Multiple sequence alignment - TraesCS6D01G152000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G152000 chr6D 100.000 4485 0 0 1 4485 125242060 125237576 0.000000e+00 8283.0
1 TraesCS6D01G152000 chr6D 95.276 254 11 1 4019 4272 37522073 37522325 7.610000e-108 401.0
2 TraesCS6D01G152000 chr6D 100.000 204 0 0 4681 4884 125237380 125237177 1.280000e-100 377.0
3 TraesCS6D01G152000 chr6D 96.569 204 7 0 4681 4884 68717771 68717568 6.060000e-89 339.0
4 TraesCS6D01G152000 chr6D 96.569 204 7 0 4681 4884 93629664 93629867 6.060000e-89 339.0
5 TraesCS6D01G152000 chr6D 93.299 194 2 2 4303 4485 439413295 439413102 4.820000e-70 276.0
6 TraesCS6D01G152000 chr6D 88.333 120 14 0 2285 2404 410395585 410395466 1.420000e-30 145.0
7 TraesCS6D01G152000 chr6D 88.136 118 14 0 2285 2402 85797610 85797493 1.830000e-29 141.0
8 TraesCS6D01G152000 chr6D 86.400 125 13 4 2285 2406 382078520 382078397 3.070000e-27 134.0
9 TraesCS6D01G152000 chr6D 87.826 115 11 1 2285 2399 87598596 87598707 1.100000e-26 132.0
10 TraesCS6D01G152000 chr6D 89.423 104 9 2 2285 2388 357869059 357868958 3.970000e-26 130.0
11 TraesCS6D01G152000 chr6D 84.426 122 19 0 2282 2403 115788328 115788449 2.390000e-23 121.0
12 TraesCS6D01G152000 chr6A 95.019 3493 121 28 551 4020 155252273 155255735 0.000000e+00 5437.0
13 TraesCS6D01G152000 chr6A 88.443 424 39 4 113 526 155251247 155251670 2.030000e-138 503.0
14 TraesCS6D01G152000 chr6A 87.805 123 15 0 2282 2404 17034191 17034313 1.420000e-30 145.0
15 TraesCS6D01G152000 chr6A 87.302 126 16 0 2282 2407 144266555 144266680 1.420000e-30 145.0
16 TraesCS6D01G152000 chr6A 91.919 99 7 1 3 101 405696289 405696386 2.370000e-28 137.0
17 TraesCS6D01G152000 chr6B 88.657 2248 125 51 116 2287 223445372 223443179 0.000000e+00 2619.0
18 TraesCS6D01G152000 chr6B 90.864 1620 90 18 2414 4020 223443180 223441606 0.000000e+00 2119.0
19 TraesCS6D01G152000 chr7D 88.912 478 37 6 4019 4483 104024206 104023732 4.240000e-160 575.0
20 TraesCS6D01G152000 chr7D 96.063 254 9 1 4019 4272 208557853 208558105 3.520000e-111 412.0
21 TraesCS6D01G152000 chr7D 93.478 92 5 1 9 100 43692500 43692410 8.530000e-28 135.0
22 TraesCS6D01G152000 chr1D 95.720 257 10 1 4019 4275 63367588 63367333 3.520000e-111 412.0
23 TraesCS6D01G152000 chr1D 98.039 204 4 0 4681 4884 58819638 58819435 6.010000e-94 355.0
24 TraesCS6D01G152000 chr1D 98.039 204 4 0 4681 4884 374395691 374395894 6.010000e-94 355.0
25 TraesCS6D01G152000 chr1D 97.059 204 6 0 4681 4884 235574775 235574978 1.300000e-90 344.0
26 TraesCS6D01G152000 chr1D 97.059 204 6 0 4681 4884 318125928 318126131 1.300000e-90 344.0
27 TraesCS6D01G152000 chr1D 96.569 204 7 0 4681 4884 206825563 206825766 6.060000e-89 339.0
28 TraesCS6D01G152000 chr1D 96.970 165 2 1 4304 4468 235573960 235574121 1.730000e-69 274.0
29 TraesCS6D01G152000 chr1D 93.264 193 2 2 4302 4483 318125244 318125436 1.730000e-69 274.0
30 TraesCS6D01G152000 chr1D 92.973 185 2 4 4302 4485 206825021 206825195 4.850000e-65 259.0
31 TraesCS6D01G152000 chr1D 87.970 133 14 2 2281 2413 465887141 465887271 6.550000e-34 156.0
32 TraesCS6D01G152000 chr1D 86.667 120 15 1 2285 2403 120536355 120536236 1.100000e-26 132.0
33 TraesCS6D01G152000 chr1D 84.553 123 19 0 2283 2405 448608248 448608370 6.640000e-24 122.0
34 TraesCS6D01G152000 chr1A 95.331 257 12 0 4019 4275 117904399 117904143 4.550000e-110 409.0
35 TraesCS6D01G152000 chr1A 90.000 130 11 2 2277 2405 30182780 30182652 3.020000e-37 167.0
36 TraesCS6D01G152000 chr1A 91.736 121 8 2 2285 2403 463825450 463825330 3.020000e-37 167.0
37 TraesCS6D01G152000 chr7B 95.331 257 11 1 4019 4275 693311360 693311105 1.640000e-109 407.0
38 TraesCS6D01G152000 chr7B 89.764 127 13 0 2273 2399 511462082 511462208 3.910000e-36 163.0
39 TraesCS6D01G152000 chr5D 95.331 257 11 1 4019 4275 70887100 70886845 1.640000e-109 407.0
40 TraesCS6D01G152000 chr5D 93.782 193 1 2 4302 4483 470489041 470488849 3.720000e-71 279.0
41 TraesCS6D01G152000 chr5D 88.800 125 13 1 2275 2399 450203160 450203283 8.470000e-33 152.0
42 TraesCS6D01G152000 chr2B 95.294 255 10 2 4019 4272 6518250 6518503 2.120000e-108 403.0
43 TraesCS6D01G152000 chr2B 93.548 93 6 0 8 100 283190374 283190466 6.590000e-29 139.0
44 TraesCS6D01G152000 chr2A 95.276 254 12 0 4019 4272 185357776 185358029 2.120000e-108 403.0
45 TraesCS6D01G152000 chr2D 95.276 254 11 1 4019 4272 78513048 78513300 7.610000e-108 401.0
