Multiple sequence alignment - TraesCS6D01G153200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G153200 chr6D 100.000 3360 0 0 3674 7033 127186298 127189657 0.000000e+00 6205.0
1 TraesCS6D01G153200 chr6D 100.000 2747 0 0 643 3389 127183267 127186013 0.000000e+00 5073.0
2 TraesCS6D01G153200 chr6D 100.000 342 0 0 1 342 127182625 127182966 3.580000e-177 632.0
3 TraesCS6D01G153200 chr6D 83.721 172 21 5 4126 4296 37715249 37715414 9.450000e-34 156.0
4 TraesCS6D01G153200 chr6A 93.374 2641 100 36 757 3357 151471119 151468514 0.000000e+00 3838.0
5 TraesCS6D01G153200 chr6A 98.071 1244 23 1 3679 4921 151468320 151467077 0.000000e+00 2163.0
6 TraesCS6D01G153200 chr6A 92.758 1298 66 15 4920 6194 151466961 151465669 0.000000e+00 1851.0
7 TraesCS6D01G153200 chr6A 88.218 348 29 6 1 342 151471840 151471499 8.490000e-109 405.0
8 TraesCS6D01G153200 chr6A 84.677 124 18 1 6910 7033 151464981 151464859 9.580000e-24 122.0
9 TraesCS6D01G153200 chr6A 85.965 57 4 3 6311 6366 537310262 537310315 2.740000e-04 58.4
10 TraesCS6D01G153200 chr6B 93.417 2309 90 29 1073 3357 226358015 226360285 0.000000e+00 3365.0
11 TraesCS6D01G153200 chr6B 97.749 1066 21 3 3858 4921 226360508 226361572 0.000000e+00 1832.0
12 TraesCS6D01G153200 chr6B 91.795 780 48 13 4920 5693 226361688 226362457 0.000000e+00 1072.0
13 TraesCS6D01G153200 chr6B 90.683 644 45 10 5746 6383 226362812 226363446 0.000000e+00 843.0
14 TraesCS6D01G153200 chr6B 92.705 329 11 8 643 962 226357452 226357776 4.970000e-126 462.0
15 TraesCS6D01G153200 chr6B 90.805 348 24 5 2 342 226356949 226357295 6.430000e-125 459.0
16 TraesCS6D01G153200 chr6B 98.148 162 3 0 3674 3835 226360354 226360515 4.150000e-72 283.0
17 TraesCS6D01G153200 chr6B 76.923 260 33 14 6699 6934 226363911 226364167 9.580000e-24 122.0
18 TraesCS6D01G153200 chr6B 98.148 54 1 0 5709 5762 226362750 226362803 2.090000e-15 95.3
19 TraesCS6D01G153200 chr6B 100.000 45 0 0 5709 5753 226362643 226362687 4.520000e-12 84.2
20 TraesCS6D01G153200 chr6B 100.000 33 0 0 3357 3389 226360298 226360330 2.120000e-05 62.1
21 TraesCS6D01G153200 chr4A 90.653 1134 56 20 1446 2542 669571538 669572658 0.000000e+00 1461.0
22 TraesCS6D01G153200 chr4A 97.368 228 6 0 2541 2768 669572752 669572979 8.550000e-104 388.0
23 TraesCS6D01G153200 chr4A 94.531 128 7 0 1317 1444 669558773 669558900 1.550000e-46 198.0
24 TraesCS6D01G153200 chr4A 91.667 60 3 2 6387 6446 520963271 520963328 1.630000e-11 82.4
25 TraesCS6D01G153200 chr7D 83.036 224 26 8 4040 4261 487867417 487867630 7.200000e-45 193.0
26 TraesCS6D01G153200 chr7D 83.036 224 25 11 4040 4261 37824300 37824088 2.590000e-44 191.0
27 TraesCS6D01G153200 chr1D 83.036 224 26 8 4040 4261 90549618 90549831 7.200000e-45 193.0
28 TraesCS6D01G153200 chr3D 83.036 224 25 9 4040 4261 25372492 25372704 2.590000e-44 191.0
29 TraesCS6D01G153200 chr7B 79.000 300 43 14 2141 2436 699169011 699169294 3.350000e-43 187.0
30 TraesCS6D01G153200 chr7B 90.278 72 7 0 2307 2378 696102646 696102717 2.090000e-15 95.3
31 TraesCS6D01G153200 chr7B 93.651 63 3 1 6397 6458 138724971 138724909 7.510000e-15 93.5
32 TraesCS6D01G153200 chr7B 82.540 63 10 1 6401 6462 117631192 117631130 4.000000e-03 54.7
33 TraesCS6D01G153200 chr5A 82.589 224 25 10 4040 4261 34849994 34849783 1.200000e-42 185.0
34 TraesCS6D01G153200 chr5A 94.030 67 3 1 4856 4921 341660110 341660176 4.490000e-17 100.0
35 TraesCS6D01G153200 chr5A 81.600 125 17 6 6886 7005 399969911 399969788 1.610000e-16 99.0
36 TraesCS6D01G153200 chr5A 87.143 70 6 3 6389 6458 631762161 631762095 7.560000e-10 76.8
37 TraesCS6D01G153200 chr4D 78.756 193 23 13 4070 4261 14581281 14581106 5.770000e-21 113.0
38 TraesCS6D01G153200 chr4D 78.453 181 34 4 2262 2438 70348514 70348693 5.770000e-21 113.0
39 TraesCS6D01G153200 chr4D 96.875 64 2 0 4858 4921 455326610 455326547 2.680000e-19 108.0
40 TraesCS6D01G153200 chr5B 92.857 70 5 0 4849 4918 491710354 491710423 1.250000e-17 102.0
41 TraesCS6D01G153200 chr2D 91.892 74 4 2 4849 4921 384257036 384256964 1.250000e-17 102.0
42 TraesCS6D01G153200 chr4B 92.958 71 2 3 6389 6458 95880668 95880600 4.490000e-17 100.0
43 TraesCS6D01G153200 chr4B 94.030 67 3 1 4856 4921 639479501 639479435 4.490000e-17 100.0
44 TraesCS6D01G153200 chr3B 90.909 77 4 3 4848 4921 762314947 762315023 4.490000e-17 100.0
45 TraesCS6D01G153200 chr2A 79.470 151 22 7 6887 7031 369624842 369624695 1.610000e-16 99.0
46 TraesCS6D01G153200 chr2B 90.411 73 5 2 6388 6458 777530116 777530044 2.090000e-15 95.3
47 TraesCS6D01G153200 chr7A 86.905 84 6 5 4839 4921 424927691 424927612 9.720000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G153200 chr6D 127182625 127189657 7032 False 3970.000000 6205 100.000000 1 7033 3 chr6D.!!$F2 7032
1 TraesCS6D01G153200 chr6A 151464859 151471840 6981 True 1675.800000 3838 91.419600 1 7033 5 chr6A.!!$R1 7032
2 TraesCS6D01G153200 chr6B 226356949 226364167 7218 False 789.054545 3365 93.670273 2 6934 11 chr6B.!!$F1 6932
3 TraesCS6D01G153200 chr4A 669571538 669572979 1441 False 924.500000 1461 94.010500 1446 2768 2 chr4A.!!$F3 1322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 329 0.119561 TCCCAGCCCAACCCTAACTA 59.880 55.000 0.00 0.0 0.00 2.24 F
1297 1443 1.144057 GCCGCTGTGGTGCTAGTAT 59.856 57.895 9.31 0.0 41.21 2.12 F
2891 3190 0.528684 GCGACACTCTGGACCATAGC 60.529 60.000 6.79 0.0 0.00 2.97 F
2953 3252 1.208052 TGTGGATACTGCTCCAAGCTC 59.792 52.381 1.51 0.0 46.66 4.09 F
3256 3555 1.992667 TGTTGCTGCGTCGAGAATTAG 59.007 47.619 0.00 0.0 0.00 1.73 F
4993 5423 1.302271 CAGGAAGCAGCTGAGCACA 60.302 57.895 20.43 0.0 36.85 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1962 0.175760 TGTAGGGCGAATCTGAGTGC 59.824 55.000 0.00 0.00 0.00 4.40 R
3004 3303 0.328450 TCCTAGCCCATGGGGTTCAT 60.328 55.000 38.98 11.54 46.51 2.57 R
