Multiple sequence alignment - TraesCS6D01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G153300 chr6D 100.000 6247 0 0 1 6247 127198256 127204502 0.000000e+00 11537.0
1 TraesCS6D01G153300 chr6D 77.093 227 38 12 6021 6240 418886385 418886166 1.100000e-22 119.0
2 TraesCS6D01G153300 chr6A 93.266 4752 220 56 963 5690 151463598 151458923 0.000000e+00 6911.0
3 TraesCS6D01G153300 chr6A 94.613 594 25 2 4 591 186482869 186482277 0.000000e+00 913.0
4 TraesCS6D01G153300 chr6A 94.118 595 28 3 4 592 552829440 552828847 0.000000e+00 898.0
5 TraesCS6D01G153300 chr6A 94.203 414 16 3 5835 6247 151458673 151458267 5.320000e-175 625.0
6 TraesCS6D01G153300 chr6A 81.352 799 93 34 1198 1973 10046144 10045379 3.220000e-167 599.0
7 TraesCS6D01G153300 chr6A 90.909 154 12 2 2403 2554 118284357 118284204 8.210000e-49 206.0
8 TraesCS6D01G153300 chr6A 97.826 92 2 0 5689 5780 151458775 151458684 6.480000e-35 159.0
9 TraesCS6D01G153300 chr6A 81.437 167 25 5 6022 6185 552751322 552751485 1.410000e-26 132.0
10 TraesCS6D01G153300 chr6A 93.023 43 3 0 4382 4424 151460170 151460128 5.230000e-06 63.9
11 TraesCS6D01G153300 chr6B 93.718 2149 107 17 3311 5437 226367555 226369697 0.000000e+00 3195.0
12 TraesCS6D01G153300 chr6B 93.691 1696 72 17 949 2635 226365027 226366696 0.000000e+00 2507.0
13 TraesCS6D01G153300 chr6B 93.012 601 29 5 4 592 278607506 278606907 0.000000e+00 865.0
14 TraesCS6D01G153300 chr6B 93.089 463 19 6 2827 3276 226367091 226367553 0.000000e+00 665.0
15 TraesCS6D01G153300 chr6B 89.895 287 18 9 5693 5975 226369931 226370210 5.950000e-95 359.0
16 TraesCS6D01G153300 chr6B 87.665 227 26 2 6021 6247 624691828 624692052 4.800000e-66 263.0
17 TraesCS6D01G153300 chr6B 79.909 219 42 2 6026 6242 453115284 453115066 6.480000e-35 159.0
18 TraesCS6D01G153300 chr6B 89.130 92 6 2 840 927 226364953 226365044 1.840000e-20 111.0
19 TraesCS6D01G153300 chr6B 93.182 44 3 0 4383 4426 226368681 226368724 1.450000e-06 65.8
20 TraesCS6D01G153300 chr5A 93.960 596 29 3 7 596 662563630 662563036 0.000000e+00 894.0
21 TraesCS6D01G153300 chr5A 84.000 100 11 3 5504 5602 140595718 140595623 2.400000e-14 91.6
22 TraesCS6D01G153300 chr7A 92.321 599 39 3 1 593 478381029 478381626 0.000000e+00 845.0
23 TraesCS6D01G153300 chr7A 90.244 451 40 1 148 594 735179293 735178843 2.510000e-163 586.0
24 TraesCS6D01G153300 chr7A 83.436 163 21 5 6026 6185 39236814 39236655 5.050000e-31 147.0
25 TraesCS6D01G153300 chrUn 90.532 602 47 4 1 592 18075778 18075177 0.000000e+00 787.0
26 TraesCS6D01G153300 chr7B 86.600 597 63 8 5 597 708504819 708505402 1.470000e-180 643.0
27 TraesCS6D01G153300 chr7B 92.018 451 31 2 148 594 744555175 744555624 4.110000e-176 628.0
28 TraesCS6D01G153300 chr4D 84.571 525 70 6 1501 2019 483982836 483982317 1.550000e-140 510.0
29 TraesCS6D01G153300 chr4D 82.510 526 78 9 1501 2019 483979369 483978851 3.430000e-122 449.0
30 TraesCS6D01G153300 chr4D 92.256 297 21 1 1928 2222 483975371 483975075 2.690000e-113 420.0
31 TraesCS6D01G153300 chr4D 91.582 297 20 3 1928 2222 483982318 483982025 7.540000e-109 405.0
32 TraesCS6D01G153300 chr4D 90.909 297 22 2 1928 2222 483978852 483978559 1.630000e-105 394.0
33 TraesCS6D01G153300 chr4D 89.641 251 24 1 1769 2019 483975618 483975370 1.010000e-82 318.0
34 TraesCS6D01G153300 chr4D 77.434 226 42 8 6026 6246 35599809 35599588 6.570000e-25 126.0
35 TraesCS6D01G153300 chr4D 93.939 66 4 0 5539 5604 16653085 16653150 3.980000e-17 100.0
36 TraesCS6D01G153300 chr7D 84.160 524 68 9 1501 2016 620588726 620589242 1.560000e-135 494.0
37 TraesCS6D01G153300 chr7D 92.256 297 21 1 1928 2222 620589244 620589540 2.690000e-113 420.0
38 TraesCS6D01G153300 chr7D 90.385 156 12 3 2401 2554 442281317 442281471 1.060000e-47 202.0
39 TraesCS6D01G153300 chr2D 84.100 522 72 7 1501 2016 166793425 166793941 1.560000e-135 494.0
40 TraesCS6D01G153300 chr2D 91.582 297 23 1 1928 2222 166793943 166794239 5.830000e-110 409.0
41 TraesCS6D01G153300 chr4A 83.491 527 72 9 1501 2019 343904524 343904005 1.580000e-130 477.0
42 TraesCS6D01G153300 chr4A 92.617 298 19 2 1928 2222 343904006 343903709 5.790000e-115 425.0
43 TraesCS6D01G153300 chr4A 89.686 223 21 2 6026 6247 1734004 1733783 3.690000e-72 283.0
44 TraesCS6D01G153300 chr1D 83.333 522 76 7 1501 2016 267604878 267605394 7.330000e-129 472.0
45 TraesCS6D01G153300 chr1D 92.593 297 20 1 1928 2222 267605396 267605692 5.790000e-115 425.0
46 TraesCS6D01G153300 chr1D 90.260 154 12 3 2401 2551 351254706 351254859 1.370000e-46 198.0
47 TraesCS6D01G153300 chr1D 81.013 158 18 7 5448 5603 103408721 103408868 1.420000e-21 115.0
48 TraesCS6D01G153300 chr1D 77.987 159 26 5 5448 5604 481101880 481101729 2.400000e-14 91.6
49 TraesCS6D01G153300 chr1D 84.270 89 8 4 812 899 91230519 91230602 1.440000e-11 82.4
50 TraesCS6D01G153300 chr1B 83.554 377 40 13 1198 1562 61126352 61125986 3.610000e-87 333.0
51 TraesCS6D01G153300 chr1B 81.180 356 47 15 1540 1884 61125951 61125605 1.030000e-67 268.0
52 TraesCS6D01G153300 chr5B 89.238 223 22 2 6022 6244 138348697 138348917 1.720000e-70 278.0
53 TraesCS6D01G153300 chr5B 93.939 66 4 0 5539 5604 352378691 352378756 3.980000e-17 100.0
54 TraesCS6D01G153300 chr5B 80.392 102 17 2 5503 5604 682027874 682027776 2.420000e-09 75.0
55 TraesCS6D01G153300 chr5B 82.353 85 12 2 5503 5587 682050479 682050398 3.120000e-08 71.3
56 TraesCS6D01G153300 chr2B 90.058 171 12 5 2400 2567 224651982 224652150 3.790000e-52 217.0
57 TraesCS6D01G153300 chr4B 92.667 150 9 2 2404 2551 146469216 146469365 1.360000e-51 215.0
