Multiple sequence alignment - TraesCS6D01G153900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G153900 chr6D 100.000 4541 0 0 1 4541 128106904 128102364 0.000000e+00 8386.0
1 TraesCS6D01G153900 chr6D 96.543 376 13 0 1 376 128247529 128247154 1.390000e-174 623.0
2 TraesCS6D01G153900 chr6A 95.846 3948 92 28 616 4540 150221993 150225891 0.000000e+00 6316.0
3 TraesCS6D01G153900 chr6A 97.092 619 18 0 1 619 150221334 150221952 0.000000e+00 1044.0
4 TraesCS6D01G153900 chr6A 100.000 31 0 0 3549 3579 150224868 150224898 1.760000e-04 58.4
5 TraesCS6D01G153900 chr6B 93.797 3434 143 34 802 4199 227073273 227069874 0.000000e+00 5097.0
6 TraesCS6D01G153900 chr7D 92.199 423 33 0 1 423 185787108 185786686 2.340000e-167 599.0
7 TraesCS6D01G153900 chr7D 92.944 411 28 1 1 410 481998952 481999362 8.410000e-167 597.0
8 TraesCS6D01G153900 chr7D 92.647 408 30 0 1 408 185796832 185796425 5.060000e-164 588.0
9 TraesCS6D01G153900 chr1D 93.137 408 28 0 1 408 278401227 278400820 2.340000e-167 599.0
10 TraesCS6D01G153900 chr1D 93.137 408 28 0 1 408 405902465 405902872 2.340000e-167 599.0
11 TraesCS6D01G153900 chr1D 92.892 408 26 1 1 408 405813831 405814235 1.410000e-164 590.0
12 TraesCS6D01G153900 chr3D 92.233 412 32 0 1 412 372339027 372338616 6.550000e-163 584.0
13 TraesCS6D01G153900 chr4A 82.258 124 19 3 4069 4189 700424201 700424324 2.230000e-18 104.0
14 TraesCS6D01G153900 chr7A 89.655 58 3 2 682 736 4779888 4779945 2.270000e-08 71.3
15 TraesCS6D01G153900 chr7A 88.333 60 4 2 682 738 3260627 3260568 8.150000e-08 69.4
16 TraesCS6D01G153900 chr5D 88.136 59 4 2 682 737 344525733 344525791 2.930000e-07 67.6
17 TraesCS6D01G153900 chr5D 88.136 59 4 3 682 737 547555077 547555135 2.930000e-07 67.6
18 TraesCS6D01G153900 chr3B 88.136 59 4 2 682 737 32373349 32373407 2.930000e-07 67.6
19 TraesCS6D01G153900 chr3B 86.667 60 5 2 682 738 19233711 19233652 3.790000e-06 63.9
20 TraesCS6D01G153900 chr2A 84.848 66 7 3 682 744 10634323 10634258 3.790000e-06 63.9
21 TraesCS6D01G153900 chr5B 85.484 62 3 4 683 740 408393457 408393398 4.910000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G153900 chr6D 128102364 128106904 4540 True 8386.0 8386 100.000 1 4541 1 chr6D.!!$R1 4540
1 TraesCS6D01G153900 chr6A 150221334 150225891 4557 False 2472.8 6316 97.646 1 4540 3 chr6A.!!$F1 4539
2 TraesCS6D01G153900 chr6B 227069874 227073273 3399 True 5097.0 5097 93.797 802 4199 1 chr6B.!!$R1 3397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 693 0.038310 TGCTCTCTCGGAGTTGGAGA 59.962 55.000 20.33 10.45 43.62 3.71 F