3884 4196 2.564947 ACAAAGCCAAAACTCACACCAA 59.435 40.909 0.00 0.00 0.00 3.67 R
4469 4782 3.141398 GAGGCAACATGAGAAACAGACA 58.859 45.455 0.00 0.00 41.41 3.41 R
5243 5674 1.062428 TCCTACGAATCATCCCAGGGT 60.062 52.381 5.01 0.00 0.00 4.34 R
6783 7895 0.036483 GGCCGCCATTTGACCATTTT 60.036 50.000 3.91 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 191 7.227049 ACAACAGAAAGGAAAGAAACAAAGA 57.773 32.000 0.00 0.00 0.00 2.52
244 252 7.251704 AGTCAATATATTTTTGCCGTCAGAG 57.748 36.000 0.00 0.00 0.00 3.35
245 253 6.260936 AGTCAATATATTTTTGCCGTCAGAGG 59.739 38.462 0.00 0.00 0.00 3.69
248 256 7.122055 TCAATATATTTTTGCCGTCAGAGGTTT 59.878 33.333 0.00 0.00 0.00 3.27
295 303 6.072948 CGTGACTATCATATTCTTCCTCTCGT 60.073 42.308 0.00 0.00 0.00 4.18
300 308 4.458397 TCATATTCTTCCTCTCGTACCGT 58.542 43.478 0.00 0.00 0.00 4.83
321 329 0.119561 TCCCAGCCCAACCCTAACTA 59.880 55.000 0.00 0.00 0.00 2.24
335 343 2.783510 CCTAACTATCAACCCCCACCAT 59.216 50.000 0.00 0.00 0.00 3.55
672 680 1.804151 CGCTTCCCAAAATTCACTCGA 59.196 47.619 0.00 0.00 0.00 4.04
712 720 5.529791 GCTAAAAGGAAAACCAGAGGAAAC 58.470 41.667 0.00 0.00 0.00 2.78
726 734 5.128008 CCAGAGGAAACAAACCCAACTAAAA 59.872 40.000 0.00 0.00 0.00 1.52
736 744 6.837048 ACAAACCCAACTAAAACCATAGAACT 59.163 34.615 0.00 0.00 0.00 3.01
741 749 8.442374 ACCCAACTAAAACCATAGAACTAGAAA 58.558 33.333 0.00 0.00 0.00 2.52
770 780 1.578583 ACAGAAAACAGACGAACCCG 58.421 50.000 0.00 0.00 42.50 5.28
962 979 2.631384 TCAACTCCATTCCCTCCTTCA 58.369 47.619 0.00 0.00 0.00 3.02
963 980 3.192944 TCAACTCCATTCCCTCCTTCAT 58.807 45.455 0.00 0.00 0.00 2.57
964 981 4.370776 TCAACTCCATTCCCTCCTTCATA 58.629 43.478 0.00 0.00 0.00 2.15
965 982 4.977739 TCAACTCCATTCCCTCCTTCATAT 59.022 41.667 0.00 0.00 0.00 1.78
968 985 7.128728 TCAACTCCATTCCCTCCTTCATATTTA 59.871 37.037 0.00 0.00 0.00 1.40
969 986 6.842676 ACTCCATTCCCTCCTTCATATTTAC 58.157 40.000 0.00 0.00 0.00 2.01
970 987 6.621514 ACTCCATTCCCTCCTTCATATTTACT 59.378 38.462 0.00 0.00 0.00 2.24
1001 1020 2.792599 CCGTTAGCGCTCTCTCGT 59.207 61.111 16.34 0.00 36.67 4.18
1015 1034 1.153823 CTCGTTCCGATTCGCCACT 60.154 57.895 0.00 0.00 34.61 4.00
1058 1082 2.612251 CCTCCCCCTCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
1113 1258 1.445238 GTGAGGACTCAGCGTCTGC 60.445 63.158 1.56 0.00 42.44 4.26
1134 1279 1.676529 CTTCTCGATCTCCTGCCGTTA 59.323 52.381 0.00 0.00 0.00 3.18
1297 1443 1.144057 GCCGCTGTGGTGCTAGTAT 59.856 57.895 9.31 0.00 41.21 2.12
1313 1459 4.142227 GCTAGTATTTTCAGGTGGAGACGA 60.142 45.833 0.00 0.00 0.00 4.20
1358 1504 4.326826 TCTCATCCAAGAAATCGCAGTTT 58.673 39.130 0.00 0.00 0.00 2.66
1380 1526 6.475596 TTTTTGTTTACCCCGTTCCAAATA 57.524 33.333 0.00 0.00 0.00 1.40
1384 1530 6.026947 TGTTTACCCCGTTCCAAATAATTG 57.973 37.500 0.00 0.00 36.25 2.32
1401 1547 9.150348 CAAATAATTGTACCCAAGAAACAATCC 57.850 33.333 0.84 0.00 41.67 3.01
1532 1688 4.729227 TTTGTTCCTCCAAACTTTCCAC 57.271 40.909 0.00 0.00 29.67 4.02
1573 1729 7.592164 GGTTTTGCGTTTGCTTCTAAAAGTATA 59.408 33.333 0.00 0.00 43.34 1.47
1588 1745 3.059352 AGTATATGGCCGCCATTCTTC 57.941 47.619 29.59 16.74 42.23 2.87
1632 1789 2.296190 ACCGCAATCCCTTCTTGTTTTC 59.704 45.455 0.00 0.00 0.00 2.29
1803 1960 1.296392 CAGCCGTTCAGTGGATGGA 59.704 57.895 14.46 0.00 39.21 3.41
1868 2029 6.352516 AGTATCCTCTGCTTCGAAATCATTT 58.647 36.000 0.00 0.00 0.00 2.32
1957 2118 2.851263 TCGTAGTGCTGTTGGGAAAT 57.149 45.000 0.00 0.00 0.00 2.17
1958 2119 3.965379 TCGTAGTGCTGTTGGGAAATA 57.035 42.857 0.00 0.00 0.00 1.40
1959 2120 3.592059 TCGTAGTGCTGTTGGGAAATAC 58.408 45.455 0.00 0.00 0.00 1.89
1960 2121 3.259876 TCGTAGTGCTGTTGGGAAATACT 59.740 43.478 0.00 0.00 0.00 2.12
1961 2122 3.617263 CGTAGTGCTGTTGGGAAATACTC 59.383 47.826 0.00 0.00 0.00 2.59
1962 2123 3.073274 AGTGCTGTTGGGAAATACTCC 57.927 47.619 0.00 0.00 44.54 3.85
1975 2136 7.509546 TGGGAAATACTCCTATTTGAGATGTC 58.490 38.462 0.00 0.00 44.68 3.06
1983 2144 7.170965 ACTCCTATTTGAGATGTCAACATTGT 58.829 34.615 4.50 0.00 42.60 2.71
2191 2361 2.581246 GGACCATAAGAAAAGGGGAGGT 59.419 50.000 0.00 0.00 0.00 3.85
2404 2577 5.720371 ATTCAATCGAATCAAACACCCAA 57.280 34.783 0.00 0.00 37.25 4.12
2415 2588 4.630111 TCAAACACCCAATTTTGCAGATC 58.370 39.130 0.00 0.00 33.50 2.75
2423 2596 3.367703 CCAATTTTGCAGATCCCTGTGTC 60.368 47.826 0.00 0.00 42.35 3.67
2471 2665 8.575649 TGAGTTTTCCCTATTCCTACATTTTC 57.424 34.615 0.00 0.00 0.00 2.29
2499 2696 1.940613 GCGAATCAAAGAGGCCGTATT 59.059 47.619 0.00 0.00 0.00 1.89
2509 2706 7.609056 TCAAAGAGGCCGTATTAGTTATATCC 58.391 38.462 0.00 0.00 0.00 2.59
2651 2950 5.642063 GGACGATTCAGTTCAGAAAATGGTA 59.358 40.000 0.00 0.00 31.48 3.25
2708 3007 4.252073 CAGAAGAGTCTTTGTCATGGGAG 58.748 47.826 6.88 0.00 28.78 4.30
2783 3082 1.267806 CTGCCTGGTTTAGTTGCACAG 59.732 52.381 0.00 0.00 0.00 3.66
2843 3142 5.854431 CTCAGAAAGCTAAACTTCTCACC 57.146 43.478 0.00 0.00 37.75 4.02
2891 3190 0.528684 GCGACACTCTGGACCATAGC 60.529 60.000 6.79 0.00 0.00 2.97
2893 3192 1.410517 CGACACTCTGGACCATAGCAT 59.589 52.381 6.79 0.00 0.00 3.79
2904 3203 3.008375 GGACCATAGCATGCAGGAAGATA 59.992 47.826 24.82 6.90 0.00 1.98
2920 3219 5.948162 AGGAAGATAATTCACATGCAGTTGT 59.052 36.000 0.00 0.00 0.00 3.32
2949 3248 1.951209 TCCTGTGGATACTGCTCCAA 58.049 50.000 1.51 0.00 46.66 3.53
2953 3252 1.208052 TGTGGATACTGCTCCAAGCTC 59.792 52.381 1.51 0.00 46.66 4.09
3004 3303 5.447624 TCATCGGATGAGAATAAACGCTA 57.552 39.130 16.44 0.00 33.59 4.26
3256 3555 1.992667 TGTTGCTGCGTCGAGAATTAG 59.007 47.619 0.00 0.00 0.00 1.73
3884 4196 5.149973 TCAATTTGCTGCAATTACATGGT 57.850 34.783 16.77 0.00 0.00 3.55
3977 4289 4.397420 ACTTACATGTGTGAATGAGCCAA 58.603 39.130 9.11 0.00 0.00 4.52
4469 4782 7.446013 TCGTACAAATTTCTACAACAAGGGATT 59.554 33.333 4.76 0.00 0.00 3.01
4550 4863 3.019564 GCTCAGTTATGCCCAATTCACT 58.980 45.455 0.00 0.00 0.00 3.41
4652 4965 4.044336 TCACAAATGCAACTTTGGTCAG 57.956 40.909 15.33 4.76 39.83 3.51