58 TraesCS6D01G153300 chr4B 80.380 158 23 6 5448 5604 360233649 360233799 5.120000e-21 113.0
59 TraesCS6D01G153300 chr4B 77.987 159 31 4 5448 5604 28618462 28618618 5.150000e-16 97.1
60 TraesCS6D01G153300 chr3B 89.506 162 10 3 2401 2555 158707659 158707498 1.370000e-46 198.0
61 TraesCS6D01G153300 chr2A 90.604 149 12 2 2405 2551 549290275 549290423 4.940000e-46 196.0
62 TraesCS6D01G153300 chr3D 95.000 40 2 0 5448 5487 597397370 597397409 5.230000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G153300 chr6D 127198256 127204502 6246 False 11537.000000 11537 100.000000 1 6247 1 chr6D.!!$F1 6246
1 TraesCS6D01G153300 chr6A 151458267 151463598 5331 True 1939.725000 6911 94.579500 963 6247 4 chr6A.!!$R5 5284
2 TraesCS6D01G153300 chr6A 186482277 186482869 592 True 913.000000 913 94.613000 4 591 1 chr6A.!!$R3 587
3 TraesCS6D01G153300 chr6A 552828847 552829440 593 True 898.000000 898 94.118000 4 592 1 chr6A.!!$R4 588
4 TraesCS6D01G153300 chr6A 10045379 10046144 765 True 599.000000 599 81.352000 1198 1973 1 chr6A.!!$R1 775
5 TraesCS6D01G153300 chr6B 226364953 226370210 5257 False 1150.466667 3195 92.117500 840 5975 6 chr6B.!!$F2 5135
6 TraesCS6D01G153300 chr6B 278606907 278607506 599 True 865.000000 865 93.012000 4 592 1 chr6B.!!$R1 588
7 TraesCS6D01G153300 chr5A 662563036 662563630 594 True 894.000000 894 93.960000 7 596 1 chr5A.!!$R2 589
8 TraesCS6D01G153300 chr7A 478381029 478381626 597 False 845.000000 845 92.321000 1 593 1 chr7A.!!$F1 592
9 TraesCS6D01G153300 chrUn 18075177 18075778 601 True 787.000000 787 90.532000 1 592 1 chrUn.!!$R1 591
10 TraesCS6D01G153300 chr7B 708504819 708505402 583 False 643.000000 643 86.600000 5 597 1 chr7B.!!$F1 592
11 TraesCS6D01G153300 chr4D 483975075 483982836 7761 True 416.000000 510 88.578167 1501 2222 6 chr4D.!!$R2 721
12 TraesCS6D01G153300 chr7D 620588726 620589540 814 False 457.000000 494 88.208000 1501 2222 2 chr7D.!!$F2 721
13 TraesCS6D01G153300 chr2D 166793425 166794239 814 False 451.500000 494 87.841000 1501 2222 2 chr2D.!!$F1 721
14 TraesCS6D01G153300 chr4A 343903709 343904524 815 True 451.000000 477 88.054000 1501 2222 2 chr4A.!!$R2 721
15 TraesCS6D01G153300 chr1D 267604878 267605692 814 False 448.500000 472 87.963000 1501 2222 2 chr1D.!!$F4 721
16 TraesCS6D01G153300 chr1B 61125605 61126352 747 True 300.500000 333 82.367000 1198 1884 2 chr1B.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 674 0.031817 ATTGCTAAATGGGCCAGCCT 60.032 50.0 13.78 0.63 34.31 4.58 F
654 678 0.034186 CTAAATGGGCCAGCCTGACA 60.034 55.0 13.78 0.00 36.10 3.58 F
934 959 0.179020 CGATGCCCTGGGATTTGCTA 60.179 55.0 19.27 0.00 0.00 3.49 F
2368 9518 0.737219 GGCACCAGCAGCATTAAGAG 59.263 55.0 0.00 0.00 44.61 2.85 F
2731 10016 0.107945 GACCAGCGCTTCCTCAGATT 60.108 55.0 7.50 0.00 0.00 2.40 F
3492 10866 1.043816 ATCTGCTATCCCCGTCACTG 58.956 55.0 0.00 0.00 0.00 3.66 F
3815 11192 0.538057 TTCCCAAGCTGCTGGTTCAG 60.538 55.0 1.35 0.49 34.33 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 9451 1.824230 AGCCGCCATTATTTTGCTTGA 59.176 42.857 0.00 0.00 0.00 3.02 R
2590 9743 2.351738 GCTCGGTTTTCCTGTTCATTGG 60.352 50.000 0.00 0.00 37.95 3.16 R
2692 9977 0.698238 TTGGCCAGTAGCATTCACCT 59.302 50.000 5.11 0.00 46.50 4.00 R
3476 10850 0.032912 TACCAGTGACGGGGATAGCA 60.033 55.000 6.73 0.00 0.00 3.49 R
3721 11097 1.072173 TCCAACACCATGACTCCACAG 59.928 52.381 0.00 0.00 0.00 3.66 R
5008 12402 1.134965 GCACGGAGCTACTGATCAGTT 60.135 52.381 32.14 15.84 42.54 3.16 R
5787 13337 1.227556 GGACGTGTGCAAGGACAGT 60.228 57.895 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 321 3.535962 GGCAGCGAGGAGAGAGGG 61.536 72.222 0.00 0.00 0.00 4.30
429 453 3.414700 CCACGACGCTTGGCAGAC 61.415 66.667 0.00 0.00 0.00 3.51
491 515 0.464036 TGATGTAGACGGTGGGATGC 59.536 55.000 0.00 0.00 0.00 3.91
527 551 4.693283 TGATCTAAGGGTTGTGCTTATCG 58.307 43.478 0.00 0.00 0.00 2.92
571 595 6.103330 GGGTTTAGAAAAACTCAAGTTTGCA 58.897 36.000 8.80 0.00 46.47 4.08
605 629 8.251383 AGTAGTATAGATATTGTGTTGTGCCT 57.749 34.615 0.00 0.00 0.00 4.75
606 630 8.705594 AGTAGTATAGATATTGTGTTGTGCCTT 58.294 33.333 0.00 0.00 0.00 4.35
607 631 8.979574 GTAGTATAGATATTGTGTTGTGCCTTC 58.020 37.037 0.00 0.00 0.00 3.46
608 632 6.992715 AGTATAGATATTGTGTTGTGCCTTCC 59.007 38.462 0.00 0.00 0.00 3.46
609 633 4.307032 AGATATTGTGTTGTGCCTTCCT 57.693 40.909 0.00 0.00 0.00 3.36
610 634 4.666512 AGATATTGTGTTGTGCCTTCCTT 58.333 39.130 0.00 0.00 0.00 3.36
611 635 4.702131 AGATATTGTGTTGTGCCTTCCTTC 59.298 41.667 0.00 0.00 0.00 3.46
612 636 1.398692 TTGTGTTGTGCCTTCCTTCC 58.601 50.000 0.00 0.00 0.00 3.46
613 637 0.257328 TGTGTTGTGCCTTCCTTCCA 59.743 50.000 0.00 0.00 0.00 3.53
614 638 0.954452 GTGTTGTGCCTTCCTTCCAG 59.046 55.000 0.00 0.00 0.00 3.86
615 639 0.178992 TGTTGTGCCTTCCTTCCAGG 60.179 55.000 0.00 0.00 36.46 4.45
620 644 2.679716 CCTTCCTTCCAGGCCCAG 59.320 66.667 0.00 0.00 34.61 4.45
621 645 2.679716 CTTCCTTCCAGGCCCAGG 59.320 66.667 0.00 1.14 34.61 4.45
622 646 3.651980 CTTCCTTCCAGGCCCAGGC 62.652 68.421 0.00 0.00 34.61 4.85
624 648 3.747579 CCTTCCAGGCCCAGGCAT 61.748 66.667 11.50 0.00 44.11 4.40
630 654 3.259314 AGGCCCAGGCATGACACA 61.259 61.111 11.50 0.00 44.11 3.72
631 655 2.283101 GGCCCAGGCATGACACAA 60.283 61.111 11.50 0.00 44.11 3.33
632 656 1.683365 GGCCCAGGCATGACACAAT 60.683 57.895 11.50 0.00 44.11 2.71
633 657 1.259840 GGCCCAGGCATGACACAATT 61.260 55.000 11.50 0.00 44.11 2.32
634 658 0.108520 GCCCAGGCATGACACAATTG 60.109 55.000 0.00 3.24 41.49 2.32
635 659 0.108520 CCCAGGCATGACACAATTGC 60.109 55.000 5.05 0.00 35.64 3.56