46 TraesCS6D01G152000 chr2D 97.059 204 6 0 4681 4884 618887651 618887448 1.300000e-90 344.0
47 TraesCS6D01G152000 chr2D 92.386 197 4 2 4300 4485 618888098 618887902 2.240000e-68 270.0
48 TraesCS6D01G152000 chr2D 89.683 126 13 0 2278 2403 607675735 607675860 1.410000e-35 161.0
49 TraesCS6D01G152000 chrUn 96.569 204 7 0 4681 4884 105425559 105425762 6.060000e-89 339.0
50 TraesCS6D01G152000 chrUn 94.118 187 2 3 4302 4485 396803633 396803813 4.820000e-70 276.0
51 TraesCS6D01G152000 chrUn 87.736 106 12 1 2285 2390 276782017 276782121 6.640000e-24 122.0
52 TraesCS6D01G152000 chrUn 85.294 102 13 2 2290 2391 383744218 383744119 2.400000e-18 104.0
53 TraesCS6D01G152000 chrUn 88.235 85 7 3 2325 2408 267451435 267451517 1.120000e-16 99.0
54 TraesCS6D01G152000 chrUn 88.235 85 7 3 2325 2408 340254803 340254885 1.120000e-16 99.0
55 TraesCS6D01G152000 chrUn 81.301 123 13 2 2281 2403 316166006 316165894 1.870000e-14 91.6
56 TraesCS6D01G152000 chr3B 94.652 187 3 4 4302 4485 9898293 9898475 2.880000e-72 283.0
57 TraesCS6D01G152000 chr3B 90.625 96 4 4 9 100 622284183 622284089 6.640000e-24 122.0
58 TraesCS6D01G152000 chr3D 90.244 123 12 0 2283 2405 107672336 107672214 1.410000e-35 161.0
59 TraesCS6D01G152000 chr3D 81.159 69 12 1 583 651 51142425 51142492 2.000000e-03 54.7
60 TraesCS6D01G152000 chr4A 90.164 122 12 0 2285 2406 467246602 467246481 5.060000e-35 159.0
61 TraesCS6D01G152000 chr1B 90.678 118 10 1 2282 2399 332136157 332136273 6.550000e-34 156.0
62 TraesCS6D01G152000 chr1B 88.800 125 12 2 2278 2402 325262218 325262096 8.470000e-33 152.0
63 TraesCS6D01G152000 chr4D 88.889 126 12 2 2282 2406 109274969 109275093 2.350000e-33 154.0
64 TraesCS6D01G152000 chr4D 91.000 100 7 2 2 101 120070513 120070610 3.070000e-27 134.0
65 TraesCS6D01G152000 chr4B 88.618 123 12 2 2275 2396 592702017 592702138 1.100000e-31 148.0
66 TraesCS6D01G152000 chr5A 91.837 98 7 1 3 100 346536414 346536510 8.530000e-28 135.0
67 TraesCS6D01G152000 chr5B 87.209 86 10 1 13 98 468689660 468689576 4.020000e-16 97.1
68 TraesCS6D01G152000 chr5B 83.582 67 10 1 588 654 310059550 310059615 1.470000e-05 62.1
69 TraesCS6D01G152000 chr5B 85.455 55 5 3 602 654 604155787 604155840 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G152000 chr6D 125237177 125242060 4883 True 4330 8283 100.0000 1 4884 2 chr6D.!!$R7 4883
1 TraesCS6D01G152000 chr6A 155251247 155255735 4488 False 2970 5437 91.7310 113 4020 2 chr6A.!!$F4 3907
2 TraesCS6D01G152000 chr6B 223441606 223445372 3766 True 2369 2619 89.7605 116 4020 2 chr6B.!!$R1 3904
3 TraesCS6D01G152000 chr1D 235573960 235574978 1018 False 309 344 97.0145 4304 4884 2 chr1D.!!$F5 580
4 TraesCS6D01G152000 chr1D 318125244 318126131 887 False 309 344 95.1615 4302 4884 2 chr1D.!!$F6 582
5 TraesCS6D01G152000 chr1D 206825021 206825766 745 False 299 339 94.7710 4302 4884 2 chr1D.!!$F4 582
6 TraesCS6D01G152000 chr2D 618887448 618888098 650 True 307 344 94.7225 4300 4884 2 chr2D.!!$R1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 349 0.670546 CACCGTCATCACACCCTCAC 60.671 60.000 0.00 0.0 0.00 3.51 F
536 547 0.679505 TGAACTGTCGAAGGGTCAGG 59.320 55.000 2.96 0.0 34.02 3.86 F
614 1203 1.154093 CGGACGAGTGTATGTGCGT 60.154 57.895 0.00 0.0 43.62 5.24 F
773 1368 2.013400 CGCAGCTGTTCTAGAGAGAGA 58.987 52.381 16.64 0.0 31.77 3.10 F
1813 2450 0.971959 GCCCAATCCATCTTGCACCA 60.972 55.000 0.00 0.0 0.00 4.17 F
3015 3689 0.618458 TGGAGCCAAGCTTACGGATT 59.382 50.000 7.01 0.0 39.88 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 2032 0.586319 TGACGAAAAAGAAGCAGCGG 59.414 50.000 0.00 0.00 0.00 5.52 R
1644 2277 2.072298 GCTCACTGCTCCACAAGTAAG 58.928 52.381 0.00 0.00 38.95 2.34 R
1759 2396 3.982475 TGATCTTAATAGCCAGCACTCG 58.018 45.455 0.00 0.00 0.00 4.18 R
2180 2837 5.007385 ACCTTTGAGATATGTGTACCGAC 57.993 43.478 0.00 0.00 0.00 4.79 R
3072 3746 0.250901 GCCTTGCCTCACTCTTGGAA 60.251 55.000 0.00 0.00 0.00 3.53 R
4231 4914 0.035152 CTGCACCAACTAGGGATGCA 60.035 55.000 5.68 5.68 43.70 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.414295 GATCTCATTGATCTCATCTAAGAACAG 57.586 37.037 0.00 0.00 46.05 3.16
80 81 8.530804 TCTCATTGATCTCATCTAAGAACAGA 57.469 34.615 0.00 0.00 30.86 3.41
81 82 9.145442 TCTCATTGATCTCATCTAAGAACAGAT 57.855 33.333 0.00 0.00 35.60 2.90
82 83 9.414295 CTCATTGATCTCATCTAAGAACAGATC 57.586 37.037 9.68 9.68 39.91 2.75
83 84 8.921205 TCATTGATCTCATCTAAGAACAGATCA 58.079 33.333 13.45 13.45 44.93 2.92