4755 5068 7.608761 AGTTAAACGCTTCTAATGGTTTATGGA 59.391 33.333 0.00 0.00 35.50 3.41
4956 5386 8.292444 TCTTGAATATTATTGAAACCCCTGTG 57.708 34.615 0.00 0.00 0.00 3.66
4993 5423 1.302271 CAGGAAGCAGCTGAGCACA 60.302 57.895 20.43 0.00 36.85 4.57
5005 5435 4.334118 AGCACACCAGCGGCATCA 62.334 61.111 1.45 0.00 40.15 3.07
5013 5443 1.651240 CCAGCGGCATCAGTTGGAAG 61.651 60.000 1.45 0.00 41.68 3.46
5019 5449 1.340017 GGCATCAGTTGGAAGTAGCCA 60.340 52.381 0.00 0.00 40.50 4.75
5020 5450 2.012673 GCATCAGTTGGAAGTAGCCAG 58.987 52.381 0.00 0.00 39.52 4.85
5022 5452 3.683847 GCATCAGTTGGAAGTAGCCAGAT 60.684 47.826 0.00 0.00 39.52 2.90
5072 5502 2.166254 ACAAGTGCAAGGTTTGTTCCTG 59.834 45.455 0.00 0.00 37.93 3.86
5140 5571 8.234546 TCTTTTTATGTAAATTGCTCCGTTCTC 58.765 33.333 0.00 0.00 0.00 2.87
5243 5674 5.277925 GCGGTTAAGGTAAAAGCAAACAGTA 60.278 40.000 0.00 0.00 0.00 2.74
5297 5728 4.946157 AGACTGAAATCGCTTCCAAATCAT 59.054 37.500 0.00 0.00 32.53 2.45
5392 5823 2.751806 GGAGGAAGGAATGCTTTGTCAG 59.248 50.000 0.00 0.00 0.00 3.51
5514 5945 7.527084 GGCTTTATTATTCTGCCTACTATCG 57.473 40.000 0.00 0.00 40.36 2.92
5519 5950 3.944055 ATTCTGCCTACTATCGCGATT 57.056 42.857 28.81 13.09 0.00 3.34
5630 6101 0.882484 TCTTGTCGCGTGATGGCAAA 60.882 50.000 5.77 0.00 0.00 3.68
5822 6595 2.778679 GATGACGCGCCACTTGAC 59.221 61.111 5.73 0.00 0.00 3.18
5967 6741 3.898123 GACCTCTATTCTACCATGAGGCA 59.102 47.826 7.19 0.00 45.86 4.75
6001 6776 0.750249 TGTGTCGAGTCCAGAGCAAA 59.250 50.000 0.00 0.00 0.00 3.68
6008 6783 3.069586 TCGAGTCCAGAGCAAAGAAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
6011 6786 4.723309 AGTCCAGAGCAAAGAAAGAACAT 58.277 39.130 0.00 0.00 0.00 2.71
6063 6840 2.021723 GCCTGTTGTTGTCTGGTTGGA 61.022 52.381 0.00 0.00 0.00 3.53
6094 6871 1.674962 GAGACGTGGGAATACTAGCGT 59.325 52.381 0.00 0.00 35.20 5.07
6099 6876 5.014808 ACGTGGGAATACTAGCGTTTAAT 57.985 39.130 0.00 0.00 0.00 1.40
6143 6920 0.027586 CGGCCATAACGCAAACTAGC 59.972 55.000 2.24 0.00 0.00 3.42
6144 6921 1.379527 GGCCATAACGCAAACTAGCT 58.620 50.000 0.00 0.00 0.00 3.32
6145 6922 1.064060 GGCCATAACGCAAACTAGCTG 59.936 52.381 0.00 0.00 0.00 4.24
6146 6923 1.737793 GCCATAACGCAAACTAGCTGT 59.262 47.619 0.00 0.00 0.00 4.40
6147 6924 2.223044 GCCATAACGCAAACTAGCTGTC 60.223 50.000 0.00 0.00 0.00 3.51
6148 6925 3.262420 CCATAACGCAAACTAGCTGTCT 58.738 45.455 0.00 0.00 0.00 3.41
6150 6927 1.797025 AACGCAAACTAGCTGTCTCC 58.203 50.000 0.00 0.00 0.00 3.71
6151 6928 0.679505 ACGCAAACTAGCTGTCTCCA 59.320 50.000 0.00 0.00 0.00 3.86
6152 6929 1.337260 ACGCAAACTAGCTGTCTCCAG 60.337 52.381 0.00 0.00 41.91 3.86
6153 6930 1.337260 CGCAAACTAGCTGTCTCCAGT 60.337 52.381 0.00 0.00 41.02 4.00
6179 6956 2.565391 TCTGCTGATCGTAGGTTTTCCA 59.435 45.455 0.00 0.00 43.73 3.53
6211 6988 2.903135 AGAGCTTCTCCAACAACTAGCT 59.097 45.455 0.00 0.00 41.31 3.32
6257 7034 6.127730 ACCAAAAAGTGACTTTTAGGACACTG 60.128 38.462 22.11 14.56 41.98 3.66
6334 7185 7.776969 AGATCCAAACTACTTATCACATTGCAT 59.223 33.333 0.00 0.00 0.00 3.96
6366 7217 7.437862 TCACTGCAAACTTCCAAATATTCAAAC 59.562 33.333 0.00 0.00 0.00 2.93
6375 7226 8.650490 ACTTCCAAATATTCAAACATCCAAACT 58.350 29.630 0.00 0.00 0.00 2.66
6377 7228 9.487790 TTCCAAATATTCAAACATCCAAACTTC 57.512 29.630 0.00 0.00 0.00 3.01
6383 7234 5.667539 TCAAACATCCAAACTTCCAAACA 57.332 34.783 0.00 0.00 0.00 2.83
6384 7235 5.659463 TCAAACATCCAAACTTCCAAACAG 58.341 37.500 0.00 0.00 0.00 3.16
6385 7236 5.186797 TCAAACATCCAAACTTCCAAACAGT 59.813 36.000 0.00 0.00 0.00 3.55
6386 7237 5.675684 AACATCCAAACTTCCAAACAGTT 57.324 34.783 0.00 0.00 35.94 3.16
6387 7238 5.675684 ACATCCAAACTTCCAAACAGTTT 57.324 34.783 0.00 0.00 43.80 2.66
6388 7239 6.048732 ACATCCAAACTTCCAAACAGTTTT 57.951 33.333 0.00 0.00 41.58 2.43
6389 7240 6.472016 ACATCCAAACTTCCAAACAGTTTTT 58.528 32.000 0.00 0.00 41.58 1.94
6409 7260 3.518634 TTTGTTGTTGAGGGAAACAGC 57.481 42.857 0.00 0.00 40.93 4.40
6410 7261 2.136298 TGTTGTTGAGGGAAACAGCA 57.864 45.000 2.98 2.98 45.36 4.41
6412 7263 1.338020 GTTGTTGAGGGAAACAGCAGG 59.662 52.381 0.00 0.00 40.93 4.85
6414 7265 1.239347 GTTGAGGGAAACAGCAGGAC 58.761 55.000 0.00 0.00 0.00 3.85
6416 7267 0.687354 TGAGGGAAACAGCAGGACTC 59.313 55.000 0.00 0.00 0.00 3.36
6417 7268 0.980423 GAGGGAAACAGCAGGACTCT 59.020 55.000 0.00 0.00 0.00 3.24
6418 7269 0.689623 AGGGAAACAGCAGGACTCTG 59.310 55.000 0.00 0.00 43.64 3.35
6419 7270 0.398318 GGGAAACAGCAGGACTCTGT 59.602 55.000 0.00 0.00 45.83 3.41
6423 7274 3.559024 CAGCAGGACTCTGTTGCG 58.441 61.111 0.00 0.00 43.34 4.85
6424 7275 1.301244 CAGCAGGACTCTGTTGCGT 60.301 57.895 0.00 0.00 43.34 5.24
6427 7278 1.276421 AGCAGGACTCTGTTGCGTATT 59.724 47.619 0.00 0.00 42.78 1.89
6428 7279 2.076863 GCAGGACTCTGTTGCGTATTT 58.923 47.619 0.00 0.00 42.78 1.40
6429 7280 2.484264 GCAGGACTCTGTTGCGTATTTT 59.516 45.455 0.00 0.00 42.78 1.82
6430 7281 3.058224 GCAGGACTCTGTTGCGTATTTTT 60.058 43.478 0.00 0.00 42.78 1.94
6432 7283 5.163754 GCAGGACTCTGTTGCGTATTTTTAT 60.164 40.000 0.00 0.00 42.78 1.40
6433 7284 6.622896 GCAGGACTCTGTTGCGTATTTTTATT 60.623 38.462 0.00 0.00 42.78 1.40
6434 7285 6.742718 CAGGACTCTGTTGCGTATTTTTATTG 59.257 38.462 0.00 0.00 36.30 1.90
6435 7286 6.653320 AGGACTCTGTTGCGTATTTTTATTGA 59.347 34.615 0.00 0.00 0.00 2.57
6437 7288 7.968405 GGACTCTGTTGCGTATTTTTATTGATT 59.032 33.333 0.00 0.00 0.00 2.57
6438 7289 9.341899 GACTCTGTTGCGTATTTTTATTGATTT 57.658 29.630 0.00 0.00 0.00 2.17
6439 7290 9.691362 ACTCTGTTGCGTATTTTTATTGATTTT 57.309 25.926 0.00 0.00 0.00 1.82
6469 7320 7.982761 AAACATATACAAAAGGTTCGGTACA 57.017 32.000 0.00 0.00 0.00 2.90
6470 7321 7.982761 AACATATACAAAAGGTTCGGTACAA 57.017 32.000 0.00 0.00 0.00 2.41
6471 7322 7.982761 ACATATACAAAAGGTTCGGTACAAA 57.017 32.000 0.00 0.00 0.00 2.83
6472 7323 8.036273 ACATATACAAAAGGTTCGGTACAAAG 57.964 34.615 0.00 0.00 0.00 2.77
