Multiple sequence alignment - TraesCS6D01G152800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G152800 chr6D 100.000 4555 0 0 1 4555 126871435 126875989 0.000000e+00 8412.0
1 TraesCS6D01G152800 chr6D 81.944 72 13 0 4283 4354 428926035 428925964 1.370000e-05 62.1
2 TraesCS6D01G152800 chr6A 96.512 3641 99 12 851 4470 152060327 152056694 0.000000e+00 5995.0
3 TraesCS6D01G152800 chr6A 92.317 794 36 14 1 772 152061162 152060372 0.000000e+00 1105.0
4 TraesCS6D01G152800 chr6A 93.103 87 6 0 4469 4555 152056533 152056447 1.330000e-25 128.0
5 TraesCS6D01G152800 chr6A 95.652 46 2 0 4307 4352 88774789 88774744 1.760000e-09 75.0
6 TraesCS6D01G152800 chr6A 84.722 72 11 0 4283 4354 573510880 573510809 6.320000e-09 73.1
7 TraesCS6D01G152800 chr6B 94.575 3539 122 19 989 4470 225869115 225872640 0.000000e+00 5408.0
8 TraesCS6D01G152800 chr6B 97.983 595 12 0 1 595 225867968 225868562 0.000000e+00 1033.0
9 TraesCS6D01G152800 chr6B 94.798 173 5 2 615 784 225868656 225868827 2.700000e-67 267.0
10 TraesCS6D01G152800 chr6B 91.515 165 11 3 838 1001 225868833 225868995 1.650000e-54 224.0
11 TraesCS6D01G152800 chr1D 84.892 139 21 0 184 322 472561544 472561682 1.710000e-29 141.0
12 TraesCS6D01G152800 chr5B 84.173 139 22 0 184 322 532877282 532877420 7.950000e-28 135.0
13 TraesCS6D01G152800 chr5B 79.699 133 27 0 196 328 381715364 381715232 3.750000e-16 97.1
14 TraesCS6D01G152800 chr5B 91.803 61 4 1 4292 4351 564511981 564512041 2.920000e-12 84.2
15 TraesCS6D01G152800 chr5B 93.750 48 3 0 4290 4337 473784920 473784873 6.320000e-09 73.1
16 TraesCS6D01G152800 chr5A 84.173 139 22 0 184 322 553421511 553421649 7.950000e-28 135.0
17 TraesCS6D01G152800 chr1B 84.286 140 20 2 184 322 657272693 657272831 7.950000e-28 135.0
18 TraesCS6D01G152800 chr1B 97.561 41 1 0 4314 4354 429763272 429763232 2.270000e-08 71.3
19 TraesCS6D01G152800 chr1A 84.173 139 22 0 184 322 566564801 566564939 7.950000e-28 135.0
20 TraesCS6D01G152800 chr5D 82.734 139 24 0 184 322 438360600 438360738 1.720000e-24 124.0
21 TraesCS6D01G152800 chr5D 100.000 29 0 0 4284 4312 325659067 325659039 2.000000e-03 54.7
22 TraesCS6D01G152800 chr4A 89.041 73 4 1 4283 4351 227091290 227091218 2.260000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G152800 chr6D 126871435 126875989 4554 False 8412.000000 8412 100.000000 1 4555 1 chr6D.!!$F1 4554
1 TraesCS6D01G152800 chr6A 152056447 152061162 4715 True 2409.333333 5995 93.977333 1 4555 3 chr6A.!!$R3 4554
2 TraesCS6D01G152800 chr6B 225867968 225872640 4672 False 1733.000000 5408 94.717750 1 4470 4 chr6B.!!$F1 4469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1086 0.394488 TCTCTCTTCGACGGATGCCT 60.394 55.000 0.0 0.0 0.00 4.75 F