84 85 9.713713 CATTGATCTCATCTAAGAACAGATCAT 57.286 33.333 16.47 8.24 45.55 2.45
85 86 9.713713 ATTGATCTCATCTAAGAACAGATCATG 57.286 33.333 16.47 0.00 45.55 3.07
86 87 8.247666 TGATCTCATCTAAGAACAGATCATGT 57.752 34.615 13.45 0.00 42.85 3.21
87 88 9.359653 TGATCTCATCTAAGAACAGATCATGTA 57.640 33.333 13.45 0.00 42.85 2.29
88 89 9.624697 GATCTCATCTAAGAACAGATCATGTAC 57.375 37.037 11.06 0.00 43.00 2.90
89 90 8.525290 TCTCATCTAAGAACAGATCATGTACA 57.475 34.615 0.00 0.00 43.00 2.90
90 91 8.971073 TCTCATCTAAGAACAGATCATGTACAA 58.029 33.333 0.00 0.00 43.00 2.41
91 92 9.247126 CTCATCTAAGAACAGATCATGTACAAG 57.753 37.037 0.00 0.00 43.00 3.16
92 93 8.753133 TCATCTAAGAACAGATCATGTACAAGT 58.247 33.333 0.00 0.00 43.00 3.16
93 94 9.029243 CATCTAAGAACAGATCATGTACAAGTC 57.971 37.037 0.00 0.00 43.00 3.01
94 95 8.354711 TCTAAGAACAGATCATGTACAAGTCT 57.645 34.615 0.00 0.72 43.00 3.24
95 96 8.807118 TCTAAGAACAGATCATGTACAAGTCTT 58.193 33.333 0.00 2.34 43.00 3.01
96 97 7.897575 AAGAACAGATCATGTACAAGTCTTC 57.102 36.000 0.00 0.14 43.00 2.87
97 98 6.402222 AGAACAGATCATGTACAAGTCTTCC 58.598 40.000 0.00 0.00 43.00 3.46
98 99 5.091261 ACAGATCATGTACAAGTCTTCCC 57.909 43.478 0.00 0.00 41.60 3.97
99 100 4.080863 ACAGATCATGTACAAGTCTTCCCC 60.081 45.833 0.00 0.00 41.60 4.81
100 101 4.080919 CAGATCATGTACAAGTCTTCCCCA 60.081 45.833 0.00 0.00 0.00 4.96
101 102 4.723789 AGATCATGTACAAGTCTTCCCCAT 59.276 41.667 0.00 0.00 0.00 4.00
102 103 5.905331 AGATCATGTACAAGTCTTCCCCATA 59.095 40.000 0.00 0.00 0.00 2.74
103 104 6.560304 AGATCATGTACAAGTCTTCCCCATAT 59.440 38.462 0.00 0.00 0.00 1.78
104 105 6.575244 TCATGTACAAGTCTTCCCCATATT 57.425 37.500 0.00 0.00 0.00 1.28
105 106 6.591935 TCATGTACAAGTCTTCCCCATATTC 58.408 40.000 0.00 0.00 0.00 1.75
106 107 6.157820 TCATGTACAAGTCTTCCCCATATTCA 59.842 38.462 0.00 0.00 0.00 2.57
107 108 6.575244 TGTACAAGTCTTCCCCATATTCAT 57.425 37.500 0.00 0.00 0.00 2.57
108 109 7.684317 TGTACAAGTCTTCCCCATATTCATA 57.316 36.000 0.00 0.00 0.00 2.15
109 110 8.275187 TGTACAAGTCTTCCCCATATTCATAT 57.725 34.615 0.00 0.00 0.00 1.78
110 111 9.387397 TGTACAAGTCTTCCCCATATTCATATA 57.613 33.333 0.00 0.00 0.00 0.86
111 112 9.877178 GTACAAGTCTTCCCCATATTCATATAG 57.123 37.037 0.00 0.00 0.00 1.31
131 132 1.564348 GGGGGCTACAAATCCTCTTCA 59.436 52.381 0.00 0.00 0.00 3.02
144 145 2.771943 TCCTCTTCAGTCACCACAACTT 59.228 45.455 0.00 0.00 0.00 2.66
165 166 7.921041 ACTTCTATCCATCACTCATCCTTTA 57.079 36.000 0.00 0.00 0.00 1.85
168 169 9.790344 CTTCTATCCATCACTCATCCTTTAAAT 57.210 33.333 0.00 0.00 0.00 1.40
254 256 0.774908 CCCTAAACAGGTGGTTGGGA 59.225 55.000 11.53 0.00 42.63 4.37
256 258 2.235891 CCTAAACAGGTGGTTGGGAAC 58.764 52.381 4.14 0.00 40.35 3.62
331 342 1.383523 TTTTGTGCACCGTCATCACA 58.616 45.000 15.69 0.00 38.76 3.58
338 349 0.670546 CACCGTCATCACACCCTCAC 60.671 60.000 0.00 0.00 0.00 3.51
380 391 1.152030 AGCCACCCTCAACCTCAGA 60.152 57.895 0.00 0.00 0.00 3.27
478 489 4.164988 AGAAGGGGATTCGATCTGTTTGAT 59.835 41.667 0.00 0.00 43.16 2.57
479 490 4.510167 AGGGGATTCGATCTGTTTGATT 57.490 40.909 0.00 0.00 35.14 2.57
492 503 7.278646 CGATCTGTTTGATTAAATGAGTCCTCA 59.721 37.037 0.00 0.00 38.63 3.86
505 516 4.579869 TGAGTCCTCAGATTTTTAGCCAC 58.420 43.478 0.00 0.00 34.14 5.01
522 533 2.086869 CCACGAGGCAAATGATGAACT 58.913 47.619 0.00 0.00 0.00 3.01
534 545 1.967779 TGATGAACTGTCGAAGGGTCA 59.032 47.619 8.70 8.70 0.00 4.02
536 547 0.679505 TGAACTGTCGAAGGGTCAGG 59.320 55.000 2.96 0.00 34.02 3.86
557 1146 7.272978 TCAGGATGATAAGGCACTAGTTTAAC 58.727 38.462 0.00 0.00 42.56 2.01
596 1185 5.911280 GCAAGTCATATGCATGTGTTCATAC 59.089 40.000 21.13 12.49 43.29 2.39
613 1202 3.675485 CGGACGAGTGTATGTGCG 58.325 61.111 0.00 0.00 43.16 5.34
614 1203 1.154093 CGGACGAGTGTATGTGCGT 60.154 57.895 0.00 0.00 43.62 5.24
623 1212 3.511699 AGTGTATGTGCGTGTATGTGAG 58.488 45.455 0.00 0.00 0.00 3.51
624 1213 2.029244 GTGTATGTGCGTGTATGTGAGC 59.971 50.000 0.00 0.00 0.00 4.26
632 1221 5.757808 TGTGCGTGTATGTGAGCATTTATAT 59.242 36.000 0.00 0.00 41.88 0.86
677 1266 4.460263 ACAAGTCAAAGGTAGCATGAACA 58.540 39.130 0.00 0.00 0.00 3.18
732 1327 4.860907 CGTACTGCGTATTAGGTGAAGTTT 59.139 41.667 0.00 0.00 35.54 2.66
773 1368 2.013400 CGCAGCTGTTCTAGAGAGAGA 58.987 52.381 16.64 0.00 31.77 3.10
774 1369 2.032054 CGCAGCTGTTCTAGAGAGAGAG 59.968 54.545 16.64 0.00 31.77 3.20
775 1370 3.278574 GCAGCTGTTCTAGAGAGAGAGA 58.721 50.000 16.64 0.00 31.77 3.10
