTC 59.696 50.000 11.97 0.00 0.00 4.46
653 654 2.342659 AGTGATAGGCTGCATATGGGT 58.657 47.619 11.97 0.00 0.00 4.51
654 655 3.079578 CAAGTGATAGGCTGCATATGGG 58.920 50.000 11.97 0.00 0.00 4.00
655 656 3.501062 CACAAGTGATAGGCTGCATATGG 59.499 47.826 11.97 0.00 0.00 2.74
656 657 4.383173 TCACAAGTGATAGGCTGCATATG 58.617 43.478 11.97 0.00 34.14 1.78
657 658 4.346127 TCTCACAAGTGATAGGCTGCATAT 59.654 41.667 6.51 6.51 39.13 1.78
658 659 3.706086 TCTCACAAGTGATAGGCTGCATA 59.294 43.478 3.01 0.00 39.13 3.14
659 660 2.502947 TCTCACAAGTGATAGGCTGCAT 59.497 45.455 3.01 0.00 39.13 3.96
660 661 1.901833 TCTCACAAGTGATAGGCTGCA 59.098 47.619 3.01 0.00 39.13 4.41
661 662 2.548875 CTCTCACAAGTGATAGGCTGC 58.451 52.381 3.01 0.00 39.13 5.25
662 663 2.548875 GCTCTCACAAGTGATAGGCTG 58.451 52.381 14.81 0.00 39.13 4.85
663 664 1.135915 CGCTCTCACAAGTGATAGGCT 59.864 52.381 14.81 0.00 39.13 4.58
664 665 1.134965 ACGCTCTCACAAGTGATAGGC 60.135 52.381 14.81 12.32 39.13 3.93
665 666 2.164422 TCACGCTCTCACAAGTGATAGG 59.836 50.000 14.81 9.02 38.52 2.57
666 667 3.127721 TCTCACGCTCTCACAAGTGATAG 59.872 47.826 10.28 10.28 41.92 2.08
667 668 3.081804 TCTCACGCTCTCACAAGTGATA 58.918 45.455 3.01 0.00 41.92 2.15
668 669 1.889170 TCTCACGCTCTCACAAGTGAT 59.111 47.619 3.01 0.00 41.92 3.06
669 670 1.318576 TCTCACGCTCTCACAAGTGA 58.681 50.000 2.56 2.56 40.77 3.41
670 671 2.057316 CTTCTCACGCTCTCACAAGTG 58.943 52.381 0.00 0.00 36.06 3.16
671 672 1.957177 TCTTCTCACGCTCTCACAAGT 59.043 47.619 0.00 0.00 0.00 3.16
672 673 2.713895 TCTTCTCACGCTCTCACAAG 57.286 50.000 0.00 0.00 0.00 3.16
673 674 2.558359 TCATCTTCTCACGCTCTCACAA 59.442 45.455 0.00 0.00 0.00 3.33
674 675 2.162681 TCATCTTCTCACGCTCTCACA 58.837 47.619 0.00 0.00 0.00 3.58
675 676 2.163412 ACTCATCTTCTCACGCTCTCAC 59.837 50.000 0.00 0.00 0.00 3.51
676 677 2.441410 ACTCATCTTCTCACGCTCTCA 58.559 47.619 0.00 0.00 0.00 3.27
677 678 3.625764 ACTACTCATCTTCTCACGCTCTC 59.374 47.826 0.00 0.00 0.00 3.20
678 679 3.376859 CACTACTCATCTTCTCACGCTCT 59.623 47.826 0.00 0.00 0.00 4.09
679 680 3.375610 TCACTACTCATCTTCTCACGCTC 59.624 47.826 0.00 0.00 0.00 5.03
680 681 3.348119 TCACTACTCATCTTCTCACGCT 58.652 45.455 0.00 0.00 0.00 5.07
681 682 3.375610 TCTCACTACTCATCTTCTCACGC 59.624 47.826 0.00 0.00 0.00 5.34
682 683 4.495679 GCTCTCACTACTCATCTTCTCACG 60.496 50.000 0.00 0.00 0.00 4.35
683 684 4.640201 AGCTCTCACTACTCATCTTCTCAC 59.360 45.833 0.00 0.00 0.00 3.51
684 685 4.854173 AGCTCTCACTACTCATCTTCTCA 58.146 43.478 0.00 0.00 0.00 3.27
685 686 5.835113 AAGCTCTCACTACTCATCTTCTC 57.165 43.478 0.00 0.00 0.00 2.87