636 660 0.892755 CCAGGCATGACACAATTGCT 59.107 50.000 5.05 0.00 36.62 3.91
637 661 2.093890 CCAGGCATGACACAATTGCTA 58.906 47.619 5.05 0.00 36.62 3.49
638 662 2.492881 CCAGGCATGACACAATTGCTAA 59.507 45.455 5.05 0.00 36.62 3.09
639 663 3.056678 CCAGGCATGACACAATTGCTAAA 60.057 43.478 5.05 0.00 36.62 1.85
640 664 4.382254 CCAGGCATGACACAATTGCTAAAT 60.382 41.667 5.05 0.00 36.62 1.40
641 665 4.565166 CAGGCATGACACAATTGCTAAATG 59.435 41.667 5.05 6.40 36.62 2.32
642 666 3.866910 GGCATGACACAATTGCTAAATGG 59.133 43.478 5.05 0.00 36.62 3.16
643 667 3.866910 GCATGACACAATTGCTAAATGGG 59.133 43.478 5.05 0.00 33.61 4.00
644 668 3.591196 TGACACAATTGCTAAATGGGC 57.409 42.857 5.05 0.00 0.00 5.36
645 669 2.233431 TGACACAATTGCTAAATGGGCC 59.767 45.455 5.05 0.00 0.00 5.80
646 670 2.233431 GACACAATTGCTAAATGGGCCA 59.767 45.455 9.61 9.61 0.00 5.36
647 671 2.234414 ACACAATTGCTAAATGGGCCAG 59.766 45.455 13.78 0.00 0.00 4.85
648 672 1.207811 ACAATTGCTAAATGGGCCAGC 59.792 47.619 13.78 10.76 35.82 4.85
649 673 0.832626 AATTGCTAAATGGGCCAGCC 59.167 50.000 13.78 0.00 34.31 4.85
650 674 0.031817 ATTGCTAAATGGGCCAGCCT 60.032 50.000 13.78 0.63 34.31 4.58
651 675 0.971959 TTGCTAAATGGGCCAGCCTG 60.972 55.000 13.78 3.60 34.31 4.85
652 676 1.076777 GCTAAATGGGCCAGCCTGA 60.077 57.895 13.78 0.00 36.10 3.86
653 677 1.387295 GCTAAATGGGCCAGCCTGAC 61.387 60.000 13.78 0.00 36.10 3.51
654 678 0.034186 CTAAATGGGCCAGCCTGACA 60.034 55.000 13.78 0.00 36.10 3.58
655 679 0.323360 TAAATGGGCCAGCCTGACAC 60.323 55.000 13.78 0.00 36.10 3.67
656 680 3.925630 AATGGGCCAGCCTGACACG 62.926 63.158 13.78 0.00 36.10 4.49
659 683 4.314440 GGCCAGCCTGACACGACA 62.314 66.667 0.00 0.00 0.00 4.35
660 684 3.044305 GCCAGCCTGACACGACAC 61.044 66.667 0.00 0.00 0.00 3.67
661 685 2.734723 CCAGCCTGACACGACACG 60.735 66.667 0.00 0.00 0.00 4.49
662 686 2.027605 CAGCCTGACACGACACGT 59.972 61.111 0.00 0.00 42.36 4.49
671 695 4.936823 ACGACACGTGTGCCGGTC 62.937 66.667 28.82 9.48 40.76 4.79
687 711 4.884257 TCGGCCCGCGTGCTATTC 62.884 66.667 14.46 0.00 0.00 1.75
688 712 4.891727 CGGCCCGCGTGCTATTCT 62.892 66.667 14.46 0.00 0.00 2.40
689 713 3.272334 GGCCCGCGTGCTATTCTG 61.272 66.667 14.46 0.00 0.00 3.02
690 714 3.941836 GCCCGCGTGCTATTCTGC 61.942 66.667 6.24 0.00 0.00 4.26
691 715 3.272334 CCCGCGTGCTATTCTGCC 61.272 66.667 4.92 0.00 0.00 4.85
692 716 2.202932 CCGCGTGCTATTCTGCCT 60.203 61.111 4.92 0.00 0.00 4.75
693 717 1.815421 CCGCGTGCTATTCTGCCTT 60.815 57.895 4.92 0.00 0.00 4.35
694 718 1.369091 CCGCGTGCTATTCTGCCTTT 61.369 55.000 4.92 0.00 0.00 3.11
695 719 0.447801 CGCGTGCTATTCTGCCTTTT 59.552 50.000 0.00 0.00 0.00 2.27
696 720 1.791555 CGCGTGCTATTCTGCCTTTTG 60.792 52.381 0.00 0.00 0.00 2.44
697 721 1.468054 GCGTGCTATTCTGCCTTTTGG 60.468 52.381 0.00 0.00 44.18 3.28
698 722 1.133025 CGTGCTATTCTGCCTTTTGGG 59.867 52.381 0.00 0.00 40.82 4.12
699 723 2.171003 GTGCTATTCTGCCTTTTGGGT 58.829 47.619 0.00 0.00 40.82 4.51
700 724 2.562738 GTGCTATTCTGCCTTTTGGGTT 59.437 45.455 0.00 0.00 40.82 4.11
701 725 2.562298 TGCTATTCTGCCTTTTGGGTTG 59.438 45.455 0.00 0.00 40.82 3.77
702 726 2.562738 GCTATTCTGCCTTTTGGGTTGT 59.437 45.455 0.00 0.00 40.82 3.32
703 727 3.006859 GCTATTCTGCCTTTTGGGTTGTT 59.993 43.478 0.00 0.00 40.82 2.83
704 728 4.503123 GCTATTCTGCCTTTTGGGTTGTTT 60.503 41.667 0.00 0.00 40.82 2.83
705 729 3.990959 TTCTGCCTTTTGGGTTGTTTT 57.009 38.095 0.00 0.00 40.82 2.43
706 730 3.258971 TCTGCCTTTTGGGTTGTTTTG 57.741 42.857 0.00 0.00 40.82 2.44
707 731 2.569404 TCTGCCTTTTGGGTTGTTTTGT 59.431 40.909 0.00 0.00 40.82 2.83
708 732 2.677337 CTGCCTTTTGGGTTGTTTTGTG 59.323 45.455 0.00 0.00 40.82 3.33
709 733 1.400142 GCCTTTTGGGTTGTTTTGTGC 59.600 47.619 0.00 0.00 40.82 4.57
710 734 2.013400 CCTTTTGGGTTGTTTTGTGCC 58.987 47.619 0.00 0.00 35.46 5.01
711 735 2.355615 CCTTTTGGGTTGTTTTGTGCCT 60.356 45.455 0.00 0.00 35.46 4.75
712 736 3.118592 CCTTTTGGGTTGTTTTGTGCCTA 60.119 43.478 0.00 0.00 35.46 3.93
713 737 4.444164 CCTTTTGGGTTGTTTTGTGCCTAT 60.444 41.667 0.00 0.00 35.46 2.57
714 738 4.762289 TTTGGGTTGTTTTGTGCCTATT 57.238 36.364 0.00 0.00 0.00 1.73
715 739 4.762289 TTGGGTTGTTTTGTGCCTATTT 57.238 36.364 0.00 0.00 0.00 1.40
716 740 4.762289 TGGGTTGTTTTGTGCCTATTTT 57.238 36.364 0.00 0.00 0.00 1.82
717 741 5.104259 TGGGTTGTTTTGTGCCTATTTTT 57.896 34.783 0.00 0.00 0.00 1.94
718 742 4.878397 TGGGTTGTTTTGTGCCTATTTTTG 59.122 37.500 0.00 0.00 0.00 2.44
719 743 4.274705 GGGTTGTTTTGTGCCTATTTTTGG 59.725 41.667 0.00 0.00 0.00 3.28
731 755 5.625921 CCTATTTTTGGCATTTTGGGTTG 57.374 39.130 0.00 0.00 0.00 3.77
732 756 5.069318 CCTATTTTTGGCATTTTGGGTTGT 58.931 37.500 0.00 0.00 0.00 3.32
733 757 5.534278 CCTATTTTTGGCATTTTGGGTTGTT 59.466 36.000 0.00 0.00 0.00 2.83
734 758 4.972514 TTTTTGGCATTTTGGGTTGTTC 57.027 36.364 0.00 0.00 0.00 3.18
735 759 3.634397 TTTGGCATTTTGGGTTGTTCA 57.366 38.095 0.00 0.00 0.00 3.18
736 760 2.906691 TGGCATTTTGGGTTGTTCAG 57.093 45.000 0.00 0.00 0.00 3.02
737 761 2.392662 TGGCATTTTGGGTTGTTCAGA 58.607 42.857 0.00 0.00 0.00 3.27
738 762 2.768527 TGGCATTTTGGGTTGTTCAGAA 59.231 40.909 0.00 0.00 0.00 3.02
739 763 3.198635 TGGCATTTTGGGTTGTTCAGAAA 59.801 39.130 0.00 0.00 0.00 2.52
740 764 4.141528 TGGCATTTTGGGTTGTTCAGAAAT 60.142 37.500 0.00 0.00 0.00 2.17
741 765 5.070981 TGGCATTTTGGGTTGTTCAGAAATA 59.929 36.000 0.00 0.00 0.00 1.40
742 766 5.994668 GGCATTTTGGGTTGTTCAGAAATAA 59.005 36.000 0.00 0.00 0.00 1.40
743 767 6.484977 GGCATTTTGGGTTGTTCAGAAATAAA 59.515 34.615 0.00 0.00 0.00 1.40
744 768 7.012799 GGCATTTTGGGTTGTTCAGAAATAAAA 59.987 33.333 0.00 0.00 0.00 1.52