6473 7324 7.879160 ACATATACAAAAGGTTCGGTACAAAGA 59.121 33.333 0.00 0.00 0.00 2.52
6474 7325 6.796705 ATACAAAAGGTTCGGTACAAAGAG 57.203 37.500 0.00 0.00 0.00 2.85
6475 7326 3.314357 ACAAAAGGTTCGGTACAAAGAGC 59.686 43.478 0.00 0.00 0.00 4.09
6476 7327 2.922740 AAGGTTCGGTACAAAGAGCA 57.077 45.000 0.00 0.00 0.00 4.26
6477 7328 2.922740 AGGTTCGGTACAAAGAGCAA 57.077 45.000 0.00 0.00 0.00 3.91
6478 7329 3.202829 AGGTTCGGTACAAAGAGCAAA 57.797 42.857 0.00 0.00 0.00 3.68
6479 7330 3.139077 AGGTTCGGTACAAAGAGCAAAG 58.861 45.455 0.00 0.00 0.00 2.77
6480 7331 3.135994 GGTTCGGTACAAAGAGCAAAGA 58.864 45.455 0.00 0.00 0.00 2.52
6481 7332 3.562557 GGTTCGGTACAAAGAGCAAAGAA 59.437 43.478 0.00 0.00 0.00 2.52
6482 7333 4.319549 GGTTCGGTACAAAGAGCAAAGAAG 60.320 45.833 0.00 0.00 0.00 2.85
6483 7334 4.330944 TCGGTACAAAGAGCAAAGAAGA 57.669 40.909 0.00 0.00 0.00 2.87
6484 7335 4.699637 TCGGTACAAAGAGCAAAGAAGAA 58.300 39.130 0.00 0.00 0.00 2.52
6485 7336 4.750098 TCGGTACAAAGAGCAAAGAAGAAG 59.250 41.667 0.00 0.00 0.00 2.85
6486 7337 4.750098 CGGTACAAAGAGCAAAGAAGAAGA 59.250 41.667 0.00 0.00 0.00 2.87
6487 7338 5.236478 CGGTACAAAGAGCAAAGAAGAAGAA 59.764 40.000 0.00 0.00 0.00 2.52
6488 7339 6.431278 GGTACAAAGAGCAAAGAAGAAGAAC 58.569 40.000 0.00 0.00 0.00 3.01
6489 7340 6.038271 GGTACAAAGAGCAAAGAAGAAGAACA 59.962 38.462 0.00 0.00 0.00 3.18
6490 7341 6.515272 ACAAAGAGCAAAGAAGAAGAACAA 57.485 33.333 0.00 0.00 0.00 2.83
6491 7342 7.105241 ACAAAGAGCAAAGAAGAAGAACAAT 57.895 32.000 0.00 0.00 0.00 2.71
6492 7343 8.225603 ACAAAGAGCAAAGAAGAAGAACAATA 57.774 30.769 0.00 0.00 0.00 1.90
6493 7344 8.686334 ACAAAGAGCAAAGAAGAAGAACAATAA 58.314 29.630 0.00 0.00 0.00 1.40
6494 7345 9.520204 CAAAGAGCAAAGAAGAAGAACAATAAA 57.480 29.630 0.00 0.00 0.00 1.40
6496 7347 9.521503 AAGAGCAAAGAAGAAGAACAATAAAAC 57.478 29.630 0.00 0.00 0.00 2.43
6497 7348 8.907885 AGAGCAAAGAAGAAGAACAATAAAACT 58.092 29.630 0.00 0.00 0.00 2.66
6504 7355 9.785982 AGAAGAAGAACAATAAAACTAGAAGCT 57.214 29.630 0.00 0.00 0.00 3.74
6520 7371 9.482627 AACTAGAAGCTATACAAAGATATGCAC 57.517 33.333 0.00 0.00 0.00 4.57
6521 7372 8.642432 ACTAGAAGCTATACAAAGATATGCACA 58.358 33.333 0.00 0.00 0.00 4.57
6522 7373 7.959689 AGAAGCTATACAAAGATATGCACAG 57.040 36.000 0.00 0.00 0.00 3.66
6523 7374 7.730084 AGAAGCTATACAAAGATATGCACAGA 58.270 34.615 0.00 0.00 0.00 3.41
6524 7375 8.206867 AGAAGCTATACAAAGATATGCACAGAA 58.793 33.333 0.00 0.00 0.00 3.02
6525 7376 7.959689 AGCTATACAAAGATATGCACAGAAG 57.040 36.000 0.00 0.00 0.00 2.85
6526 7377 7.730084 AGCTATACAAAGATATGCACAGAAGA 58.270 34.615 0.00 0.00 0.00 2.87
6527 7378 8.206867 AGCTATACAAAGATATGCACAGAAGAA 58.793 33.333 0.00 0.00 0.00 2.52
6530 7381 6.981762 ACAAAGATATGCACAGAAGAAGAG 57.018 37.500 0.00 0.00 0.00 2.85
6542 7393 7.931407 TGCACAGAAGAAGAGTTTAAACATAGA 59.069 33.333 20.06 0.00 0.00 1.98
6560 7414 9.561069 AAACATAGAACACTGACACTAGAAAAT 57.439 29.630 0.00 0.00 0.00 1.82
6569 7423 8.021973 ACACTGACACTAGAAAATTACTACTCG 58.978 37.037 0.00 0.00 0.00 4.18
6581 7435 2.166821 ACTACTCGTCACTCTCACGT 57.833 50.000 0.00 0.00 38.45 4.49
6583 7437 1.799403 CTACTCGTCACTCTCACGTGT 59.201 52.381 16.51 5.42 43.97 4.49
6584 7438 0.308068 ACTCGTCACTCTCACGTGTG 59.692 55.000 16.51 13.78 41.15 3.82
6599 7453 1.134788 CGTGTGAGGTTATCCCAGTCC 60.135 57.143 0.00 0.00 34.66 3.85
6615 7469 2.511600 CCATGTCGGAACCCTCGC 60.512 66.667 0.00 0.00 36.56 5.03
6648 7504 3.650647 TTCATCACTGTGAAGGCCC 57.349 52.632 15.31 0.00 33.41 5.80
6655 7511 2.530151 TGTGAAGGCCCTGGCTCT 60.530 61.111 8.29 0.72 37.50 4.09
6667 7523 0.833949 CTGGCTCTTCCTCCTTACCC 59.166 60.000 0.00 0.00 35.26 3.69
6668 7524 0.976073 TGGCTCTTCCTCCTTACCCG 60.976 60.000 0.00 0.00 35.26 5.28
6669 7525 1.144276 GCTCTTCCTCCTTACCCGC 59.856 63.158 0.00 0.00 0.00 6.13
6670 7526 1.823976 CTCTTCCTCCTTACCCGCC 59.176 63.158 0.00 0.00 0.00 6.13
6671 7527 0.688087 CTCTTCCTCCTTACCCGCCT 60.688 60.000 0.00 0.00 0.00 5.52
6675 7531 0.337428 TCCTCCTTACCCGCCTACTT 59.663 55.000 0.00 0.00 0.00 2.24
6687 7753 1.374252 CCTACTTGCGCTCACGGTT 60.374 57.895 9.73 0.00 40.57 4.44
6695 7761 1.801913 CGCTCACGGTTCCTCTTCG 60.802 63.158 0.00 0.00 34.97 3.79
6716 7828 2.959357 GCATCGCAATAGCCGCCTC 61.959 63.158 0.00 0.00 37.52 4.70
6717 7829 1.595109 CATCGCAATAGCCGCCTCA 60.595 57.895 0.00 0.00 37.52 3.86
6720 7832 2.661566 CGCAATAGCCGCCTCATCG 61.662 63.158 0.00 0.00 37.52 3.84
6751 7863 3.522731 CCCGCTCCTCGAGGACAG 61.523 72.222 30.49 24.04 39.78 3.51
6752 7864 2.752238 CCGCTCCTCGAGGACAGT 60.752 66.667 30.49 0.00 39.78 3.55
6753 7865 1.451567 CCGCTCCTCGAGGACAGTA 60.452 63.158 30.49 9.99 39.78 2.74
6755 7867 0.745128 CGCTCCTCGAGGACAGTACT 60.745 60.000 30.49 0.00 39.78 2.73
6756 7868 1.472904 CGCTCCTCGAGGACAGTACTA 60.473 57.143 30.49 7.59 39.78 1.82
6767 7879 5.442391 GAGGACAGTACTAGTCTCCATCTT 58.558 45.833 18.62 0.00 36.29 2.40
6768 7880 5.442391 AGGACAGTACTAGTCTCCATCTTC 58.558 45.833 18.62 6.02 36.29 2.87
6769 7881 4.273969 GGACAGTACTAGTCTCCATCTTCG 59.726 50.000 18.62 0.00 36.29 3.79
6770 7882 3.628487 ACAGTACTAGTCTCCATCTTCGC 59.372 47.826 0.00 0.00 0.00 4.70
6772 7884 2.145397 ACTAGTCTCCATCTTCGCCA 57.855 50.000 0.00 0.00 0.00 5.69
6773 7885 2.457598 ACTAGTCTCCATCTTCGCCAA 58.542 47.619 0.00 0.00 0.00 4.52
6775 7887 0.107945 AGTCTCCATCTTCGCCAAGC 60.108 55.000 0.00 0.00 0.00 4.01
6776 7888 0.391661 GTCTCCATCTTCGCCAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
6777 7889 0.107993 TCTCCATCTTCGCCAAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
6779 7891 1.078214 CCATCTTCGCCAAGCAGGA 60.078 57.895 0.00 0.00 41.22 3.86
6780 7892 0.465097 CCATCTTCGCCAAGCAGGAT 60.465 55.000 0.00 0.00 41.22 3.24
6781 7893 1.202687 CCATCTTCGCCAAGCAGGATA 60.203 52.381 0.00 0.00 41.22 2.59
6782 7894 1.869767 CATCTTCGCCAAGCAGGATAC 59.130 52.381 0.00 0.00 41.22 2.24
6783 7895 0.901827 TCTTCGCCAAGCAGGATACA 59.098 50.000 0.00 0.00 41.22 2.29