1340 1566 0.105658 TGATCTAACCCTCCTCCCCG 60.106 60.000 0.0 0.0 0.00 5.73 F
1342 1568 0.342313 ATCTAACCCTCCTCCCCGTT 59.658 55.000 0.0 0.0 0.00 4.44 F
2021 2256 1.134220 TCCGCTTCAGGTGTTGTTTCT 60.134 47.619 0.0 0.0 0.00 2.52 F
2546 2781 3.497640 GCTTGATCATTCCCTGATTCTCG 59.502 47.826 0.0 0.0 44.83 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2256 1.978080 ATCGCACCCAATTGCTGCA 60.978 52.632 20.26 0.00 40.62 4.41 R
2546 2781 4.762251 AGGTGAAAAGAAATACTCACAGCC 59.238 41.667 3.72 0.00 39.97 4.85 R
2797 3059 5.690464 AGAATAGTCAGAAGGAATGCTGT 57.310 39.130 0.00 0.00 33.90 4.40 R
3401 3664 0.251742 CAGATCCCCAAGCCCAAACA 60.252 55.000 0.00 0.00 0.00 2.83 R
4179 4463 2.366590 TGGACATCACTAGCTATGGCAG 59.633 50.000 11.72 1.38 41.70 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 0.842467 AGCAGTACTTCCTGGGCCTT 60.842 55.000 4.53 0.00 32.92 4.35
102 103 0.460459 GCCTTGAGAAGTACCTCGGC 60.460 60.000 0.00 0.00 35.99 5.54
303 304 1.000771 CCTCCTCGACCACCTCTCA 60.001 63.158 0.00 0.00 0.00 3.27
533 534 4.808077 AATTAGTGCATTGCATCTCTCG 57.192 40.909 15.49 0.00 41.91 4.04
543 544 4.397481 TTGCATCTCTCGTCATCTTCAT 57.603 40.909 0.00 0.00 0.00 2.57
548 553 5.346522 CATCTCTCGTCATCTTCATCAACA 58.653 41.667 0.00 0.00 0.00 3.33
598 605 4.996344 TCTGGTTATCGTACGTGCAATTA 58.004 39.130 16.05 0.00 0.00 1.40
608 615 1.498865 CGTGCAATTAGGCGGCTAGG 61.499 60.000 18.86 13.32 36.28 3.02
611 618 1.340600 TGCAATTAGGCGGCTAGGTTT 60.341 47.619 18.86 11.22 36.28 3.27
729 819 9.979578 TCAAAATAAAGTGAATTGTTGCTGTAT 57.020 25.926 0.00 0.00 0.00 2.29
736 826 8.574196 AAGTGAATTGTTGCTGTATAAAACAC 57.426 30.769 0.00 0.00 33.73 3.32
737 827 7.711846 AGTGAATTGTTGCTGTATAAAACACA 58.288 30.769 0.00 0.00 33.73 3.72
772 866 5.391312 AAGGTTTATCACAGGATGCAAAC 57.609 39.130 0.00 0.00 42.53 2.93
773 867 4.406456 AGGTTTATCACAGGATGCAAACA 58.594 39.130 0.00 0.00 42.53 2.83
774 868 4.832266 AGGTTTATCACAGGATGCAAACAA 59.168 37.500 0.00 0.00 42.53 2.83
775 869 5.304101 AGGTTTATCACAGGATGCAAACAAA 59.696 36.000 0.00 0.00 42.53 2.83
777 871 6.311200 GGTTTATCACAGGATGCAAACAAATC 59.689 38.462 0.00 0.00 42.53 2.17
780 874 4.143543 TCACAGGATGCAAACAAATCTGA 58.856 39.130 0.00 0.00 42.53 3.27
781 875 4.216902 TCACAGGATGCAAACAAATCTGAG 59.783 41.667 0.00 0.00 42.53 3.35
783 877 4.022589 ACAGGATGCAAACAAATCTGAGTG 60.023 41.667 0.00 0.00 42.53 3.51
786 880 5.069516 AGGATGCAAACAAATCTGAGTGTTT 59.930 36.000 13.53 13.53 46.27 2.83
787 881 5.754890 GGATGCAAACAAATCTGAGTGTTTT 59.245 36.000 15.64 6.05 43.64 2.43