745 769 8.401709 GCATTTTGGGTTGTTCAGAAATAAAAA 58.598 29.630 0.00 0.00 0.00 1.94
746 770 9.934190 CATTTTGGGTTGTTCAGAAATAAAAAG 57.066 29.630 0.00 0.00 0.00 2.27
747 771 8.499403 TTTTGGGTTGTTCAGAAATAAAAAGG 57.501 30.769 0.00 0.00 0.00 3.11
748 772 6.800072 TGGGTTGTTCAGAAATAAAAAGGT 57.200 33.333 0.00 0.00 0.00 3.50
749 773 7.189079 TGGGTTGTTCAGAAATAAAAAGGTT 57.811 32.000 0.00 0.00 0.00 3.50
750 774 7.269316 TGGGTTGTTCAGAAATAAAAAGGTTC 58.731 34.615 0.00 0.00 0.00 3.62
751 775 7.093289 TGGGTTGTTCAGAAATAAAAAGGTTCA 60.093 33.333 0.00 0.00 0.00 3.18
752 776 7.766738 GGGTTGTTCAGAAATAAAAAGGTTCAA 59.233 33.333 0.00 0.00 0.00 2.69
753 777 9.157104 GGTTGTTCAGAAATAAAAAGGTTCAAA 57.843 29.630 0.00 0.00 0.00 2.69
764 788 8.936070 ATAAAAAGGTTCAAATATAAACGGGC 57.064 30.769 0.00 0.00 0.00 6.13
765 789 4.994907 AAGGTTCAAATATAAACGGGCC 57.005 40.909 0.00 0.00 0.00 5.80
766 790 2.946990 AGGTTCAAATATAAACGGGCCG 59.053 45.455 27.06 27.06 0.00 6.13
767 791 2.684374 GGTTCAAATATAAACGGGCCGT 59.316 45.455 28.83 28.83 43.97 5.68
768 792 3.487879 GGTTCAAATATAAACGGGCCGTG 60.488 47.826 34.87 17.57 39.99 4.94
769 793 1.671845 TCAAATATAAACGGGCCGTGC 59.328 47.619 34.87 0.00 39.99 5.34
795 819 4.858680 GGGCCTTACCTCGCAGCC 62.859 72.222 0.84 0.00 43.09 4.85
796 820 4.858680 GGCCTTACCTCGCAGCCC 62.859 72.222 0.00 0.00 37.66 5.19
797 821 4.096003 GCCTTACCTCGCAGCCCA 62.096 66.667 0.00 0.00 0.00 5.36
798 822 2.187946 CCTTACCTCGCAGCCCAG 59.812 66.667 0.00 0.00 0.00 4.45
799 823 2.187946 CTTACCTCGCAGCCCAGG 59.812 66.667 3.75 3.75 35.69 4.45
800 824 4.096003 TTACCTCGCAGCCCAGGC 62.096 66.667 0.00 0.00 42.33 4.85
913 938 2.507992 CTGCGTGCGAGGGAAGAG 60.508 66.667 0.00 0.00 0.00 2.85
917 942 3.760035 GTGCGAGGGAAGAGCCGA 61.760 66.667 0.00 0.00 37.63 5.54
918 943 2.759973 TGCGAGGGAAGAGCCGAT 60.760 61.111 0.00 0.00 37.63 4.18
919 944 2.279784 GCGAGGGAAGAGCCGATG 60.280 66.667 0.00 0.00 37.63 3.84
920 945 2.279784 CGAGGGAAGAGCCGATGC 60.280 66.667 0.00 0.00 37.63 3.91
921 946 2.110006 GAGGGAAGAGCCGATGCC 59.890 66.667 0.00 0.00 38.69 4.40
922 947 3.468326 GAGGGAAGAGCCGATGCCC 62.468 68.421 0.00 0.00 38.69 5.36
923 948 3.483869 GGGAAGAGCCGATGCCCT 61.484 66.667 0.00 0.00 38.69 5.19
924 949 2.203126 GGAAGAGCCGATGCCCTG 60.203 66.667 0.00 0.00 38.69 4.45
925 950 2.203126 GAAGAGCCGATGCCCTGG 60.203 66.667 0.00 0.00 38.69 4.45
926 951 3.764160 GAAGAGCCGATGCCCTGGG 62.764 68.421 8.86 8.86 38.69 4.45
927 952 4.804420 AGAGCCGATGCCCTGGGA 62.804 66.667 19.27 1.59 38.69 4.37
928 953 3.564218 GAGCCGATGCCCTGGGAT 61.564 66.667 19.27 7.17 38.69 3.85
929 954 3.099170 AGCCGATGCCCTGGGATT 61.099 61.111 19.27 1.42 38.69 3.01
930 955 2.123726 GCCGATGCCCTGGGATTT 60.124 61.111 19.27 0.00 0.00 2.17
931 956 2.492773 GCCGATGCCCTGGGATTTG 61.493 63.158 19.27 6.26 0.00 2.32
932 957 2.492773 CCGATGCCCTGGGATTTGC 61.493 63.158 19.27 0.03 0.00 3.68
933 958 1.454479 CGATGCCCTGGGATTTGCT 60.454 57.895 19.27 0.00 0.00 3.91
934 959 0.179020 CGATGCCCTGGGATTTGCTA 60.179 55.000 19.27 0.00 0.00 3.49
935 960 1.750332 CGATGCCCTGGGATTTGCTAA 60.750 52.381 19.27 0.00 0.00 3.09
936 961 2.387757 GATGCCCTGGGATTTGCTAAA 58.612 47.619 19.27 0.00 0.00 1.85
937 962 2.317371 TGCCCTGGGATTTGCTAAAA 57.683 45.000 19.27 0.00 0.00 1.52
938 963 2.614259 TGCCCTGGGATTTGCTAAAAA 58.386 42.857 19.27 0.00 0.00 1.94
989 1014 1.271102 CCTAGGATAGTCAGCTTCGCC 59.729 57.143 1.05 0.00 36.82 5.54
1368 1396 1.009675 ACTAGCCCCTAACCATCCAGT 59.990 52.381 0.00 0.00 0.00 4.00
1369 1397 2.249214 ACTAGCCCCTAACCATCCAGTA 59.751 50.000 0.00 0.00 0.00 2.74
1436 1465 6.647334 TCCTTTTTCTGCACATGATTGTTA 57.353 33.333 0.00 0.00 32.34 2.41
1612 1709 5.738619 ACAGTCATGTGATAACTGGTACA 57.261 39.130 14.07 0.00 43.69 2.90
1748 1847 9.656323 TTAAGTAGATACTCTCTCTCTCTCTCT 57.344 37.037 0.00 0.00 34.99 3.10
1750 1849 7.531317 AGTAGATACTCTCTCTCTCTCTCTCT 58.469 42.308 0.00 0.00 35.28 3.10
1751 1850 6.909550 AGATACTCTCTCTCTCTCTCTCTC 57.090 45.833 0.00 0.00 0.00 3.20
1754 1853 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
1755 1854 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1757 1856 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1759 1858 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1760 1859 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1761 1860 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1762 1861 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1765 1870 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1774 8826 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
1775 8827 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
2077 9222 1.298602 GTTTTTGCCAAGTTGCTGGG 58.701 50.000 0.00 0.00 36.92 4.45
2205 9350 6.862608 CACAGTCACTGCAATTTGCTTTATTA 59.137 34.615 21.19 0.09 45.31 0.98
2304 9451 7.036220 CCGAGTGAGAAATACAGTGTTAGATT 58.964 38.462 0.00 0.00 0.00 2.40
2352 9502 2.045438 CGGCATTACTGGTGGGCA 60.045 61.111 0.00 0.00 0.00 5.36
2368 9518 0.737219 GGCACCAGCAGCATTAAGAG 59.263 55.000 0.00 0.00 44.61 2.85
2371 9522 2.686915 GCACCAGCAGCATTAAGAGAAT 59.313 45.455 0.00 0.00 41.58 2.40
2372 9523 3.129988 GCACCAGCAGCATTAAGAGAATT 59.870 43.478 0.00 0.00 41.58 2.17
2373 9524 4.381292 GCACCAGCAGCATTAAGAGAATTT 60.381 41.667 0.00 0.00 41.58 1.82
2374 9525 5.717119 CACCAGCAGCATTAAGAGAATTTT 58.283 37.500 0.00 0.00 0.00 1.82
2375 9526 6.161381 CACCAGCAGCATTAAGAGAATTTTT 58.839 36.000 0.00 0.00 0.00 1.94
2428 9579 6.653989 ACTCCCTCTGTTCACAAATATAAGG 58.346 40.000 0.00 0.00 0.00 2.69
