Multiple sequence alignment - TraesCS6D01G152400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G152400 chr6D 100.000 8623 0 0 1 8623 126439434 126430812 0.000000e+00 15924.0
1 TraesCS6D01G152400 chr6D 97.561 41 1 0 3972 4012 126434794 126434834 4.320000e-08 71.3
2 TraesCS6D01G152400 chr6D 97.561 41 1 0 4601 4641 126435423 126435463 4.320000e-08 71.3
3 TraesCS6D01G152400 chr6D 100.000 32 0 0 373 404 126439127 126439096 9.350000e-05 60.2
4 TraesCS6D01G152400 chr6B 97.854 4660 82 6 358 5015 224875596 224870953 0.000000e+00 8035.0
5 TraesCS6D01G152400 chr6B 96.932 3357 72 11 5015 8363 224870861 224867528 0.000000e+00 5600.0
6 TraesCS6D01G152400 chr6B 93.774 257 10 5 56 307 705325240 705325495 1.760000e-101 381.0
7 TraesCS6D01G152400 chr6B 91.176 272 18 3 8354 8623 224867377 224867110 1.770000e-96 364.0
8 TraesCS6D01G152400 chr6B 92.982 57 4 0 1 57 705325143 705325199 5.550000e-12 84.2
9 TraesCS6D01G152400 chr6B 97.561 41 1 0 3972 4012 224871327 224871367 4.320000e-08 71.3
10 TraesCS6D01G152400 chr6B 97.561 41 1 0 4601 4641 224871956 224871996 4.320000e-08 71.3
11 TraesCS6D01G152400 chr6B 100.000 30 0 0 7948 7977 642322308 642322279 1.000000e-03 56.5
12 TraesCS6D01G152400 chr6A 94.820 2857 104 20 5565 8395 153673259 153676097 0.000000e+00 4416.0
13 TraesCS6D01G152400 chr6A 97.270 1392 36 1 1825 3216 153669874 153671263 0.000000e+00 2359.0
14 TraesCS6D01G152400 chr6A 96.406 1419 45 5 346 1761 153668205 153669620 0.000000e+00 2333.0
15 TraesCS6D01G152400 chr6A 94.853 952 22 13 3216 4142 153671583 153672532 0.000000e+00 1461.0
16 TraesCS6D01G152400 chr6A 95.349 387 18 0 4310 4696 153672525 153672911 4.420000e-172 616.0
17 TraesCS6D01G152400 chr6A 96.575 292 10 0 4695 4986 153672943 153673234 1.300000e-132 484.0
18 TraesCS6D01G152400 chr6A 81.967 183 14 5 8445 8623 153678180 153678347 4.200000e-28 137.0
19 TraesCS6D01G152400 chr6A 97.015 67 2 0 1761 1827 153669647 153669713 7.070000e-21 113.0
20 TraesCS6D01G152400 chr6A 97.561 41 1 0 4601 4641 153672402 153672362 4.320000e-08 71.3
21 TraesCS6D01G152400 chr6A 97.561 41 1 0 3972 4012 153672856 153672816 4.320000e-08 71.3
22 TraesCS6D01G152400 chr6A 97.368 38 0 1 8267 8303 153676095 153676132 7.230000e-06 63.9
23 TraesCS6D01G152400 chr5B 93.124 1149 68 5 1866 3012 448848136 448849275 0.000000e+00 1674.0
24 TraesCS6D01G152400 chr5B 93.636 220 10 2 56 271 67955101 67955320 8.350000e-85 326.0
25 TraesCS6D01G152400 chr5B 91.620 179 12 3 4143 4319 432709735 432709912 2.400000e-60 244.0
26 TraesCS6D01G152400 chr7A 93.774 257 10 5 56 307 577681737 577681482 1.760000e-101 381.0
27 TraesCS6D01G152400 chr7A 94.388 196 11 0 5047 5242 196554987 196555182 1.410000e-77 302.0
28 TraesCS6D01G152400 chr7A 94.737 57 3 0 1 57 577681834 577681778 1.190000e-13 89.8
29 TraesCS6D01G152400 chr2A 93.385 257 11 4 56 307 659270416 659270671 8.170000e-100 375.0
30 TraesCS6D01G152400 chr2A 94.388 196 10 1 5047 5242 449270922 449271116 5.060000e-77 300.0
31 TraesCS6D01G152400 chr2A 94.611 167 8 1 4143 4309 13034821 13034656 3.090000e-64 257.0
32 TraesCS6D01G152400 chr4A 92.248 258 13 5 56 307 226039404 226039660 8.230000e-95 359.0
33 TraesCS6D01G152400 chr4D 98.361 183 3 0 5047 5229 220345149 220344967 1.080000e-83 322.0
34 TraesCS6D01G152400 chr4D 86.822 129 11 4 5896 6019 432768276 432768149 1.170000e-28 139.0
35 TraesCS6D01G152400 chr4D 95.745 47 2 0 7947 7993 254571681 254571635 9.280000e-10 76.8
36 TraesCS6D01G152400 chr4B 97.826 184 3 1 5047 5229 315725227 315725410 5.020000e-82 316.0
37 TraesCS6D01G152400 chr3A 95.918 196 6 2 5047 5242 51773746 51773939 5.020000e-82 316.0
38 TraesCS6D01G152400 chr3A 95.808 167 7 0 4143 4309 573979464 573979298 3.970000e-68 270.0
39 TraesCS6D01G152400 chr3A 87.500 128 10 4 5896 6018 210248644 210248518 9.020000e-30 143.0
40 TraesCS6D01G152400 chr3A 86.822 129 11 3 5895 6018 659015380 659015507 1.170000e-28 139.0
41 TraesCS6D01G152400 chr3A 92.308 52 3 1 7942 7992 57885330 57885279 1.200000e-08 73.1
42 TraesCS6D01G152400 chr1D 95.918 196 7 1 5047 5242 193964397 193964203 5.020000e-82 316.0
43 TraesCS6D01G152400 chr1A 96.277 188 6 1 5047 5234 508148800 508148986 3.020000e-79 307.0
44 TraesCS6D01G152400 chr1A 82.129 263 36 8 56 313 267848249 267847993 1.890000e-51 215.0
45 TraesCS6D01G152400 chr1A 87.597 129 10 3 5895 6018 5494049 5494176 2.510000e-30 145.0
46 TraesCS6D01G152400 chr1A 91.667 48 3 1 7947 7994 144553426 144553380 2.010000e-06 65.8
47 TraesCS6D01G152400 chr5D 94.388 196 10 1 5047 5242 67584580 67584774 5.060000e-77 300.0
48 TraesCS6D01G152400 chr5D 83.444 151 18 5 5874 6020 233248992 233248845 5.430000e-27 134.0
49 TraesCS6D01G152400 chr3D 95.266 169 8 0 4141 4309 479627397 479627565 1.430000e-67 268.0
50 TraesCS6D01G152400 chr3D 88.189 127 11 3 5896 6018 172356705 172356579 1.940000e-31 148.0
51 TraesCS6D01G152400 chr3D 91.398 93 6 2 194 284 44222397 44222305 9.090000e-25 126.0
52 TraesCS6D01G152400 chr2B 95.210 167 6 2 4143 4309 18927088 18927252 6.640000e-66 263.0
53 TraesCS6D01G152400 chr2B 88.800 125 8 3 5900 6019 185812836 185812959 1.940000e-31 148.0
54 TraesCS6D01G152400 chr2B 100.000 31 0 0 7947 7977 794324946 794324976 3.360000e-04 58.4
55 TraesCS6D01G152400 chr5A 96.552 145 4 1 4143 4286 277726499 277726643 1.120000e-58 239.0
56 TraesCS6D01G152400 chr5A 89.944 179 15 3 4143 4319 467742343 467742166 2.420000e-55 228.0
57 TraesCS6D01G152400 chr7B 94.079 152 9 0 4158 4309 5918372 5918221 1.870000e-56 231.0
58 TraesCS6D01G152400 chr2D 95.745 47 1 1 7947 7993 312630014 312629969 3.340000e-09 75.0
59 TraesCS6D01G152400 chr1B 100.000 30 0 0 7948 7977 2335686 2335657 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G152400 chr6D 126430812 126439434 8622 True 7992.100000 15924 100.000000 1 8623 2 chr6D.!!$R1 8622
1 TraesCS6D01G152400 chr6B 224867110 224875596 8486 True 4666.333333 8035 95.320667 358 8623 3 chr6B.!!$R2 8265
2 TraesCS6D01G152400 chr6A 153668205 153678347 10142 False 1331.433333 4416 94.624778 346 8623 9 chr6A.!!$F1 8277
3 TraesCS6D01G152400 chr5B 448848136 448849275 1139 False 1674.000000 1674 93.124000 1866 3012 1 chr5B.!!$F3 1146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.035820 TTACAAGGGGCGGCTTAGTG 60.036 55.000 9.56 4.97 0.00 2.74 F
177 178 0.107165 AAGGGGCGGCTTAGTGATTC 60.107 55.000 9.56 0.00 0.00 2.52 F
179 180 0.393808 GGGGCGGCTTAGTGATTCAA 60.394 55.000 9.56 0.00 0.00 2.69 F
415 416 0.447801 CCAAAACGGGAGCAAGATCG 59.552 55.000 0.00 0.00 0.00 3.69 F
1204 1208 1.154205 GCGACATCAGGTCCGGATTG 61.154 60.000 7.81 10.20 43.95 2.67 F
2165 2358 1.210478 GCCACTATCTTCCTGCTTCCA 59.790 52.381 0.00 0.00 0.00 3.53 F
2826 3019 2.289320 CCTTCGGGGCATCTCTCTATTG 60.289 54.545 0.00 0.00 0.00 1.90 F