6786 7898 2.192664 TCGCCAAGCAGGATACAAAA 57.807 45.000 0.00 0.00 41.22 2.44
6787 7899 2.722094 TCGCCAAGCAGGATACAAAAT 58.278 42.857 0.00 0.00 41.22 1.82
6789 7901 2.480073 CGCCAAGCAGGATACAAAATGG 60.480 50.000 0.00 0.00 41.22 3.16
6790 7902 2.497273 GCCAAGCAGGATACAAAATGGT 59.503 45.455 0.00 0.00 41.22 3.55
6791 7903 3.429410 GCCAAGCAGGATACAAAATGGTC 60.429 47.826 0.00 0.00 41.22 4.02
6792 7904 3.763360 CCAAGCAGGATACAAAATGGTCA 59.237 43.478 0.00 0.00 41.22 4.02
6793 7905 4.220382 CCAAGCAGGATACAAAATGGTCAA 59.780 41.667 0.00 0.00 41.22 3.18
6795 7907 6.400568 CAAGCAGGATACAAAATGGTCAAAT 58.599 36.000 0.00 0.00 41.41 2.32
6796 7908 5.969423 AGCAGGATACAAAATGGTCAAATG 58.031 37.500 0.00 0.00 41.41 2.32
6811 7923 2.837031 AAATGGCGGCCCGATGAACT 62.837 55.000 17.97 0.00 0.00 3.01
6814 7926 4.467084 GCGGCCCGATGAACTCCA 62.467 66.667 7.68 0.00 0.00 3.86
6820 7932 0.541392 CCCGATGAACTCCACATCCA 59.459 55.000 0.00 0.00 40.40 3.41
6833 7963 1.447838 CATCCACCCGTGTTCTCCG 60.448 63.158 0.00 0.00 0.00 4.63
6836 7966 4.308458 CACCCGTGTTCTCCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
6841 7971 1.874019 CGTGTTCTCCGCCATCTCG 60.874 63.158 0.00 0.00 0.00 4.04
6848 7978 1.949847 CTCCGCCATCTCGAAGGTGT 61.950 60.000 9.91 0.00 33.59 4.16
6861 7991 3.587797 GAAGGTGTCGAGTCAATACCA 57.412 47.619 0.00 0.00 33.88 3.25
6877 8007 2.390599 CCATCGGTCGTTGCACTGG 61.391 63.158 0.00 0.00 0.00 4.00
6896 8026 2.897326 TGGAACTCGACTGAAAGGATCA 59.103 45.455 0.00 0.00 39.30 2.92
6899 8029 3.601443 ACTCGACTGAAAGGATCAAGG 57.399 47.619 0.00 0.00 39.30 3.61
6900 8030 3.165875 ACTCGACTGAAAGGATCAAGGA 58.834 45.455 0.00 0.00 39.30 3.36
6902 8032 2.233922 TCGACTGAAAGGATCAAGGACC 59.766 50.000 0.00 0.00 39.30 4.46
6903 8033 2.234908 CGACTGAAAGGATCAAGGACCT 59.765 50.000 0.00 0.00 39.30 3.85
6934 8236 6.106648 GGGGGTGAATAGGTATACTTACAC 57.893 45.833 2.25 5.22 0.00 2.90
6935 8237 5.279156 GGGGGTGAATAGGTATACTTACACG 60.279 48.000 2.25 0.00 0.00 4.49
6995 8297 9.432982 TTGAAATATGAAAGTGGGCCTAATAAT 57.567 29.630 4.53 0.00 0.00 1.28
7002 8304 5.955961 AAGTGGGCCTAATAATTGCAAAT 57.044 34.783 1.71 0.00 0.00 2.32
7003 8305 5.280654 AGTGGGCCTAATAATTGCAAATG 57.719 39.130 1.71 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 191 5.961396 AGTTGACTTACACATAGTCGTCT 57.039 39.130 0.00 0.00 43.90 4.18
215 223 6.035843 ACGGCAAAAATATATTGACTTGCAG 58.964 36.000 25.86 24.62 40.66 4.41
244 252 2.452600 TCCTGGCCATTGGATAAACC 57.547 50.000 5.51 0.00 39.54 3.27
245 253 3.319122 GTGATCCTGGCCATTGGATAAAC 59.681 47.826 23.05 19.66 42.56 2.01
248 256 1.072173 CGTGATCCTGGCCATTGGATA 59.928 52.381 23.05 11.23 42.56 2.59
272 280 7.390996 GGTACGAGAGGAAGAATATGATAGTCA 59.609 40.741 2.59 0.00 0.00 3.41
273 281 7.754625 GGTACGAGAGGAAGAATATGATAGTC 58.245 42.308 0.00 0.00 0.00 2.59
295 303 2.120940 TTGGGCTGGGAGACGGTA 59.879 61.111 0.00 0.00 0.00 4.02
300 308 1.162329 TTAGGGTTGGGCTGGGAGA 59.838 57.895 0.00 0.00 0.00 3.71
321 329 0.262580 CATGGATGGTGGGGGTTGAT 59.737 55.000 0.00 0.00 0.00 2.57
650 658 0.240945 AGTGAATTTTGGGAAGCGCG 59.759 50.000 0.00 0.00 0.00 6.86
658 666 4.755123 AGTGGTAAGTCGAGTGAATTTTGG 59.245 41.667 0.00 0.00 33.81 3.28
672 680 1.595357 GCGTGGGCTAGTGGTAAGT 59.405 57.895 0.00 0.00 35.83 2.24
712 720 7.284919 AGTTCTATGGTTTTAGTTGGGTTTG 57.715 36.000 0.00 0.00 0.00 2.93
748 756 3.181504 CGGGTTCGTCTGTTTTCTGTTTT 60.182 43.478 0.00 0.00 0.00 2.43
752 760 1.860676 TCGGGTTCGTCTGTTTTCTG 58.139 50.000 0.00 0.00 37.69 3.02
754 762 2.867975 TCTTTCGGGTTCGTCTGTTTTC 59.132 45.455 0.00 0.00 37.69 2.29
770 780 2.726066 CGAGCGCACCTGATTTTCTTTC 60.726 50.000 11.47 0.00 0.00 2.62
798 813 3.308401 CAATTAGGGGCAGGCCTATTTT 58.692 45.455 13.81 0.00 36.10 1.82
894 909 3.382832 AGAGGTCGTGGCTTCGGG 61.383 66.667 3.35 0.00 0.00 5.14
1001 1020 2.435938 GGCAGTGGCGAATCGGAA 60.436 61.111 4.35 0.00 42.47 4.30
1015 1034 4.418328 ATGTTTAGGGCGGCGGCA 62.418 61.111 34.25 13.08 42.47 5.69
1113 1258 1.361993 CGGCAGGAGATCGAGAAGG 59.638 63.158 0.00 0.00 0.00 3.46
1134 1279 2.067197 GGTACAACAGCCACCCTCT 58.933 57.895 0.00 0.00 0.00 3.69
1290 1436 4.113354 CGTCTCCACCTGAAAATACTAGC 58.887 47.826 0.00 0.00 0.00 3.42
1297 1443 1.048601 AGCTCGTCTCCACCTGAAAA 58.951 50.000 0.00 0.00 0.00 2.29
1313 1459 1.375326 GGAACGGGAACTCCAAGCT 59.625 57.895 0.00 0.00 37.91 3.74
1358 1504 6.475596 TTATTTGGAACGGGGTAAACAAAA 57.524 33.333 0.00 0.00 32.44 2.44
1365 1511 5.192176 GGTACAATTATTTGGAACGGGGTA 58.808 41.667 0.00 0.00 37.15 3.69
1374 1520 9.150348 GATTGTTTCTTGGGTACAATTATTTGG 57.850 33.333 0.00 0.00 41.24 3.28
1380 1526 4.219725 CCGGATTGTTTCTTGGGTACAATT 59.780 41.667 0.00 0.00 41.24 2.32
1384 1530 2.089201 CCCGGATTGTTTCTTGGGTAC 58.911 52.381 0.73 0.00 36.08 3.34
1401 1547 0.178068 ATCCCACGAATTGAGACCCG 59.822 55.000 0.00 0.00 0.00 5.28
1532 1688 1.308998 AAACCAGCAAAGACAGACGG 58.691 50.000 0.00 0.00 0.00 4.79
1663 1820 3.823873 ACACCAAAAGTCACACTGTCAAA 59.176 39.130 0.00 0.00 0.00 2.69
1803 1960 1.320344 TAGGGCGAATCTGAGTGCGT 61.320 55.000 0.00 0.00 0.00 5.24
1805 1962 0.175760 TGTAGGGCGAATCTGAGTGC 59.824 55.000 0.00 0.00 0.00 4.40
1868 2029 1.021202 CAACCAAAGGTGAAGCGACA 58.979 50.000 0.00 0.00 35.34 4.35
1957 2118 8.321353 ACAATGTTGACATCTCAAATAGGAGTA 58.679 33.333 0.00 0.00 38.17 2.59
1958 2119 7.170965 ACAATGTTGACATCTCAAATAGGAGT 58.829 34.615 0.00 0.00 38.17 3.85
1959 2120 7.621428 ACAATGTTGACATCTCAAATAGGAG 57.379 36.000 0.00 0.00 38.17 3.69
1960 2121 9.112725 CATACAATGTTGACATCTCAAATAGGA 57.887 33.333 0.00 0.00 38.17 2.94
1961 2122 9.112725 TCATACAATGTTGACATCTCAAATAGG 57.887 33.333 0.00 0.00 38.17 2.57
1962 2123 9.926751 GTCATACAATGTTGACATCTCAAATAG 57.073 33.333 17.44 0.00 41.48 1.73
1975 2136 7.642586 CAGCATCAACTATGTCATACAATGTTG 59.357 37.037 12.99 12.99 41.84 3.33
1983 2144 4.101430 TCAGGCAGCATCAACTATGTCATA 59.899 41.667 0.00 0.00 37.93 2.15