1099 1148 0.306840 CGGCGCTAGTGTTCGATCTA 59.693 55.000 7.64 0.00 0.00 1.98 F
2076 2145 1.348696 TGCTCCACTTTGCTGATCTCA 59.651 47.619 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2224 0.234106 CTGTTGTGAAGCTGTGCTCG 59.766 55.000 0.0 0.0 38.25 5.03 R
2481 2567 1.065126 GCTTCTCCAACCAGTGCCTAT 60.065 52.381 0.0 0.0 0.00 2.57 R
3595 3684 1.611673 CCACTCCACTCAACACCCATC 60.612 57.143 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.321653 GAGACAGGGGCACGATGTTT 60.322 55.000 0.00 0.00 0.00 2.83
73 74 5.709594 TGGAGGTAATACCCTACTTCCTAC 58.290 45.833 13.63 0.00 44.50 3.18
178 179 6.128445 GGTGATTGATTATGATTGCCTCTACG 60.128 42.308 0.00 0.00 0.00 3.51
242 243 3.876320 GGTTGTACAAGGTCGGTTTACAA 59.124 43.478 8.98 0.00 31.76 2.41
245 246 2.265589 ACAAGGTCGGTTTACAAGGG 57.734 50.000 0.00 0.00 0.00 3.95
255 256 4.347583 TCGGTTTACAAGGGAAGGAAACTA 59.652 41.667 0.00 0.00 42.68 2.24
314 315 3.849951 CCCATCCGGACACGAGGG 61.850 72.222 6.12 9.95 44.60 4.30
341 342 5.363979 TCTTCGATCTCATATCTTCACGG 57.636 43.478 0.00 0.00 0.00 4.94
352 353 1.191489 TCTTCACGGCCCATCAGTCA 61.191 55.000 0.00 0.00 0.00 3.41
394 395 2.367378 CCCGAGGACCCCCTAGTT 59.633 66.667 0.00 0.00 44.53 2.24
395 396 1.761271 CCCGAGGACCCCCTAGTTC 60.761 68.421 0.00 0.00 44.53 3.01
427 428 3.068064 GGGAACAACCGCCCATGG 61.068 66.667 4.14 4.14 44.07 3.66
539 540 2.511145 GCCTGCGAGCCTCTTCTG 60.511 66.667 0.00 0.00 0.00 3.02
567 568 7.328112 GTCGTTTTACTTCTGTAATAGATGCG 58.672 38.462 0.00 0.00 38.31 4.73
648 693 0.038310 TGCTCTCTCGGAGTTGGAGA 59.962 55.000 20.33 10.45 43.62 3.71
661 706 7.938715 TCGGAGTTGGAGAGTTTCTATAATAC 58.061 38.462 0.00 0.00 0.00 1.89
662 707 7.778853 TCGGAGTTGGAGAGTTTCTATAATACT 59.221 37.037 0.00 0.00 0.00 2.12
663 708 9.064706 CGGAGTTGGAGAGTTTCTATAATACTA 57.935 37.037 0.00 0.00 0.00 1.82
710 755 7.355778 GTTTCTTTCTATATGAAATGGAGCCG 58.644 38.462 0.00 0.00 42.96 5.52
1093 1142 1.152383 GGATTCCGGCGCTAGTGTTC 61.152 60.000 7.64 0.00 0.00 3.18
1098 1147 1.064296 CGGCGCTAGTGTTCGATCT 59.936 57.895 7.64 0.00 0.00 2.75
1099 1148 0.306840 CGGCGCTAGTGTTCGATCTA 59.693 55.000 7.64 0.00 0.00 1.98
1151 1204 4.635833 TGAACAGTAATGGCGTCGTATA 57.364 40.909 0.00 0.00 0.00 1.47
1177 1230 3.430862 TTTGATGTCGCTGCCCGC 61.431 61.111 0.00 0.00 36.73 6.13
1252 1305 2.034878 TCTCCATGCTAATCGCTCAGT 58.965 47.619 0.00 0.00 40.11 3.41
1261 1314 5.902681 TGCTAATCGCTCAGTTGTTAGTAT 58.097 37.500 0.00 0.00 40.11 2.12