4214 4753 1.355066 GCCTGCAGTTGCGACTAGTC 61.355 60.000 13.81 13.18 45.83 2.59 F
5000 5572 1.181098 AGGTTCATGCAGGCACAACC 61.181 55.000 21.30 21.30 40.16 3.77 F
5830 6502 0.106708 TTCAGCCTCACCACTGTGAC 59.893 55.000 9.86 0.00 46.40 3.67 F
6598 7273 2.350484 CGAATTACTATCGGAGAGCGCA 60.350 50.000 11.47 0.00 43.63 6.09 F
7382 8060 1.587043 CGGAAGACTCGCTGACCTGA 61.587 60.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1250 1.604755 GCATTGTCAACCGTACCACAA 59.395 47.619 0.00 0.00 33.42 3.33 R
1599 1603 2.616510 GTGCAACAGAGGAACAGCCTAT 60.617 50.000 0.00 0.00 42.49 2.57 R
2135 2328 3.314635 GGAAGATAGTGGCTGCATTTCAG 59.685 47.826 0.50 0.00 45.62 3.02 R
2165 2358 4.226384 GGGAGGGCAATATTTTCTGGAAT 58.774 43.478 0.00 0.00 0.00 3.01 R
2532 2725 2.143925 GACCTGAACCGGAAAAGTCTG 58.856 52.381 9.46 1.31 0.00 3.51 R
3767 4281 4.742167 CACGAGTTCAGTTATATCTGGCTG 59.258 45.833 10.27 0.00 36.25 4.85 R
4291 4830 0.882484 TGCATGGTTTTCGAGTCGCA 60.882 50.000 7.92 0.00 0.00 5.10 R
5553 6220 0.028902 GTGTTGGACTGCCGTGAAAC 59.971 55.000 0.00 0.00 36.79 2.78 R
6041 6713 2.092323 GTCAACCAGCCCTCCATAAAC 58.908 52.381 0.00 0.00 0.00 2.01 R
7108 7786 0.031449 GTATGAGCAGGACTCCTCGC 59.969 60.000 10.10 10.10 45.61 5.03 R
7483 8161 0.967380 CCACAGGGCATGGAACTTCC 60.967 60.000 3.46 0.20 39.87 3.46 R
8540 11427 1.075674 TGGTTTTCCCCAAGCAGCA 60.076 52.632 0.00 0.00 39.73 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.392234 CAATGTGAACGTTTCAATCATTTGA 57.608 32.000 0.46 0.00 42.15 2.69
25 26 8.009984 CAATGTGAACGTTTCAATCATTTGAT 57.990 30.769 0.46 0.00 41.38 2.57
26 27 9.127006 CAATGTGAACGTTTCAATCATTTGATA 57.873 29.630 0.46 0.00 41.38 2.15
27 28 9.689976 AATGTGAACGTTTCAATCATTTGATAA 57.310 25.926 0.46 0.00 41.38 1.75
28 29 9.689976 ATGTGAACGTTTCAATCATTTGATAAA 57.310 25.926 0.46 0.00 41.38 1.40
29 30 8.963130 TGTGAACGTTTCAATCATTTGATAAAC 58.037 29.630 0.46 8.11 41.38 2.01
34 35 8.434870 CGTTTCAATCATTTGATAAACGTTCT 57.565 30.769 21.77 0.00 43.85 3.01
35 36 9.536558 CGTTTCAATCATTTGATAAACGTTCTA 57.463 29.630 21.77 0.00 43.85 2.10
40 41 9.490663 CAATCATTTGATAAACGTTCTAGAACC 57.509 33.333 26.12 13.60 35.04 3.62
41 42 9.449719 AATCATTTGATAAACGTTCTAGAACCT 57.550 29.630 26.12 14.54 34.62 3.50
42 43 8.251750 TCATTTGATAAACGTTCTAGAACCTG 57.748 34.615 26.12 17.06 38.03 4.00
43 44 7.876068 TCATTTGATAAACGTTCTAGAACCTGT 59.124 33.333 26.12 17.65 38.03 4.00
44 45 7.416154 TTTGATAAACGTTCTAGAACCTGTG 57.584 36.000 26.12 16.11 38.03 3.66
45 46 6.335471 TGATAAACGTTCTAGAACCTGTGA 57.665 37.500 26.12 13.16 38.03 3.58
46 47 6.154445 TGATAAACGTTCTAGAACCTGTGAC 58.846 40.000 26.12 15.50 38.03 3.67
47 48 3.382048 AACGTTCTAGAACCTGTGACC 57.618 47.619 26.12 3.06 38.03 4.02
48 49 2.313317 ACGTTCTAGAACCTGTGACCA 58.687 47.619 26.12 0.00 38.03 4.02
49 50 2.696707 ACGTTCTAGAACCTGTGACCAA 59.303 45.455 26.12 0.00 38.03 3.67
50 51 3.323979 ACGTTCTAGAACCTGTGACCAAT 59.676 43.478 26.12 0.00 38.03 3.16
51 52 3.679980 CGTTCTAGAACCTGTGACCAATG 59.320 47.826 26.12 7.10 38.03 2.82
52 53 3.334583 TCTAGAACCTGTGACCAATGC 57.665 47.619 0.00 0.00 0.00 3.56
53 54 2.906389 TCTAGAACCTGTGACCAATGCT 59.094 45.455 0.00 0.00 0.00 3.79
54 55 2.664402 AGAACCTGTGACCAATGCTT 57.336 45.000 0.00 0.00 0.00 3.91
55 56 2.508526 AGAACCTGTGACCAATGCTTC 58.491 47.619 0.00 0.00 0.00 3.86
56 57 2.107204 AGAACCTGTGACCAATGCTTCT 59.893 45.455 0.00 0.00 0.00 2.85
57 58 3.327757 AGAACCTGTGACCAATGCTTCTA 59.672 43.478 0.00 0.00 0.00 2.10
58 59 3.340814 ACCTGTGACCAATGCTTCTAG 57.659 47.619 0.00 0.00 0.00 2.43
59 60 2.906389 ACCTGTGACCAATGCTTCTAGA 59.094 45.455 0.00 0.00 0.00 2.43
60 61 3.327757 ACCTGTGACCAATGCTTCTAGAA 59.672 43.478 4.81 4.81 0.00 2.10
61 62 3.686726 CCTGTGACCAATGCTTCTAGAAC 59.313 47.826 0.00 0.00 0.00 3.01
62 63 4.318332 CTGTGACCAATGCTTCTAGAACA 58.682 43.478 0.00 5.71 0.00 3.18
63 64 4.713553 TGTGACCAATGCTTCTAGAACAA 58.286 39.130 0.00 0.00 0.00 2.83
64 65 4.756642 TGTGACCAATGCTTCTAGAACAAG 59.243 41.667 0.00 0.00 0.00 3.16
65 66 4.154918 GTGACCAATGCTTCTAGAACAAGG 59.845 45.833 0.00 12.61 0.00 3.61
66 67 3.084786 ACCAATGCTTCTAGAACAAGGC 58.915 45.455 18.68 14.31 0.00 4.35
67 68 3.245052 ACCAATGCTTCTAGAACAAGGCT 60.245 43.478 13.65 0.00 0.00 4.58
68 69 4.019321 ACCAATGCTTCTAGAACAAGGCTA 60.019 41.667 13.65 3.61 0.00 3.93
69 70 5.128919 CCAATGCTTCTAGAACAAGGCTAT 58.871 41.667 13.65 5.32 0.00 2.97
70 71 5.591877 CCAATGCTTCTAGAACAAGGCTATT 59.408 40.000 13.65 9.59 0.00 1.73
71 72 6.459298 CCAATGCTTCTAGAACAAGGCTATTG 60.459 42.308 19.16 19.16 0.00 1.90
72 73 5.165961 TGCTTCTAGAACAAGGCTATTGT 57.834 39.130 13.65 2.52 0.00 2.71
73 74 5.560724 TGCTTCTAGAACAAGGCTATTGTT 58.439 37.500 16.90 16.90 44.43 2.83
74 75 6.707290 TGCTTCTAGAACAAGGCTATTGTTA 58.293 36.000 16.91 5.78 42.11 2.41
75 76 7.165485 TGCTTCTAGAACAAGGCTATTGTTAA 58.835 34.615 16.91 9.38 42.11 2.01
76 77 7.334421 TGCTTCTAGAACAAGGCTATTGTTAAG 59.666 37.037 16.91 16.39 42.11 1.85
77 78 7.549488 GCTTCTAGAACAAGGCTATTGTTAAGA 59.451 37.037 20.39 19.30 42.11 2.10
78 79 9.606631 CTTCTAGAACAAGGCTATTGTTAAGAT 57.393 33.333 20.42 12.09 42.11 2.40
79 80 9.601217 TTCTAGAACAAGGCTATTGTTAAGATC 57.399 33.333 20.42 11.37 42.11 2.75
80 81 8.758829 TCTAGAACAAGGCTATTGTTAAGATCA 58.241 33.333 16.91 4.35 42.11 2.92
81 82 9.553064 CTAGAACAAGGCTATTGTTAAGATCAT 57.447 33.333 16.91 0.00 42.11 2.45
82 83 8.443953 AGAACAAGGCTATTGTTAAGATCATC 57.556 34.615 16.91 6.12 42.11 2.92
83 84 8.049117 AGAACAAGGCTATTGTTAAGATCATCA 58.951 33.333 16.91 0.00 42.11 3.07
84 85 8.757982 AACAAGGCTATTGTTAAGATCATCAT 57.242 30.769 15.82 0.00 40.47 2.45
85 86 8.757982 ACAAGGCTATTGTTAAGATCATCATT 57.242 30.769 0.00 0.00 0.00 2.57
86 87 9.851686 ACAAGGCTATTGTTAAGATCATCATTA 57.148 29.630 0.00 0.00 0.00 1.90
90 91 9.979270 GGCTATTGTTAAGATCATCATTAATCG 57.021 33.333 0.00 0.00 0.00 3.34
95 96 8.076714 TGTTAAGATCATCATTAATCGTCTGC 57.923 34.615 0.00 0.00 0.00 4.26
96 97 7.171508 TGTTAAGATCATCATTAATCGTCTGCC 59.828 37.037 0.00 0.00 0.00 4.85
97 98 4.573900 AGATCATCATTAATCGTCTGCCC 58.426 43.478 0.00 0.00 0.00 5.36
98 99 3.836365 TCATCATTAATCGTCTGCCCA 57.164 42.857 0.00 0.00 0.00 5.36
99 100 4.356405 TCATCATTAATCGTCTGCCCAT 57.644 40.909 0.00 0.00 0.00 4.00
100 101 4.318332 TCATCATTAATCGTCTGCCCATC 58.682 43.478 0.00 0.00 0.00 3.51
101 102 4.040829 TCATCATTAATCGTCTGCCCATCT 59.959 41.667 0.00 0.00 0.00 2.90
102 103 5.245977 TCATCATTAATCGTCTGCCCATCTA 59.754 40.000 0.00 0.00 0.00 1.98
103 104 5.545063 TCATTAATCGTCTGCCCATCTAA 57.455 39.130 0.00 0.00 0.00 2.10
104 105 5.924356 TCATTAATCGTCTGCCCATCTAAA 58.076 37.500 0.00 0.00 0.00 1.85
105 106 6.353323 TCATTAATCGTCTGCCCATCTAAAA 58.647 36.000 0.00 0.00 0.00 1.52
106 107 6.483307 TCATTAATCGTCTGCCCATCTAAAAG 59.517 38.462 0.00 0.00 0.00 2.27
107 108 3.914426 ATCGTCTGCCCATCTAAAAGT 57.086 42.857 0.00 0.00 0.00 2.66