2454 9606 8.290325 GTGTTCTAACTTTTTCTGAATCGGATT 58.710 33.333 2.19 2.19 0.00 3.01
2484 9637 4.574759 CACGTTTTAGTGTGTCTGTTCAC 58.425 43.478 0.00 0.00 37.35 3.18
2503 9656 5.147330 TCACTCATTTCAGTCCGTATGTT 57.853 39.130 0.00 0.00 0.00 2.71
2509 9662 2.736144 TCAGTCCGTATGTTGTCCAC 57.264 50.000 0.00 0.00 0.00 4.02
2551 9704 3.773418 TGTATTTGTGAACGGAGGGAA 57.227 42.857 0.00 0.00 0.00 3.97
2692 9977 9.563748 AAACTAGCCATTACAAAACTACTTGTA 57.436 29.630 0.00 0.00 40.08 2.41
2724 10009 3.435186 GCCAAGACCAGCGCTTCC 61.435 66.667 7.50 0.00 0.00 3.46
2728 10013 1.018226 CAAGACCAGCGCTTCCTCAG 61.018 60.000 7.50 0.00 0.00 3.35
2731 10016 0.107945 GACCAGCGCTTCCTCAGATT 60.108 55.000 7.50 0.00 0.00 2.40
2842 10201 6.989169 GCAATATACATCTTCTGGTCACTTCT 59.011 38.462 0.00 0.00 0.00 2.85
2982 10341 5.242838 TGGTTTCCAGGTGAACATTGTTATC 59.757 40.000 1.15 0.00 31.05 1.75
3041 10414 8.785468 TGCATGAATAACATTGATATTTGACG 57.215 30.769 0.00 0.00 37.07 4.35
3387 10760 4.608948 TGTTTTTGTCCACAAACCACTT 57.391 36.364 4.32 0.00 44.56 3.16
3401 10774 1.648720 CACTTGTGGTTGTGGCTCG 59.351 57.895 0.00 0.00 0.00 5.03
3449 10822 8.194769 TCTGTTTATTTCCAGAAAAACTTGGTC 58.805 33.333 0.00 0.00 34.88 4.02
3476 10850 6.017605 CAGTCACACTCTTGCACTTTTTATCT 60.018 38.462 0.00 0.00 0.00 1.98
3492 10866 1.043816 ATCTGCTATCCCCGTCACTG 58.956 55.000 0.00 0.00 0.00 3.66
3519 10893 3.823873 TGCCAACACCATCTTATTTTCGT 59.176 39.130 0.00 0.00 0.00 3.85
3524 10898 8.349983 GCCAACACCATCTTATTTTCGTTATAT 58.650 33.333 0.00 0.00 0.00 0.86
3620 10994 3.008923 TGGCAGAGATGGATTTGTGTACA 59.991 43.478 0.00 0.00 0.00 2.90
3815 11192 0.538057 TTCCCAAGCTGCTGGTTCAG 60.538 55.000 1.35 0.49 34.33 3.02
3885 11263 4.035208 AGCACTTGGTAAAAGAGTTTGTCG 59.965 41.667 0.00 0.00 0.00 4.35
3887 11265 5.499047 CACTTGGTAAAAGAGTTTGTCGAC 58.501 41.667 9.11 9.11 0.00 4.20
4030 11420 6.441088 TGGGCCCTTATTGTGTAAAATTTT 57.559 33.333 25.70 8.75 0.00 1.82
4359 11751 1.619827 CATTGGAACAGGTGTGGCATT 59.380 47.619 0.00 0.00 42.39 3.56
4602 11995 0.969894 GGTAGGTGCTCACAGTCAGT 59.030 55.000 2.21 0.00 0.00 3.41
4647 12040 6.260936 CCGGCATGACTTCTGTTTATTCTATT 59.739 38.462 0.00 0.00 0.00 1.73
4724 12117 4.083110 AGCTGATGTTTTGAATCTGAACCG 60.083 41.667 0.00 0.00 0.00 4.44
4876 12269 5.393787 CCGCACTAGTCTAGTCCATTTTACA 60.394 44.000 9.70 0.00 36.76 2.41
5059 12453 0.100861 GCTCTGTAGCCCGTACTCAC 59.899 60.000 0.00 0.00 43.40 3.51
5170 12564 3.126879 CGCCGCCAAGAAGATGCA 61.127 61.111 0.00 0.00 0.00 3.96
5171 12565 2.475466 CGCCGCCAAGAAGATGCAT 61.475 57.895 0.00 0.00 0.00 3.96
5335 12729 2.153366 TCCCGTCCGTGAACTTAAAC 57.847 50.000 0.00 0.00 0.00 2.01
5411 12808 1.372683 GTGCTGTGCTCCCTCTGAA 59.627 57.895 0.00 0.00 0.00 3.02
5453 12850 1.284785 TGGGTGTTGATTCATCCCTCC 59.715 52.381 17.18 7.10 37.77 4.30
5462 12859 3.778075 TGATTCATCCCTCCGTTCCTAAA 59.222 43.478 0.00 0.00 0.00 1.85
5472 12869 5.467705 CCTCCGTTCCTAAATATAAGACCG 58.532 45.833 0.00 0.00 0.00 4.79
5516 12913 4.701651 TCTGGATCTAAGCAAAATGTGTGG 59.298 41.667 0.00 0.00 0.00 4.17
5521 12918 6.096001 GGATCTAAGCAAAATGTGTGGATCTT 59.904 38.462 0.00 0.00 0.00 2.40
5522 12919 6.258230 TCTAAGCAAAATGTGTGGATCTTG 57.742 37.500 0.00 0.00 0.00 3.02
5535 12932 6.371548 TGTGTGGATCTTGCACTCTAAAATAC 59.628 38.462 13.07 0.00 39.59 1.89
5702 13248 2.439156 GATGTGGGGCTGGTGAGC 60.439 66.667 0.00 0.00 45.40 4.26
5787 13337 3.390183 CTGCTGCCTGCGGTGGATA 62.390 63.158 0.00 0.00 46.63 2.59
5818 13368 2.809601 CGTCCAACGGAGGCGAAG 60.810 66.667 0.00 0.00 38.08 3.79
5819 13369 2.434359 GTCCAACGGAGGCGAAGG 60.434 66.667 0.00 0.00 29.39 3.46
5891 13441 0.031994 CCCACGGAAAACAAGGCAAG 59.968 55.000 0.00 0.00 0.00 4.01
6013 13564 5.291371 GCGAGTTCCAAAGGATAGAAACTAC 59.709 44.000 0.00 0.00 0.00 2.73
6019 13570 1.038280 AGGATAGAAACTACGCGGGG 58.962 55.000 12.47 4.86 0.00 5.73
6024 13575 1.488390 AGAAACTACGCGGGGGATTA 58.512 50.000 12.47 0.00 0.00 1.75
6060 13611 4.818546 CGGAGGCATAAGATTTGTCTCATT 59.181 41.667 7.50 0.00 45.52 2.57
6146 13697 6.685527 TTACTCACGCAAAATTATATGCCA 57.314 33.333 5.51 0.00 39.39 4.92
6180 13731 0.605319 CTGCGGTGACCCAAAGCTTA 60.605 55.000 0.00 0.00 0.00 3.09
6185 13736 1.547901 GGTGACCCAAAGCTTAGCCTT 60.548 52.381 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
429 453 5.006455 CAGATCAACGACTCAGATGAAATGG 59.994 44.000 0.00 0.00 0.00 3.16
596 620 3.419793 CTGGAAGGAAGGCACAACA 57.580 52.632 0.00 0.00 0.00 3.33
608 632 2.441532 CATGCCTGGGCCTGGAAG 60.442 66.667 31.46 16.15 41.09 3.46
609 633 2.940467 TCATGCCTGGGCCTGGAA 60.940 61.111 31.46 23.27 41.09 3.53
610 634 3.731728 GTCATGCCTGGGCCTGGA 61.732 66.667 31.46 17.10 41.09 3.86
611 635 4.051167 TGTCATGCCTGGGCCTGG 62.051 66.667 24.13 24.13 41.09 4.45
612 636 2.753043 GTGTCATGCCTGGGCCTG 60.753 66.667 4.53 9.68 41.09 4.85
613 637 2.159101 ATTGTGTCATGCCTGGGCCT 62.159 55.000 4.53 0.00 41.09 5.19
614 638 1.259840 AATTGTGTCATGCCTGGGCC 61.260 55.000 9.28 0.00 41.09 5.80
615 639 0.108520 CAATTGTGTCATGCCTGGGC 60.109 55.000 4.43 4.43 42.35 5.36
616 640 0.108520 GCAATTGTGTCATGCCTGGG 60.109 55.000 7.40 0.00 34.03 4.45
617 641 0.892755 AGCAATTGTGTCATGCCTGG 59.107 50.000 7.40 0.00 40.93 4.45
618 642 3.853831 TTAGCAATTGTGTCATGCCTG 57.146 42.857 7.40 0.00 40.93 4.85
619 643 4.382254 CCATTTAGCAATTGTGTCATGCCT 60.382 41.667 7.40 0.00 40.93 4.75
620 644 3.866910 CCATTTAGCAATTGTGTCATGCC 59.133 43.478 7.40 0.00 40.93 4.40
621 645 3.866910 CCCATTTAGCAATTGTGTCATGC 59.133 43.478 7.40 0.00 40.34 4.06
622 646 3.866910 GCCCATTTAGCAATTGTGTCATG 59.133 43.478 7.40 5.28 0.00 3.07