1262 1315 6.338146 TGCTAATCGCTCAGTTGTTAGTATT 58.662 36.000 0.00 0.00 40.11 1.89
1263 1316 7.485810 TGCTAATCGCTCAGTTGTTAGTATTA 58.514 34.615 0.00 0.00 40.11 0.98
1339 1402 1.404391 AGTCCTATGACGTTACCTGCG 59.596 52.381 0.00 0.00 46.51 5.18
1350 1413 2.604462 CGTTACCTGCGTGTATAAACCC 59.396 50.000 0.00 0.00 0.00 4.11
1544 1610 2.128771 TATCCTTGCCCTGTTTCTGC 57.871 50.000 0.00 0.00 0.00 4.26
1648 1714 7.718334 ATATATGTCGATCCAGGAACATACA 57.282 36.000 12.82 8.86 0.00 2.29
2065 2134 5.039920 TGTTATGCTGATATGCTCCACTT 57.960 39.130 0.00 0.00 0.00 3.16
2066 2135 5.439721 TGTTATGCTGATATGCTCCACTTT 58.560 37.500 0.00 0.00 0.00 2.66
2067 2136 5.297527 TGTTATGCTGATATGCTCCACTTTG 59.702 40.000 0.00 0.00 0.00 2.77
2068 2137 2.019249 TGCTGATATGCTCCACTTTGC 58.981 47.619 0.00 0.00 0.00 3.68
2069 2138 2.295885 GCTGATATGCTCCACTTTGCT 58.704 47.619 0.00 0.00 0.00 3.91
2070 2139 2.033049 GCTGATATGCTCCACTTTGCTG 59.967 50.000 0.00 0.00 0.00 4.41
2071 2140 3.538591 CTGATATGCTCCACTTTGCTGA 58.461 45.455 0.00 0.00 0.00 4.26
2072 2141 4.135306 CTGATATGCTCCACTTTGCTGAT 58.865 43.478 0.00 0.00 0.00 2.90
2073 2142 4.132336 TGATATGCTCCACTTTGCTGATC 58.868 43.478 0.00 0.00 0.00 2.92
2074 2143 2.803030 ATGCTCCACTTTGCTGATCT 57.197 45.000 0.00 0.00 0.00 2.75
2075 2144 2.105006 TGCTCCACTTTGCTGATCTC 57.895 50.000 0.00 0.00 0.00 2.75
2076 2145 1.348696 TGCTCCACTTTGCTGATCTCA 59.651 47.619 0.00 0.00 0.00 3.27
2141 2224 3.492102 TCTGCAGATATTAGGGGTTGC 57.508 47.619 13.74 0.00 0.00 4.17
2332 2417 2.796031 CGAAAAATTTCAGCAGCTGCAA 59.204 40.909 38.24 25.00 45.16 4.08
2356 2441 9.790344 CAAAAGGTGATATCTATTCTTGGAGAT 57.210 33.333 3.98 0.00 36.40 2.75
2442 2527 3.807553 AGCAATTTGGTTTCCACCTTTG 58.192 40.909 0.00 0.00 44.61 2.77
2455 2540 5.105567 TCCACCTTTGAAGTTTCTGTGTA 57.894 39.130 0.00 0.00 0.00 2.90
2481 2567 8.884124 ATATTCTCAAATCTTTTCCCTTGTGA 57.116 30.769 0.00 0.00 0.00 3.58
2769 2855 7.546667 GTGATTGATGCTGGATTAAATGTTTGT 59.453 33.333 0.00 0.00 0.00 2.83
2776 2862 7.050377 TGCTGGATTAAATGTTTGTTCCAAAA 58.950 30.769 10.47 2.93 34.36 2.44
3092 3180 2.969443 ATGCGCAATTATCTTACCGC 57.031 45.000 17.11 0.00 41.55 5.68
3113 3201 2.622436 CTCCTTTCTTTGTAGGCGAGG 58.378 52.381 0.00 0.00 0.00 4.63
3154 3242 4.370364 TGCGAAATGGGCTAAAAAGATC 57.630 40.909 0.00 0.00 0.00 2.75
3245 3334 2.833794 TCCCTTGAAACACTTCACTCG 58.166 47.619 0.00 0.00 41.34 4.18
3290 3379 2.797156 GTCGCTATCACCTGCTTATGTG 59.203 50.000 0.00 0.00 0.00 3.21
3435 3524 7.795047 TGTCATCTATAATGTCCAAGTGTGAT 58.205 34.615 0.00 0.00 0.00 3.06