776 1371 3.313526 GCAGCTGTTCTAGAGAGAGAGAG 59.686 52.174 16.64 0.00 31.77 3.20
777 1372 4.769688 CAGCTGTTCTAGAGAGAGAGAGA 58.230 47.826 5.25 0.00 31.77 3.10
778 1373 4.813161 CAGCTGTTCTAGAGAGAGAGAGAG 59.187 50.000 5.25 0.00 31.77 3.20
779 1374 4.716784 AGCTGTTCTAGAGAGAGAGAGAGA 59.283 45.833 5.28 0.00 31.77 3.10
780 1375 5.053145 GCTGTTCTAGAGAGAGAGAGAGAG 58.947 50.000 5.28 0.00 31.77 3.20
781 1376 5.163405 GCTGTTCTAGAGAGAGAGAGAGAGA 60.163 48.000 5.28 0.00 31.77 3.10
782 1377 6.471233 TGTTCTAGAGAGAGAGAGAGAGAG 57.529 45.833 0.00 0.00 31.77 3.20
783 1378 6.194967 TGTTCTAGAGAGAGAGAGAGAGAGA 58.805 44.000 0.00 0.00 31.77 3.10
784 1379 6.322456 TGTTCTAGAGAGAGAGAGAGAGAGAG 59.678 46.154 0.00 0.00 31.77 3.20
936 1555 8.864087 TGATTCCATATGATCCGATCCTAATAG 58.136 37.037 3.65 0.00 0.00 1.73
1037 1656 2.698797 GTCCTCCGTTGGATTCCATAGA 59.301 50.000 6.15 3.19 38.52 1.98
1049 1669 8.606830 GTTGGATTCCATAGAAGGTAGGATTAT 58.393 37.037 6.15 0.00 34.86 1.28
1126 1749 6.772716 TCAGCCCATATTGAAATAGTTCCTTC 59.227 38.462 0.00 0.00 32.28 3.46
1339 1962 4.618920 GGTAGAGACCCTTTTCTGAACA 57.381 45.455 0.00 0.00 40.23 3.18
1340 1963 4.570930 GGTAGAGACCCTTTTCTGAACAG 58.429 47.826 0.00 0.00 40.23 3.16
1408 2032 3.729004 GCAAACGGCATAGCGTATC 57.271 52.632 0.00 0.00 43.97 2.24
1447 2073 4.013728 TCATTTGGCCGCTTTGTTACTAT 58.986 39.130 0.00 0.00 0.00 2.12
1460 2086 8.062448 CGCTTTGTTACTATTCCAGTTAATAGC 58.938 37.037 0.00 0.00 41.29 2.97
1510 2136 2.285083 GTGGTAAATATCACTGCCGCA 58.715 47.619 0.00 0.00 34.54 5.69
1568 2194 3.862845 GTGGTAGTGTTGTTTGGCAAAAG 59.137 43.478 15.29 0.00 39.03 2.27
1587 2220 9.181805 GGCAAAAGCTAGTTAGTTTCTAAAAAG 57.818 33.333 0.00 0.00 0.00 2.27
1644 2277 2.039327 GTGTGACACGAGACTGAGAC 57.961 55.000 0.00 0.00 0.00 3.36
1682 2319 7.219535 GCAGTGAGCACTATTGTAAATGAATTG 59.780 37.037 2.36 0.00 44.79 2.32
1686 2323 5.363580 AGCACTATTGTAAATGAATTGGGGG 59.636 40.000 0.00 0.00 0.00 5.40
1813 2450 0.971959 GCCCAATCCATCTTGCACCA 60.972 55.000 0.00 0.00 0.00 4.17
2005 2662 6.263392 CAGCCTGATTCTCATCATTTTCTGAT 59.737 38.462 0.00 0.00 45.78 2.90
2180 2837 1.581934 TTCTGGCGTTCACAGAAGTG 58.418 50.000 3.94 0.00 46.70 3.16
2311 2979 3.179830 CTCAGTCCCGAATTACTTGTCG 58.820 50.000 0.00 0.00 37.01 4.35
2320 2988 4.334443 CGAATTACTTGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2333 3001 6.980397 GTCGCAGAAATGGATAAAATTGGATT 59.020 34.615 0.00 0.00 39.69 3.01
2387 3055 7.116233 ACATCCATTTTTGCGACAAGTAATTTC 59.884 33.333 0.00 0.00 0.00 2.17
2392 3060 2.756829 TGCGACAAGTAATTTCGGACA 58.243 42.857 8.68 0.00 33.28 4.02
2397 3065 3.933332 GACAAGTAATTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2486 3156 8.478877 AGGATAGAACACACTTACCTTCATTAG 58.521 37.037 0.00 0.00 0.00 1.73
2504 3174 7.155655 TCATTAGCATATCAGTTTTGTTGCA 57.844 32.000 0.00 0.00 32.30 4.08
2872 3545 6.266168 TGTATACCTTGCAAAAACTCCATG 57.734 37.500 0.00 0.00 0.00 3.66
2889 3562 4.870636 TCCATGAAGGGCATTTACAATCT 58.129 39.130 0.00 0.00 38.24 2.40
2932 3605 9.212641 CATTCATGAACTCCATATTACTACCAG 57.787 37.037 11.07 0.00 33.31 4.00
3015 3689 0.618458 TGGAGCCAAGCTTACGGATT 59.382 50.000 7.01 0.00 39.88 3.01
3033 3707 6.071984 ACGGATTGTCTCTAATCATCCTAGT 58.928 40.000 0.00 0.00 38.51 2.57
3054 3728 1.549203 ATGCCGGAAAACAAGCATCT 58.451 45.000 5.05 0.00 42.05 2.90
3068 3742 4.394300 ACAAGCATCTAACTCACATTCTGC 59.606 41.667 0.00 0.00 0.00 4.26
3072 3746 5.128499 AGCATCTAACTCACATTCTGCTAGT 59.872 40.000 0.00 0.00 36.98 2.57
3117 3791 5.580691 GCCCCAAGATTGCAAATTAAGTAAC 59.419 40.000 1.71 0.00 0.00 2.50
3173 3847 8.964533 ATACATATAACATGTTCCTCCTCTCT 57.035 34.615 15.85 0.00 33.76 3.10
3273 3947 1.681793 TCTAGCAGCGACCCTTATGTC 59.318 52.381 0.00 0.00 0.00 3.06
3308 3982 3.555956 GGACAACAGGTAATCACATAGCG 59.444 47.826 0.00 0.00 0.00 4.26
3310 3984 4.433615 ACAACAGGTAATCACATAGCGAG 58.566 43.478 0.00 0.00 0.00 5.03
3330 4006 4.645956 GAGCTTGTTGACATCGAGATTTG 58.354 43.478 5.12 0.00 0.00 2.32
3348 4026 4.771590 TTTGGACATTCTTGCAGTCATC 57.228 40.909 5.52 0.00 34.04 2.92
3520 4200 7.224297 TGAGAACCTAGCACTAAGAAACAAAT 58.776 34.615 0.00 0.00 0.00 2.32
3536 4216 6.921857 AGAAACAAATGCAAAACTCAGATCTG 59.078 34.615 17.07 17.07 0.00 2.90
3547 4227 6.497624 AAACTCAGATCTGATCTTATGGCT 57.502 37.500 25.30 1.07 39.13 4.75
3619 4299 2.165167 CAGCAAGTGTTGGACCATGAT 58.835 47.619 0.00 0.00 0.00 2.45
3721 4401 2.959071 GAGCTGCTCGGCGACATC 60.959 66.667 14.68 5.37 37.29 3.06