108 109 3.695830 TCGTCTGCCCATCTAAAAGTT 57.304 42.857 0.00 0.00 0.00 2.66
109 110 4.811969 TCGTCTGCCCATCTAAAAGTTA 57.188 40.909 0.00 0.00 0.00 2.24
110 111 5.155278 TCGTCTGCCCATCTAAAAGTTAA 57.845 39.130 0.00 0.00 0.00 2.01
111 112 4.933400 TCGTCTGCCCATCTAAAAGTTAAC 59.067 41.667 0.00 0.00 0.00 2.01
112 113 4.094442 CGTCTGCCCATCTAAAAGTTAACC 59.906 45.833 0.88 0.00 0.00 2.85
113 114 5.254115 GTCTGCCCATCTAAAAGTTAACCT 58.746 41.667 0.88 0.00 0.00 3.50
114 115 5.710567 GTCTGCCCATCTAAAAGTTAACCTT 59.289 40.000 0.88 0.00 33.79 3.50
115 116 6.208797 GTCTGCCCATCTAAAAGTTAACCTTT 59.791 38.462 7.33 7.33 45.39 3.11
116 117 6.433093 TCTGCCCATCTAAAAGTTAACCTTTC 59.567 38.462 5.47 0.00 42.62 2.62
117 118 5.479027 TGCCCATCTAAAAGTTAACCTTTCC 59.521 40.000 5.47 0.00 42.62 3.13
118 119 5.715279 GCCCATCTAAAAGTTAACCTTTCCT 59.285 40.000 5.47 0.00 42.62 3.36
119 120 6.350194 GCCCATCTAAAAGTTAACCTTTCCTG 60.350 42.308 5.47 3.22 42.62 3.86
120 121 6.946009 CCCATCTAAAAGTTAACCTTTCCTGA 59.054 38.462 5.47 4.51 42.62 3.86
121 122 7.094334 CCCATCTAAAAGTTAACCTTTCCTGAC 60.094 40.741 5.47 0.00 42.62 3.51
122 123 7.094334 CCATCTAAAAGTTAACCTTTCCTGACC 60.094 40.741 5.47 0.00 42.62 4.02
123 124 7.145474 TCTAAAAGTTAACCTTTCCTGACCT 57.855 36.000 5.47 0.00 42.62 3.85
124 125 7.580007 TCTAAAAGTTAACCTTTCCTGACCTT 58.420 34.615 5.47 0.00 42.62 3.50
125 126 8.716779 TCTAAAAGTTAACCTTTCCTGACCTTA 58.283 33.333 5.47 0.00 42.62 2.69
126 127 7.578310 AAAAGTTAACCTTTCCTGACCTTAC 57.422 36.000 0.88 0.00 42.62 2.34
127 128 5.899631 AGTTAACCTTTCCTGACCTTACA 57.100 39.130 0.88 0.00 0.00 2.41
128 129 5.618236 AGTTAACCTTTCCTGACCTTACAC 58.382 41.667 0.88 0.00 0.00 2.90
129 130 5.368816 AGTTAACCTTTCCTGACCTTACACT 59.631 40.000 0.88 0.00 0.00 3.55
130 131 4.790718 AACCTTTCCTGACCTTACACTT 57.209 40.909 0.00 0.00 0.00 3.16
131 132 4.086706 ACCTTTCCTGACCTTACACTTG 57.913 45.455 0.00 0.00 0.00 3.16
132 133 2.814336 CCTTTCCTGACCTTACACTTGC 59.186 50.000 0.00 0.00 0.00 4.01
133 134 3.476552 CTTTCCTGACCTTACACTTGCA 58.523 45.455 0.00 0.00 0.00 4.08
134 135 2.543777 TCCTGACCTTACACTTGCAC 57.456 50.000 0.00 0.00 0.00 4.57
135 136 1.148310 CCTGACCTTACACTTGCACG 58.852 55.000 0.00 0.00 0.00 5.34
136 137 0.512952 CTGACCTTACACTTGCACGC 59.487 55.000 0.00 0.00 0.00 5.34
137 138 0.179070 TGACCTTACACTTGCACGCA 60.179 50.000 0.00 0.00 0.00 5.24
138 139 0.941542 GACCTTACACTTGCACGCAA 59.058 50.000 4.12 4.12 0.00 4.85
139 140 0.661020 ACCTTACACTTGCACGCAAC 59.339 50.000 0.00 0.00 0.00 4.17
140 141 0.384230 CCTTACACTTGCACGCAACG 60.384 55.000 0.00 0.46 0.00 4.10
141 142 0.991770 CTTACACTTGCACGCAACGC 60.992 55.000 0.00 0.00 0.00 4.84
142 143 1.433053 TTACACTTGCACGCAACGCT 61.433 50.000 0.00 0.00 0.00 5.07
143 144 0.597898 TACACTTGCACGCAACGCTA 60.598 50.000 0.00 0.00 0.00 4.26
144 145 1.227999 ACACTTGCACGCAACGCTAT 61.228 50.000 0.00 0.00 0.00 2.97
145 146 0.519175 CACTTGCACGCAACGCTATC 60.519 55.000 0.00 0.00 0.00 2.08
146 147 0.948623 ACTTGCACGCAACGCTATCA 60.949 50.000 0.00 0.00 0.00 2.15
147 148 0.374758 CTTGCACGCAACGCTATCAT 59.625 50.000 0.00 0.00 0.00 2.45
148 149 0.801872 TTGCACGCAACGCTATCATT 59.198 45.000 0.00 0.00 0.00 2.57
149 150 1.646189 TGCACGCAACGCTATCATTA 58.354 45.000 0.00 0.00 0.00 1.90
150 151 2.209273 TGCACGCAACGCTATCATTAT 58.791 42.857 0.00 0.00 0.00 1.28
151 152 2.611751 TGCACGCAACGCTATCATTATT 59.388 40.909 0.00 0.00 0.00 1.40
152 153 2.966708 GCACGCAACGCTATCATTATTG 59.033 45.455 0.00 0.00 0.00 1.90
153 154 2.966708 CACGCAACGCTATCATTATTGC 59.033 45.455 0.00 0.00 41.74 3.56
154 155 2.872245 ACGCAACGCTATCATTATTGCT 59.128 40.909 5.80 0.00 42.73 3.91
155 156 3.312421 ACGCAACGCTATCATTATTGCTT 59.688 39.130 5.80 0.00 42.73 3.91
156 157 4.509970 ACGCAACGCTATCATTATTGCTTA 59.490 37.500 5.80 0.00 42.73 3.09
157 158 4.840772 CGCAACGCTATCATTATTGCTTAC 59.159 41.667 5.80 0.00 42.73 2.34
158 159 5.558083 CGCAACGCTATCATTATTGCTTACA 60.558 40.000 5.80 0.00 42.73 2.41
159 160 6.198687 GCAACGCTATCATTATTGCTTACAA 58.801 36.000 0.00 0.00 41.88 2.41
160 161 6.358030 GCAACGCTATCATTATTGCTTACAAG 59.642 38.462 0.00 0.00 41.88 3.16
161 162 6.545504 ACGCTATCATTATTGCTTACAAGG 57.454 37.500 0.00 0.00 39.69 3.61
162 163 5.470098 ACGCTATCATTATTGCTTACAAGGG 59.530 40.000 0.00 0.00 39.69 3.95
163 164 5.106555 CGCTATCATTATTGCTTACAAGGGG 60.107 44.000 0.00 0.00 39.69 4.79
164 165 5.335976 GCTATCATTATTGCTTACAAGGGGC 60.336 44.000 0.00 0.00 39.69 5.80
165 166 2.948979 TCATTATTGCTTACAAGGGGCG 59.051 45.455 0.00 0.00 39.69 6.13
166 167 1.757682 TTATTGCTTACAAGGGGCGG 58.242 50.000 0.00 0.00 39.69 6.13
167 168 0.750182 TATTGCTTACAAGGGGCGGC 60.750 55.000 0.00 0.00 39.69 6.53
168 169 2.499303 ATTGCTTACAAGGGGCGGCT 62.499 55.000 9.56 0.00 39.69 5.52
169 170 2.361230 GCTTACAAGGGGCGGCTT 60.361 61.111 9.56 0.00 0.00 4.35
170 171 1.078001 GCTTACAAGGGGCGGCTTA 60.078 57.895 9.56 0.00 0.00 3.09
171 172 1.095807 GCTTACAAGGGGCGGCTTAG 61.096 60.000 9.56 0.00 0.00 2.18
172 173 0.252197 CTTACAAGGGGCGGCTTAGT 59.748 55.000 9.56 5.56 0.00 2.24
173 174 0.035820 TTACAAGGGGCGGCTTAGTG 60.036 55.000 9.56 4.97 0.00 2.74
174 175 0.905809 TACAAGGGGCGGCTTAGTGA 60.906 55.000 9.56 0.00 0.00 3.41
175 176 1.224592 CAAGGGGCGGCTTAGTGAT 59.775 57.895 9.56 0.00 0.00 3.06
176 177 0.394352 CAAGGGGCGGCTTAGTGATT 60.394 55.000 9.56 0.00 0.00 2.57
177 178 0.107165 AAGGGGCGGCTTAGTGATTC 60.107 55.000 9.56 0.00 0.00 2.52
178 179 1.223487 GGGGCGGCTTAGTGATTCA 59.777 57.895 9.56 0.00 0.00 2.57
179 180 0.393808 GGGGCGGCTTAGTGATTCAA 60.394 55.000 9.56 0.00 0.00 2.69
180 181 1.680338 GGGCGGCTTAGTGATTCAAT 58.320 50.000 9.56 0.00 0.00 2.57
181 182 1.604278 GGGCGGCTTAGTGATTCAATC 59.396 52.381 9.56 0.00 0.00 2.67
182 183 2.565841 GGCGGCTTAGTGATTCAATCT 58.434 47.619 0.00 0.00 0.00 2.40
183 184 2.289002 GGCGGCTTAGTGATTCAATCTG 59.711 50.000 0.00 0.00 0.00 2.90
184 185 3.198068 GCGGCTTAGTGATTCAATCTGA 58.802 45.455 0.00 0.00 0.00 3.27
185 186 3.001736 GCGGCTTAGTGATTCAATCTGAC 59.998 47.826 0.00 0.00 0.00 3.51
186 187 4.437239 CGGCTTAGTGATTCAATCTGACT 58.563 43.478 0.00 0.00 0.00 3.41
187 188 5.592054 CGGCTTAGTGATTCAATCTGACTA 58.408 41.667 0.00 0.00 0.00 2.59
188 189 6.219473 CGGCTTAGTGATTCAATCTGACTAT 58.781 40.000 0.00 0.00 0.00 2.12
189 190 7.371159 CGGCTTAGTGATTCAATCTGACTATA 58.629 38.462 0.00 0.00 0.00 1.31
190 191 7.867909 CGGCTTAGTGATTCAATCTGACTATAA 59.132 37.037 0.00 0.00 0.00 0.98
191 192 9.202273 GGCTTAGTGATTCAATCTGACTATAAG 57.798 37.037 0.00 0.00 0.00 1.73
192 193 9.202273 GCTTAGTGATTCAATCTGACTATAAGG 57.798 37.037 0.00 0.00 0.00 2.69
193 194 9.202273 CTTAGTGATTCAATCTGACTATAAGGC 57.798 37.037 0.00 0.00 0.00 4.35
194 195 7.129457 AGTGATTCAATCTGACTATAAGGCA 57.871 36.000 0.00 0.00 0.00 4.75
203 204 5.521906 CTGACTATAAGGCAGCTTAGTGA 57.478 43.478 0.00 0.00 45.62 3.41
204 205 6.095432 CTGACTATAAGGCAGCTTAGTGAT 57.905 41.667 0.00 0.00 45.62 3.06