788 882 6.258507 GGATGCAAACAAATCTGAGTGTTTTT 59.741 34.615 15.64 7.46 43.64 1.94
816 910 1.242076 GCAAATCTGAGTGGCTGTGT 58.758 50.000 0.00 0.00 0.00 3.72
817 911 1.610522 GCAAATCTGAGTGGCTGTGTT 59.389 47.619 0.00 0.00 0.00 3.32
818 912 2.035066 GCAAATCTGAGTGGCTGTGTTT 59.965 45.455 0.00 0.00 0.00 2.83
819 913 3.491447 GCAAATCTGAGTGGCTGTGTTTT 60.491 43.478 0.00 0.00 0.00 2.43
820 914 4.685924 CAAATCTGAGTGGCTGTGTTTTT 58.314 39.130 0.00 0.00 0.00 1.94
863 957 3.242446 GCGGTTTCTTCTATGCTTACAGC 60.242 47.826 0.00 0.00 42.82 4.40
911 1005 1.084289 AGAAACGCGTTGGAATAGGC 58.916 50.000 27.34 7.63 0.00 3.93
942 1036 2.195389 CGGTCCACGGTTAGATCCA 58.805 57.895 0.00 0.00 39.42 3.41
943 1037 0.750850 CGGTCCACGGTTAGATCCAT 59.249 55.000 0.00 0.00 39.42 3.41
945 1039 1.070289 GGTCCACGGTTAGATCCATCC 59.930 57.143 0.00 0.00 0.00 3.51
946 1040 1.037493 TCCACGGTTAGATCCATCCG 58.963 55.000 15.29 15.29 46.98 4.18
947 1041 0.600255 CCACGGTTAGATCCATCCGC 60.600 60.000 16.34 0.00 45.76 5.54
948 1042 0.939577 CACGGTTAGATCCATCCGCG 60.940 60.000 16.34 0.00 45.76 6.46
949 1043 1.372997 CGGTTAGATCCATCCGCGG 60.373 63.158 22.12 22.12 36.68 6.46
950 1044 1.668151 GGTTAGATCCATCCGCGGC 60.668 63.158 23.51 4.91 0.00 6.53
951 1045 2.022129 GTTAGATCCATCCGCGGCG 61.022 63.158 23.51 16.78 0.00 6.46
953 1047 2.416244 TTAGATCCATCCGCGGCGAC 62.416 60.000 25.92 8.33 0.00 5.19
992 1086 0.394488 TCTCTCTTCGACGGATGCCT 60.394 55.000 0.00 0.00 0.00 4.75
1018 1244 4.722535 TGCTTCCCCTCCTCCGCT 62.723 66.667 0.00 0.00 0.00 5.52
1020 1246 3.157949 CTTCCCCTCCTCCGCTCC 61.158 72.222 0.00 0.00 0.00 4.70
1242 1468 0.966370 GACACTACCACTCCCTCGCT 60.966 60.000 0.00 0.00 0.00 4.93
1340 1566 0.105658 TGATCTAACCCTCCTCCCCG 60.106 60.000 0.00 0.00 0.00 5.73
1342 1568 0.342313 ATCTAACCCTCCTCCCCGTT 59.658 55.000 0.00 0.00 0.00 4.44
1395 1621 7.687941 ATGAATTGAACTAAATGAGTCGGTT 57.312 32.000 0.00 0.00 37.44 4.44
1415 1641 8.294577 GTCGGTTTCACTTACCTAAATCAATTT 58.705 33.333 0.00 0.00 33.35 1.82
1480 1713 4.663120 AGGGGTTATGTATGCCAGTATGAA 59.337 41.667 0.00 0.00 39.69 2.57
1517 1750 8.454106 AGCGATGAATTATTTATTCCAGTATGC 58.546 33.333 0.00 0.00 41.68 3.14
1522 1757 9.081204 TGAATTATTTATTCCAGTATGCAGCAT 57.919 29.630 13.73 13.73 41.68 3.79
1552 1787 2.158711 TCTGGCCCAGATAATGAGCAAG 60.159 50.000 10.05 0.00 35.39 4.01
1724 1959 9.813826 TCATATTGAGTATATTCTGACCAGAGA 57.186 33.333 0.00 0.00 38.88 3.10
1797 2032 3.469739 CCATATTTTTCTTGCCCATGCC 58.530 45.455 0.00 0.00 36.33 4.40
1843 2078 7.322664 CCAATGGCATGAGTTAAAATTGTAGT 58.677 34.615 0.00 0.00 0.00 2.73
1859 2094 3.876341 TGTAGTTCAAAACCTCAACCGT 58.124 40.909 0.00 0.00 0.00 4.83