3772 4452 2.572284 GCTCTAACCGCCGACAGT 59.428 61.111 0.00 0.00 0.00 3.55
3812 4492 0.397941 CAAGGTGAAGCAGGAGGTCA 59.602 55.000 0.00 0.00 0.00 4.02
3814 4494 0.472734 AGGTGAAGCAGGAGGTCACT 60.473 55.000 3.32 0.00 0.00 3.41
4009 4692 8.502105 AGTAGTAGGCAATAACAAACATAACC 57.498 34.615 0.00 0.00 0.00 2.85
4020 4703 5.438761 ACAAACATAACCTGAACTCAAGC 57.561 39.130 0.00 0.00 0.00 4.01
4021 4704 4.278419 ACAAACATAACCTGAACTCAAGCC 59.722 41.667 0.00 0.00 0.00 4.35
4022 4705 4.373156 AACATAACCTGAACTCAAGCCT 57.627 40.909 0.00 0.00 0.00 4.58
4023 4706 4.373156 ACATAACCTGAACTCAAGCCTT 57.627 40.909 0.00 0.00 0.00 4.35
4024 4707 4.074970 ACATAACCTGAACTCAAGCCTTG 58.925 43.478 0.00 0.00 0.00 3.61
4025 4708 1.986882 AACCTGAACTCAAGCCTTGG 58.013 50.000 4.30 0.00 0.00 3.61
4026 4709 0.538287 ACCTGAACTCAAGCCTTGGC 60.538 55.000 4.30 2.97 0.00 4.52
4027 4710 0.251077 CCTGAACTCAAGCCTTGGCT 60.251 55.000 8.56 8.56 0.00 4.75
4028 4711 1.163554 CTGAACTCAAGCCTTGGCTC 58.836 55.000 15.10 2.12 0.00 4.70
4029 4712 0.767375 TGAACTCAAGCCTTGGCTCT 59.233 50.000 15.10 2.82 0.00 4.09
4030 4713 1.163554 GAACTCAAGCCTTGGCTCTG 58.836 55.000 15.10 14.23 0.00 3.35
4031 4714 0.475906 AACTCAAGCCTTGGCTCTGT 59.524 50.000 15.10 10.75 0.00 3.41
4032 4715 0.250640 ACTCAAGCCTTGGCTCTGTG 60.251 55.000 15.10 16.00 0.00 3.66
4033 4716 0.959372 CTCAAGCCTTGGCTCTGTGG 60.959 60.000 15.10 8.94 0.00 4.17
4034 4717 1.228367 CAAGCCTTGGCTCTGTGGT 60.228 57.895 15.10 0.00 0.00 4.16
4035 4718 0.825010 CAAGCCTTGGCTCTGTGGTT 60.825 55.000 15.10 0.00 0.00 3.67
4036 4719 0.825010 AAGCCTTGGCTCTGTGGTTG 60.825 55.000 15.10 0.00 0.00 3.77
4037 4720 2.270986 GCCTTGGCTCTGTGGTTGG 61.271 63.158 4.11 0.00 0.00 3.77
4038 4721 1.604593 CCTTGGCTCTGTGGTTGGG 60.605 63.158 0.00 0.00 0.00 4.12
4039 4722 2.203480 TTGGCTCTGTGGTTGGGC 60.203 61.111 0.00 0.00 0.00 5.36
4040 4723 2.981914 CTTGGCTCTGTGGTTGGGCA 62.982 60.000 0.00 0.00 0.00 5.36
4041 4724 2.036256 GGCTCTGTGGTTGGGCAT 59.964 61.111 0.00 0.00 0.00 4.40
4042 4725 2.345760 GGCTCTGTGGTTGGGCATG 61.346 63.158 0.00 0.00 0.00 4.06
4043 4726 2.998279 GCTCTGTGGTTGGGCATGC 61.998 63.158 9.90 9.90 0.00 4.06
4044 4727 2.672651 TCTGTGGTTGGGCATGCG 60.673 61.111 12.44 0.00 0.00 4.73
4045 4728 3.751246 CTGTGGTTGGGCATGCGG 61.751 66.667 12.44 0.00 0.00 5.69
4046 4729 4.594854 TGTGGTTGGGCATGCGGT 62.595 61.111 12.44 0.00 0.00 5.68
4047 4730 3.302344 GTGGTTGGGCATGCGGTT 61.302 61.111 12.44 0.00 0.00 4.44
4048 4731 3.301554 TGGTTGGGCATGCGGTTG 61.302 61.111 12.44 0.00 0.00 3.77
4049 4732 3.302344 GGTTGGGCATGCGGTTGT 61.302 61.111 12.44 0.00 0.00 3.32
4050 4733 2.049248 GTTGGGCATGCGGTTGTG 60.049 61.111 12.44 0.00 0.00 3.33
4051 4734 3.988525 TTGGGCATGCGGTTGTGC 61.989 61.111 12.44 0.00 40.55 4.57
4058 4741 2.112087 TGCGGTTGTGCAGCCTAA 59.888 55.556 3.70 0.00 40.62 2.69
4059 4742 2.258013 TGCGGTTGTGCAGCCTAAC 61.258 57.895 3.70 0.00 40.62 2.34
4060 4743 2.860293 CGGTTGTGCAGCCTAACG 59.140 61.111 3.70 0.00 0.00 3.18
4061 4744 1.666553 CGGTTGTGCAGCCTAACGA 60.667 57.895 3.70 0.00 0.00 3.85
4062 4745 1.866925 GGTTGTGCAGCCTAACGAC 59.133 57.895 0.00 0.00 0.00 4.34
4063 4746 1.574702 GGTTGTGCAGCCTAACGACC 61.575 60.000 5.25 5.25 42.26 4.79
4064 4747 1.302192 TTGTGCAGCCTAACGACCC 60.302 57.895 0.00 0.00 0.00 4.46
4065 4748 2.813908 GTGCAGCCTAACGACCCG 60.814 66.667 0.00 0.00 0.00 5.28
4066 4749 2.992689 TGCAGCCTAACGACCCGA 60.993 61.111 0.00 0.00 0.00 5.14
4067 4750 2.202756 GCAGCCTAACGACCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
4068 4751 3.003113 GCAGCCTAACGACCCGAGT 62.003 63.158 0.00 0.00 0.00 4.18
4069 4752 1.590147 CAGCCTAACGACCCGAGTT 59.410 57.895 0.00 0.00 35.75 3.01
4070 4753 0.458025 CAGCCTAACGACCCGAGTTC 60.458 60.000 0.00 0.00 33.42 3.01
4071 4754 0.896940 AGCCTAACGACCCGAGTTCA 60.897 55.000 0.00 0.00 33.42 3.18
4072 4755 0.037975 GCCTAACGACCCGAGTTCAA 60.038 55.000 0.00 0.00 33.42 2.69
4073 4756 1.405121 GCCTAACGACCCGAGTTCAAT 60.405 52.381 0.00 0.00 33.42 2.57
4074 4757 2.933928 GCCTAACGACCCGAGTTCAATT 60.934 50.000 0.00 0.00 33.42 2.32
4075 4758 2.928116 CCTAACGACCCGAGTTCAATTC 59.072 50.000 0.00 0.00 33.42 2.17
4076 4759 1.804601 AACGACCCGAGTTCAATTCC 58.195 50.000 0.00 0.00 0.00 3.01
4077 4760 0.974383 ACGACCCGAGTTCAATTCCT 59.026 50.000 0.00 0.00 0.00 3.36
4078 4761 2.173519 ACGACCCGAGTTCAATTCCTA 58.826 47.619 0.00 0.00 0.00 2.94
4079 4762 2.165845 ACGACCCGAGTTCAATTCCTAG 59.834 50.000 0.00 0.00 0.00 3.02