205 206 6.485830 TGACTATAAGGCAGCTTAGTGATT 57.514 37.500 0.00 0.00 0.00 2.57
206 207 6.283694 TGACTATAAGGCAGCTTAGTGATTG 58.716 40.000 0.00 0.00 0.00 2.67
207 208 6.127054 TGACTATAAGGCAGCTTAGTGATTGT 60.127 38.462 0.00 0.00 0.00 2.71
208 209 6.284459 ACTATAAGGCAGCTTAGTGATTGTC 58.716 40.000 0.00 0.00 0.00 3.18
209 210 3.423539 AAGGCAGCTTAGTGATTGTCA 57.576 42.857 0.00 0.00 0.00 3.58
210 211 3.641434 AGGCAGCTTAGTGATTGTCAT 57.359 42.857 0.00 0.00 0.00 3.06
211 212 3.276857 AGGCAGCTTAGTGATTGTCATG 58.723 45.455 0.00 0.00 0.00 3.07
212 213 3.012518 GGCAGCTTAGTGATTGTCATGT 58.987 45.455 0.00 0.00 0.00 3.21
213 214 3.441572 GGCAGCTTAGTGATTGTCATGTT 59.558 43.478 0.00 0.00 0.00 2.71
214 215 4.082571 GGCAGCTTAGTGATTGTCATGTTT 60.083 41.667 0.00 0.00 0.00 2.83
215 216 4.855388 GCAGCTTAGTGATTGTCATGTTTG 59.145 41.667 0.00 0.00 0.00 2.93
216 217 5.563475 GCAGCTTAGTGATTGTCATGTTTGT 60.563 40.000 0.00 0.00 0.00 2.83
217 218 6.441274 CAGCTTAGTGATTGTCATGTTTGTT 58.559 36.000 0.00 0.00 0.00 2.83
218 219 6.919662 CAGCTTAGTGATTGTCATGTTTGTTT 59.080 34.615 0.00 0.00 0.00 2.83
219 220 7.436080 CAGCTTAGTGATTGTCATGTTTGTTTT 59.564 33.333 0.00 0.00 0.00 2.43
220 221 7.436080 AGCTTAGTGATTGTCATGTTTGTTTTG 59.564 33.333 0.00 0.00 0.00 2.44
221 222 5.971895 AGTGATTGTCATGTTTGTTTTGC 57.028 34.783 0.00 0.00 0.00 3.68
222 223 5.663456 AGTGATTGTCATGTTTGTTTTGCT 58.337 33.333 0.00 0.00 0.00 3.91
223 224 5.750067 AGTGATTGTCATGTTTGTTTTGCTC 59.250 36.000 0.00 0.00 0.00 4.26
224 225 5.519566 GTGATTGTCATGTTTGTTTTGCTCA 59.480 36.000 0.00 0.00 0.00 4.26
225 226 6.035866 GTGATTGTCATGTTTGTTTTGCTCAA 59.964 34.615 0.00 0.00 0.00 3.02
226 227 6.592994 TGATTGTCATGTTTGTTTTGCTCAAA 59.407 30.769 0.00 0.00 33.28 2.69
227 228 6.981762 TTGTCATGTTTGTTTTGCTCAAAT 57.018 29.167 0.00 0.00 37.18 2.32
228 229 6.586868 TGTCATGTTTGTTTTGCTCAAATC 57.413 33.333 0.00 0.00 37.18 2.17
229 230 6.104665 TGTCATGTTTGTTTTGCTCAAATCA 58.895 32.000 0.00 2.89 37.18 2.57
230 231 6.592994 TGTCATGTTTGTTTTGCTCAAATCAA 59.407 30.769 12.30 12.30 37.88 2.57
231 232 7.118825 TGTCATGTTTGTTTTGCTCAAATCAAA 59.881 29.630 19.46 19.46 42.69 2.69
232 233 7.961827 GTCATGTTTGTTTTGCTCAAATCAAAA 59.038 29.630 22.58 16.50 44.57 2.44
233 234 8.176365 TCATGTTTGTTTTGCTCAAATCAAAAG 58.824 29.630 22.58 17.69 44.57 2.27
234 235 7.664082 TGTTTGTTTTGCTCAAATCAAAAGA 57.336 28.000 22.58 14.64 44.57 2.52
235 236 8.092521 TGTTTGTTTTGCTCAAATCAAAAGAA 57.907 26.923 22.58 14.06 44.57 2.52
236 237 8.562892 TGTTTGTTTTGCTCAAATCAAAAGAAA 58.437 25.926 22.58 14.97 45.66 2.52
240 241 9.557338 TGTTTTGCTCAAATCAAAAGAAAATTG 57.443 25.926 4.23 0.00 42.08 2.32
241 242 9.558648 GTTTTGCTCAAATCAAAAGAAAATTGT 57.441 25.926 1.67 0.00 42.08 2.71
245 246 9.557338 TGCTCAAATCAAAAGAAAATTGTTTTG 57.443 25.926 17.59 17.59 46.60 2.44
246 247 9.012448 GCTCAAATCAAAAGAAAATTGTTTTGG 57.988 29.630 21.20 10.45 45.80 3.28
253 254 9.712305 TCAAAAGAAAATTGTTTTGGTAGTTGA 57.288 25.926 21.20 4.95 45.80 3.18
257 258 9.719355 AAGAAAATTGTTTTGGTAGTTGAAACT 57.281 25.926 0.71 0.71 36.67 2.66
258 259 9.150348 AGAAAATTGTTTTGGTAGTTGAAACTG 57.850 29.630 5.95 0.00 35.27 3.16
259 260 8.840833 AAAATTGTTTTGGTAGTTGAAACTGT 57.159 26.923 5.95 0.00 40.07 3.55
260 261 8.840833 AAATTGTTTTGGTAGTTGAAACTGTT 57.159 26.923 5.95 0.00 40.07 3.16
261 262 8.840833 AATTGTTTTGGTAGTTGAAACTGTTT 57.159 26.923 5.29 5.29 40.07 2.83
262 263 7.644986 TTGTTTTGGTAGTTGAAACTGTTTG 57.355 32.000 11.03 0.00 40.07 2.93
263 264 6.982852 TGTTTTGGTAGTTGAAACTGTTTGA 58.017 32.000 11.03 0.00 40.07 2.69
264 265 7.087639 TGTTTTGGTAGTTGAAACTGTTTGAG 58.912 34.615 11.03 0.00 40.07 3.02
265 266 6.827586 TTTGGTAGTTGAAACTGTTTGAGT 57.172 33.333 11.03 4.89 40.07 3.41
266 267 5.811399 TGGTAGTTGAAACTGTTTGAGTG 57.189 39.130 11.03 0.00 40.07 3.51
267 268 4.638421 TGGTAGTTGAAACTGTTTGAGTGG 59.362 41.667 11.03 0.00 40.07 4.00
268 269 4.638865 GGTAGTTGAAACTGTTTGAGTGGT 59.361 41.667 11.03 0.00 40.07 4.16
269 270 5.818857 GGTAGTTGAAACTGTTTGAGTGGTA 59.181 40.000 11.03 0.00 40.07 3.25
270 271 6.316890 GGTAGTTGAAACTGTTTGAGTGGTAA 59.683 38.462 11.03 0.00 40.07 2.85
271 272 6.827586 AGTTGAAACTGTTTGAGTGGTAAA 57.172 33.333 11.03 0.00 37.98 2.01
272 273 7.222000 AGTTGAAACTGTTTGAGTGGTAAAA 57.778 32.000 11.03 0.00 37.98 1.52
273 274 7.836842 AGTTGAAACTGTTTGAGTGGTAAAAT 58.163 30.769 11.03 0.00 37.98 1.82
274 275 8.962679 AGTTGAAACTGTTTGAGTGGTAAAATA 58.037 29.630 11.03 0.00 37.98 1.40
275 276 9.744468 GTTGAAACTGTTTGAGTGGTAAAATAT 57.256 29.630 11.03 0.00 34.02 1.28
337 338 9.857957 TTAAATGTACGATTATTTCCCCAAAAC 57.142 29.630 0.00 0.00 0.00 2.43
338 339 5.548706 TGTACGATTATTTCCCCAAAACG 57.451 39.130 0.00 0.00 0.00 3.60
339 340 5.002516 TGTACGATTATTTCCCCAAAACGT 58.997 37.500 0.00 0.00 35.71 3.99
340 341 5.472820 TGTACGATTATTTCCCCAAAACGTT 59.527 36.000 0.00 0.00 33.72 3.99
341 342 6.652481 TGTACGATTATTTCCCCAAAACGTTA 59.348 34.615 0.00 0.00 33.72 3.18
342 343 6.762702 ACGATTATTTCCCCAAAACGTTAT 57.237 33.333 0.00 0.00 0.00 1.89
343 344 7.862512 ACGATTATTTCCCCAAAACGTTATA 57.137 32.000 0.00 0.00 0.00 0.98
344 345 8.454570 ACGATTATTTCCCCAAAACGTTATAT 57.545 30.769 0.00 0.00 0.00 0.86
415 416 0.447801 CCAAAACGGGAGCAAGATCG 59.552 55.000 0.00 0.00 0.00 3.69
440 443 7.375544 CGTAATTCGAAGTACTTACCTTCTAGC 59.624 40.741 27.25 3.28 42.86 3.42
460 463 3.709141 AGCACCTGCCTAAAAAGGAAAAA 59.291 39.130 0.00 0.00 43.38 1.94
461 464 3.807622 GCACCTGCCTAAAAAGGAAAAAC 59.192 43.478 0.00 0.00 37.01 2.43
462 465 4.048504 CACCTGCCTAAAAAGGAAAAACG 58.951 43.478 0.00 0.00 37.01 3.60
471 474 1.666054 AAGGAAAAACGTGTACGGCA 58.334 45.000 9.40 0.00 44.95 5.69
490 493 3.062639 GGCAACGTGTATCTCTCAACATG 59.937 47.826 0.00 0.00 38.35 3.21
507 510 7.434897 TCTCAACATGTGTTTGCAGAAATAAAC 59.565 33.333 0.00 0.00 35.83 2.01
1204 1208 1.154205 GCGACATCAGGTCCGGATTG 61.154 60.000 7.81 10.20 43.95 2.67
1228 1232 5.625311 GGTTATATTGCTTTAATGCTCGTGC 59.375 40.000 13.80 1.71 40.20 5.34
1241 1245 1.453524 GCTCGTGCATATAGCTGTTCG 59.546 52.381 4.26 0.00 45.94 3.95
1246 1250 3.062099 CGTGCATATAGCTGTTCGTTGTT 59.938 43.478 0.00 0.00 45.94 2.83
1523 1527 6.802834 GTCCATATAGCGCTAAGAAGTAACTC 59.197 42.308 22.98 2.08 0.00 3.01
1599 1603 5.770919 TGGAGGAGAGACTGAGATAAATGA 58.229 41.667 0.00 0.00 0.00 2.57
1771 1801 5.869344 CGAACCAAGTCATGTCTCTTCATTA 59.131 40.000 0.00 0.00 0.00 1.90
2165 2358 1.210478 GCCACTATCTTCCTGCTTCCA 59.790 52.381 0.00 0.00 0.00 3.53
2229 2422 4.098960 TGGAAATAGGTACTTACTCTGCGG 59.901 45.833 0.00 0.00 41.75 5.69
2532 2725 4.992688 TCAAACATCACAGTTTTCACACC 58.007 39.130 0.00 0.00 39.55 4.16
2826 3019 2.289320 CCTTCGGGGCATCTCTCTATTG 60.289 54.545 0.00 0.00 0.00 1.90
3744 4258 7.466746 AATGTTGTAAAGGTGCACTTCATAT 57.533 32.000 17.98 0.00 38.85 1.78
3778 4292 6.883744 TGTCACAAACATACAGCCAGATATA 58.116 36.000 0.00 0.00 31.20 0.86
