Multiple sequence alignment - TraesCS6D01G155700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G155700 chr6D 100.000 3532 0 0 1001 4532 131941049 131937518 0.000000e+00 6523.0
1 TraesCS6D01G155700 chr6D 100.000 663 0 0 1 663 131942049 131941387 0.000000e+00 1225.0
2 TraesCS6D01G155700 chr6D 86.173 716 66 10 3658 4351 352856871 352856167 0.000000e+00 743.0
3 TraesCS6D01G155700 chr6D 85.315 715 56 16 3658 4350 153862684 153861997 0.000000e+00 693.0
4 TraesCS6D01G155700 chr6D 88.253 332 34 4 3652 3979 449174533 449174203 4.250000e-105 392.0
5 TraesCS6D01G155700 chr6D 91.358 81 6 1 1536 1616 13067041 13067120 4.790000e-20 110.0
6 TraesCS6D01G155700 chr6D 87.778 90 10 1 1535 1624 155602046 155601958 2.230000e-18 104.0
7 TraesCS6D01G155700 chr6D 89.157 83 8 1 1541 1623 13067120 13067039 8.020000e-18 102.0
8 TraesCS6D01G155700 chr6D 89.062 64 6 1 1552 1615 220939484 220939546 1.350000e-10 78.7
9 TraesCS6D01G155700 chr6D 90.698 43 3 1 1552 1594 463850418 463850377 6.330000e-04 56.5
10 TraesCS6D01G155700 chr6B 96.536 1732 30 10 1872 3573 229521932 229520201 0.000000e+00 2839.0
11 TraesCS6D01G155700 chr6B 95.991 873 31 4 1001 1872 229522835 229521966 0.000000e+00 1415.0
12 TraesCS6D01G155700 chr6B 93.131 626 37 4 42 663 229523526 229522903 0.000000e+00 913.0
13 TraesCS6D01G155700 chr6B 93.750 96 6 0 3563 3658 229519904 229519809 1.310000e-30 145.0
14 TraesCS6D01G155700 chr6B 87.778 90 10 1 1535 1624 278674698 278674610 2.230000e-18 104.0
15 TraesCS6D01G155700 chr6A 92.699 1082 48 17 2598 3658 170900911 170899840 0.000000e+00 1531.0
16 TraesCS6D01G155700 chr6A 93.273 550 30 5 1001 1547 170902262 170901717 0.000000e+00 804.0
17 TraesCS6D01G155700 chr6A 91.860 516 18 6 1632 2145 170901722 170901229 0.000000e+00 699.0
18 TraesCS6D01G155700 chr6A 90.756 357 18 3 2154 2509 170901249 170900907 3.190000e-126 462.0
19 TraesCS6D01G155700 chr6A 76.517 379 49 24 184 541 170902881 170902522 2.170000e-38 171.0
20 TraesCS6D01G155700 chr6A 92.593 81 5 1 1536 1616 14350988 14351067 1.030000e-21 115.0
21 TraesCS6D01G155700 chr6A 87.778 90 10 1 1535 1624 209391426 209391338 2.230000e-18 104.0
22 TraesCS6D01G155700 chr6A 85.057 87 10 3 1536 1621 53134251 53134167 8.080000e-13 86.1
23 TraesCS6D01G155700 chr1D 91.436 724 29 14 3656 4350 202285509 202284790 0.000000e+00 963.0
24 TraesCS6D01G155700 chr1D 89.422 709 55 8 3654 4347 473869854 473869151 0.000000e+00 876.0
25 TraesCS6D01G155700 chr1D 83.934 722 80 12 3658 4350 22506994 22506280 0.000000e+00 658.0
26 TraesCS6D01G155700 chr1D 88.685 327 32 4 3655 3979 430422713 430422390 1.180000e-105 394.0
27 TraesCS6D01G155700 chr1D 92.308 156 12 0 4377 4532 473868516 473868361 5.900000e-54 222.0
28 TraesCS6D01G155700 chr1D 90.588 85 7 1 1533 1616 445785064 445785148 1.330000e-20 111.0