4080 4763 2.426024 CGACCCGAGTTCAATTCCTAGA 59.574 50.000 0.00 0.00 0.00 2.43
4081 4764 3.119245 CGACCCGAGTTCAATTCCTAGAA 60.119 47.826 0.00 0.00 0.00 2.10
4082 4765 4.441634 CGACCCGAGTTCAATTCCTAGAAT 60.442 45.833 0.00 0.00 0.00 2.40
4083 4766 5.429130 GACCCGAGTTCAATTCCTAGAATT 58.571 41.667 0.00 0.00 0.00 2.17
4084 4767 5.186198 ACCCGAGTTCAATTCCTAGAATTG 58.814 41.667 19.37 19.37 38.60 2.32
4085 4768 5.045869 ACCCGAGTTCAATTCCTAGAATTGA 60.046 40.000 22.54 22.54 42.82 2.57
4086 4769 5.294552 CCCGAGTTCAATTCCTAGAATTGAC 59.705 44.000 24.95 20.09 43.81 3.18
4087 4770 5.874810 CCGAGTTCAATTCCTAGAATTGACA 59.125 40.000 24.95 16.29 43.81 3.58
4088 4771 6.036517 CCGAGTTCAATTCCTAGAATTGACAG 59.963 42.308 24.95 17.52 43.81 3.51
4089 4772 6.036517 CGAGTTCAATTCCTAGAATTGACAGG 59.963 42.308 24.95 14.49 43.81 4.00
4090 4773 6.784031 AGTTCAATTCCTAGAATTGACAGGT 58.216 36.000 24.95 11.97 43.81 4.00
4091 4774 6.656693 AGTTCAATTCCTAGAATTGACAGGTG 59.343 38.462 24.95 4.88 43.81 4.00
4092 4775 6.373005 TCAATTCCTAGAATTGACAGGTGA 57.627 37.500 22.54 5.42 40.53 4.02
4093 4776 6.962182 TCAATTCCTAGAATTGACAGGTGAT 58.038 36.000 22.54 0.00 40.53 3.06
4094 4777 6.825213 TCAATTCCTAGAATTGACAGGTGATG 59.175 38.462 22.54 1.65 40.53 3.07
4096 4779 6.867519 TTCCTAGAATTGACAGGTGATGTA 57.132 37.500 0.00 0.00 44.17 2.29
4097 4780 6.222038 TCCTAGAATTGACAGGTGATGTAC 57.778 41.667 0.00 0.00 44.17 2.90
4098 4781 5.719563 TCCTAGAATTGACAGGTGATGTACA 59.280 40.000 0.00 0.00 44.17 2.90
4099 4782 6.384015 TCCTAGAATTGACAGGTGATGTACAT 59.616 38.462 8.43 8.43 44.17 2.29
4100 4783 6.481313 CCTAGAATTGACAGGTGATGTACATG 59.519 42.308 14.43 2.05 44.17 3.21
4101 4784 5.188434 AGAATTGACAGGTGATGTACATGG 58.812 41.667 14.43 0.06 45.00 3.66
4102 4785 3.348647 TTGACAGGTGATGTACATGGG 57.651 47.619 14.43 0.41 45.00 4.00
4103 4786 2.265367 TGACAGGTGATGTACATGGGT 58.735 47.619 14.43 3.74 45.00 4.51
4104 4787 2.642311 TGACAGGTGATGTACATGGGTT 59.358 45.455 14.43 0.00 45.00 4.11
4105 4788 3.073798 TGACAGGTGATGTACATGGGTTT 59.926 43.478 14.43 0.00 45.00 3.27
4106 4789 4.079253 GACAGGTGATGTACATGGGTTTT 58.921 43.478 14.43 0.00 45.00 2.43
4107 4790 4.079253 ACAGGTGATGTACATGGGTTTTC 58.921 43.478 14.43 0.00 45.00 2.29
4108 4791 3.443681 CAGGTGATGTACATGGGTTTTCC 59.556 47.826 14.43 4.99 37.43 3.13
4124 4807 6.560003 GGTTTTCCCCCATTTATTGAAGAT 57.440 37.500 0.00 0.00 0.00 2.40
4125 4808 6.582636 GGTTTTCCCCCATTTATTGAAGATC 58.417 40.000 0.00 0.00 0.00 2.75
4126 4809 6.156083 GGTTTTCCCCCATTTATTGAAGATCA 59.844 38.462 0.00 0.00 0.00 2.92
4127 4810 7.310983 GGTTTTCCCCCATTTATTGAAGATCAA 60.311 37.037 0.00 0.00 41.09 2.57
4128 4811 7.422465 TTTCCCCCATTTATTGAAGATCAAG 57.578 36.000 0.00 0.00 40.05 3.02
4129 4812 6.091076 TCCCCCATTTATTGAAGATCAAGT 57.909 37.500 0.00 0.00 40.05 3.16
4130 4813 6.502138 TCCCCCATTTATTGAAGATCAAGTT 58.498 36.000 0.00 0.00 40.05 2.66
4131 4814 6.959366 TCCCCCATTTATTGAAGATCAAGTTT 59.041 34.615 0.00 0.00 40.05 2.66
4132 4815 7.043565 CCCCCATTTATTGAAGATCAAGTTTG 58.956 38.462 0.00 0.00 40.05 2.93
4133 4816 7.043565 CCCCATTTATTGAAGATCAAGTTTGG 58.956 38.462 0.00 3.90 40.05 3.28
4134 4817 7.310609 CCCCATTTATTGAAGATCAAGTTTGGT 60.311 37.037 0.00 0.00 40.05 3.67
4135 4818 7.546667 CCCATTTATTGAAGATCAAGTTTGGTG 59.453 37.037 0.00 0.00 40.05 4.17
4136 4819 8.090214 CCATTTATTGAAGATCAAGTTTGGTGT 58.910 33.333 0.00 0.00 40.05 4.16
4137 4820 8.918658 CATTTATTGAAGATCAAGTTTGGTGTG 58.081 33.333 0.00 0.00 40.05 3.82
4138 4821 7.581213 TTATTGAAGATCAAGTTTGGTGTGT 57.419 32.000 0.00 0.00 40.05 3.72
4139 4822 4.898829 TGAAGATCAAGTTTGGTGTGTG 57.101 40.909 0.00 0.00 0.00 3.82
4140 4823 3.631686 TGAAGATCAAGTTTGGTGTGTGG 59.368 43.478 0.00 0.00 0.00 4.17
4141 4824 3.297134 AGATCAAGTTTGGTGTGTGGT 57.703 42.857 0.00 0.00 0.00 4.16
4142 4825 2.951642 AGATCAAGTTTGGTGTGTGGTG 59.048 45.455 0.00 0.00 0.00 4.17
4143 4826 1.468985 TCAAGTTTGGTGTGTGGTGG 58.531 50.000 0.00 0.00 0.00 4.61
4144 4827 1.004862 TCAAGTTTGGTGTGTGGTGGA 59.995 47.619 0.00 0.00 0.00 4.02
4145 4828 1.821753 CAAGTTTGGTGTGTGGTGGAA 59.178 47.619 0.00 0.00 0.00 3.53
4146 4829 2.430332 CAAGTTTGGTGTGTGGTGGAAT 59.570 45.455 0.00 0.00 0.00 3.01
4147 4830 2.306847 AGTTTGGTGTGTGGTGGAATC 58.693 47.619 0.00 0.00 0.00 2.52
4148 4831 2.028130 GTTTGGTGTGTGGTGGAATCA 58.972 47.619 0.00 0.00 0.00 2.57
4149 4832 1.686355 TTGGTGTGTGGTGGAATCAC 58.314 50.000 0.00 0.00 42.91 3.06
4150 4833 0.843309 TGGTGTGTGGTGGAATCACT 59.157 50.000 0.00 0.00 43.17 3.41