623 647 3.118665 GGCCCATTTAGCAATTGTGTCAT 60.119 43.478 7.40 0.00 0.00 3.06
624 648 2.233431 GGCCCATTTAGCAATTGTGTCA 59.767 45.455 7.40 0.00 0.00 3.58
625 649 2.233431 TGGCCCATTTAGCAATTGTGTC 59.767 45.455 7.40 0.00 0.00 3.67
626 650 2.234414 CTGGCCCATTTAGCAATTGTGT 59.766 45.455 7.40 0.00 0.00 3.72
627 651 2.896168 CTGGCCCATTTAGCAATTGTG 58.104 47.619 7.40 0.00 0.00 3.33
628 652 1.207811 GCTGGCCCATTTAGCAATTGT 59.792 47.619 7.40 0.00 37.40 2.71
629 653 1.473788 GGCTGGCCCATTTAGCAATTG 60.474 52.381 13.50 0.00 39.15 2.32
630 654 0.832626 GGCTGGCCCATTTAGCAATT 59.167 50.000 13.50 0.00 39.15 2.32
631 655 0.031817 AGGCTGGCCCATTTAGCAAT 60.032 50.000 13.50 0.00 39.15 3.56
632 656 0.971959 CAGGCTGGCCCATTTAGCAA 60.972 55.000 13.50 0.00 39.15 3.91
633 657 1.380246 CAGGCTGGCCCATTTAGCA 60.380 57.895 13.50 0.00 39.15 3.49
634 658 1.076777 TCAGGCTGGCCCATTTAGC 60.077 57.895 15.73 0.77 36.58 3.09
635 659 0.034186 TGTCAGGCTGGCCCATTTAG 60.034 55.000 17.80 0.00 36.58 1.85
636 660 0.323360 GTGTCAGGCTGGCCCATTTA 60.323 55.000 17.80 0.00 36.58 1.40
637 661 1.607467 GTGTCAGGCTGGCCCATTT 60.607 57.895 17.80 0.00 36.58 2.32
638 662 2.036256 GTGTCAGGCTGGCCCATT 59.964 61.111 17.80 0.00 36.58 3.16
639 663 4.415150 CGTGTCAGGCTGGCCCAT 62.415 66.667 17.80 0.00 36.58 4.00
642 666 4.314440 TGTCGTGTCAGGCTGGCC 62.314 66.667 17.80 7.08 0.00 5.36
643 667 3.044305 GTGTCGTGTCAGGCTGGC 61.044 66.667 13.26 13.26 0.00 4.85
644 668 2.734723 CGTGTCGTGTCAGGCTGG 60.735 66.667 15.73 0.00 0.00 4.85
645 669 2.027605 ACGTGTCGTGTCAGGCTG 59.972 61.111 8.58 8.58 39.18 4.85
670 694 4.884257 GAATAGCACGCGGGCCGA 62.884 66.667 32.95 20.19 41.02 5.54
671 695 4.891727 AGAATAGCACGCGGGCCG 62.892 66.667 32.95 24.35 44.21 6.13
672 696 3.272334 CAGAATAGCACGCGGGCC 61.272 66.667 32.95 15.42 0.00 5.80
673 697 3.941836 GCAGAATAGCACGCGGGC 61.942 66.667 29.47 29.47 0.00 6.13
674 698 3.272334 GGCAGAATAGCACGCGGG 61.272 66.667 12.47 7.92 35.83 6.13
675 699 1.369091 AAAGGCAGAATAGCACGCGG 61.369 55.000 12.47 0.00 35.83 6.46
676 700 0.447801 AAAAGGCAGAATAGCACGCG 59.552 50.000 3.53 3.53 35.83 6.01
677 701 1.468054 CCAAAAGGCAGAATAGCACGC 60.468 52.381 0.00 0.00 35.83 5.34
678 702 1.133025 CCCAAAAGGCAGAATAGCACG 59.867 52.381 0.00 0.00 35.83 5.34
679 703 2.171003 ACCCAAAAGGCAGAATAGCAC 58.829 47.619 0.00 0.00 40.58 4.40
680 704 2.562298 CAACCCAAAAGGCAGAATAGCA 59.438 45.455 0.00 0.00 40.58 3.49
681 705 2.562738 ACAACCCAAAAGGCAGAATAGC 59.437 45.455 0.00 0.00 40.58 2.97
682 706 4.871933 AACAACCCAAAAGGCAGAATAG 57.128 40.909 0.00 0.00 40.58 1.73
683 707 5.104735 ACAAAACAACCCAAAAGGCAGAATA 60.105 36.000 0.00 0.00 40.58 1.75
684 708 4.198530 CAAAACAACCCAAAAGGCAGAAT 58.801 39.130 0.00 0.00 40.58 2.40
685 709 3.008485 ACAAAACAACCCAAAAGGCAGAA 59.992 39.130 0.00 0.00 40.58 3.02
686 710 2.569404 ACAAAACAACCCAAAAGGCAGA 59.431 40.909 0.00 0.00 40.58 4.26
687 711 2.677337 CACAAAACAACCCAAAAGGCAG 59.323 45.455 0.00 0.00 40.58 4.85
688 712 2.704572 CACAAAACAACCCAAAAGGCA 58.295 42.857 0.00 0.00 40.58 4.75
689 713 1.400142 GCACAAAACAACCCAAAAGGC 59.600 47.619 0.00 0.00 40.58 4.35
690 714 2.013400 GGCACAAAACAACCCAAAAGG 58.987 47.619 0.00 0.00 43.78 3.11
691 715 2.984562 AGGCACAAAACAACCCAAAAG 58.015 42.857 0.00 0.00 0.00 2.27
692 716 4.762289 ATAGGCACAAAACAACCCAAAA 57.238 36.364 0.00 0.00 0.00 2.44
693 717 4.762289 AATAGGCACAAAACAACCCAAA 57.238 36.364 0.00 0.00 0.00 3.28
694 718 4.762289 AAATAGGCACAAAACAACCCAA 57.238 36.364 0.00 0.00 0.00 4.12
695 719 4.762289 AAAATAGGCACAAAACAACCCA 57.238 36.364 0.00 0.00 0.00 4.51
696 720 4.274705 CCAAAAATAGGCACAAAACAACCC 59.725 41.667 0.00 0.00 0.00 4.11
697 721 5.416862 CCAAAAATAGGCACAAAACAACC 57.583 39.130 0.00 0.00 0.00 3.77
709 733 5.069318 ACAACCCAAAATGCCAAAAATAGG 58.931 37.500 0.00 0.00 0.00 2.57
710 734 6.261826 TGAACAACCCAAAATGCCAAAAATAG 59.738 34.615 0.00 0.00 0.00 1.73
711 735 6.122277 TGAACAACCCAAAATGCCAAAAATA 58.878 32.000 0.00 0.00 0.00 1.40
712 736 4.952335 TGAACAACCCAAAATGCCAAAAAT 59.048 33.333 0.00 0.00 0.00 1.82
713 737 4.335416 TGAACAACCCAAAATGCCAAAAA 58.665 34.783 0.00 0.00 0.00 1.94
714 738 3.944015 CTGAACAACCCAAAATGCCAAAA 59.056 39.130 0.00 0.00 0.00 2.44
715 739 3.198635 TCTGAACAACCCAAAATGCCAAA 59.801 39.130 0.00 0.00 0.00 3.28
716 740 2.768527 TCTGAACAACCCAAAATGCCAA 59.231 40.909 0.00 0.00 0.00 4.52
717 741 2.392662 TCTGAACAACCCAAAATGCCA 58.607 42.857 0.00 0.00 0.00 4.92
718 742 3.467374 TTCTGAACAACCCAAAATGCC 57.533 42.857 0.00 0.00 0.00 4.40
719 743 7.489574 TTTATTTCTGAACAACCCAAAATGC 57.510 32.000 0.00 0.00 0.00 3.56
720 744 9.934190 CTTTTTATTTCTGAACAACCCAAAATG 57.066 29.630 0.00 0.00 0.00 2.32
721 745 9.119418 CCTTTTTATTTCTGAACAACCCAAAAT 57.881 29.630 0.00 0.00 0.00 1.82
722 746 8.103935 ACCTTTTTATTTCTGAACAACCCAAAA 58.896 29.630 0.00 0.00 0.00 2.44
723 747 7.625469 ACCTTTTTATTTCTGAACAACCCAAA 58.375 30.769 0.00 0.00 0.00 3.28
724 748 7.189079 ACCTTTTTATTTCTGAACAACCCAA 57.811 32.000 0.00 0.00 0.00 4.12
725 749 6.800072 ACCTTTTTATTTCTGAACAACCCA 57.200 33.333 0.00 0.00 0.00 4.51
726 750 7.269316 TGAACCTTTTTATTTCTGAACAACCC 58.731 34.615 0.00 0.00 0.00 4.11
727 751 8.710835 TTGAACCTTTTTATTTCTGAACAACC 57.289 30.769 0.00 0.00 0.00 3.77
738 762 9.373603 GCCCGTTTATATTTGAACCTTTTTATT 57.626 29.630 0.00 0.00 0.00 1.40
739 763 7.982919 GGCCCGTTTATATTTGAACCTTTTTAT 59.017 33.333 0.00 0.00 0.00 1.40
740 764 7.321908 GGCCCGTTTATATTTGAACCTTTTTA 58.678 34.615 0.00 0.00 0.00 1.52
741 765 6.167685 GGCCCGTTTATATTTGAACCTTTTT 58.832 36.000 0.00 0.00 0.00 1.94
742 766 5.622687 CGGCCCGTTTATATTTGAACCTTTT 60.623 40.000 0.00 0.00 0.00 2.27