3528 3617 2.996734 ACCAAGGGGCGCAAATGG 60.997 61.111 10.83 14.27 37.90 3.16
3595 3684 0.606401 TGCAGGCCCTTCGAGAAAAG 60.606 55.000 0.00 0.00 0.00 2.27
3674 3766 3.620427 TTTATGAGTGGGCGTGTGTAT 57.380 42.857 0.00 0.00 0.00 2.29
3675 3767 4.739587 TTTATGAGTGGGCGTGTGTATA 57.260 40.909 0.00 0.00 0.00 1.47
3782 3882 1.555075 TGGCCAGGTGATAGTCTGTTC 59.445 52.381 0.00 0.00 0.00 3.18
3789 3889 5.171476 CAGGTGATAGTCTGTTCAATTCGT 58.829 41.667 0.00 0.00 0.00 3.85
3843 3943 1.133407 GGAGATGTGAGACGACAGGTC 59.867 57.143 0.00 0.00 46.45 3.85
4274 4375 4.679654 GTCGACGGAGCAAATTTTCATTTT 59.320 37.500 0.00 0.00 29.41 1.82
4394 4495 1.665735 CCGCAAACATTTACAGCGCTT 60.666 47.619 7.50 1.63 46.33 4.68
4396 4497 1.985684 GCAAACATTTACAGCGCTTCC 59.014 47.619 7.50 0.00 0.00 3.46
4401 4502 2.226437 ACATTTACAGCGCTTCCAACAG 59.774 45.455 7.50 0.00 0.00 3.16
4411 4512 1.336240 GCTTCCAACAGCCATTGACAC 60.336 52.381 0.00 0.00 33.21 3.67
4436 4537 1.183030 ATGGAGGACGTCGTGGACAA 61.183 55.000 16.63 0.00 32.09 3.18
4459 4560 8.116026 ACAACCTAGGATTAAGTTTTGGATGAT 58.884 33.333 17.98 0.00 0.00 2.45
4469 4570 2.677836 GTTTTGGATGATGCGCTAGACA 59.322 45.455 9.73 3.82 0.00 3.41
4475 4576 3.623060 GGATGATGCGCTAGACAAAGAAA 59.377 43.478 9.73 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 7.443575 CCCCTATACTCATCAAAGTCAATCAAG 59.556 40.741 0.00 0.00 0.00 3.02
127 128 8.140112 CTAGACATCTAGGGTTTAGCCATTAT 57.860 38.462 7.90 0.00 41.65 1.28
242 243 3.810623 TGGGTGTATAGTTTCCTTCCCT 58.189 45.455 0.00 0.00 35.20 4.20
245 246 4.999311 ACGTTTGGGTGTATAGTTTCCTTC 59.001 41.667 0.00 0.00 0.00 3.46
255 256 2.552315 CAAGCTTGACGTTTGGGTGTAT 59.448 45.455 22.31 0.00 31.03 2.29
314 315 7.481483 CGTGAAGATATGAGATCGAAGATCTTC 59.519 40.741 25.52 25.52 44.85 2.87
341 342 3.731728 TGGGCCTGACTGATGGGC 61.732 66.667 4.53 0.00 46.59 5.36
352 353 0.839946 GGACTATGTGATGTGGGCCT 59.160 55.000 4.53 0.00 0.00 5.19
427 428 2.879103 TTCAATGGTGGTTCTCCCTC 57.121 50.000 0.00 0.00 0.00 4.30
482 483 0.474184 ACCCTGAGAACACCACTTGG 59.526 55.000 0.00 0.00 42.17 3.61
539 540 9.021863 CATCTATTACAGAAGTAAAACGACCTC 57.978 37.037 0.00 0.00 43.01 3.85
552 553 4.022242 GCCTAGTCCGCATCTATTACAGAA 60.022 45.833 0.00 0.00 36.67 3.02
661 706 3.255149 ACACGACTGGAGTACCAAGTTAG 59.745 47.826 0.00 0.00 46.32 2.34
662 707 3.005050 CACACGACTGGAGTACCAAGTTA 59.995 47.826 0.00 0.00 46.32 2.24
663 708 2.037144 ACACGACTGGAGTACCAAGTT 58.963 47.619 0.00 0.00 46.32 2.66
710 755 2.319025 TCAATGAAAAGGGGTTCCCC 57.681 50.000 18.61 18.61 46.99 4.81