4151 4834 1.202758 TGGTGTGTGGTGGAATCACTC 60.203 52.381 0.00 0.00 43.17 3.51
4152 4835 1.202758 GGTGTGTGGTGGAATCACTCA 60.203 52.381 0.00 0.00 43.17 3.41
4153 4836 2.553028 GGTGTGTGGTGGAATCACTCAT 60.553 50.000 0.00 0.00 43.17 2.90
4154 4837 2.744202 GTGTGTGGTGGAATCACTCATC 59.256 50.000 0.00 0.00 43.17 2.92
4155 4838 2.371510 TGTGTGGTGGAATCACTCATCA 59.628 45.455 0.00 0.00 43.17 3.07
4156 4839 3.181446 TGTGTGGTGGAATCACTCATCAA 60.181 43.478 0.00 0.00 43.17 2.57
4157 4840 3.820467 GTGTGGTGGAATCACTCATCAAA 59.180 43.478 0.00 0.00 43.17 2.69
4158 4841 4.278170 GTGTGGTGGAATCACTCATCAAAA 59.722 41.667 0.00 0.00 43.17 2.44
4159 4842 4.892345 TGTGGTGGAATCACTCATCAAAAA 59.108 37.500 0.00 0.00 43.17 1.94
4205 4888 8.655935 AAAAATTCTGAGGACCATGTTTATCT 57.344 30.769 0.00 0.00 0.00 1.98
4206 4889 8.655935 AAAATTCTGAGGACCATGTTTATCTT 57.344 30.769 0.00 0.00 0.00 2.40
4207 4890 7.636150 AATTCTGAGGACCATGTTTATCTTG 57.364 36.000 0.00 0.00 0.00 3.02
4208 4891 5.102953 TCTGAGGACCATGTTTATCTTGG 57.897 43.478 0.00 0.00 44.08 3.61
4228 4911 7.262772 TCTTGGTACTCATACTAAAATGGTCG 58.737 38.462 0.00 0.00 32.02 4.79
4229 4912 6.534475 TGGTACTCATACTAAAATGGTCGT 57.466 37.500 0.00 0.00 0.00 4.34
4230 4913 7.643569 TGGTACTCATACTAAAATGGTCGTA 57.356 36.000 0.00 0.00 0.00 3.43
4231 4914 8.241497 TGGTACTCATACTAAAATGGTCGTAT 57.759 34.615 0.00 0.00 0.00 3.06
4232 4915 8.139350 TGGTACTCATACTAAAATGGTCGTATG 58.861 37.037 0.00 0.00 40.13 2.39
4233 4916 7.115947 GGTACTCATACTAAAATGGTCGTATGC 59.884 40.741 0.00 0.00 39.17 3.14
4234 4917 6.578944 ACTCATACTAAAATGGTCGTATGCA 58.421 36.000 0.00 0.00 39.17 3.96
4235 4918 7.217200 ACTCATACTAAAATGGTCGTATGCAT 58.783 34.615 3.79 3.79 39.17 3.96
4236 4919 7.385205 ACTCATACTAAAATGGTCGTATGCATC 59.615 37.037 0.19 0.00 39.17 3.91
4237 4920 6.649141 TCATACTAAAATGGTCGTATGCATCC 59.351 38.462 0.19 0.00 39.17 3.51
4238 4921 4.134563 ACTAAAATGGTCGTATGCATCCC 58.865 43.478 0.19 0.00 0.00 3.85
4239 4922 3.297134 AAAATGGTCGTATGCATCCCT 57.703 42.857 0.19 0.00 0.00 4.20
4240 4923 4.431416 AAAATGGTCGTATGCATCCCTA 57.569 40.909 0.19 0.00 0.00 3.53
4241 4924 3.685139 AATGGTCGTATGCATCCCTAG 57.315 47.619 0.19 0.00 0.00 3.02
4242 4925 2.082140 TGGTCGTATGCATCCCTAGT 57.918 50.000 0.19 0.00 0.00 2.57
4243 4926 2.394632 TGGTCGTATGCATCCCTAGTT 58.605 47.619 0.19 0.00 0.00 2.24
4244 4927 2.102420 TGGTCGTATGCATCCCTAGTTG 59.898 50.000 0.19 0.00 0.00 3.16
4245 4928 2.548067 GGTCGTATGCATCCCTAGTTGG 60.548 54.545 0.19 0.00 0.00 3.77
4246 4929 2.102588 GTCGTATGCATCCCTAGTTGGT 59.897 50.000 0.19 0.00 0.00 3.67
4247 4930 2.102420 TCGTATGCATCCCTAGTTGGTG 59.898 50.000 0.19 0.00 0.00 4.17
4248 4931 2.222027 GTATGCATCCCTAGTTGGTGC 58.778 52.381 0.19 7.60 34.81 5.01
4249 4932 0.625316 ATGCATCCCTAGTTGGTGCA 59.375 50.000 16.90 16.90 42.44 4.57
4250 4933 0.035152 TGCATCCCTAGTTGGTGCAG 60.035 55.000 12.10 0.00 37.44 4.41
4251 4934 0.253044 GCATCCCTAGTTGGTGCAGA 59.747 55.000 9.27 0.00 34.56 4.26
4252 4935 1.745141 GCATCCCTAGTTGGTGCAGAG 60.745 57.143 9.27 0.00 34.56 3.35
4253 4936 1.134280 CATCCCTAGTTGGTGCAGAGG 60.134 57.143 0.00 0.00 0.00 3.69
4254 4937 1.078143 CCCTAGTTGGTGCAGAGGC 60.078 63.158 0.00 0.00 41.68 4.70
4255 4938 1.078143 CCTAGTTGGTGCAGAGGCC 60.078 63.158 0.00 0.00 40.13 5.19
4256 4939 1.448540 CTAGTTGGTGCAGAGGCCG 60.449 63.158 0.00 0.00 40.13 6.13
4257 4940 2.859273 CTAGTTGGTGCAGAGGCCGG 62.859 65.000 0.00 0.00 40.13 6.13
4262 4945 4.785453 GTGCAGAGGCCGGGGAAG 62.785 72.222 2.18 0.00 40.13 3.46
4264 4947 3.081409 GCAGAGGCCGGGGAAGTA 61.081 66.667 2.18 0.00 0.00 2.24
4265 4948 2.666098 GCAGAGGCCGGGGAAGTAA 61.666 63.158 2.18 0.00 0.00 2.24
4266 4949 1.988015 CAGAGGCCGGGGAAGTAAA 59.012 57.895 2.18 0.00 0.00 2.01
4267 4950 0.326927 CAGAGGCCGGGGAAGTAAAA 59.673 55.000 2.18 0.00 0.00 1.52
4268 4951 1.064685 CAGAGGCCGGGGAAGTAAAAT 60.065 52.381 2.18 0.00 0.00 1.82
4269 4952 1.639108 AGAGGCCGGGGAAGTAAAATT 59.361 47.619 2.18 0.00 0.00 1.82
4270 4953 2.022195 GAGGCCGGGGAAGTAAAATTC 58.978 52.381 2.18 0.00 0.00 2.17
4271 4954 1.639108 AGGCCGGGGAAGTAAAATTCT 59.361 47.619 2.18 0.00 0.00 2.40
4272 4955 2.042569 AGGCCGGGGAAGTAAAATTCTT 59.957 45.455 2.18 0.00 0.00 2.52
4273 4956 2.426024 GGCCGGGGAAGTAAAATTCTTC 59.574 50.000 2.18 0.00 40.10 2.87
4757 5907 4.722700 GCTGGTCATGGCGTGGGT 62.723 66.667 6.90 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.145442 TCTGTTCTTAGATGAGATCAATGAGAT 57.855 33.333 0.00 0.00 40.48 2.75