4152 4691 3.300009 GAACAGCTGAACATGGTTTTCG 58.700 45.455 23.35 0.00 0.00 3.46
4214 4753 1.355066 GCCTGCAGTTGCGACTAGTC 61.355 60.000 13.81 13.18 45.83 2.59
4403 4942 1.804372 GCTTGTCCTAGCTCACCATCG 60.804 57.143 0.00 0.00 38.15 3.84
4538 5077 1.806496 TGGCCATCCTATGCAGTAGT 58.194 50.000 0.00 0.00 0.00 2.73
4809 5381 1.825474 GAGGAGGAAGATGACCAACGA 59.175 52.381 0.00 0.00 0.00 3.85
5000 5572 1.181098 AGGTTCATGCAGGCACAACC 61.181 55.000 21.30 21.30 40.16 3.77
5216 5883 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
5217 5884 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
5218 5885 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
5219 5886 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
5220 5887 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
5388 6055 3.576118 CCATCTGGTCCTAGTGTGGATAG 59.424 52.174 0.00 0.00 38.52 2.08
5406 6073 9.461312 TGTGGATAGAGTGTAATTAAGCAAATT 57.539 29.630 3.02 3.02 40.87 1.82
5415 6082 9.323985 AGTGTAATTAAGCAAATTTCAGCAAAA 57.676 25.926 3.62 0.00 36.06 2.44
5419 6086 6.509317 TTAAGCAAATTTCAGCAAAACTCG 57.491 33.333 3.62 0.00 0.00 4.18
5544 6211 6.773638 TCCTCTCTAGTTTTTGAAAGCTCAT 58.226 36.000 0.00 0.00 31.69 2.90
5643 6310 7.819415 TGATCCTTTACCAGCATAGATTATTCG 59.181 37.037 0.00 0.00 0.00 3.34
5742 6414 7.862372 TGCAACTAACTTTAATGCTCTCTTTTG 59.138 33.333 0.00 0.00 37.86 2.44
5761 6433 1.699634 TGTCTTAACCAGCTTGCTCCT 59.300 47.619 0.00 0.00 0.00 3.69
5830 6502 0.106708 TTCAGCCTCACCACTGTGAC 59.893 55.000 9.86 0.00 46.40 3.67
6041 6713 4.000988 AGGTCGCACCACAACTAAAATAG 58.999 43.478 7.86 0.00 41.95 1.73
6598 7273 2.350484 CGAATTACTATCGGAGAGCGCA 60.350 50.000 11.47 0.00 43.63 6.09
6834 7512 7.362401 GGCAGTCAAGTTCATTGTCATATCTTT 60.362 37.037 0.00 0.00 40.05 2.52
6967 7645 5.423290 TCAGTACTCATCACAGGTCATCAAT 59.577 40.000 0.00 0.00 0.00 2.57
6974 7652 7.016957 ACTCATCACAGGTCATCAATACCATAT 59.983 37.037 0.00 0.00 39.64 1.78
6975 7653 7.748677 TCATCACAGGTCATCAATACCATATT 58.251 34.615 0.00 0.00 39.64 1.28
7075 7753 3.058501 GCGCCGTGCTGGTAATAATTATT 60.059 43.478 14.86 14.86 41.73 1.40
7108 7786 4.222124 AGGATAAAACCAGTAGGCACAG 57.778 45.455 0.00 0.00 39.06 3.66
7217 7895 1.993369 GCGGCCTTGGTGATAAGCAC 61.993 60.000 0.00 0.00 46.98 4.40
7256 7934 3.806949 TTCTTGCCTTCACCACCTAAT 57.193 42.857 0.00 0.00 0.00 1.73
7257 7935 4.919774 TTCTTGCCTTCACCACCTAATA 57.080 40.909 0.00 0.00 0.00 0.98
7259 7937 3.585289 TCTTGCCTTCACCACCTAATACA 59.415 43.478 0.00 0.00 0.00 2.29
7373 8051 1.807742 ACTCAGAGAACGGAAGACTCG 59.192 52.381 3.79 0.00 40.58 4.18
7382 8060 1.587043 CGGAAGACTCGCTGACCTGA 61.587 60.000 0.00 0.00 0.00 3.86
7393 8071 3.118629 TCGCTGACCTGATAATTTGCTCT 60.119 43.478 0.00 0.00 0.00 4.09
7399 8077 4.197750 ACCTGATAATTTGCTCTGCAGAG 58.802 43.478 34.82 34.82 40.61 3.35
7483 8161 0.391263 CCCCCGAAAACGAAGGAGAG 60.391 60.000 0.00 0.00 0.00 3.20
7488 8166 2.288886 CCGAAAACGAAGGAGAGGAAGT 60.289 50.000 0.00 0.00 0.00 3.01
7696 8374 1.549170 CCAGGGAGCTGTAACTAACGT 59.451 52.381 0.00 0.00 0.00 3.99
7837 8515 1.803334 TGCCGTGGATGTTGTAAGTC 58.197 50.000 0.00 0.00 0.00 3.01
8163 8849 0.320683 CTGCGATGGACACTGGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
8374 9228 9.733556 TCTTATAGTTCTTTGCAAAAGATGGTA 57.266 29.630 13.84 1.25 0.00 3.25
8375 9229 9.994432 CTTATAGTTCTTTGCAAAAGATGGTAG 57.006 33.333 13.84 0.00 0.00 3.18
8376 9230 9.515226 TTATAGTTCTTTGCAAAAGATGGTAGT 57.485 29.630 13.84 1.02 0.00 2.73
8501 11388 3.435026 GGTAATGCTGCTCAGGGGAATAA 60.435 47.826 0.00 0.00 0.00 1.40
8511 11398 1.487976 CAGGGGAATAAGCAGCAGAGA 59.512 52.381 0.00 0.00 0.00 3.10
8515 11402 2.700897 GGGAATAAGCAGCAGAGACCTA 59.299 50.000 0.00 0.00 0.00 3.08
8522 11409 2.370189 AGCAGCAGAGACCTACTGTTTT 59.630 45.455 0.00 0.00 36.41 2.43
8524 11411 3.330267 CAGCAGAGACCTACTGTTTTCC 58.670 50.000 0.00 0.00 37.64 3.13
8529 11416 4.991687 CAGAGACCTACTGTTTTCCTCAAC 59.008 45.833 0.00 0.00 0.00 3.18
8532 11419 5.123936 AGACCTACTGTTTTCCTCAACAAC 58.876 41.667 0.00 0.00 36.22 3.32
8557 11445 0.686789 AATGCTGCTTGGGGAAAACC 59.313 50.000 0.00 0.00 39.11 3.27
8560 11448 0.827507 GCTGCTTGGGGAAAACCAGA 60.828 55.000 0.00 0.00 42.47 3.86
8563 11451 0.673985 GCTTGGGGAAAACCAGACAC 59.326 55.000 0.00 0.00 42.47 3.67
8577 11465 2.993899 CCAGACACGGAGTTATTGTCAC 59.006 50.000 3.95 0.00 41.61 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.392234 TCAAATGATTGAAACGTTCACATTG 57.608 32.000 0.00 4.93 42.47 2.82
14 15 9.490663 GGTTCTAGAACGTTTATCAAATGATTG 57.509 33.333 25.44 0.00 42.02 2.67
15 16 9.449719 AGGTTCTAGAACGTTTATCAAATGATT 57.550 29.630 25.44 0.00 42.02 2.57
16 17 8.883731 CAGGTTCTAGAACGTTTATCAAATGAT 58.116 33.333 24.44 1.01 42.02 2.45
17 18 7.876068 ACAGGTTCTAGAACGTTTATCAAATGA 59.124 33.333 24.44 0.00 42.02 2.57
18 19 7.957484 CACAGGTTCTAGAACGTTTATCAAATG 59.043 37.037 24.44 14.06 42.02 2.32
19 20 7.876068 TCACAGGTTCTAGAACGTTTATCAAAT 59.124 33.333 24.44 4.39 42.02 2.32
20 21 7.170320 GTCACAGGTTCTAGAACGTTTATCAAA 59.830 37.037 24.44 7.01 42.02 2.69
21 22 6.643770 GTCACAGGTTCTAGAACGTTTATCAA 59.356 38.462 24.44 7.88 42.02 2.57
22 23 6.154445 GTCACAGGTTCTAGAACGTTTATCA 58.846 40.000 24.44 7.76 42.02 2.15
23 24 5.575995 GGTCACAGGTTCTAGAACGTTTATC 59.424 44.000 24.44 15.87 42.02 1.75
24 25 5.011329 TGGTCACAGGTTCTAGAACGTTTAT 59.989 40.000 24.44 12.67 42.02 1.40
25 26 4.341806 TGGTCACAGGTTCTAGAACGTTTA 59.658 41.667 24.44 12.32 42.02 2.01
26 27 3.133362 TGGTCACAGGTTCTAGAACGTTT 59.867 43.478 24.44 17.46 42.02 3.60
27 28 2.696707 TGGTCACAGGTTCTAGAACGTT 59.303 45.455 24.44 14.94 42.02 3.99
28 29 2.313317 TGGTCACAGGTTCTAGAACGT 58.687 47.619 25.44 23.74 42.02 3.99
29 30 3.380479 TTGGTCACAGGTTCTAGAACG 57.620 47.619 25.44 16.79 42.02 3.95
30 31 3.437049 GCATTGGTCACAGGTTCTAGAAC 59.563 47.826 24.73 24.73 40.45 3.01
31 32 3.327757 AGCATTGGTCACAGGTTCTAGAA 59.672 43.478 0.00 0.00 0.00 2.10
32 33 2.906389 AGCATTGGTCACAGGTTCTAGA 59.094 45.455 0.00 0.00 0.00 2.43
33 34 3.340814 AGCATTGGTCACAGGTTCTAG 57.659 47.619 0.00 0.00 0.00 2.43
34 35 3.327757 AGAAGCATTGGTCACAGGTTCTA 59.672 43.478 11.83 0.00 44.25 2.10
35 36 2.107204 AGAAGCATTGGTCACAGGTTCT 59.893 45.455 0.00 0.00 42.14 3.01
36 37 2.508526 AGAAGCATTGGTCACAGGTTC 58.491 47.619 0.00 0.00 38.41 3.62
37 38 2.664402 AGAAGCATTGGTCACAGGTT 57.336 45.000 0.00 0.00 0.00 3.50
38 39 2.906389 TCTAGAAGCATTGGTCACAGGT 59.094 45.455 0.00 0.00 0.00 4.00
39 40 3.616956 TCTAGAAGCATTGGTCACAGG 57.383 47.619 0.00 0.00 0.00 4.00
40 41 4.318332 TGTTCTAGAAGCATTGGTCACAG 58.682 43.478 5.12 0.00 0.00 3.66
41 42 4.350368 TGTTCTAGAAGCATTGGTCACA 57.650 40.909 5.12 0.00 0.00 3.58
42 43 4.154918 CCTTGTTCTAGAAGCATTGGTCAC 59.845 45.833 5.12 0.00 0.00 3.67
43 44 4.326826 CCTTGTTCTAGAAGCATTGGTCA 58.673 43.478 5.12 0.00 0.00 4.02