737 782 5.047235 GTGAGCGGGGAGATAATAGTATGTT 60.047 44.000 0.00 0.00 0.00 2.71
739 784 4.142138 GGTGAGCGGGGAGATAATAGTATG 60.142 50.000 0.00 0.00 0.00 2.39
743 789 1.550976 GGGTGAGCGGGGAGATAATAG 59.449 57.143 0.00 0.00 0.00 1.73
893 939 2.231380 GGGGGAAGTGGAGCAGGAA 61.231 63.158 0.00 0.00 0.00 3.36
1089 1138 3.186909 CGTGCAGGATTTAGATCGAACA 58.813 45.455 0.00 0.00 32.84 3.18
1093 1142 2.509052 TCCGTGCAGGATTTAGATCG 57.491 50.000 8.24 0.00 45.98 3.69
1151 1204 3.666902 GCAGCGACATCAAACAAACGTAT 60.667 43.478 0.00 0.00 0.00 3.06
1191 1244 2.100605 GGGAGCACCTGACTTAACAG 57.899 55.000 0.00 0.00 37.61 3.16
1276 1329 3.427909 CCTGTGTGCGCATGTTTAATCAT 60.428 43.478 15.91 0.00 0.00 2.45
1339 1402 2.368655 ACGTGTCCGGGTTTATACAC 57.631 50.000 10.91 10.91 39.04 2.90
1350 1413 0.822164 AGGGGAAAGATACGTGTCCG 59.178 55.000 8.86 0.00 40.83 4.79
1357 1420 3.118261 TCATGACAGCAGGGGAAAGATAC 60.118 47.826 0.00 0.00 0.00 2.24
1388 1451 5.031066 TCACTAGGCTACTGTTTTGTGTT 57.969 39.130 7.44 0.00 0.00 3.32
1544 1610 0.447801 GCCACATAACTGCTTGACCG 59.552 55.000 0.00 0.00 0.00 4.79
1648 1714 8.257306 ACAATTGACACCTTTAACTGAACAATT 58.743 29.630 13.59 0.00 36.38 2.32
2065 2134 6.322201 TGTCTGTCATACTATGAGATCAGCAA 59.678 38.462 0.00 0.00 40.53 3.91
2066 2135 5.829924 TGTCTGTCATACTATGAGATCAGCA 59.170 40.000 0.00 4.43 40.53 4.41
2067 2136 6.324561 TGTCTGTCATACTATGAGATCAGC 57.675 41.667 0.00 2.41 40.53 4.26
2068 2137 8.339344 AGATGTCTGTCATACTATGAGATCAG 57.661 38.462 0.00 4.37 40.53 2.90
2069 2138 7.941238 TGAGATGTCTGTCATACTATGAGATCA 59.059 37.037 0.00 2.39 40.53 2.92
2070 2139 8.334263 TGAGATGTCTGTCATACTATGAGATC 57.666 38.462 0.00 0.00 40.53 2.75
2071 2140 8.882557 ATGAGATGTCTGTCATACTATGAGAT 57.117 34.615 0.00 0.00 40.53 2.75
2072 2141 8.703378 AATGAGATGTCTGTCATACTATGAGA 57.297 34.615 0.00 0.00 40.53 3.27
2141 2224 0.234106 CTGTTGTGAAGCTGTGCTCG 59.766 55.000 0.00 0.00 38.25 5.03
2332 2417 9.163894 TGATCTCCAAGAATAGATATCACCTTT 57.836 33.333 5.32 0.00 32.60 3.11
2356 2441 2.978156 ACAATGCCCTTTTCTCCTGA 57.022 45.000 0.00 0.00 0.00 3.86
2455 2540 9.312904 TCACAAGGGAAAAGATTTGAGAATATT 57.687 29.630 0.00 0.00 0.00 1.28
2463 2548 5.185635 TGCCTATCACAAGGGAAAAGATTTG 59.814 40.000 0.00 0.00 33.48 2.32
2464 2549 5.185828 GTGCCTATCACAAGGGAAAAGATTT 59.814 40.000 0.00 0.00 44.98 2.17
2481 2567 1.065126 GCTTCTCCAACCAGTGCCTAT 60.065 52.381 0.00 0.00 0.00 2.57
2674 2760 4.659529 TTTCTCAGAGTCTGACCCTCTA 57.340 45.455 19.10 0.00 37.18 2.43
2769 2855 5.592282 TCAGTTGCAGTATCAAGTTTTGGAA 59.408 36.000 0.00 0.00 0.00 3.53