1862 2097 4.104696 AGTTCAAAACCTCAACCGTTTG 57.895 40.909 0.00 0.00 33.79 2.93
1916 2151 4.301072 ACCAAGTGTATAGGTGCAATGT 57.699 40.909 0.00 0.00 33.57 2.71
2021 2256 1.134220 TCCGCTTCAGGTGTTGTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
2176 2411 4.322057 AGGTGATAACTTTTGCCCTGAT 57.678 40.909 0.00 0.00 0.00 2.90
2546 2781 3.497640 GCTTGATCATTCCCTGATTCTCG 59.502 47.826 0.00 0.00 44.83 4.04
2733 2995 6.061441 TGAGTTCAAACTTGGAAATAGCAGA 58.939 36.000 0.00 0.00 39.88 4.26
2795 3057 5.049267 CCAATTTGCATCAGGTTTTTCAAGG 60.049 40.000 0.00 0.00 0.00 3.61
2797 3059 5.350504 TTTGCATCAGGTTTTTCAAGGAA 57.649 34.783 0.00 0.00 0.00 3.36
2806 3068 4.058124 GGTTTTTCAAGGAACAGCATTCC 58.942 43.478 10.98 10.98 38.86 3.01
3401 3664 2.492088 TGTTCTCATGTCGAACGGAGAT 59.508 45.455 18.65 0.00 42.73 2.75
3521 3784 0.320421 TCTTACAAGTCGCCACAGGC 60.320 55.000 0.00 0.00 46.75 4.85
3723 3986 6.863126 CACCTTTCACTTCCATGTAATGTTTC 59.137 38.462 0.00 0.00 44.81 2.78
3801 4065 2.028385 GGTGATACTGGAGTTTGACGGT 60.028 50.000 0.00 0.00 0.00 4.83
3972 4244 8.807948 ATGGACTAGTAAAAGTAGTACCGTTA 57.192 34.615 0.00 0.00 34.68 3.18
4079 4363 7.047891 TGTGTAATAAGCTCTTTCCTACCATG 58.952 38.462 0.00 0.00 0.00 3.66
4413 4701 7.416154 AACAATAAGCAAATGATATGCATGC 57.584 32.000 11.82 11.82 46.22 4.06
4436 4724 8.109705 TGCTACTTGACAAAACATCAATACAT 57.890 30.769 0.00 0.00 35.57 2.29
4447 4735 7.475771 AAACATCAATACATTTGCGTTTGTT 57.524 28.000 0.00 0.00 0.00 2.83
4475 4763 8.898761 TCAATAGTGTTTTCTTTTCTAGTTGCA 58.101 29.630 0.00 0.00 0.00 4.08
4493 4943 4.844998 TGCAATTTGTAACTGCTAGCAA 57.155 36.364 19.86 0.24 37.00 3.91
4496 4946 5.163513 GCAATTTGTAACTGCTAGCAATGT 58.836 37.500 19.86 11.44 33.20 2.71
4499 4949 8.128582 GCAATTTGTAACTGCTAGCAATGTATA 58.871 33.333 19.86 6.60 33.20 1.47
4528 4978 2.078226 TTGCGACGACTAGCAATGC 58.922 52.632 0.00 0.00 46.83 3.56
4540 4990 5.401972 CGACTAGCAATGCATTTGAAAAACA 59.598 36.000 9.83 0.00 37.53 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.707849 GCCGCCGAGGTACTTCTCA 61.708 63.158 3.27 0.00 41.55 3.27
159 160 1.178276 TCTCCTTCTCGCTCTTGGTC 58.822 55.000 0.00 0.00 0.00 4.02
303 304 0.253610 TGTTGTTGTTGACGGGGTCT 59.746 50.000 0.00 0.00 33.15 3.85
508 509 5.575957 AGAGATGCAATGCACTAATTTTCG 58.424 37.500 11.23 0.00 43.04 3.46
533 534 5.873712 AGACACAGATGTTGATGAAGATGAC 59.126 40.000 0.00 0.00 39.95 3.06
543 544 4.821805 GGGAAAGAAAGACACAGATGTTGA 59.178 41.667 0.00 0.00 39.95 3.18
548 553 2.876079 GCGGGGAAAGAAAGACACAGAT 60.876 50.000 0.00 0.00 0.00 2.90
598 605 1.375523 CGTCAAAACCTAGCCGCCT 60.376 57.895 0.00 0.00 0.00 5.52