2226 2396 9.772973 GTTTTAGTGGATGGTAAAATTCCTTTT 57.227 29.630 0.00 0.00 38.17 2.27
2262 2432 4.157656 GCCTTGTTTGTGCATAGGAATGTA 59.842 41.667 0.00 0.00 35.38 2.29
2326 2499 9.646427 GGTCAAATTAAGGTTAAAACATATGCA 57.354 29.630 1.58 0.00 0.00 3.96
2404 2577 3.446442 AGACACAGGGATCTGCAAAAT 57.554 42.857 0.00 0.00 44.59 1.82
2471 2665 3.733077 GCCTCTTTGATTCGCAGGATTTG 60.733 47.826 0.00 0.00 0.00 2.32
2509 2706 4.926238 CAGAGTGGTAGCTACAAAACTCTG 59.074 45.833 37.09 37.09 44.56 3.35
2588 2887 7.876896 AAAGAGAAATTAGAGACTCACGAAC 57.123 36.000 5.02 0.00 32.59 3.95
2651 2950 4.753516 TGATACCGAACCATGATCAAGT 57.246 40.909 0.00 0.00 0.00 3.16
2708 3007 7.639039 TGTTGTGTTCAAATACTGATCTGTTC 58.361 34.615 10.76 0.00 35.20 3.18
2843 3142 2.095059 CCTTTCTTCCAATGTGGCTTCG 60.095 50.000 0.00 0.00 37.47 3.79
2891 3190 5.220381 GCATGTGAATTATCTTCCTGCATG 58.780 41.667 0.00 0.00 35.62 4.06
2893 3192 4.271661 TGCATGTGAATTATCTTCCTGCA 58.728 39.130 0.00 0.00 33.56 4.41
2904 3203 2.030007 CGGGAACAACTGCATGTGAATT 60.030 45.455 3.91 0.00 32.81 2.17
2920 3219 1.879575 ATCCACAGGATCTTCGGGAA 58.120 50.000 0.00 0.00 38.09 3.97
2949 3248 1.701847 AGATGGTTGACAACTGGAGCT 59.298 47.619 17.52 7.68 30.14 4.09
2953 3252 3.338249 CCAGTAGATGGTTGACAACTGG 58.662 50.000 17.52 11.40 44.68 4.00
3004 3303 0.328450 TCCTAGCCCATGGGGTTCAT 60.328 55.000 38.98 11.54 46.51 2.57
3695 4007 3.954258 ACCAACTGCAAAAACTAGCTCTT 59.046 39.130 0.00 0.00 0.00 2.85
3847 4159 7.491372 GCAGCAAATTGATCATCCCAATATATG 59.509 37.037 0.00 0.00 33.51 1.78
3848 4160 7.179516 TGCAGCAAATTGATCATCCCAATATAT 59.820 33.333 0.00 0.00 33.51 0.86
3884 4196 2.564947 ACAAAGCCAAAACTCACACCAA 59.435 40.909 0.00 0.00 0.00 3.67
3959 4271 3.827876 TGATTTGGCTCATTCACACATGT 59.172 39.130 0.00 0.00 0.00 3.21
3977 4289 6.841755 AGCTAGTACTATCCTGGAAAGTGATT 59.158 38.462 2.33 0.00 0.00 2.57
4469 4782 3.141398 GAGGCAACATGAGAAACAGACA 58.859 45.455 0.00 0.00 41.41 3.41
4550 4863 6.311055 GCAAGGGTTTTGCATTATTTTGAA 57.689 33.333 6.98 0.00 44.34 2.69
4652 4965 7.986085 ATTATGGTCCATATGTAGAAGCAAC 57.014 36.000 12.50 0.00 0.00 4.17
4951 5381 3.996150 ATCAGTTCAAACAAGCACAGG 57.004 42.857 0.00 0.00 0.00 4.00
4956 5386 5.591099 TCCTGAAAATCAGTTCAAACAAGC 58.409 37.500 6.62 0.00 42.80 4.01
4993 5423 2.360350 CCAACTGATGCCGCTGGT 60.360 61.111 0.00 0.00 0.00 4.00
5005 5435 4.407296 CCTCTAATCTGGCTACTTCCAACT 59.593 45.833 0.00 0.00 35.36 3.16
5013 5443 5.420421 TGCATAGATCCTCTAATCTGGCTAC 59.580 44.000 11.20 0.00 37.83 3.58
5019 5449 8.916062 CAGATATGTGCATAGATCCTCTAATCT 58.084 37.037 13.67 0.00 39.35 2.40
5020 5450 7.652909 GCAGATATGTGCATAGATCCTCTAATC 59.347 40.741 19.27 0.00 43.41 1.75
5022 5452 6.871844 GCAGATATGTGCATAGATCCTCTAA 58.128 40.000 19.27 0.00 43.41 2.10
5072 5502 9.533253 CCAAATTTATAAATCATTCCACACTCC 57.467 33.333 11.08 0.00 0.00 3.85
5140 5571 1.463831 CTGCTGCTACTTCTGCACAAG 59.536 52.381 0.00 0.00 36.27 3.16
5243 5674 1.062428 TCCTACGAATCATCCCAGGGT 60.062 52.381 5.01 0.00 0.00 4.34
5392 5823 3.490526 TCGTTGCCGTTTACAGTAACTTC 59.509 43.478 0.00 0.00 35.01 3.01
5514 5945 5.778825 CACGATGAATTTATACGACAATCGC 59.221 40.000 0.00 0.00 45.12 4.58
5570 6041 4.035441 GTGCACGAACCAACCTTTTAGTAA 59.965 41.667 0.00 0.00 0.00 2.24
5571 6042 3.560896 GTGCACGAACCAACCTTTTAGTA 59.439 43.478 0.00 0.00 0.00 1.82
5572 6043 2.356695 GTGCACGAACCAACCTTTTAGT 59.643 45.455 0.00 0.00 0.00 2.24
5573 6044 2.356382 TGTGCACGAACCAACCTTTTAG 59.644 45.455 13.13 0.00 0.00 1.85
5574 6045 2.097791 GTGTGCACGAACCAACCTTTTA 59.902 45.455 13.13 0.00 0.00 1.52
5575 6046 1.135228 GTGTGCACGAACCAACCTTTT 60.135 47.619 13.13 0.00 0.00 2.27
5614 6085 1.573932 CTTTTGCCATCACGCGACA 59.426 52.632 15.93 0.00 0.00 4.35
5630 6101 1.764571 TACACGCCAGGTTGCTCCTT 61.765 55.000 0.00 0.00 45.67 3.36
5762 6535 6.127758 TGTCTGCACAGTTAACAAAGAAACAT 60.128 34.615 8.61 0.00 0.00 2.71
5822 6595 1.059994 GCGCATCTCAAACTGCTCG 59.940 57.895 0.30 0.00 36.23 5.03
5967 6741 9.862371 GGACTCGACACAAGAATTATATATCAT 57.138 33.333 0.00 0.00 0.00 2.45
5976 6750 3.862642 GCTCTGGACTCGACACAAGAATT 60.863 47.826 0.00 0.00 0.00 2.17
5992 6766 3.822735 TCCATGTTCTTTCTTTGCTCTGG 59.177 43.478 0.00 0.00 0.00 3.86
6001 6776 2.165998 GCTGCCTTCCATGTTCTTTCT 58.834 47.619 0.00 0.00 0.00 2.52
6008 6783 2.749044 CAGCGCTGCCTTCCATGT 60.749 61.111 26.68 0.00 0.00 3.21
6011 6786 2.203337 AAACAGCGCTGCCTTCCA 60.203 55.556 36.28 0.00 0.00 3.53
6063 6840 0.039074 CCACGTCTCGCTTTCACTCT 60.039 55.000 0.00 0.00 0.00 3.24
6144 6921 0.760567 AGCAGACACCACTGGAGACA 60.761 55.000 0.71 0.00 38.22 3.41
6145 6922 0.320247 CAGCAGACACCACTGGAGAC 60.320 60.000 0.71 0.00 38.22 3.36
6146 6923 0.469892 TCAGCAGACACCACTGGAGA 60.470 55.000 0.71 0.00 38.22 3.71
6147 6924 0.612229 ATCAGCAGACACCACTGGAG 59.388 55.000 0.71 0.00 38.22 3.86
6148 6925 0.610174 GATCAGCAGACACCACTGGA 59.390 55.000 0.71 0.00 38.22 3.86
6150 6927 0.037882 ACGATCAGCAGACACCACTG 60.038 55.000 0.00 0.00 40.43 3.66
6151 6928 1.474478 CTACGATCAGCAGACACCACT 59.526 52.381 0.00 0.00 0.00 4.00
6152 6929 1.469940 CCTACGATCAGCAGACACCAC 60.470 57.143 0.00 0.00 0.00 4.16
6153 6930 0.817654 CCTACGATCAGCAGACACCA 59.182 55.000 0.00 0.00 0.00 4.17
6179 6956 3.326006 TGGAGAAGCTCTCACAAACAGAT 59.674 43.478 13.06 0.00 45.12 2.90
6222 6999 4.039124 AGTCACTTTTTGGTGCCCTAAATG 59.961 41.667 10.16 10.16 37.16 2.32
6257 7034 6.703165 ACAATTGCTGGAGAAGAACAATTTTC 59.297 34.615 5.05 0.00 38.52 2.29
6294 7077 9.654663 GTAGTTTGGATCTTTTAGTATGTCTGT 57.345 33.333 0.00 0.00 0.00 3.41
6309 7096 7.320443 TGCAATGTGATAAGTAGTTTGGATC 57.680 36.000 0.00 0.00 0.00 3.36
6334 7185 4.350368 TGGAAGTTTGCAGTGATGAGTA 57.650 40.909 0.00 0.00 0.00 2.59
6366 7217 6.983474 AAAAACTGTTTGGAAGTTTGGATG 57.017 33.333 6.53 0.00 44.93 3.51
6387 7238 4.249661 GCTGTTTCCCTCAACAACAAAAA 58.750 39.130 0.00 0.00 36.22 1.94