743 767 4.142337 CGGCCCGTTTATATTTGAACCTTT 60.142 41.667 0.00 0.00 0.00 3.11
744 768 3.379057 CGGCCCGTTTATATTTGAACCTT 59.621 43.478 0.00 0.00 0.00 3.50
745 769 2.946990 CGGCCCGTTTATATTTGAACCT 59.053 45.455 0.00 0.00 0.00 3.50
746 770 2.684374 ACGGCCCGTTTATATTTGAACC 59.316 45.455 1.02 0.00 36.35 3.62
747 771 3.687200 CACGGCCCGTTTATATTTGAAC 58.313 45.455 5.76 0.00 38.32 3.18
748 772 2.097791 GCACGGCCCGTTTATATTTGAA 59.902 45.455 5.76 0.00 38.32 2.69
749 773 1.671845 GCACGGCCCGTTTATATTTGA 59.328 47.619 5.76 0.00 38.32 2.69
750 774 1.268845 GGCACGGCCCGTTTATATTTG 60.269 52.381 5.76 0.00 44.06 2.32
751 775 1.026584 GGCACGGCCCGTTTATATTT 58.973 50.000 5.76 0.00 44.06 1.40
752 776 2.710440 GGCACGGCCCGTTTATATT 58.290 52.632 5.76 0.00 44.06 1.28
753 777 4.468007 GGCACGGCCCGTTTATAT 57.532 55.556 5.76 0.00 44.06 0.86
778 802 4.858680 GGCTGCGAGGTAAGGCCC 62.859 72.222 0.00 0.00 38.26 5.80
780 804 4.096003 TGGGCTGCGAGGTAAGGC 62.096 66.667 0.00 0.00 38.21 4.35
781 805 2.187946 CTGGGCTGCGAGGTAAGG 59.812 66.667 0.00 0.00 0.00 2.69
782 806 2.187946 CCTGGGCTGCGAGGTAAG 59.812 66.667 7.92 0.00 0.00 2.34
783 807 4.096003 GCCTGGGCTGCGAGGTAA 62.096 66.667 15.40 0.00 38.26 2.85
828 852 4.735132 TGACACGGCCTAGCACGC 62.735 66.667 0.00 0.00 0.00 5.34
829 853 2.507102 CTGACACGGCCTAGCACG 60.507 66.667 0.00 3.18 0.00 5.34
830 854 1.601419 TACCTGACACGGCCTAGCAC 61.601 60.000 0.00 0.00 0.00 4.40
831 855 1.304630 TACCTGACACGGCCTAGCA 60.305 57.895 0.00 0.00 0.00 3.49
832 856 1.141234 GTACCTGACACGGCCTAGC 59.859 63.158 0.00 0.00 0.00 3.42
833 857 1.432251 CGTACCTGACACGGCCTAG 59.568 63.158 0.00 0.00 35.78 3.02
834 858 2.703798 GCGTACCTGACACGGCCTA 61.704 63.158 0.00 0.00 39.75 3.93
835 859 4.065281 GCGTACCTGACACGGCCT 62.065 66.667 0.00 0.00 39.75 5.19
843 867 0.391927 CCAAAATCCCGCGTACCTGA 60.392 55.000 4.92 0.00 0.00 3.86
853 877 3.460868 CAGCCGGGCCAAAATCCC 61.461 66.667 17.02 0.00 40.43 3.85
854 878 4.147449 GCAGCCGGGCCAAAATCC 62.147 66.667 17.02 0.00 0.00 3.01
913 938 2.123726 AAATCCCAGGGCATCGGC 60.124 61.111 0.00 0.00 40.13 5.54
915 940 0.179020 TAGCAAATCCCAGGGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
916 941 2.071778 TTAGCAAATCCCAGGGCATC 57.928 50.000 0.00 0.00 0.00 3.91
917 942 2.548464 TTTAGCAAATCCCAGGGCAT 57.452 45.000 0.00 0.00 0.00 4.40
918 943 2.317371 TTTTAGCAAATCCCAGGGCA 57.683 45.000 0.00 0.00 0.00 5.36
1368 1396 7.468441 CAACAGTGCGAAAACCAATGTATATA 58.532 34.615 0.00 0.00 40.17 0.86
1369 1397 6.321717 CAACAGTGCGAAAACCAATGTATAT 58.678 36.000 0.00 0.00 40.17 0.86
1499 1537 6.825213 TGTTGAGCAGCTTATACATGAAATCT 59.175 34.615 0.00 0.00 0.00 2.40
1612 1709 8.371699 GCACTGAAGATAAGGGTCTTTATATCT 58.628 37.037 0.00 0.00 38.51 1.98
1733 1832 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1734 1833 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1735 1834 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1737 1836 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1745 1844 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1746 1845 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1748 1847 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1750 1849 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1751 1850 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
1754 1853 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
1755 1854 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
1757 1856 2.412591 AGGGGAGAGAGAGAGAGAGAG 58.587 57.143 0.00 0.00 0.00 3.20
1759 1858 3.045634 TGTAGGGGAGAGAGAGAGAGAG 58.954 54.545 0.00 0.00 0.00 3.20
1760 1859 3.138123 TGTAGGGGAGAGAGAGAGAGA 57.862 52.381 0.00 0.00 0.00 3.10
1761 1860 3.202151 AGTTGTAGGGGAGAGAGAGAGAG 59.798 52.174 0.00 0.00 0.00 3.20
1762 1861 3.053991 CAGTTGTAGGGGAGAGAGAGAGA 60.054 52.174 0.00 0.00 0.00 3.10
1765 1870 2.024846 TCCAGTTGTAGGGGAGAGAGAG 60.025 54.545 0.00 0.00 0.00 3.20
2077 9222 6.931840 CACCCTGATAAAGGCTCTAATTAGAC 59.068 42.308 11.24 8.45 45.89 2.59
2227 9372 6.639563 TCACTATAGCTGCACAATGACTAAA 58.360 36.000 1.02 0.00 0.00 1.85
2304 9451 1.824230 AGCCGCCATTATTTTGCTTGA 59.176 42.857 0.00 0.00 0.00 3.02
2352 9502 5.990120 AAAATTCTCTTAATGCTGCTGGT 57.010 34.783 0.00 0.00 0.00 4.00
2376 9527 7.509141 TGAGTTGCTAACATCAGATGAAAAA 57.491 32.000 17.81 1.72 0.00 1.94
2377 9528 7.229306 ACTTGAGTTGCTAACATCAGATGAAAA 59.771 33.333 17.81 1.13 0.00 2.29
2378 9529 6.712095 ACTTGAGTTGCTAACATCAGATGAAA 59.288 34.615 17.81 3.57 0.00 2.69
2428 9579 7.186021 TCCGATTCAGAAAAAGTTAGAACAC 57.814 36.000 0.00 0.00 0.00 3.32
2484 9637 4.330074 GGACAACATACGGACTGAAATGAG 59.670 45.833 7.93 4.03 0.00 2.90
2503 9656 9.421806 GATGTTTTTGATATTTCAATGTGGACA 57.578 29.630 0.00 2.39 41.38 4.02
2590 9743 2.351738 GCTCGGTTTTCCTGTTCATTGG 60.352 50.000 0.00 0.00 37.95 3.16
2692 9977 0.698238 TTGGCCAGTAGCATTCACCT 59.302 50.000 5.11 0.00 46.50 4.00
2825 10113 4.081752 AGTGCTAGAAGTGACCAGAAGATG 60.082 45.833 0.00 0.00 0.00 2.90
3038 10411 1.675116 GGACCCTAGGTTTGAAGCGTC 60.675 57.143 8.29 5.06 35.25 5.19
3041 10414 2.557056 GTTTGGACCCTAGGTTTGAAGC 59.443 50.000 8.29 0.00 35.25 3.86
3098 10471 1.796253 CGTGTAGCGTCGCCAATAGAA 60.796 52.381 14.86 0.00 35.54 2.10
3250 10623 4.965532 AGCATCTAGACAGAGTATTTGGGT 59.034 41.667 0.00 0.00 33.22 4.51
3300 10673 7.717875 TGTACATTGAAACCTTAGTAAAGCAGT 59.282 33.333 0.00 0.00 0.00 4.40
3387 10760 3.055747 TGATATTACGAGCCACAACCACA 60.056 43.478 0.00 0.00 0.00 4.17
3393 10766 5.146010 TGCATATGATATTACGAGCCACA 57.854 39.130 6.97 0.00 0.00 4.17