608 615 1.435577 ACGGCCACTATCGTCAAAAC 58.564 50.000 2.24 0.00 34.20 2.43
611 618 2.304092 AGATACGGCCACTATCGTCAA 58.696 47.619 2.24 0.00 40.31 3.18
729 819 7.625469 ACCTTTTCCCAAAATTCTGTGTTTTA 58.375 30.769 0.00 0.00 0.00 1.52
734 824 7.930865 TGATAAACCTTTTCCCAAAATTCTGTG 59.069 33.333 0.00 0.00 0.00 3.66
735 825 7.931407 GTGATAAACCTTTTCCCAAAATTCTGT 59.069 33.333 0.00 0.00 0.00 3.41
736 826 7.930865 TGTGATAAACCTTTTCCCAAAATTCTG 59.069 33.333 0.00 0.00 0.00 3.02
737 827 8.028652 TGTGATAAACCTTTTCCCAAAATTCT 57.971 30.769 0.00 0.00 0.00 2.40
786 880 6.735694 GCCACTCAGATTTGCAGTTCTAAAAA 60.736 38.462 0.66 0.00 0.00 1.94
787 881 5.278463 GCCACTCAGATTTGCAGTTCTAAAA 60.278 40.000 0.66 0.00 0.00 1.52
788 882 4.216257 GCCACTCAGATTTGCAGTTCTAAA 59.784 41.667 0.66 0.00 0.00 1.85
789 883 3.753272 GCCACTCAGATTTGCAGTTCTAA 59.247 43.478 0.66 0.00 0.00 2.10
790 884 3.008375 AGCCACTCAGATTTGCAGTTCTA 59.992 43.478 0.66 0.00 0.00 2.10
795 889 1.199327 CACAGCCACTCAGATTTGCAG 59.801 52.381 0.00 0.00 0.00 4.41
796 890 1.241165 CACAGCCACTCAGATTTGCA 58.759 50.000 0.00 0.00 0.00 4.08
824 918 0.521291 CGCAGCCGGATTCTCAAAAA 59.479 50.000 5.05 0.00 0.00 1.94
825 919 2.170738 CGCAGCCGGATTCTCAAAA 58.829 52.632 5.05 0.00 0.00 2.44
826 920 3.889227 CGCAGCCGGATTCTCAAA 58.111 55.556 5.05 0.00 0.00 2.69
836 930 0.652592 CATAGAAGAAACCGCAGCCG 59.347 55.000 0.00 0.00 0.00 5.52
837 931 0.378610 GCATAGAAGAAACCGCAGCC 59.621 55.000 0.00 0.00 0.00 4.85
863 957 2.028883 GCCCGATTTAAGAACTTCGTCG 59.971 50.000 0.00 0.00 0.00 5.12
911 1005 1.971695 GGACCGGTGAAAAGCTGGG 60.972 63.158 14.63 0.00 36.71 4.45
987 1081 1.001248 AAGCATCTGGGCAAGGCAT 59.999 52.632 0.00 0.00 35.83 4.40
992 1086 2.215451 GAGGGGAAGCATCTGGGCAA 62.215 60.000 0.00 0.00 35.83 4.52
1095 1321 2.779033 CCCGTACACTAGGCCGGAC 61.779 68.421 5.05 0.00 43.01 4.79
1102 1328 1.135575 GTCACCGAACCCGTACACTAG 60.136 57.143 0.00 0.00 0.00 2.57
1112 1338 1.525077 TGGCTGTTGTCACCGAACC 60.525 57.895 0.00 0.00 0.00 3.62
1242 1468 1.457643 CTCCCCGGCAGAGGATACA 60.458 63.158 11.02 0.00 41.41 2.29
1340 1566 3.145228 CTCGAAGGGCAGAGGAAAC 57.855 57.895 0.00 0.00 0.00 2.78
1395 1621 9.589461 TGGGTAAAATTGATTTAGGTAAGTGAA 57.411 29.630 0.00 0.00 34.21 3.18
1415 1641 7.232534 AGACTTCAGTAAAATTGCAATGGGTAA 59.767 33.333 13.82 1.23 0.00 2.85
1480 1713 4.395959 AATTCATCGCTTTGGCATGAAT 57.604 36.364 15.58 15.58 46.06 2.57
1516 1749 2.537401 GCCAGAAAGAAATGATGCTGC 58.463 47.619 0.00 0.00 0.00 5.25
1517 1750 2.159142 GGGCCAGAAAGAAATGATGCTG 60.159 50.000 4.39 0.00 0.00 4.41
1522 1757 3.744940 ATCTGGGCCAGAAAGAAATGA 57.255 42.857 37.86 14.46 44.04 2.57