29 TraesCS6D01G155700 chr1D 87.654 81 9 1 1536 1616 336365982 336365903 4.830000e-15 93.5
30 TraesCS6D01G155700 chr1D 86.420 81 10 1 1536 1616 413217310 413217231 2.250000e-13 87.9
31 TraesCS6D01G155700 chr1D 83.908 87 9 4 1552 1638 7711971 7711890 1.350000e-10 78.7
32 TraesCS6D01G155700 chr5D 87.858 733 47 19 3651 4347 440381744 440381018 0.000000e+00 822.0
33 TraesCS6D01G155700 chr5D 86.778 658 66 9 3700 4347 363222653 363223299 0.000000e+00 713.0
34 TraesCS6D01G155700 chr5D 87.912 91 8 2 1536 1624 259544315 259544226 2.230000e-18 104.0
35 TraesCS6D01G155700 chr5D 87.209 86 9 2 1536 1621 541806181 541806264 3.730000e-16 97.1
36 TraesCS6D01G155700 chr5D 84.375 96 14 1 1528 1623 546858683 546858777 4.830000e-15 93.5
37 TraesCS6D01G155700 chr3D 87.778 720 45 21 3655 4350 579380972 579381672 0.000000e+00 802.0
38 TraesCS6D01G155700 chr3D 87.381 737 44 17 3658 4350 126223562 126222831 0.000000e+00 800.0
39 TraesCS6D01G155700 chr3D 85.673 698 76 14 3655 4341 475300796 475301480 0.000000e+00 713.0
40 TraesCS6D01G155700 chr3D 92.179 179 7 2 4354 4532 579382440 579382611 3.500000e-61 246.0
41 TraesCS6D01G155700 chr3D 94.231 156 9 0 4377 4532 126222035 126221880 5.860000e-59 239.0
42 TraesCS6D01G155700 chr3D 90.341 176 16 1 4357 4532 43540174 43540000 3.530000e-56 230.0
43 TraesCS6D01G155700 chr3D 89.423 104 7 4 1527 1627 108916250 108916352 1.320000e-25 128.0
44 TraesCS6D01G155700 chr3D 86.458 96 10 3 1529 1623 610350742 610350835 8.020000e-18 102.0
45 TraesCS6D01G155700 chr2D 87.169 717 60 14 3658 4347 374109942 374110653 0.000000e+00 785.0
46 TraesCS6D01G155700 chr2D 86.723 708 74 9 3653 4347 291845819 291845119 0.000000e+00 769.0
47 TraesCS6D01G155700 chr2D 93.296 179 11 1 4354 4532 197912144 197912321 3.480000e-66 263.0
48 TraesCS6D01G155700 chr2D 86.364 198 15 2 1675 1872 166196049 166196234 5.940000e-49 206.0
49 TraesCS6D01G155700 chr7D 84.786 723 73 21 3658 4350 619995596 619996311 0.000000e+00 691.0
50 TraesCS6D01G155700 chr3B 78.428 649 89 29 3656 4273 147886651 147887279 4.280000e-100 375.0
51 TraesCS6D01G155700 chr3B 82.699 289 38 8 1001 1277 548075211 548075499 3.500000e-61 246.0
52 TraesCS6D01G155700 chr3B 75.159 157 29 9 4354 4504 610169619 610169467 1.050000e-06 65.8
53 TraesCS6D01G155700 chr7B 89.035 228 24 1 1872 2099 92034123 92033897 9.600000e-72 281.0
54 TraesCS6D01G155700 chr3A 93.855 179 10 1 4354 4532 42452137 42451960 7.470000e-68 268.0
55 TraesCS6D01G155700 chr3A 87.500 96 9 3 1529 1623 744438425 744438518 1.720000e-19 108.0
56 TraesCS6D01G155700 chr7A 91.061 179 15 1 4354 4532 68338808 68338631 1.630000e-59 241.0
57 TraesCS6D01G155700 chr7A 89.266 177 16 3 4354 4528 539454862 539454687 7.630000e-53 219.0
58 TraesCS6D01G155700 chr5A 89.944 179 16 2 4354 4532 221093663 221093487 3.530000e-56 230.0