6388 7239 3.259374 TGCTGTTTCCCTCAACAACAAAA 59.741 39.130 0.00 0.00 36.22 2.44
6389 7240 2.828520 TGCTGTTTCCCTCAACAACAAA 59.171 40.909 0.00 0.00 36.22 2.83
6392 7243 1.338020 CCTGCTGTTTCCCTCAACAAC 59.662 52.381 0.00 0.00 36.22 3.32
6393 7244 1.214175 TCCTGCTGTTTCCCTCAACAA 59.786 47.619 0.00 0.00 36.22 2.83
6394 7245 0.843309 TCCTGCTGTTTCCCTCAACA 59.157 50.000 0.00 0.00 35.33 3.33
6395 7246 1.202818 AGTCCTGCTGTTTCCCTCAAC 60.203 52.381 0.00 0.00 0.00 3.18
6396 7247 1.072331 GAGTCCTGCTGTTTCCCTCAA 59.928 52.381 0.00 0.00 0.00 3.02
6397 7248 0.687354 GAGTCCTGCTGTTTCCCTCA 59.313 55.000 0.00 0.00 0.00 3.86
6398 7249 0.980423 AGAGTCCTGCTGTTTCCCTC 59.020 55.000 0.00 0.00 0.00 4.30
6406 7257 0.038251 TACGCAACAGAGTCCTGCTG 60.038 55.000 7.60 0.00 44.16 4.41
6408 7259 1.726853 AATACGCAACAGAGTCCTGC 58.273 50.000 0.00 0.44 44.16 4.85
6409 7260 4.749245 AAAAATACGCAACAGAGTCCTG 57.251 40.909 0.00 0.00 45.76 3.86
6410 7261 6.653320 TCAATAAAAATACGCAACAGAGTCCT 59.347 34.615 0.00 0.00 0.00 3.85
6412 7263 8.895932 AATCAATAAAAATACGCAACAGAGTC 57.104 30.769 0.00 0.00 0.00 3.36
6443 7294 8.848182 TGTACCGAACCTTTTGTATATGTTTTT 58.152 29.630 0.00 0.00 0.00 1.94
6444 7295 8.393671 TGTACCGAACCTTTTGTATATGTTTT 57.606 30.769 0.00 0.00 0.00 2.43
6445 7296 7.982761 TGTACCGAACCTTTTGTATATGTTT 57.017 32.000 0.00 0.00 0.00 2.83
6446 7297 7.982761 TTGTACCGAACCTTTTGTATATGTT 57.017 32.000 0.00 0.00 0.00 2.71
6447 7298 7.879160 TCTTTGTACCGAACCTTTTGTATATGT 59.121 33.333 0.00 0.00 0.00 2.29
6448 7299 8.259049 TCTTTGTACCGAACCTTTTGTATATG 57.741 34.615 0.00 0.00 0.00 1.78
6449 7300 7.065443 GCTCTTTGTACCGAACCTTTTGTATAT 59.935 37.037 0.00 0.00 0.00 0.86
6450 7301 6.369615 GCTCTTTGTACCGAACCTTTTGTATA 59.630 38.462 0.00 0.00 0.00 1.47
6451 7302 5.180680 GCTCTTTGTACCGAACCTTTTGTAT 59.819 40.000 0.00 0.00 0.00 2.29
6452 7303 4.512571 GCTCTTTGTACCGAACCTTTTGTA 59.487 41.667 0.00 0.00 0.00 2.41
6453 7304 3.314357 GCTCTTTGTACCGAACCTTTTGT 59.686 43.478 0.00 0.00 0.00 2.83
6454 7305 3.314080 TGCTCTTTGTACCGAACCTTTTG 59.686 43.478 0.00 0.00 0.00 2.44
6455 7306 3.547746 TGCTCTTTGTACCGAACCTTTT 58.452 40.909 0.00 0.00 0.00 2.27
6456 7307 3.202829 TGCTCTTTGTACCGAACCTTT 57.797 42.857 0.00 0.00 0.00 3.11
6457 7308 2.922740 TGCTCTTTGTACCGAACCTT 57.077 45.000 0.00 0.00 0.00 3.50
6458 7309 2.922740 TTGCTCTTTGTACCGAACCT 57.077 45.000 0.00 0.00 0.00 3.50
6459 7310 3.135994 TCTTTGCTCTTTGTACCGAACC 58.864 45.455 0.00 0.00 0.00 3.62
6460 7311 4.510340 TCTTCTTTGCTCTTTGTACCGAAC 59.490 41.667 0.00 0.00 0.00 3.95
6461 7312 4.699637 TCTTCTTTGCTCTTTGTACCGAA 58.300 39.130 0.00 0.00 0.00 4.30
6462 7313 4.330944 TCTTCTTTGCTCTTTGTACCGA 57.669 40.909 0.00 0.00 0.00 4.69
6463 7314 4.750098 TCTTCTTCTTTGCTCTTTGTACCG 59.250 41.667 0.00 0.00 0.00 4.02
6464 7315 6.038271 TGTTCTTCTTCTTTGCTCTTTGTACC 59.962 38.462 0.00 0.00 0.00 3.34
6465 7316 7.016361 TGTTCTTCTTCTTTGCTCTTTGTAC 57.984 36.000 0.00 0.00 0.00 2.90
6466 7317 7.624360 TTGTTCTTCTTCTTTGCTCTTTGTA 57.376 32.000 0.00 0.00 0.00 2.41
6467 7318 6.515272 TTGTTCTTCTTCTTTGCTCTTTGT 57.485 33.333 0.00 0.00 0.00 2.83
6468 7319 9.520204 TTTATTGTTCTTCTTCTTTGCTCTTTG 57.480 29.630 0.00 0.00 0.00 2.77
6470 7321 9.521503 GTTTTATTGTTCTTCTTCTTTGCTCTT 57.478 29.630 0.00 0.00 0.00 2.85
6471 7322 8.907885 AGTTTTATTGTTCTTCTTCTTTGCTCT 58.092 29.630 0.00 0.00 0.00 4.09
6478 7329 9.785982 AGCTTCTAGTTTTATTGTTCTTCTTCT 57.214 29.630 0.00 0.00 0.00 2.85
6494 7345 9.482627 GTGCATATCTTTGTATAGCTTCTAGTT 57.517 33.333 0.00 0.00 0.00 2.24
6495 7346 8.642432 TGTGCATATCTTTGTATAGCTTCTAGT 58.358 33.333 0.00 0.00 0.00 2.57
6496 7347 9.138062 CTGTGCATATCTTTGTATAGCTTCTAG 57.862 37.037 0.00 0.00 0.00 2.43
6497 7348 8.860088 TCTGTGCATATCTTTGTATAGCTTCTA 58.140 33.333 0.00 0.00 0.00 2.10
6498 7349 7.730084 TCTGTGCATATCTTTGTATAGCTTCT 58.270 34.615 0.00 0.00 0.00 2.85
6499 7350 7.953158 TCTGTGCATATCTTTGTATAGCTTC 57.047 36.000 0.00 0.00 0.00 3.86
6500 7351 8.206867 TCTTCTGTGCATATCTTTGTATAGCTT 58.793 33.333 0.00 0.00 0.00 3.74
6501 7352 7.730084 TCTTCTGTGCATATCTTTGTATAGCT 58.270 34.615 0.00 0.00 0.00 3.32
6502 7353 7.953158 TCTTCTGTGCATATCTTTGTATAGC 57.047 36.000 0.00 0.00 0.00 2.97
6503 7354 9.755804 TCTTCTTCTGTGCATATCTTTGTATAG 57.244 33.333 0.00 0.00 0.00 1.31
6504 7355 9.755804 CTCTTCTTCTGTGCATATCTTTGTATA 57.244 33.333 0.00 0.00 0.00 1.47
6505 7356 8.263640 ACTCTTCTTCTGTGCATATCTTTGTAT 58.736 33.333 0.00 0.00 0.00 2.29
6506 7357 7.615403 ACTCTTCTTCTGTGCATATCTTTGTA 58.385 34.615 0.00 0.00 0.00 2.41
6507 7358 6.471146 ACTCTTCTTCTGTGCATATCTTTGT 58.529 36.000 0.00 0.00 0.00 2.83
6508 7359 6.981762 ACTCTTCTTCTGTGCATATCTTTG 57.018 37.500 0.00 0.00 0.00 2.77
6509 7360 7.992754 AAACTCTTCTTCTGTGCATATCTTT 57.007 32.000 0.00 0.00 0.00 2.52
6510 7361 9.507329 TTTAAACTCTTCTTCTGTGCATATCTT 57.493 29.630 0.00 0.00 0.00 2.40
6511 7362 8.940952 GTTTAAACTCTTCTTCTGTGCATATCT 58.059 33.333 11.18 0.00 0.00 1.98
6512 7363 8.721478 TGTTTAAACTCTTCTTCTGTGCATATC 58.279 33.333 18.72 0.00 0.00 1.63
6513 7364 8.621532 TGTTTAAACTCTTCTTCTGTGCATAT 57.378 30.769 18.72 0.00 0.00 1.78
6514 7365 8.621532 ATGTTTAAACTCTTCTTCTGTGCATA 57.378 30.769 18.72 0.00 0.00 3.14
6515 7366 6.942532 TGTTTAAACTCTTCTTCTGTGCAT 57.057 33.333 18.72 0.00 0.00 3.96
6516 7367 6.942532 ATGTTTAAACTCTTCTTCTGTGCA 57.057 33.333 18.72 0.00 0.00 4.57
6517 7368 8.311650 TCTATGTTTAAACTCTTCTTCTGTGC 57.688 34.615 18.72 0.00 0.00 4.57
6519 7370 9.832445 TGTTCTATGTTTAAACTCTTCTTCTGT 57.168 29.630 18.72 0.00 0.00 3.41
6523 7374 9.832445 TCAGTGTTCTATGTTTAAACTCTTCTT 57.168 29.630 18.72 1.01 0.00 2.52
6524 7375 9.262358 GTCAGTGTTCTATGTTTAAACTCTTCT 57.738 33.333 18.72 4.79 0.00 2.85
6525 7376 9.042008 TGTCAGTGTTCTATGTTTAAACTCTTC 57.958 33.333 18.72 6.04 0.00 2.87
6526 7377 8.827677 GTGTCAGTGTTCTATGTTTAAACTCTT 58.172 33.333 18.72 7.00 0.00 2.85