1552 1787 6.697892 GGTAGTACTGAATAAGCACATCACTC 59.302 42.308 5.39 0.00 0.00 3.51
1565 1800 7.620880 TCTTTGTTATGCTGGTAGTACTGAAT 58.379 34.615 5.39 0.00 0.00 2.57
1718 1953 6.434028 TCCATGTTAAGGTTTGAATTCTCTGG 59.566 38.462 7.05 0.83 0.00 3.86
1724 1959 6.825610 TGCTTTCCATGTTAAGGTTTGAATT 58.174 32.000 6.28 0.00 0.00 2.17
1797 2032 9.683069 CATTGGCTAGTATTTTATTTAAGGCTG 57.317 33.333 0.00 0.00 0.00 4.85
1843 2078 4.522722 AACAAACGGTTGAGGTTTTGAA 57.477 36.364 22.35 0.00 38.60 2.69
1936 2171 2.620585 GGATTGCTCCAAGTATTCCTGC 59.379 50.000 0.00 0.00 41.64 4.85
2021 2256 1.978080 ATCGCACCCAATTGCTGCA 60.978 52.632 20.26 0.00 40.62 4.41
2176 2411 7.282585 AGTAAGCAGCATCCAATTAGTTCATA 58.717 34.615 0.00 0.00 0.00 2.15
2546 2781 4.762251 AGGTGAAAAGAAATACTCACAGCC 59.238 41.667 3.72 0.00 39.97 4.85
2628 2863 6.321821 ACACTACTACCTTCAGAGAGAGAT 57.678 41.667 0.00 0.00 0.00 2.75
2795 3057 6.112058 AGAATAGTCAGAAGGAATGCTGTTC 58.888 40.000 0.00 0.00 33.90 3.18
2797 3059 5.690464 AGAATAGTCAGAAGGAATGCTGT 57.310 39.130 0.00 0.00 33.90 4.40
2839 3101 6.539103 CCCAGCTCCTAGTTTTCTATGTTAAC 59.461 42.308 0.00 0.00 0.00 2.01
3401 3664 0.251742 CAGATCCCCAAGCCCAAACA 60.252 55.000 0.00 0.00 0.00 2.83
3477 3740 4.205587 TCTACTCCTTCCAAGGTATCGAC 58.794 47.826 5.24 0.00 46.54 4.20
3521 3784 9.519191 TTAACCAATATGAGATTATGGTCCATG 57.481 33.333 15.10 0.00 0.00 3.66
3723 3986 3.738982 TGGACGAGCATAAATACATGGG 58.261 45.455 0.00 0.00 0.00 4.00
3819 4084 7.660112 TGCACATGAACTATCTCAACATTTTT 58.340 30.769 0.00 0.00 0.00 1.94
4066 4350 8.477419 AAAATGTTTTCTCATGGTAGGAAAGA 57.523 30.769 0.00 0.00 31.88 2.52
4093 4377 6.614694 ATCACTATACAACACCACCTTGTA 57.385 37.500 0.00 0.00 38.23 2.41
4179 4463 2.366590 TGGACATCACTAGCTATGGCAG 59.633 50.000 11.72 1.38 41.70 4.85
4334 4621 6.061022 TGCAATATACTCCCTTTGTCTCAA 57.939 37.500 0.00 0.00 0.00 3.02
4335 4622 5.692115 TGCAATATACTCCCTTTGTCTCA 57.308 39.130 0.00 0.00 0.00 3.27
4436 4724 6.952935 AACACTATTGAAAACAAACGCAAA 57.047 29.167 0.00 0.00 0.00 3.68
4470 4758 4.545610 TGCTAGCAGTTACAAATTGCAAC 58.454 39.130 14.93 0.98 45.45 4.17
4472 4760 4.844998 TTGCTAGCAGTTACAAATTGCA 57.155 36.364 18.45 0.00 45.45 4.08
4473 4761 5.163513 ACATTGCTAGCAGTTACAAATTGC 58.836 37.500 18.45 0.00 43.62 3.56
4475 4763 9.396022 AGTATACATTGCTAGCAGTTACAAATT 57.604 29.630 18.45 0.00 0.00 1.82
4493 4943 6.146510 TCGTCGCAAACAAGAAAAGTATACAT 59.853 34.615 5.50 0.00 0.00 2.29
4496 4946 5.693104 AGTCGTCGCAAACAAGAAAAGTATA 59.307 36.000 0.00 0.00 0.00 1.47
4499 4949 2.676342 AGTCGTCGCAAACAAGAAAAGT 59.324 40.909 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.