59 TraesCS6D01G155700 chr2B 85.641 195 16 2 1678 1872 584822661 584822479 1.290000e-45 195.0
60 TraesCS6D01G155700 chr1B 91.736 121 10 0 1872 1992 204930571 204930451 7.800000e-38 169.0
61 TraesCS6D01G155700 chr1B 90.476 84 6 2 1533 1616 401618951 401619032 4.790000e-20 110.0
62 TraesCS6D01G155700 chr1B 97.059 34 1 0 2016 2049 204930452 204930419 1.760000e-04 58.4
63 TraesCS6D01G155700 chr4B 91.765 85 6 1 1532 1616 604049610 604049693 2.860000e-22 117.0
64 TraesCS6D01G155700 chrUn 85.556 90 11 2 1536 1625 341187359 341187272 4.830000e-15 93.5
65 TraesCS6D01G155700 chrUn 89.189 74 5 3 1552 1624 83375614 83375543 6.240000e-14 89.8
66 TraesCS6D01G155700 chr4D 88.060 67 7 1 1555 1621 463465579 463465514 1.350000e-10 78.7
67 TraesCS6D01G155700 chr4D 90.000 60 5 1 1541 1600 70234529 70234587 4.860000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G155700 chr6D 131937518 131942049 4531 True 3874.0 6523 100.0000 1 4532 2 chr6D.!!$R7 4531
1 TraesCS6D01G155700 chr6D 352856167 352856871 704 True 743.0 743 86.1730 3658 4351 1 chr6D.!!$R4 693
2 TraesCS6D01G155700 chr6D 153861997 153862684 687 True 693.0 693 85.3150 3658 4350 1 chr6D.!!$R2 692
3 TraesCS6D01G155700 chr6B 229519809 229523526 3717 True 1328.0 2839 94.8520 42 3658 4 chr6B.!!$R2 3616
4 TraesCS6D01G155700 chr6A 170899840 170902881 3041 True 733.4 1531 89.0210 184 3658 5 chr6A.!!$R3 3474
5 TraesCS6D01G155700 chr1D 202284790 202285509 719 True 963.0 963 91.4360 3656 4350 1 chr1D.!!$R3 694
6 TraesCS6D01G155700 chr1D 22506280 22506994 714 True 658.0 658 83.9340 3658 4350 1 chr1D.!!$R2 692
7 TraesCS6D01G155700 chr1D 473868361 473869854 1493 True 549.0 876 90.8650 3654 4532 2 chr1D.!!$R7 878
8 TraesCS6D01G155700 chr5D 440381018 440381744 726 True 822.0 822 87.8580 3651 4347 1 chr5D.!!$R2 696
9 TraesCS6D01G155700 chr5D 363222653 363223299 646 False 713.0 713 86.7780 3700 4347 1 chr5D.!!$F1 647
10 TraesCS6D01G155700 chr3D 475300796 475301480 684 False 713.0 713 85.6730 3655 4341 1 chr3D.!!$F2 686
11 TraesCS6D01G155700 chr3D 579380972 579382611 1639 False 524.0 802 89.9785 3655 4532 2 chr3D.!!$F4 877
12 TraesCS6D01G155700 chr3D 126221880 126223562 1682 True 519.5 800 90.8060 3658 4532 2 chr3D.!!$R2 874
13 TraesCS6D01G155700 chr2D 374109942 374110653 711 False 785.0 785 87.1690 3658 4347 1 chr2D.!!$F3 689
14 TraesCS6D01G155700 chr2D 291845119 291845819 700 True 769.0 769 86.7230 3653 4347 1 chr2D.!!$R1 694
15 TraesCS6D01G155700 chr7D 619995596 619996311 715 False 691.0 691 84.7860 3658 4350 1 chr7D.!!$F1 692
16 TraesCS6D01G155700 chr3B 147886651 147887279 628 False 375.0 375 78.4280 3656 4273 1 chr3B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.253327 AGAAGCGTCCTTGAATCCCC 59.747 55.0 0.0 0.00 0.00 4.81 F
1096 1178 0.534873 GACTCCCCTCTCACTGAAGC 59.465 60.0 0.0 0.00 0.00 3.86 F