44 45 3.127721 GCCTTGTTCTAGAAGCATTGGTC 59.872 47.826 5.12 6.09 0.00 4.02
45 46 3.084786 GCCTTGTTCTAGAAGCATTGGT 58.915 45.455 5.12 0.00 0.00 3.67
46 47 3.350833 AGCCTTGTTCTAGAAGCATTGG 58.649 45.455 5.12 12.25 0.00 3.16
47 48 6.094603 ACAATAGCCTTGTTCTAGAAGCATTG 59.905 38.462 21.51 21.51 0.00 2.82
48 49 6.183347 ACAATAGCCTTGTTCTAGAAGCATT 58.817 36.000 5.12 6.01 0.00 3.56
49 50 5.749462 ACAATAGCCTTGTTCTAGAAGCAT 58.251 37.500 5.12 0.46 0.00 3.79
50 51 5.165961 ACAATAGCCTTGTTCTAGAAGCA 57.834 39.130 5.12 4.62 0.00 3.91
51 52 7.549488 TCTTAACAATAGCCTTGTTCTAGAAGC 59.451 37.037 15.90 5.86 42.10 3.86
52 53 9.606631 ATCTTAACAATAGCCTTGTTCTAGAAG 57.393 33.333 15.90 13.83 42.10 2.85
53 54 9.601217 GATCTTAACAATAGCCTTGTTCTAGAA 57.399 33.333 15.90 0.00 42.10 2.10
54 55 8.758829 TGATCTTAACAATAGCCTTGTTCTAGA 58.241 33.333 15.90 17.68 42.10 2.43
55 56 8.948631 TGATCTTAACAATAGCCTTGTTCTAG 57.051 34.615 15.90 14.28 42.10 2.43
56 57 9.547753 GATGATCTTAACAATAGCCTTGTTCTA 57.452 33.333 15.90 7.36 42.10 2.10
57 58 8.049117 TGATGATCTTAACAATAGCCTTGTTCT 58.951 33.333 15.90 0.07 42.10 3.01
58 59 8.213518 TGATGATCTTAACAATAGCCTTGTTC 57.786 34.615 15.90 5.27 42.10 3.18
59 60 8.757982 ATGATGATCTTAACAATAGCCTTGTT 57.242 30.769 16.47 16.47 44.03 2.83
60 61 8.757982 AATGATGATCTTAACAATAGCCTTGT 57.242 30.769 0.00 0.00 0.00 3.16
64 65 9.979270 CGATTAATGATGATCTTAACAATAGCC 57.021 33.333 0.00 0.00 0.00 3.93
69 70 8.551205 GCAGACGATTAATGATGATCTTAACAA 58.449 33.333 0.00 0.00 0.00 2.83
70 71 7.171508 GGCAGACGATTAATGATGATCTTAACA 59.828 37.037 0.00 0.00 0.00 2.41
71 72 7.360438 GGGCAGACGATTAATGATGATCTTAAC 60.360 40.741 0.00 0.00 0.00 2.01
72 73 6.650807 GGGCAGACGATTAATGATGATCTTAA 59.349 38.462 0.00 0.00 0.00 1.85
73 74 6.166279 GGGCAGACGATTAATGATGATCTTA 58.834 40.000 0.00 0.00 0.00 2.10
74 75 4.999950 GGGCAGACGATTAATGATGATCTT 59.000 41.667 0.00 0.00 0.00 2.40
75 76 4.040829 TGGGCAGACGATTAATGATGATCT 59.959 41.667 0.00 0.00 0.00 2.75
76 77 4.318332 TGGGCAGACGATTAATGATGATC 58.682 43.478 0.00 0.00 0.00 2.92
77 78 4.356405 TGGGCAGACGATTAATGATGAT 57.644 40.909 0.00 0.00 0.00 2.45
78 79 3.836365 TGGGCAGACGATTAATGATGA 57.164 42.857 0.00 0.00 0.00 2.92
79 80 4.321718 AGATGGGCAGACGATTAATGATG 58.678 43.478 0.00 0.00 0.00 3.07
80 81 4.630644 AGATGGGCAGACGATTAATGAT 57.369 40.909 0.00 0.00 0.00 2.45
81 82 5.545063 TTAGATGGGCAGACGATTAATGA 57.455 39.130 0.00 0.00 0.00 2.57
82 83 6.260936 ACTTTTAGATGGGCAGACGATTAATG 59.739 38.462 0.00 0.00 0.00 1.90
83 84 6.357367 ACTTTTAGATGGGCAGACGATTAAT 58.643 36.000 0.00 0.00 0.00 1.40
84 85 5.741011 ACTTTTAGATGGGCAGACGATTAA 58.259 37.500 0.00 0.00 0.00 1.40
85 86 5.353394 ACTTTTAGATGGGCAGACGATTA 57.647 39.130 0.00 0.00 0.00 1.75
86 87 4.222124 ACTTTTAGATGGGCAGACGATT 57.778 40.909 0.00 0.00 0.00 3.34
87 88 3.914426 ACTTTTAGATGGGCAGACGAT 57.086 42.857 0.00 0.00 0.00 3.73
88 89 3.695830 AACTTTTAGATGGGCAGACGA 57.304 42.857 0.00 0.00 0.00 4.20
89 90 4.094442 GGTTAACTTTTAGATGGGCAGACG 59.906 45.833 5.42 0.00 0.00 4.18
90 91 5.254115 AGGTTAACTTTTAGATGGGCAGAC 58.746 41.667 5.42 0.00 0.00 3.51
91 92 5.514500 AGGTTAACTTTTAGATGGGCAGA 57.486 39.130 5.42 0.00 0.00 4.26
104 105 6.060136 GTGTAAGGTCAGGAAAGGTTAACTT 58.940 40.000 5.42 0.00 42.52 2.66
105 106 5.368816 AGTGTAAGGTCAGGAAAGGTTAACT 59.631 40.000 5.42 0.00 0.00 2.24
106 107 5.618236 AGTGTAAGGTCAGGAAAGGTTAAC 58.382 41.667 0.00 0.00 0.00 2.01
107 108 5.899631 AGTGTAAGGTCAGGAAAGGTTAA 57.100 39.130 0.00 0.00 0.00 2.01
108 109 5.617252 CAAGTGTAAGGTCAGGAAAGGTTA 58.383 41.667 0.00 0.00 0.00 2.85
109 110 4.461198 CAAGTGTAAGGTCAGGAAAGGTT 58.539 43.478 0.00 0.00 0.00 3.50
110 111 3.747708 GCAAGTGTAAGGTCAGGAAAGGT 60.748 47.826 0.00 0.00 0.00 3.50
111 112 2.814336 GCAAGTGTAAGGTCAGGAAAGG 59.186 50.000 0.00 0.00 0.00 3.11
112 113 3.251004 GTGCAAGTGTAAGGTCAGGAAAG 59.749 47.826 0.00 0.00 0.00 2.62
113 114 3.211045 GTGCAAGTGTAAGGTCAGGAAA 58.789 45.455 0.00 0.00 0.00 3.13
114 115 2.805295 CGTGCAAGTGTAAGGTCAGGAA 60.805 50.000 0.00 0.00 0.00 3.36
115 116 1.270094 CGTGCAAGTGTAAGGTCAGGA 60.270 52.381 0.00 0.00 0.00 3.86
116 117 1.148310 CGTGCAAGTGTAAGGTCAGG 58.852 55.000 0.00 0.00 0.00 3.86
117 118 0.512952 GCGTGCAAGTGTAAGGTCAG 59.487 55.000 0.59 0.00 0.00 3.51
118 119 0.179070 TGCGTGCAAGTGTAAGGTCA 60.179 50.000 0.59 0.00 0.00 4.02
119 120 0.941542 TTGCGTGCAAGTGTAAGGTC 59.058 50.000 2.58 0.00 0.00 3.85
120 121 0.661020 GTTGCGTGCAAGTGTAAGGT 59.339 50.000 7.66 0.00 36.52 3.50
121 122 0.384230 CGTTGCGTGCAAGTGTAAGG 60.384 55.000 7.66 0.00 36.52 2.69
122 123 0.991770 GCGTTGCGTGCAAGTGTAAG 60.992 55.000 7.66 0.00 36.52 2.34
123 124 1.010574 GCGTTGCGTGCAAGTGTAA 60.011 52.632 7.66 0.00 36.52 2.41
124 125 0.597898 TAGCGTTGCGTGCAAGTGTA 60.598 50.000 7.66 0.00 36.52 2.90
125 126 1.227999 ATAGCGTTGCGTGCAAGTGT 61.228 50.000 7.66 0.00 36.52 3.55
126 127 0.519175 GATAGCGTTGCGTGCAAGTG 60.519 55.000 7.66 5.03 36.52 3.16
127 128 0.948623 TGATAGCGTTGCGTGCAAGT 60.949 50.000 7.66 0.00 36.52 3.16
128 129 0.374758 ATGATAGCGTTGCGTGCAAG 59.625 50.000 7.66 3.86 36.52 4.01
129 130 0.801872 AATGATAGCGTTGCGTGCAA 59.198 45.000 2.58 2.58 33.85 4.08
130 131 1.646189 TAATGATAGCGTTGCGTGCA 58.354 45.000 0.00 0.00 33.85 4.57
131 132 2.949714 ATAATGATAGCGTTGCGTGC 57.050 45.000 0.00 0.00 0.00 5.34
132 133 2.966708 GCAATAATGATAGCGTTGCGTG 59.033 45.455 0.00 0.00 36.27 5.34
133 134 3.253371 GCAATAATGATAGCGTTGCGT 57.747 42.857 0.00 0.00 36.27 5.24
135 136 5.747565 TGTAAGCAATAATGATAGCGTTGC 58.252 37.500 0.00 0.00 43.97 4.17
136 137 6.852853 CCTTGTAAGCAATAATGATAGCGTTG 59.147 38.462 0.00 0.00 33.65 4.10
137 138 6.017109 CCCTTGTAAGCAATAATGATAGCGTT 60.017 38.462 0.00 0.00 33.65 4.84
138 139 5.470098 CCCTTGTAAGCAATAATGATAGCGT 59.530 40.000 0.00 0.00 33.65 5.07
139 140 5.106555 CCCCTTGTAAGCAATAATGATAGCG 60.107 44.000 0.00 0.00 33.65 4.26
140 141 5.335976 GCCCCTTGTAAGCAATAATGATAGC 60.336 44.000 0.00 0.00 33.65 2.97
141 142 5.106555 CGCCCCTTGTAAGCAATAATGATAG 60.107 44.000 0.00 0.00 33.65 2.08
142 143 4.759693 CGCCCCTTGTAAGCAATAATGATA 59.240 41.667 0.00 0.00 33.65 2.15
143 144 3.569701 CGCCCCTTGTAAGCAATAATGAT 59.430 43.478 0.00 0.00 33.65 2.45
144 145 2.948979 CGCCCCTTGTAAGCAATAATGA 59.051 45.455 0.00 0.00 33.65 2.57
145 146 2.034558 CCGCCCCTTGTAAGCAATAATG 59.965 50.000 0.00 0.00 33.65 1.90
146 147 2.306847 CCGCCCCTTGTAAGCAATAAT 58.693 47.619 0.00 0.00 33.65 1.28
147 148 1.757682 CCGCCCCTTGTAAGCAATAA 58.242 50.000 0.00 0.00 33.65 1.40
148 149 0.750182 GCCGCCCCTTGTAAGCAATA 60.750 55.000 0.00 0.00 33.65 1.90
149 150 2.052104 GCCGCCCCTTGTAAGCAAT 61.052 57.895 0.00 0.00 33.65 3.56
150 151 2.675075 GCCGCCCCTTGTAAGCAA 60.675 61.111 0.00 0.00 0.00 3.91
151 152 1.843462 TAAGCCGCCCCTTGTAAGCA 61.843 55.000 0.00 0.00 0.00 3.91
152 153 1.078001 TAAGCCGCCCCTTGTAAGC 60.078 57.895 0.00 0.00 0.00 3.09