6527 7378 8.204836 AGTGTCAGTGTTCTATGTTTAAACTCT 58.795 33.333 18.72 9.11 0.00 3.24
6530 7381 9.472361 TCTAGTGTCAGTGTTCTATGTTTAAAC 57.528 33.333 11.54 11.54 0.00 2.01
6542 7393 9.694137 GAGTAGTAATTTTCTAGTGTCAGTGTT 57.306 33.333 0.00 0.00 0.00 3.32
6544 7395 8.021973 ACGAGTAGTAATTTTCTAGTGTCAGTG 58.978 37.037 0.00 0.00 0.00 3.66
6548 7399 8.235905 AGTGACGAGTAGTAATTTTCTAGTGTC 58.764 37.037 0.00 5.08 0.00 3.67
6557 7411 5.180868 ACGTGAGAGTGACGAGTAGTAATTT 59.819 40.000 0.00 0.00 39.21 1.82
6560 7414 3.431233 CACGTGAGAGTGACGAGTAGTAA 59.569 47.826 10.90 0.00 44.43 2.24
6565 7419 2.704108 ACACGTGAGAGTGACGAGT 58.296 52.632 25.01 0.00 44.43 4.18
6581 7435 2.335681 TGGACTGGGATAACCTCACA 57.664 50.000 0.00 0.00 41.11 3.58
6583 7437 2.771943 GACATGGACTGGGATAACCTCA 59.228 50.000 0.00 0.00 41.11 3.86
6584 7438 2.224066 CGACATGGACTGGGATAACCTC 60.224 54.545 0.00 0.00 41.11 3.85
6599 7453 2.511600 GGCGAGGGTTCCGACATG 60.512 66.667 0.00 0.00 34.67 3.21
6648 7504 0.833949 GGGTAAGGAGGAAGAGCCAG 59.166 60.000 0.00 0.00 40.02 4.85
6655 7511 0.337428 AGTAGGCGGGTAAGGAGGAA 59.663 55.000 0.00 0.00 0.00 3.36
6668 7524 3.188786 CCGTGAGCGCAAGTAGGC 61.189 66.667 11.47 0.00 41.68 3.93
6669 7525 1.352156 GAACCGTGAGCGCAAGTAGG 61.352 60.000 11.47 8.86 41.68 3.18
6670 7526 1.352156 GGAACCGTGAGCGCAAGTAG 61.352 60.000 11.47 0.00 41.68 2.57
6671 7527 1.373748 GGAACCGTGAGCGCAAGTA 60.374 57.895 11.47 0.00 41.68 2.24
6675 7531 2.765250 GAAGAGGAACCGTGAGCGCA 62.765 60.000 11.47 0.00 36.67 6.09
6695 7761 2.959357 GCGGCTATTGCGATGCCTC 61.959 63.158 19.14 11.60 44.09 4.70
6698 7764 2.959357 GAGGCGGCTATTGCGATGC 61.959 63.158 13.24 0.00 40.82 3.91
6699 7765 0.952497 ATGAGGCGGCTATTGCGATG 60.952 55.000 13.24 0.00 40.82 3.84
6700 7766 0.671781 GATGAGGCGGCTATTGCGAT 60.672 55.000 13.24 0.00 40.82 4.58
6701 7767 1.300931 GATGAGGCGGCTATTGCGA 60.301 57.895 13.24 0.00 40.82 5.10
6702 7768 2.661566 CGATGAGGCGGCTATTGCG 61.662 63.158 13.24 10.05 40.82 4.85
6703 7769 2.959357 GCGATGAGGCGGCTATTGC 61.959 63.158 13.24 16.59 38.76 3.56
6704 7770 1.287730 GAGCGATGAGGCGGCTATTG 61.288 60.000 13.24 10.90 37.10 1.90
6705 7771 1.005630 GAGCGATGAGGCGGCTATT 60.006 57.895 13.24 1.19 37.10 1.73
6706 7772 1.872197 GAGAGCGATGAGGCGGCTAT 61.872 60.000 13.24 6.04 37.10 2.97
6707 7773 2.519541 AGAGCGATGAGGCGGCTA 60.520 61.111 13.24 0.38 37.10 3.93
6708 7774 3.910490 GAGAGCGATGAGGCGGCT 61.910 66.667 13.09 13.09 40.29 5.52
6716 7828 0.605589 GGATACCTGGGAGAGCGATG 59.394 60.000 0.00 0.00 0.00 3.84
6717 7829 3.059287 GGATACCTGGGAGAGCGAT 57.941 57.895 0.00 0.00 0.00 4.58
6751 7863 2.950309 TGGCGAAGATGGAGACTAGTAC 59.050 50.000 0.00 0.00 0.00 2.73
6752 7864 3.292492 TGGCGAAGATGGAGACTAGTA 57.708 47.619 0.00 0.00 0.00 1.82
6753 7865 2.145397 TGGCGAAGATGGAGACTAGT 57.855 50.000 0.00 0.00 0.00 2.57
6755 7867 1.137086 GCTTGGCGAAGATGGAGACTA 59.863 52.381 13.20 0.00 0.00 2.59
6756 7868 0.107945 GCTTGGCGAAGATGGAGACT 60.108 55.000 13.20 0.00 0.00 3.24
6767 7879 2.192664 TTTTGTATCCTGCTTGGCGA 57.807 45.000 0.00 0.00 35.26 5.54
6768 7880 2.480073 CCATTTTGTATCCTGCTTGGCG 60.480 50.000 0.00 0.00 35.26 5.69
6769 7881 2.497273 ACCATTTTGTATCCTGCTTGGC 59.503 45.455 0.00 0.00 35.26 4.52
6770 7882 3.763360 TGACCATTTTGTATCCTGCTTGG 59.237 43.478 0.00 0.00 37.10 3.61
6772 7884 6.400568 CATTTGACCATTTTGTATCCTGCTT 58.599 36.000 0.00 0.00 0.00 3.91
6773 7885 5.105228 CCATTTGACCATTTTGTATCCTGCT 60.105 40.000 0.00 0.00 0.00 4.24
6775 7887 5.111293 GCCATTTGACCATTTTGTATCCTG 58.889 41.667 0.00 0.00 0.00 3.86
6776 7888 4.142182 CGCCATTTGACCATTTTGTATCCT 60.142 41.667 0.00 0.00 0.00 3.24
6777 7889 4.111916 CGCCATTTGACCATTTTGTATCC 58.888 43.478 0.00 0.00 0.00 2.59
6779 7891 3.678529 GCCGCCATTTGACCATTTTGTAT 60.679 43.478 0.00 0.00 0.00 2.29
6780 7892 2.353208 GCCGCCATTTGACCATTTTGTA 60.353 45.455 0.00 0.00 0.00 2.41
6781 7893 1.607767 GCCGCCATTTGACCATTTTGT 60.608 47.619 0.00 0.00 0.00 2.83
6782 7894 1.077915 GCCGCCATTTGACCATTTTG 58.922 50.000 0.00 0.00 0.00 2.44
6783 7895 0.036483 GGCCGCCATTTGACCATTTT 60.036 50.000 3.91 0.00 0.00 1.82
6786 7898 2.759560 GGGCCGCCATTTGACCAT 60.760 61.111 12.58 0.00 0.00 3.55
6789 7901 2.828549 ATCGGGCCGCCATTTGAC 60.829 61.111 23.83 0.00 0.00 3.18
6790 7902 2.828095 CATCGGGCCGCCATTTGA 60.828 61.111 23.83 1.37 0.00 2.69
6791 7903 2.413963 TTCATCGGGCCGCCATTTG 61.414 57.895 23.83 13.10 0.00 2.32
6792 7904 2.044451 TTCATCGGGCCGCCATTT 60.044 55.556 23.83 0.00 0.00 2.32
6793 7905 2.828549 GTTCATCGGGCCGCCATT 60.829 61.111 23.83 2.49 0.00 3.16
6795 7907 4.467084 GAGTTCATCGGGCCGCCA 62.467 66.667 23.83 5.12 0.00 5.69
6811 7923 1.125093 AGAACACGGGTGGATGTGGA 61.125 55.000 0.00 0.00 40.39 4.02
6814 7926 1.677552 GGAGAACACGGGTGGATGT 59.322 57.895 0.00 0.00 34.19 3.06
6820 7932 3.310860 GATGGCGGAGAACACGGGT 62.311 63.158 0.00 0.00 0.00 5.28
6841 7971 3.587797 TGGTATTGACTCGACACCTTC 57.412 47.619 0.00 0.00 0.00 3.46
6848 7978 1.332686 CGACCGATGGTATTGACTCGA 59.667 52.381 0.00 0.00 35.25 4.04
6853 7983 1.066787 TGCAACGACCGATGGTATTGA 60.067 47.619 13.76 1.06 35.25 2.57
6861 7991 0.949105 GTTCCAGTGCAACGACCGAT 60.949 55.000 0.00 0.00 45.86 4.18
6877 8007 3.929610 CCTTGATCCTTTCAGTCGAGTTC 59.070 47.826 0.00 0.00 35.27 3.01
6963 8265 9.432982 AGGCCCACTTTCATATTTCAAATATTA 57.567 29.630 0.00 0.00 0.00 0.98
6969 8271 8.830915 TTATTAGGCCCACTTTCATATTTCAA 57.169 30.769 0.00 0.00 0.00 2.69
6970 8272 9.432982 AATTATTAGGCCCACTTTCATATTTCA 57.567 29.630 0.00 0.00 0.00 2.69
6985 8287 7.212274 AGAATCACATTTGCAATTATTAGGCC 58.788 34.615 0.00 0.00 0.00 5.19
6995 8297 5.163723 GCTAGCACTAGAATCACATTTGCAA 60.164 40.000 10.63 0.00 35.21 4.08
7002 8304 9.645059 GATTATATTGCTAGCACTAGAATCACA 57.355 33.333 34.43 15.92 38.50 3.58
7003 8305 9.645059 TGATTATATTGCTAGCACTAGAATCAC 57.355 33.333 36.33 24.47 40.94 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.