1149 1231 0.460987 AGCGATTCCGAGCTCAAAGG 60.461 55.0 15.4 7.19 39.98 3.11 F
1737 1823 0.759346 AGACCGCAAAGAAGACCACT 59.241 50.0 0.0 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1132 1214 0.811616 CCCCTTTGAGCTCGGAATCG 60.812 60.000 9.64 0.44 37.82 3.34 R
2703 2826 5.078411 ACAAGTGACTAGTAGAATGGCAG 57.922 43.478 3.59 0.00 0.00 4.85 R
3332 3455 1.249407 GTCGTCTGTCTCAAGGACCT 58.751 55.000 0.00 0.00 43.89 3.85 R
3737 4196 0.114364 AAAAACGGGCTTCTGGGGAT 59.886 50.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.226437 CGTGGTAAGCAGCTTTGAACAT 59.774 45.455 14.29 0.00 0.00 2.71
128 129 7.543172 AGCAGCTTTGAACATAATGTATTTGTG 59.457 33.333 0.00 0.00 33.02 3.33
141 142 6.647212 ATGTATTTGTGTATATCATCGCCG 57.353 37.500 0.00 0.00 0.00 6.46
149 150 0.805614 ATATCATCGCCGACCTCTCG 59.194 55.000 0.00 0.00 39.83 4.04
169 170 2.688507 GTGATCAGAAGCGTCCTTGAA 58.311 47.619 0.00 0.00 0.00 2.69
174 175 0.253327 AGAAGCGTCCTTGAATCCCC 59.747 55.000 0.00 0.00 0.00 4.81
176 177 0.698818 AAGCGTCCTTGAATCCCCTT 59.301 50.000 0.00 0.00 0.00 3.95
259 260 3.118112 CCTAAGACCTGCATCCACATTCT 60.118 47.826 0.00 0.00 0.00 2.40
263 264 5.480642 AGACCTGCATCCACATTCTATAG 57.519 43.478 0.00 0.00 0.00 1.31
373 386 1.803334 TGACCACGAGAATTTTCCCG 58.197 50.000 0.00 0.00 34.40 5.14
385 398 0.818296 TTTTCCCGTGGTGTTTGGTG 59.182 50.000 0.00 0.00 0.00 4.17
392 411 2.997986 CCGTGGTGTTTGGTGATAGTAC 59.002 50.000 0.00 0.00 0.00 2.73
424 443 0.978667 TACATGGAAGCTGCGGGGTA 60.979 55.000 0.00 0.00 0.00 3.69
435 454 2.096980 GCTGCGGGGTAGAAAACATAAC 59.903 50.000 0.00 0.00 0.00 1.89
568 628 2.202743 GTGCGCTGAGGCATCGTA 60.203 61.111 9.73 0.00 45.99 3.43
634 712 1.077005 ACTAAATTGGCCTTGGCCTCA 59.923 47.619 28.37 16.99 0.00 3.86
1063 1145 2.042843 CTCCGCCCAGAGGTACCT 60.043 66.667 16.26 16.26 34.57 3.08
1096 1178 0.534873 GACTCCCCTCTCACTGAAGC 59.465 60.000 0.00 0.00 0.00 3.86
1149 1231 0.460987 AGCGATTCCGAGCTCAAAGG 60.461 55.000 15.40 7.19 39.98 3.11
1153 1235 1.485066 GATTCCGAGCTCAAAGGGGTA 59.515 52.381 15.40 0.22 0.00 3.69
1207 1289 3.305516 GCCCTGTGTTGCTTGGGG 61.306 66.667 0.00 0.00 39.99 4.96
1277 1359 6.804534 TGTTTGTTAATTTCGTTGCAGAAG 57.195 33.333 0.00 0.00 0.00 2.85
1281 1363 5.516090 TGTTAATTTCGTTGCAGAAGAACC 58.484 37.500 0.95 0.00 0.00 3.62
1364 1448 2.238521 TCCAGTGGCATGACCTTTTTC 58.761 47.619 3.51 0.00 40.22 2.29
1518 1604 6.611642 ACCAATAGTATCTCTGGTTAGCTCAA 59.388 38.462 0.00 0.00 39.14 3.02
1594 1680 5.462034 TTCAATTTTGAACTGCCAAAACG 57.538 34.783 9.65 6.03 45.32 3.60
1642 1728 5.125100 AGTTTACATTTCTCCGTCGTGTA 57.875 39.130 0.00 0.00 0.00 2.90
1713 1799 2.565834 CTCCCCTTCTTCGTAGTTTGGA 59.434 50.000 0.00 0.00 0.00 3.53
1725 1811 2.341846 AGTTTGGAAGAAAGACCGCA 57.658 45.000 0.00 0.00 0.00 5.69
1737 1823 0.759346 AGACCGCAAAGAAGACCACT 59.241 50.000 0.00 0.00 0.00 4.00