3449 10822 1.945387 AGTGCAAGAGTGTGACTGTG 58.055 50.000 0.00 0.00 0.00 3.66
3476 10850 0.032912 TACCAGTGACGGGGATAGCA 60.033 55.000 6.73 0.00 0.00 3.49
3492 10866 5.852282 AATAAGATGGTGTTGGCAATACC 57.148 39.130 32.02 32.02 42.45 2.73
3519 10893 5.592688 GCCCTTAACCTGCAGAACAATATAA 59.407 40.000 17.39 2.93 0.00 0.98
3524 10898 1.133637 TGCCCTTAACCTGCAGAACAA 60.134 47.619 17.39 4.49 0.00 2.83
3721 11097 1.072173 TCCAACACCATGACTCCACAG 59.928 52.381 0.00 0.00 0.00 3.66
3869 11247 3.183172 GTCCGTCGACAAACTCTTTTACC 59.817 47.826 17.16 0.00 38.99 2.85
3885 11263 7.307219 GCAATACTATGGTGATTTAAGTCCGTC 60.307 40.741 0.00 0.00 0.00 4.79
3887 11265 6.706270 AGCAATACTATGGTGATTTAAGTCCG 59.294 38.462 0.00 0.00 0.00 4.79
4030 11420 9.487442 TTGCATATACCATATACAGGATACAGA 57.513 33.333 0.00 0.00 41.41 3.41
4063 11453 7.472334 AAATGCAATAAGACAGTTTCCAGAT 57.528 32.000 0.00 0.00 0.00 2.90
4359 11751 4.576873 TGCACCACACGAATTAGAAAGAAA 59.423 37.500 0.00 0.00 0.00 2.52
4623 12016 6.851222 ATAGAATAAACAGAAGTCATGCCG 57.149 37.500 0.00 0.00 0.00 5.69
4710 12103 3.191162 CCTGATTGCGGTTCAGATTCAAA 59.809 43.478 10.86 0.00 42.63 2.69
4714 12107 1.683011 CCCCTGATTGCGGTTCAGATT 60.683 52.381 10.86 0.00 42.63 2.40
4724 12117 1.389609 CCACAGCATCCCCTGATTGC 61.390 60.000 0.00 0.00 36.67 3.56
4849 12242 1.984066 GGACTAGACTAGTGCGGGAT 58.016 55.000 19.90 0.00 39.59 3.85
4902 12295 1.415659 CGATTGCTCCCTGGAGAAGAT 59.584 52.381 17.38 6.72 44.53 2.40
5008 12402 1.134965 GCACGGAGCTACTGATCAGTT 60.135 52.381 32.14 15.84 42.54 3.16
5170 12564 1.898154 GAGATGGCGGCCCGTATAT 59.102 57.895 17.97 1.93 0.00 0.86
5171 12565 2.632544 CGAGATGGCGGCCCGTATA 61.633 63.158 17.97 0.00 0.00 1.47
5255 12649 1.761784 CAGAAGAGAGGGAGGGTGATG 59.238 57.143 0.00 0.00 0.00 3.07
5335 12729 4.506255 GGATGGTGCCTTCCCCCG 62.506 72.222 11.00 0.00 35.10 5.73
5411 12808 3.479203 TTGGGCGATGCTCCGGAT 61.479 61.111 3.57 0.00 0.00 4.18
5437 12834 2.355716 GGAACGGAGGGATGAATCAACA 60.356 50.000 0.00 0.00 0.00 3.33
5489 12886 7.652909 CACACATTTTGCTTAGATCCAGAAAAA 59.347 33.333 9.77 9.77 33.99 1.94
5490 12887 7.147312 CACACATTTTGCTTAGATCCAGAAAA 58.853 34.615 0.00 0.00 0.00 2.29
5494 12891 4.701651 TCCACACATTTTGCTTAGATCCAG 59.298 41.667 0.00 0.00 0.00 3.86
5504 12901 2.733026 GTGCAAGATCCACACATTTTGC 59.267 45.455 5.39 5.39 41.87 3.68
5516 12913 6.043411 ACTCCGTATTTTAGAGTGCAAGATC 58.957 40.000 0.00 0.00 39.36 2.75
5521 12918 5.047847 GCATACTCCGTATTTTAGAGTGCA 58.952 41.667 2.26 0.00 40.93 4.57
5522 12919 4.448060 GGCATACTCCGTATTTTAGAGTGC 59.552 45.833 2.26 0.00 40.93 4.40
5535 12932 3.002042 CGGACGTATATAGGCATACTCCG 59.998 52.174 13.60 13.60 40.94 4.63
5544 12941 7.601073 TGAACTACATACGGACGTATATAGG 57.399 40.000 25.06 13.73 40.47 2.57
5552 12949 7.688478 TTTCAATATGAACTACATACGGACG 57.312 36.000 0.00 0.00 43.12 4.79
5607 13004 9.894783 CAATAAGTTCGCATACTGTAGTATAGT 57.105 33.333 4.84 4.84 39.06 2.12
5641 13038 6.311200 GCAAAAATTCTCTCTCTCTCTCAGAC 59.689 42.308 0.00 0.00 0.00 3.51
5643 13040 5.581874 GGCAAAAATTCTCTCTCTCTCTCAG 59.418 44.000 0.00 0.00 0.00 3.35
5645 13042 4.566360 CGGCAAAAATTCTCTCTCTCTCTC 59.434 45.833 0.00 0.00 0.00 3.20
5646 13043 4.221703 TCGGCAAAAATTCTCTCTCTCTCT 59.778 41.667 0.00 0.00 0.00 3.10
5647 13044 4.499183 TCGGCAAAAATTCTCTCTCTCTC 58.501 43.478 0.00 0.00 0.00 3.20
5648 13045 4.502962 CTCGGCAAAAATTCTCTCTCTCT 58.497 43.478 0.00 0.00 0.00 3.10
5787 13337 1.227556 GGACGTGTGCAAGGACAGT 60.228 57.895 0.00 0.00 0.00 3.55
5794 13344 1.885388 CTCCGTTGGACGTGTGCAA 60.885 57.895 2.62 2.62 40.58 4.08
5799 13349 3.851845 TTCGCCTCCGTTGGACGTG 62.852 63.158 0.00 0.00 40.58 4.49
5811 13361 2.604686 TCCTCACAGCCTTCGCCT 60.605 61.111 0.00 0.00 34.57 5.52
5818 13368 2.105930 CTAGCGCTCCTCACAGCC 59.894 66.667 16.34 0.00 35.84 4.85
5819 13369 2.584694 GCTAGCGCTCCTCACAGC 60.585 66.667 16.34 13.37 35.90 4.40
5821 13371 1.938657 GAGTGCTAGCGCTCCTCACA 61.939 60.000 37.33 13.95 45.02 3.58
5822 13372 1.226831 GAGTGCTAGCGCTCCTCAC 60.227 63.158 37.33 19.87 45.02 3.51
5891 13441 8.020244 CAGCCTTTCAAACTATCTTCTTCTTTC 58.980 37.037 0.00 0.00 0.00 2.62
5976 13527 5.142061 TGGAACTCGCAGACATAGTTAAA 57.858 39.130 0.00 0.00 33.72 1.52
6031 13582 2.918712 ATCTTATGCCTCCGTCTTGG 57.081 50.000 0.00 0.00 40.09 3.61
6032 13583 3.941483 ACAAATCTTATGCCTCCGTCTTG 59.059 43.478 0.00 0.00 0.00 3.02
6035 13586 3.798202 AGACAAATCTTATGCCTCCGTC 58.202 45.455 0.00 0.00 0.00 4.79
6037 13588 3.797039 TGAGACAAATCTTATGCCTCCG 58.203 45.455 0.00 0.00 34.34 4.63
6038 13589 5.824624 TGAATGAGACAAATCTTATGCCTCC 59.175 40.000 0.00 0.00 34.34 4.30
6080 13631 8.193250 TGAGTGTGTTGTAAAACTCTAAACTC 57.807 34.615 8.70 8.70 39.80 3.01
6081 13632 8.556213 TTGAGTGTGTTGTAAAACTCTAAACT 57.444 30.769 0.00 0.00 39.80 2.66
6082 13633 9.783256 ATTTGAGTGTGTTGTAAAACTCTAAAC 57.217 29.630 0.00 0.00 37.72 2.01
6085 13636 9.602568 TGTATTTGAGTGTGTTGTAAAACTCTA 57.397 29.630 0.00 0.00 39.80 2.43
6086 13637 8.395633 GTGTATTTGAGTGTGTTGTAAAACTCT 58.604 33.333 0.00 0.00 39.80 3.24
6087 13638 7.372396 CGTGTATTTGAGTGTGTTGTAAAACTC 59.628 37.037 0.00 0.00 39.59 3.01
6097 13648 4.447724 GTCATGTCGTGTATTTGAGTGTGT 59.552 41.667 0.00 0.00 0.00 3.72
6146 13697 2.384203 GCAGGCGCGAAAAGACTAT 58.616 52.632 12.10 0.00 0.00 2.12
6180 13731 1.845143 AGCATCATCTTGGAGAAGGCT 59.155 47.619 0.00 0.00 0.00 4.58
6185 13736 4.964897 TCCTTCTTAGCATCATCTTGGAGA 59.035 41.667 0.00 0.00 0.00 3.71
6222 13773 2.882927 GGGTTTTCCGGCATAAATCC 57.117 50.000 0.00 3.17 41.82 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.