686 687 5.624281 GCAAAGCTCTCACTACTCATCTTCT 60.624 44.000 0.00 0.00 0.00 2.85
687 688 4.566360 GCAAAGCTCTCACTACTCATCTTC 59.434 45.833 0.00 0.00 0.00 2.87
688 689 4.020751 TGCAAAGCTCTCACTACTCATCTT 60.021 41.667 0.00 0.00 0.00 2.40
689 690 3.513119 TGCAAAGCTCTCACTACTCATCT 59.487 43.478 0.00 0.00 0.00 2.90
690 691 3.854666 TGCAAAGCTCTCACTACTCATC 58.145 45.455 0.00 0.00 0.00 2.92
691 692 3.969287 TGCAAAGCTCTCACTACTCAT 57.031 42.857 0.00 0.00 0.00 2.90
692 693 3.751479 TTGCAAAGCTCTCACTACTCA 57.249 42.857 0.00 0.00 0.00 3.41
693 694 3.434984 CCTTTGCAAAGCTCTCACTACTC 59.565 47.826 29.93 0.00 34.69 2.59
694 695 3.181450 ACCTTTGCAAAGCTCTCACTACT 60.181 43.478 29.93 2.47 34.69 2.57
695 696 3.142174 ACCTTTGCAAAGCTCTCACTAC 58.858 45.455 29.93 0.00 34.69 2.73
696 697 3.492102 ACCTTTGCAAAGCTCTCACTA 57.508 42.857 29.93 0.00 34.69 2.74
697 698 2.355010 ACCTTTGCAAAGCTCTCACT 57.645 45.000 29.93 6.01 34.69 3.41
698 699 2.226674 GGTACCTTTGCAAAGCTCTCAC 59.773 50.000 29.93 20.47 34.69 3.51
699 700 2.106511 AGGTACCTTTGCAAAGCTCTCA 59.893 45.455 29.93 11.82 34.69 3.27
700 701 2.744741 GAGGTACCTTTGCAAAGCTCTC 59.255 50.000 29.93 24.87 34.69 3.20
701 702 2.784347 GAGGTACCTTTGCAAAGCTCT 58.216 47.619 29.93 22.05 34.69 4.09
702 703 1.464997 CGAGGTACCTTTGCAAAGCTC 59.535 52.381 29.93 26.34 34.69 4.09
703 704 1.071699 TCGAGGTACCTTTGCAAAGCT 59.928 47.619 29.93 21.83 34.69 3.74
704 705 1.197036 GTCGAGGTACCTTTGCAAAGC 59.803 52.381 29.93 17.96 34.69 3.51
705 706 2.480419 CAGTCGAGGTACCTTTGCAAAG 59.520 50.000 28.69 28.69 35.79 2.77
706 707 2.489971 CAGTCGAGGTACCTTTGCAAA 58.510 47.619 17.53 12.14 0.00 3.68
707 708 1.270625 CCAGTCGAGGTACCTTTGCAA 60.271 52.381 17.53 0.00 0.00 4.08
708 709 0.320374 CCAGTCGAGGTACCTTTGCA 59.680 55.000 17.53 0.00 0.00 4.08
709 710 0.320697 ACCAGTCGAGGTACCTTTGC 59.679 55.000 17.53 9.03 40.98 3.68
710 711 1.616865 TCACCAGTCGAGGTACCTTTG 59.383 52.381 17.53 12.25 40.77 2.77
711 712 2.005370 TCACCAGTCGAGGTACCTTT 57.995 50.000 17.53 0.00 40.77 3.11
712 713 2.233305 ATCACCAGTCGAGGTACCTT 57.767 50.000 17.53 0.00 40.77 3.50
713 714 2.233305 AATCACCAGTCGAGGTACCT 57.767 50.000 16.26 16.26 40.77 3.08
714 715 2.734492 CGAAATCACCAGTCGAGGTACC 60.734 54.545 2.73 2.73 40.77 3.34
715 716 2.527100 CGAAATCACCAGTCGAGGTAC 58.473 52.381 0.00 0.00 40.77 3.34
716 717 1.475280 CCGAAATCACCAGTCGAGGTA 59.525 52.381 0.00 0.00 40.77 3.08
717 718 0.246635 CCGAAATCACCAGTCGAGGT 59.753 55.000 0.00 0.00 44.48 3.85
724 725 3.810373 CGTTCTTTTCCGAAATCACCAG 58.190 45.455 0.00 0.00 0.00 4.00