153 154 0.252197 ACTAAGCCGCCCCTTGTAAG 59.748 55.000 0.00 0.00 0.00 2.34
154 155 0.035820 CACTAAGCCGCCCCTTGTAA 60.036 55.000 0.00 0.00 0.00 2.41
155 156 0.905809 TCACTAAGCCGCCCCTTGTA 60.906 55.000 0.00 0.00 0.00 2.41
156 157 1.562672 ATCACTAAGCCGCCCCTTGT 61.563 55.000 0.00 0.00 0.00 3.16
157 158 0.394352 AATCACTAAGCCGCCCCTTG 60.394 55.000 0.00 0.00 0.00 3.61
158 159 0.107165 GAATCACTAAGCCGCCCCTT 60.107 55.000 0.00 0.00 0.00 3.95
159 160 1.271840 TGAATCACTAAGCCGCCCCT 61.272 55.000 0.00 0.00 0.00 4.79
160 161 0.393808 TTGAATCACTAAGCCGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
161 162 1.604278 GATTGAATCACTAAGCCGCCC 59.396 52.381 0.00 0.00 0.00 6.13
162 163 2.289002 CAGATTGAATCACTAAGCCGCC 59.711 50.000 8.03 0.00 0.00 6.13
163 164 3.001736 GTCAGATTGAATCACTAAGCCGC 59.998 47.826 8.03 0.00 0.00 6.53
164 165 4.437239 AGTCAGATTGAATCACTAAGCCG 58.563 43.478 8.03 0.00 0.00 5.52
165 166 9.202273 CTTATAGTCAGATTGAATCACTAAGCC 57.798 37.037 8.03 0.00 0.00 4.35
166 167 9.202273 CCTTATAGTCAGATTGAATCACTAAGC 57.798 37.037 8.03 0.00 0.00 3.09
167 168 9.202273 GCCTTATAGTCAGATTGAATCACTAAG 57.798 37.037 8.03 4.99 0.00 2.18
168 169 8.704668 TGCCTTATAGTCAGATTGAATCACTAA 58.295 33.333 8.03 0.00 0.00 2.24
169 170 8.250143 TGCCTTATAGTCAGATTGAATCACTA 57.750 34.615 8.03 7.75 0.00 2.74
170 171 7.129457 TGCCTTATAGTCAGATTGAATCACT 57.871 36.000 8.03 5.75 0.00 3.41
171 172 6.073331 GCTGCCTTATAGTCAGATTGAATCAC 60.073 42.308 8.03 0.00 0.00 3.06
172 173 5.994054 GCTGCCTTATAGTCAGATTGAATCA 59.006 40.000 8.03 0.00 0.00 2.57
173 174 6.229733 AGCTGCCTTATAGTCAGATTGAATC 58.770 40.000 0.00 0.00 0.00 2.52
174 175 6.185114 AGCTGCCTTATAGTCAGATTGAAT 57.815 37.500 0.00 0.00 0.00 2.57
175 176 5.620738 AGCTGCCTTATAGTCAGATTGAA 57.379 39.130 0.00 0.00 0.00 2.69
176 177 5.620738 AAGCTGCCTTATAGTCAGATTGA 57.379 39.130 0.00 0.00 35.46 2.57
177 178 6.423302 CACTAAGCTGCCTTATAGTCAGATTG 59.577 42.308 0.00 5.22 37.11 2.67
178 179 6.325028 TCACTAAGCTGCCTTATAGTCAGATT 59.675 38.462 0.00 0.00 39.41 2.40
179 180 5.835819 TCACTAAGCTGCCTTATAGTCAGAT 59.164 40.000 0.00 0.00 33.31 2.90
180 181 5.201243 TCACTAAGCTGCCTTATAGTCAGA 58.799 41.667 0.00 0.00 33.31 3.27
181 182 5.521906 TCACTAAGCTGCCTTATAGTCAG 57.478 43.478 0.00 0.00 33.31 3.51
182 183 6.127054 ACAATCACTAAGCTGCCTTATAGTCA 60.127 38.462 0.00 0.00 33.31 3.41
183 184 6.284459 ACAATCACTAAGCTGCCTTATAGTC 58.716 40.000 0.00 0.00 33.31 2.59
184 185 6.127054 TGACAATCACTAAGCTGCCTTATAGT 60.127 38.462 0.00 0.00 33.31 2.12
185 186 6.283694 TGACAATCACTAAGCTGCCTTATAG 58.716 40.000 0.00 0.00 33.31 1.31
186 187 6.233905 TGACAATCACTAAGCTGCCTTATA 57.766 37.500 0.00 0.00 33.31 0.98
187 188 5.102953 TGACAATCACTAAGCTGCCTTAT 57.897 39.130 0.00 0.00 33.31 1.73
188 189 4.551702 TGACAATCACTAAGCTGCCTTA 57.448 40.909 0.00 0.00 32.47 2.69
189 190 3.423539 TGACAATCACTAAGCTGCCTT 57.576 42.857 0.00 0.00 35.05 4.35
190 191 3.276857 CATGACAATCACTAAGCTGCCT 58.723 45.455 0.00 0.00 0.00 4.75
191 192 3.012518 ACATGACAATCACTAAGCTGCC 58.987 45.455 0.00 0.00 0.00 4.85
192 193 4.691860 AACATGACAATCACTAAGCTGC 57.308 40.909 0.00 0.00 0.00 5.25
193 194 6.005583 ACAAACATGACAATCACTAAGCTG 57.994 37.500 0.00 0.00 0.00 4.24
194 195 6.639632 AACAAACATGACAATCACTAAGCT 57.360 33.333 0.00 0.00 0.00 3.74
195 196 7.558137 CAAAACAAACATGACAATCACTAAGC 58.442 34.615 0.00 0.00 0.00 3.09
196 197 7.436080 AGCAAAACAAACATGACAATCACTAAG 59.564 33.333 0.00 0.00 0.00 2.18
197 198 7.264221 AGCAAAACAAACATGACAATCACTAA 58.736 30.769 0.00 0.00 0.00 2.24
198 199 6.804677 AGCAAAACAAACATGACAATCACTA 58.195 32.000 0.00 0.00 0.00 2.74
199 200 5.663456 AGCAAAACAAACATGACAATCACT 58.337 33.333 0.00 0.00 0.00 3.41
200 201 5.519566 TGAGCAAAACAAACATGACAATCAC 59.480 36.000 0.00 0.00 0.00 3.06
201 202 5.658468 TGAGCAAAACAAACATGACAATCA 58.342 33.333 0.00 0.00 0.00 2.57
202 203 6.586868 TTGAGCAAAACAAACATGACAATC 57.413 33.333 0.00 0.00 0.00 2.67
203 204 6.981762 TTTGAGCAAAACAAACATGACAAT 57.018 29.167 0.00 0.00 33.25 2.71
204 205 6.592994 TGATTTGAGCAAAACAAACATGACAA 59.407 30.769 0.00 0.00 39.48 3.18
205 206 6.104665 TGATTTGAGCAAAACAAACATGACA 58.895 32.000 0.00 0.00 39.48 3.58
206 207 6.586868 TGATTTGAGCAAAACAAACATGAC 57.413 33.333 0.00 0.00 39.48 3.06
207 208 7.606858 TTTGATTTGAGCAAAACAAACATGA 57.393 28.000 20.30 5.63 43.35 3.07
208 209 8.176365 TCTTTTGATTTGAGCAAAACAAACATG 58.824 29.630 22.53 17.25 45.84 3.21
209 210 8.266392 TCTTTTGATTTGAGCAAAACAAACAT 57.734 26.923 22.53 0.00 45.84 2.71
210 211 7.664082 TCTTTTGATTTGAGCAAAACAAACA 57.336 28.000 22.53 13.91 45.84 2.83
211 212 8.947304 TTTCTTTTGATTTGAGCAAAACAAAC 57.053 26.923 22.53 5.99 45.84 2.93
214 215 9.557338 CAATTTTCTTTTGATTTGAGCAAAACA 57.443 25.926 0.00 0.91 39.51 2.83
215 216 9.558648 ACAATTTTCTTTTGATTTGAGCAAAAC 57.441 25.926 0.00 0.00 39.51 2.43
219 220 9.557338 CAAAACAATTTTCTTTTGATTTGAGCA 57.443 25.926 11.41 0.00 43.67 4.26
220 221 9.012448 CCAAAACAATTTTCTTTTGATTTGAGC 57.988 29.630 16.01 0.00 43.67 4.26
227 228 9.712305 TCAACTACCAAAACAATTTTCTTTTGA 57.288 25.926 11.70 0.00 38.95 2.69
231 232 9.719355 AGTTTCAACTACCAAAACAATTTTCTT 57.281 25.926 0.00 0.00 37.52 2.52
232 233 9.150348 CAGTTTCAACTACCAAAACAATTTTCT 57.850 29.630 0.00 0.00 37.08 2.52
233 234 8.931775 ACAGTTTCAACTACCAAAACAATTTTC 58.068 29.630 0.00 0.00 37.08 2.29
234 235 8.840833 ACAGTTTCAACTACCAAAACAATTTT 57.159 26.923 0.00 0.00 37.08 1.82
235 236 8.840833 AACAGTTTCAACTACCAAAACAATTT 57.159 26.923 0.00 0.00 37.08 1.82
236 237 8.716909 CAAACAGTTTCAACTACCAAAACAATT 58.283 29.630 0.00 0.00 37.08 2.32
237 238 8.091449 TCAAACAGTTTCAACTACCAAAACAAT 58.909 29.630 0.00 0.00 37.08 2.71
238 239 7.434492 TCAAACAGTTTCAACTACCAAAACAA 58.566 30.769 0.00 0.00 37.08 2.83
239 240 6.982852 TCAAACAGTTTCAACTACCAAAACA 58.017 32.000 0.00 0.00 37.08 2.83
240 241 7.061789 CACTCAAACAGTTTCAACTACCAAAAC 59.938 37.037 0.00 0.00 37.08 2.43
241 242 7.087639 CACTCAAACAGTTTCAACTACCAAAA 58.912 34.615 0.00 0.00 37.08 2.44
242 243 6.349777 CCACTCAAACAGTTTCAACTACCAAA 60.350 38.462 0.00 0.00 37.08 3.28
243 244 5.124776 CCACTCAAACAGTTTCAACTACCAA 59.875 40.000 0.00 0.00 37.08 3.67
244 245 4.638421 CCACTCAAACAGTTTCAACTACCA 59.362 41.667 0.00 0.00 37.08 3.25
245 246 4.638865 ACCACTCAAACAGTTTCAACTACC 59.361 41.667 0.00 0.00 37.08 3.18
246 247 5.813080 ACCACTCAAACAGTTTCAACTAC 57.187 39.130 0.00 0.00 37.08 2.73
247 248 7.925043 TTTACCACTCAAACAGTTTCAACTA 57.075 32.000 0.00 0.00 37.08 2.24
248 249 6.827586 TTTACCACTCAAACAGTTTCAACT 57.172 33.333 0.00 0.00 40.60 3.16
249 250 9.744468 ATATTTTACCACTCAAACAGTTTCAAC 57.256 29.630 0.00 0.00 30.26 3.18
311 312 9.857957 GTTTTGGGGAAATAATCGTACATTTAA 57.142 29.630 0.00 0.00 0.00 1.52
312 313 8.182881 CGTTTTGGGGAAATAATCGTACATTTA 58.817 33.333 0.00 0.00 0.00 1.40