1992 2112 2.185387 GTTTCAGGCCAGTCTACCCTA 58.815 52.381 5.01 0.00 0.00 3.53
2172 2295 2.289195 ACTATCACTGTCCGCGGAAAAA 60.289 45.455 32.93 17.77 0.00 1.94
2400 2523 8.567285 AACTAACTTATCCTGGTCATTTCTTG 57.433 34.615 0.00 0.00 0.00 3.02
2513 2636 1.207329 CCCTGGTTAGTGCACTCTACC 59.793 57.143 30.39 30.39 33.72 3.18
2703 2826 9.099454 AGCTAAGTAAATCTGTTATGTACAAGC 57.901 33.333 0.00 0.00 36.02 4.01
2798 2921 4.012374 TGAATGATGCTTCTCCTTTCCAC 58.988 43.478 0.88 0.00 0.00 4.02
3332 3455 1.527380 GTCGGAAACAAGTGGGCCA 60.527 57.895 0.00 0.00 0.00 5.36
3370 3493 3.326747 GACGAGTTGTGCTAAGTTCCAT 58.673 45.455 0.00 0.00 0.00 3.41
3398 3521 6.381801 CCAAAATCAATGGTGTCTTCACTAC 58.618 40.000 0.00 0.00 43.41 2.73
3406 3529 1.189446 GTGTCTTCACTACGCGTGTTG 59.811 52.381 24.59 18.39 44.16 3.33
3453 3598 8.089597 TCAATGCATGTATTCTGTGTTTTGAAT 58.910 29.630 6.00 0.00 36.87 2.57
3574 4032 2.496470 GTCCAATCCCTACGAAGTGTCT 59.504 50.000 0.00 0.00 45.73 3.41
3618 4076 1.260561 CCGACGGCTTACATTACATGC 59.739 52.381 0.00 0.00 0.00 4.06
3625 4083 2.032924 GCTTACATTACATGCCCCGTTC 59.967 50.000 0.00 0.00 0.00 3.95
3733 4192 2.578664 CCCAAAAATCGGCCCAGC 59.421 61.111 0.00 0.00 0.00 4.85
3769 4232 1.438399 GTTTTTCGCCGGTTTGGGT 59.562 52.632 1.90 0.00 38.63 4.51
3955 4508 0.183014 AGCCTCCATTGATGCCTCAG 59.817 55.000 0.00 0.00 33.08 3.35
4057 4673 2.202987 CGCCACAGCTCTCATCCC 60.203 66.667 0.00 0.00 36.60 3.85
4058 4674 2.191641 GCCACAGCTCTCATCCCC 59.808 66.667 0.00 0.00 35.50 4.81
4059 4675 2.914289 CCACAGCTCTCATCCCCC 59.086 66.667 0.00 0.00 0.00 5.40
4351 4980 1.134580 CGTCCATGACAGAGGAGCATT 60.135 52.381 0.00 0.00 33.85 3.56
4352 4981 2.559440 GTCCATGACAGAGGAGCATTC 58.441 52.381 0.00 0.00 33.85 2.67
4423 5833 3.722957 GCGTAGTTTAGGCGTTGTTAAGC 60.723 47.826 0.00 0.00 0.00 3.09
4444 5854 3.432933 GCCATAGTTTGCATGTGTTTTGG 59.567 43.478 0.00 0.00 0.00 3.28
4445 5855 4.630111 CCATAGTTTGCATGTGTTTTGGT 58.370 39.130 0.00 0.00 0.00 3.67
4446 5856 5.055812 CCATAGTTTGCATGTGTTTTGGTT 58.944 37.500 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.696917 ACTTTCTCCATTTTAAAATAAGTGCTG 57.303 29.630 18.60 6.79 0.00 4.41
96 97 3.923017 ATGTTCAAAGCTGCTTACCAC 57.077 42.857 16.31 12.21 0.00 4.16
97 98 5.476599 ACATTATGTTCAAAGCTGCTTACCA 59.523 36.000 16.31 10.04 0.00 3.25
116 117 8.030106 TCGGCGATGATATACACAAATACATTA 58.970 33.333 4.99 0.00 0.00 1.90
128 129 2.223066 CGAGAGGTCGGCGATGATATAC 60.223 54.545 14.79 0.00 42.87 1.47
141 142 1.532921 CGCTTCTGATCACGAGAGGTC 60.533 57.143 0.00 0.00 0.00 3.85
149 150 2.370281 TCAAGGACGCTTCTGATCAC 57.630 50.000 0.00 0.00 0.00 3.06
259 260 9.625747 TTCTGCATCATTGACCAATAAACTATA 57.374 29.630 0.00 0.00 0.00 1.31
263 264 6.855836 TCTTCTGCATCATTGACCAATAAAC 58.144 36.000 0.00 0.00 0.00 2.01
373 386 6.034161 ACTAGTACTATCACCAAACACCAC 57.966 41.667 2.33 0.00 0.00 4.16