726 727 2.581637 GCGTTCTTTTCCGAAATCACC 58.418 47.619 0.00 0.00 0.00 4.02
759 760 2.328099 GGCCTGTTTGGTGCTCTCG 61.328 63.158 0.00 0.00 38.35 4.04
765 766 1.333636 TTGGTTGGGCCTGTTTGGTG 61.334 55.000 4.53 0.00 38.35 4.17
810 811 4.641645 TCGTGCTGTTGCCCTGGG 62.642 66.667 8.86 8.86 38.71 4.45
913 918 3.133901 GTGTGGAGTTTGGGTTTTGGATT 59.866 43.478 0.00 0.00 0.00 3.01
924 929 2.551912 GCGTGGGGTGTGGAGTTTG 61.552 63.158 0.00 0.00 0.00 2.93
929 934 2.391724 GAAAGAGCGTGGGGTGTGGA 62.392 60.000 0.00 0.00 0.00 4.02
934 939 3.246687 TTGGAAAGAGCGTGGGGT 58.753 55.556 0.00 0.00 0.00 4.95
947 952 0.178068 GCTATCTGTTCGGCCTTGGA 59.822 55.000 0.00 0.00 0.00 3.53
990 995 2.276740 GTGGCCATGGAGAAGGGG 59.723 66.667 18.40 0.00 0.00 4.79
995 1000 3.405093 GATGCGGTGGCCATGGAGA 62.405 63.158 18.40 0.00 38.85 3.71
1712 1732 0.938713 CTACTCCGGAGCACTAGACG 59.061 60.000 31.56 5.63 0.00 4.18
1768 1788 2.473816 GATGATGACGCATCGAAGGAA 58.526 47.619 12.88 0.00 43.14 3.36
1783 1803 4.494091 ACAAAATCCTCTCCACGATGAT 57.506 40.909 0.00 0.00 0.00 2.45
1824 1844 1.668793 CGAGCACATGGACAGCACA 60.669 57.895 0.00 0.00 0.00 4.57
1884 1904 1.226773 GCTTTAGCGCTGGCAATGG 60.227 57.895 22.90 4.01 43.41 3.16
1906 1934 4.098914 TGTAAACATCTCAGCAAACCCT 57.901 40.909 0.00 0.00 0.00 4.34
1907 1935 4.321230 CCTTGTAAACATCTCAGCAAACCC 60.321 45.833 0.00 0.00 0.00 4.11
1929 1957 3.181531 GCACAATGCGATTTTGTAAAGCC 60.182 43.478 0.00 0.00 35.61 4.35
1943 1971 2.872370 CCTTTAAGCTCAGCACAATGC 58.128 47.619 0.00 0.00 45.46 3.56
1944 1972 2.229543 TGCCTTTAAGCTCAGCACAATG 59.770 45.455 0.00 0.00 0.00 2.82
1986 2014 2.028930 GCTATGGCACTTCTAGGCGTAT 60.029 50.000 0.00 0.00 38.54 3.06
1997 2025 6.995511 TTCGTTTTATAAAGCTATGGCACT 57.004 33.333 3.10 0.00 41.70 4.40
2000 2032 9.463443 AAATGATTCGTTTTATAAAGCTATGGC 57.537 29.630 9.92 0.00 39.06 4.40
2144 2178 1.521423 GACACGGTGTTGAGTTTCGAG 59.479 52.381 15.94 0.00 0.00 4.04
2171 2206 4.367023 TTCGAAGGTGTCCGGCGG 62.367 66.667 22.51 22.51 0.00 6.13
2267 2302 1.032657 CAGACCGGATCGAGTCCTGT 61.033 60.000 9.46 9.52 45.89 4.00
2326 2370 1.873270 TTGCTCCTCTGCGACGCTAA 61.873 55.000 22.08 7.96 35.36 3.09
2342 2386 0.687354 TTCTCCACTGTCCTCCTTGC 59.313 55.000 0.00 0.00 0.00 4.01
2358 2402 0.394488 TCGCTCTCCTCCGATGTTCT 60.394 55.000 0.00 0.00 0.00 3.01
2364 2408 2.511829 CTCGTCGCTCTCCTCCGA 60.512 66.667 0.00 0.00 0.00 4.55
2506 2555 1.666011 AGGCGTGTTCGTCATGTCT 59.334 52.632 0.00 4.46 44.74 3.41
2571 2636 3.542310 GCGAATTAAAATCTTGCACGACC 59.458 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.