2776 2862 5.008019 CAGTTGTTCAGTTGCAGTATCAAGT 59.992 40.000 0.00 0.00 0.00 3.16
2819 2907 3.888930 CACAAAAAGGCAGAGGGTTAGAA 59.111 43.478 0.00 0.00 0.00 2.10
2820 2908 3.486383 CACAAAAAGGCAGAGGGTTAGA 58.514 45.455 0.00 0.00 0.00 2.10
2848 2936 4.395231 TCTGAGCAAATCATTGAGCAGAAG 59.605 41.667 9.71 0.00 41.29 2.85
2857 2945 3.430374 GCTTGGCATCTGAGCAAATCATT 60.430 43.478 4.08 0.00 37.28 2.57
2997 3085 4.737855 AGCACCTCGTTGTAGATTGTAT 57.262 40.909 0.00 0.00 0.00 2.29
3092 3180 2.622436 CTCGCCTACAAAGAAAGGAGG 58.378 52.381 0.00 0.00 34.58 4.30
3113 3201 3.058224 GCATACACTTTGGTGGACTTCAC 60.058 47.826 1.29 0.00 46.85 3.18
3154 3242 3.099905 TGTGGGTGGTTCTATCTCAGAG 58.900 50.000 0.00 0.00 33.83 3.35
3290 3379 3.002759 GGAGACAAAACAGTGCAGACTTC 59.997 47.826 0.00 0.00 0.00 3.01
3435 3524 2.594303 CTGCCCGCCTTGTTGTCA 60.594 61.111 0.00 0.00 0.00 3.58
3528 3617 4.216731 CGCATGCATGTCAAGATTCATAC 58.783 43.478 26.79 5.40 0.00 2.39
3595 3684 1.611673 CCACTCCACTCAACACCCATC 60.612 57.143 0.00 0.00 0.00 3.51
3639 3729 6.071463 CACTCATAAAACAAAGCGACACTAC 58.929 40.000 0.00 0.00 0.00 2.73
3674 3766 5.238432 CACCACACTTGCATTCAGTTACTTA 59.762 40.000 0.00 0.00 0.00 2.24
3675 3767 4.036734 CACCACACTTGCATTCAGTTACTT 59.963 41.667 0.00 0.00 0.00 2.24
3782 3882 4.221342 CCACTTTGATCACACACGAATTG 58.779 43.478 0.00 0.00 0.00 2.32
3889 3989 7.916914 AGTACCAGCTTGATTAAAAATACGT 57.083 32.000 0.00 0.00 0.00 3.57
4252 4353 4.497473 AAATGAAAATTTGCTCCGTCGA 57.503 36.364 0.00 0.00 0.00 4.20
4253 4354 6.683090 TTAAAATGAAAATTTGCTCCGTCG 57.317 33.333 0.00 0.00 0.00 5.12
4274 4375 8.750298 CCTCTGTAAAACTCCTCTCACTTATTA 58.250 37.037 0.00 0.00 0.00 0.98
4315 4416 1.283793 GCGCTGCAGATGTTGTTGT 59.716 52.632 20.43 0.00 0.00 3.32
4316 4417 1.443194 GGCGCTGCAGATGTTGTTG 60.443 57.895 20.43 0.00 0.00 3.33
4317 4418 2.956987 GGCGCTGCAGATGTTGTT 59.043 55.556 20.43 0.00 0.00 2.83
4394 4495 0.888736 CCGTGTCAATGGCTGTTGGA 60.889 55.000 3.94 0.00 0.00 3.53
4396 4497 0.238289 GTCCGTGTCAATGGCTGTTG 59.762 55.000 0.00 0.00 31.82 3.33
4401 4502 1.656818 CCATGGTCCGTGTCAATGGC 61.657 60.000 10.28 0.00 31.82 4.40
4411 4512 2.494918 GACGTCCTCCATGGTCCG 59.505 66.667 12.58 11.93 37.31 4.79
4436 4537 6.547510 GCATCATCCAAAACTTAATCCTAGGT 59.452 38.462 9.08 0.00 0.00 3.08
4459 4560 2.206750 ACGTTTTCTTTGTCTAGCGCA 58.793 42.857 11.47 0.00 0.00 6.09
4475 4576 8.792633 TCATCCTTTAATTCTGAATTGAACGTT 58.207 29.630 22.47 0.00 32.38 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.