313 314 7.030768 CGTTTTGGGGAAATAATCGTACATTT 58.969 34.615 0.00 0.00 0.00 2.32
314 315 6.151480 ACGTTTTGGGGAAATAATCGTACATT 59.849 34.615 0.00 0.00 0.00 2.71
315 316 5.648960 ACGTTTTGGGGAAATAATCGTACAT 59.351 36.000 0.00 0.00 0.00 2.29
316 317 5.002516 ACGTTTTGGGGAAATAATCGTACA 58.997 37.500 0.00 0.00 0.00 2.90
317 318 5.550232 ACGTTTTGGGGAAATAATCGTAC 57.450 39.130 0.00 0.00 0.00 3.67
318 319 7.862512 ATAACGTTTTGGGGAAATAATCGTA 57.137 32.000 5.91 0.00 0.00 3.43
319 320 6.762702 ATAACGTTTTGGGGAAATAATCGT 57.237 33.333 5.91 0.00 0.00 3.73
397 398 1.156736 ACGATCTTGCTCCCGTTTTG 58.843 50.000 0.00 0.00 30.41 2.44
415 416 8.186821 TGCTAGAAGGTAAGTACTTCGAATTAC 58.813 37.037 12.39 15.69 46.78 1.89
440 443 4.048504 CGTTTTTCCTTTTTAGGCAGGTG 58.951 43.478 0.00 0.00 0.00 4.00
471 474 4.883083 ACACATGTTGAGAGATACACGTT 58.117 39.130 0.00 0.00 0.00 3.99
928 932 3.580319 GGTGGGTGGGCTCCAAGT 61.580 66.667 0.00 0.00 34.18 3.16
1075 1079 6.257630 GTGTCAATTAGCACCAAACAACAAAT 59.742 34.615 0.00 0.00 0.00 2.32
1204 1208 5.625311 GCACGAGCATTAAAGCAATATAACC 59.375 40.000 5.36 0.00 41.58 2.85
1228 1232 5.106712 ACCACAAACAACGAACAGCTATATG 60.107 40.000 0.00 0.00 0.00 1.78
1241 1245 2.419324 TGTCAACCGTACCACAAACAAC 59.581 45.455 0.00 0.00 0.00 3.32
1246 1250 1.604755 GCATTGTCAACCGTACCACAA 59.395 47.619 0.00 0.00 33.42 3.33
1394 1398 8.648557 TTAACTGCACATGATAGTACTGATTC 57.351 34.615 5.39 0.54 0.00 2.52
1523 1527 6.347725 GCATTAAGATTGCCACGATAGGTTAG 60.348 42.308 0.00 0.00 35.44 2.34
1599 1603 2.616510 GTGCAACAGAGGAACAGCCTAT 60.617 50.000 0.00 0.00 42.49 2.57
1694 1698 8.732746 TCATCCTATTAACAAAGCTAAACCTC 57.267 34.615 0.00 0.00 0.00 3.85
1734 1738 4.957296 ACTTGGTTCGAGTTGATACTGTT 58.043 39.130 0.00 0.00 33.84 3.16
2135 2328 3.314635 GGAAGATAGTGGCTGCATTTCAG 59.685 47.826 0.50 0.00 45.62 3.02
2165 2358 4.226384 GGGAGGGCAATATTTTCTGGAAT 58.774 43.478 0.00 0.00 0.00 3.01
2229 2422 4.320057 GCAAACATATGCTAGCAGTGATCC 60.320 45.833 29.24 14.60 43.06 3.36
2316 2509 6.939730 TGCTACAGTTTCCAAAATCTACATGA 59.060 34.615 0.00 0.00 0.00 3.07
2532 2725 2.143925 GACCTGAACCGGAAAAGTCTG 58.856 52.381 9.46 1.31 0.00 3.51
3744 4258 7.762615 GCTGTATGTTTGTGACAAGGTATAGTA 59.237 37.037 0.00 0.00 42.62 1.82
3767 4281 4.742167 CACGAGTTCAGTTATATCTGGCTG 59.258 45.833 10.27 0.00 36.25 4.85
3778 4292 7.962964 TTTATGATCTTTCACGAGTTCAGTT 57.037 32.000 0.00 0.00 33.85 3.16
4221 4760 3.125487 ACTTAGTGTCGACTCATGACTCG 59.875 47.826 17.92 15.98 37.26 4.18
4291 4830 0.882484 TGCATGGTTTTCGAGTCGCA 60.882 50.000 7.92 0.00 0.00 5.10
4296 4835 1.159285 TCAGCTGCATGGTTTTCGAG 58.841 50.000 9.47 0.00 0.00 4.04
4403 4942 3.503363 GTGGCATGAGAGCACCGC 61.503 66.667 0.00 0.00 35.83 5.68
4495 5034 0.969894 CAAGTCCTCTCCGGTCACTT 59.030 55.000 0.00 0.90 31.81 3.16
4538 5077 2.045045 CGCTCAAGCCCAATCCCA 60.045 61.111 0.00 0.00 37.91 4.37
4688 5227 1.938577 CATTGCCGAGAAGACATCTGG 59.061 52.381 0.00 0.00 38.96 3.86
4735 5307 5.549742 AGCAAATCCAAAATTCTTCCACA 57.450 34.783 0.00 0.00 0.00 4.17
4809 5381 1.489649 AGGCTGAGCTGATGCAACTAT 59.510 47.619 3.72 0.00 42.74 2.12
5035 5699 1.825474 ACGGACTCCTGGTTACATGAG 59.175 52.381 0.00 0.00 42.79 2.90
5216 5883 6.401955 ACAAATAACAGCAACAACAACAAC 57.598 33.333 0.00 0.00 0.00 3.32
5217 5884 6.619446 GCAACAAATAACAGCAACAACAACAA 60.619 34.615 0.00 0.00 0.00 2.83
5218 5885 5.163913 GCAACAAATAACAGCAACAACAACA 60.164 36.000 0.00 0.00 0.00 3.33
5219 5886 5.163913 TGCAACAAATAACAGCAACAACAAC 60.164 36.000 0.00 0.00 31.42 3.32
5220 5887 4.931601 TGCAACAAATAACAGCAACAACAA 59.068 33.333 0.00 0.00 31.42 2.83
5388 6055 8.519492 TTGCTGAAATTTGCTTAATTACACTC 57.481 30.769 0.00 0.00 35.39 3.51
5406 6073 1.873591 GCTTCTCCGAGTTTTGCTGAA 59.126 47.619 0.00 0.00 0.00 3.02
5415 6082 1.867363 ATAAGTGGGCTTCTCCGAGT 58.133 50.000 0.00 0.00 36.22 4.18
5419 6086 6.835819 AAGTTTTAATAAGTGGGCTTCTCC 57.164 37.500 0.00 0.00 36.22 3.71
5513 6180 7.604657 TTCAAAAACTAGAGAGGAAGAGACT 57.395 36.000 0.00 0.00 0.00 3.24
5514 6181 7.095397 GCTTTCAAAAACTAGAGAGGAAGAGAC 60.095 40.741 0.00 0.00 0.00 3.36
5544 6211 4.553323 GACTGCCGTGAAACTAGAAACTA 58.447 43.478 0.00 0.00 31.75 2.24
5553 6220 0.028902 GTGTTGGACTGCCGTGAAAC 59.971 55.000 0.00 0.00 36.79 2.78
5742 6414 2.481289 AGGAGCAAGCTGGTTAAGAC 57.519 50.000 0.00 0.00 0.00 3.01
6041 6713 2.092323 GTCAACCAGCCCTCCATAAAC 58.908 52.381 0.00 0.00 0.00 2.01
6598 7273 8.408043 TGTCATTCTTAATGGACAACTGATTT 57.592 30.769 0.00 0.00 39.38 2.17
6834 7512 2.392662 GGATGGTCAGAGGATGAGTGA 58.607 52.381 0.00 0.00 39.07 3.41
6967 7645 4.188462 CACGGAGCAGACAAAATATGGTA 58.812 43.478 0.00 0.00 28.15 3.25
7108 7786 0.031449 GTATGAGCAGGACTCCTCGC 59.969 60.000 10.10 10.10 45.61 5.03
7217 7895 6.593978 CAAGAAACTGAAGAAATGTACCTCG 58.406 40.000 0.00 0.00 0.00 4.63
7256 7934 4.984161 GTGTCTAACGTGGCTACTTTTGTA 59.016 41.667 0.00 0.00 0.00 2.41
7257 7935 3.805971 GTGTCTAACGTGGCTACTTTTGT 59.194 43.478 0.00 0.00 0.00 2.83
7259 7937 4.062677 TGTGTCTAACGTGGCTACTTTT 57.937 40.909 0.00 0.00 0.00 2.27
7295 7973 9.704098 GACTAACGTTTATGGAAATCTTGATTC 57.296 33.333 5.91 0.00 0.00 2.52
7313 7991 6.704493 ACATTATTGTGTGAAGTGACTAACGT 59.296 34.615 0.00 0.00 33.85 3.99
7363 8041 1.153939 CAGGTCAGCGAGTCTTCCG 60.154 63.158 0.00 0.00 0.00 4.30
7373 8051 3.243002 GCAGAGCAAATTATCAGGTCAGC 60.243 47.826 0.00 0.00 35.70 4.26
7393 8071 2.009051 CATTTACCGTCATGCTCTGCA 58.991 47.619 0.00 0.00 44.86 4.41
7399 8077 1.331756 CCAGAGCATTTACCGTCATGC 59.668 52.381 7.31 7.31 45.30 4.06
7483 8161 0.967380 CCACAGGGCATGGAACTTCC 60.967 60.000 3.46 0.20 39.87 3.46
7746 8424 1.227853 GCTCACAACCCTTCCGTGT 60.228 57.895 0.00 0.00 32.42 4.49
7757 8435 2.676121 CCCGCCCAATGCTCACAA 60.676 61.111 0.00 0.00 38.05 3.33
8123 8809 5.062183 GCAGAGAAAAAGGTTCAACAACAAC 59.938 40.000 0.00 0.00 33.70 3.32
8163 8849 7.844493 ATAAATTCAGCATACCATGGTTCAT 57.156 32.000 25.38 8.75 39.29 2.57
8359 9213 9.290988 TCTTATGTTACTACCATCTTTTGCAAA 57.709 29.630 8.05 8.05 0.00 3.68
8374 9228 9.429359 GCAAGCTGTATCATATCTTATGTTACT 57.571 33.333 13.08 0.00 0.00 2.24
8375 9229 9.429359 AGCAAGCTGTATCATATCTTATGTTAC 57.571 33.333 0.00 8.04 0.00 2.50
8376 9230 9.645059 GAGCAAGCTGTATCATATCTTATGTTA 57.355 33.333 0.00 0.00 0.00 2.41
8511 11398 4.850680 TGTTGTTGAGGAAAACAGTAGGT 58.149 39.130 0.00 0.00 40.93 3.08
8540 11427 1.075674 TGGTTTTCCCCAAGCAGCA 60.076 52.632 0.00 0.00 39.73 4.41
8541 11428 1.667722 CTGGTTTTCCCCAAGCAGC 59.332 57.895 0.07 0.00 43.36 5.25
8557 11445 2.661675 CGTGACAATAACTCCGTGTCTG 59.338 50.000 4.81 0.00 41.80 3.51
8560 11448 2.925306 GCTCGTGACAATAACTCCGTGT 60.925 50.000 0.00 0.00 0.00 4.49
8563 11451 2.279582 AGCTCGTGACAATAACTCCG 57.720 50.000 0.00 0.00 0.00 4.63
8577 11465 3.637432 CTGCTCCTATGTAGAAAGCTCG 58.363 50.000 12.46 0.00 34.82 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.