377 390 7.058023 ACACAACTAGTACTATCACCAAACA 57.942 36.000 2.33 0.00 0.00 2.83
392 411 7.677276 GCAGCTTCCATGTATTTACACAACTAG 60.677 40.741 0.00 0.00 39.30 2.57
483 504 0.608035 TTCCCATTCGGTTGCTGTCC 60.608 55.000 0.00 0.00 0.00 4.02
559 580 2.572290 GCTTTACCCAATACGATGCCT 58.428 47.619 0.00 0.00 0.00 4.75
1063 1145 1.144503 GGGAGTCATCGGAGGTAGGTA 59.855 57.143 0.00 0.00 0.00 3.08
1132 1214 0.811616 CCCCTTTGAGCTCGGAATCG 60.812 60.000 9.64 0.44 37.82 3.34
1207 1289 2.608546 GAGTTCAGATGAGCAGCATGTC 59.391 50.000 0.00 0.00 37.34 3.06
1277 1359 9.754382 AATATGCAAGACATGAATTAATGGTTC 57.246 29.630 7.72 0.00 40.06 3.62
1364 1448 8.663911 CCTCTAGCTGAAGATGTAAAAGAAAAG 58.336 37.037 0.00 0.00 0.00 2.27
1447 1533 2.673368 CGTCTCCTCATACCAGCAAAAC 59.327 50.000 0.00 0.00 0.00 2.43
1518 1604 8.211629 AGAGGTAGTACTTCACAAAGATGTTTT 58.788 33.333 14.23 0.00 37.82 2.43
1594 1680 7.902087 ACATCCTCTGCTCCTAAATATAAGAC 58.098 38.462 0.00 0.00 0.00 3.01
1637 1723 9.790389 ATAGAAGATTGAAAGTAGAGTTACACG 57.210 33.333 0.00 0.00 31.96 4.49
1642 1728 9.507329 TGCAAATAGAAGATTGAAAGTAGAGTT 57.493 29.630 0.00 0.00 0.00 3.01
1713 1799 2.879026 GGTCTTCTTTGCGGTCTTTCTT 59.121 45.455 0.00 0.00 0.00 2.52
1725 1811 4.344390 ACCGTTTCTCTAGTGGTCTTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
1992 2112 6.593382 CAGATAGTCTAAAAGCAGAGCAAGTT 59.407 38.462 0.00 0.00 0.00 2.66
2072 2192 8.745590 TGTTTAGTTACATATGCACTCTAGACA 58.254 33.333 10.68 11.78 0.00 3.41
2078 2199 7.827819 TCACTGTTTAGTTACATATGCACTC 57.172 36.000 10.68 0.31 34.07 3.51
2400 2523 9.846248 GCATGAACATAGAAATAAATCATACCC 57.154 33.333 0.00 0.00 0.00 3.69
2703 2826 5.078411 ACAAGTGACTAGTAGAATGGCAG 57.922 43.478 3.59 0.00 0.00 4.85
3332 3455 1.249407 GTCGTCTGTCTCAAGGACCT 58.751 55.000 0.00 0.00 43.89 3.85
3370 3493 3.499338 AGACACCATTGATTTTGGCTCA 58.501 40.909 0.00 0.00 37.81 4.26
3398 3521 2.220824 TCTTCAAATCTGTCAACACGCG 59.779 45.455 3.53 3.53 0.00 6.01
3500 3651 7.217258 GCTCTTACATCATTATCTCACGTATCG 59.783 40.741 0.00 0.00 0.00 2.92
3618 4076 4.157120 CAGGGGTAGCGAACGGGG 62.157 72.222 0.00 0.00 0.00 5.73
3625 4083 3.007635 CCTAAAGAAAACAGGGGTAGCG 58.992 50.000 0.00 0.00 0.00 4.26
3733 4192 4.883354 GGGCTTCTGGGGATGCGG 62.883 72.222 0.00 0.00 41.65 5.69
3737 4196 0.114364 AAAAACGGGCTTCTGGGGAT 59.886 50.000 0.00 0.00 0.00 3.85
4198 4827 1.315257 GGGTACTCCGCCTCGTACAA 61.315 60.000 0.00 0.00 38.14 2.41
4351 4980 1.453197 TCTACATGCCGAGGAGCGA 60.453 57.895 0.00 0.00 44.57 4.93
4352 4981 1.299468 GTCTACATGCCGAGGAGCG 60.299 63.158 0.00 0.00 40.47 5.03
4389 5799 4.587189 CTACGCCTAGCCGCCACC 62.587 72.222 0.00 0.00 0.00 4.61
4423 5833 4.630111 ACCAAAACACATGCAAACTATGG 58.370 39.130 0.00 0.00 0.00 2.74
4425 5835 7.622893 AAAAACCAAAACACATGCAAACTAT 57.377 28.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.