55 56 8.530804 TCTGTTCTTAGATGAGATCAATGAGA 57.469 34.615 0.00 0.00 0.00 3.27
56 57 9.414295 GATCTGTTCTTAGATGAGATCAATGAG 57.586 37.037 18.50 0.00 39.17 2.90
57 58 8.921205 TGATCTGTTCTTAGATGAGATCAATGA 58.079 33.333 21.53 7.47 43.74 2.57
62 63 9.624697 GTACATGATCTGTTCTTAGATGAGATC 57.375 37.037 17.39 17.39 37.53 2.75
63 64 9.140874 TGTACATGATCTGTTCTTAGATGAGAT 57.859 33.333 0.00 3.92 37.53 2.75
64 65 8.525290 TGTACATGATCTGTTCTTAGATGAGA 57.475 34.615 0.00 0.00 37.53 3.27
65 66 9.247126 CTTGTACATGATCTGTTCTTAGATGAG 57.753 37.037 0.00 0.00 37.53 2.90
66 67 8.753133 ACTTGTACATGATCTGTTCTTAGATGA 58.247 33.333 15.13 0.00 37.53 2.92
67 68 8.939201 ACTTGTACATGATCTGTTCTTAGATG 57.061 34.615 15.13 0.00 37.53 2.90
68 69 8.976353 AGACTTGTACATGATCTGTTCTTAGAT 58.024 33.333 15.13 0.00 40.02 1.98
69 70 8.354711 AGACTTGTACATGATCTGTTCTTAGA 57.645 34.615 15.13 0.00 39.39 2.10
70 71 8.994429 AAGACTTGTACATGATCTGTTCTTAG 57.006 34.615 15.13 0.00 39.39 2.18
71 72 8.035394 GGAAGACTTGTACATGATCTGTTCTTA 58.965 37.037 15.13 0.00 39.39 2.10
72 73 6.876257 GGAAGACTTGTACATGATCTGTTCTT 59.124 38.462 15.13 11.45 39.39 2.52
73 74 6.402222 GGAAGACTTGTACATGATCTGTTCT 58.598 40.000 15.13 4.04 39.39 3.01
74 75 5.582665 GGGAAGACTTGTACATGATCTGTTC 59.417 44.000 15.13 7.29 39.39 3.18
75 76 5.491982 GGGAAGACTTGTACATGATCTGTT 58.508 41.667 15.13 0.00 39.39 3.16
76 77 4.080863 GGGGAAGACTTGTACATGATCTGT 60.081 45.833 15.13 0.00 42.13 3.41
77 78 4.080919 TGGGGAAGACTTGTACATGATCTG 60.081 45.833 15.13 0.00 0.00 2.90
78 79 4.104086 TGGGGAAGACTTGTACATGATCT 58.896 43.478 15.13 10.69 0.00 2.75
79 80 4.487714 TGGGGAAGACTTGTACATGATC 57.512 45.455 15.13 8.87 0.00 2.92
80 81 6.770286 ATATGGGGAAGACTTGTACATGAT 57.230 37.500 15.13 1.26 0.00 2.45
81 82 6.157820 TGAATATGGGGAAGACTTGTACATGA 59.842 38.462 15.13 0.00 0.00 3.07
82 83 6.356556 TGAATATGGGGAAGACTTGTACATG 58.643 40.000 7.18 7.18 0.00 3.21
83 84 6.575244 TGAATATGGGGAAGACTTGTACAT 57.425 37.500 0.00 0.00 0.00 2.29
84 85 6.575244 ATGAATATGGGGAAGACTTGTACA 57.425 37.500 0.00 0.00 0.00 2.90
85 86 9.877178 CTATATGAATATGGGGAAGACTTGTAC 57.123 37.037 0.00 0.00 0.00 2.90
86 87 9.046846 CCTATATGAATATGGGGAAGACTTGTA 57.953 37.037 5.08 0.00 37.64 2.41
87 88 7.922382 CCTATATGAATATGGGGAAGACTTGT 58.078 38.462 5.08 0.00 37.64 3.16
97 98 4.975147 TGTAGCCCCCTATATGAATATGGG 59.025 45.833 5.87 5.87 41.14 4.00
98 99 6.575244 TTGTAGCCCCCTATATGAATATGG 57.425 41.667 0.00 0.00 0.00 2.74
99 100 7.721399 GGATTTGTAGCCCCCTATATGAATATG 59.279 40.741 0.00 0.00 0.00 1.78
100 101 7.633391 AGGATTTGTAGCCCCCTATATGAATAT 59.367 37.037 0.00 0.00 0.00 1.28
101 102 6.971840 AGGATTTGTAGCCCCCTATATGAATA 59.028 38.462 0.00 0.00 0.00 1.75
102 103 5.797987 AGGATTTGTAGCCCCCTATATGAAT 59.202 40.000 0.00 0.00 0.00 2.57
103 104 5.170198 AGGATTTGTAGCCCCCTATATGAA 58.830 41.667 0.00 0.00 0.00 2.57
104 105 4.774779 AGGATTTGTAGCCCCCTATATGA 58.225 43.478 0.00 0.00 0.00 2.15
105 106 4.785376 AGAGGATTTGTAGCCCCCTATATG 59.215 45.833 0.00 0.00 0.00 1.78
106 107 5.043005 AGAGGATTTGTAGCCCCCTATAT 57.957 43.478 0.00 0.00 0.00 0.86
107 108 4.503685 AGAGGATTTGTAGCCCCCTATA 57.496 45.455 0.00 0.00 0.00 1.31
108 109 3.368921 AGAGGATTTGTAGCCCCCTAT 57.631 47.619 0.00 0.00 0.00 2.57
109 110 2.889522 AGAGGATTTGTAGCCCCCTA 57.110 50.000 0.00 0.00 0.00 3.53
110 111 1.847088 GAAGAGGATTTGTAGCCCCCT 59.153 52.381 0.00 0.00 0.00 4.79
111 112 1.564348 TGAAGAGGATTTGTAGCCCCC 59.436 52.381 0.00 0.00 0.00 5.40
114 115 3.935828 GTGACTGAAGAGGATTTGTAGCC 59.064 47.826 0.00 0.00 0.00 3.93
131 132 4.532126 TGATGGATAGAAGTTGTGGTGACT 59.468 41.667 0.00 0.00 0.00 3.41
144 145 8.937835 TGATTTAAAGGATGAGTGATGGATAGA 58.062 33.333 0.00 0.00 0.00 1.98
254 256 1.375523 CGCGCCCTCAAGTTAGGTT 60.376 57.895 0.00 0.00 34.56 3.50
256 258 2.100631 CACGCGCCCTCAAGTTAGG 61.101 63.158 5.73 0.00 36.30 2.69
258 260 2.740826 GCACGCGCCCTCAAGTTA 60.741 61.111 5.73 0.00 0.00 2.24
259 261 4.927782 TGCACGCGCCCTCAAGTT 62.928 61.111 5.73 0.00 37.32 2.66
261 263 4.170062 CATGCACGCGCCCTCAAG 62.170 66.667 5.73 0.00 37.32 3.02
305 308 0.743688 ACGGTGCACAAAATTGCTGA 59.256 45.000 20.43 0.00 43.41 4.26
352 363 3.017581 GGGTGGCTGGATCTGGGT 61.018 66.667 0.00 0.00 0.00 4.51
406 417 3.330853 CGACGGCTATGCGAAGGC 61.331 66.667 1.95 1.95 38.63 4.35
410 421 4.899687 GCGACGACGGCTATGCGA 62.900 66.667 9.67 0.00 40.15 5.10
478 489 7.888021 TGGCTAAAAATCTGAGGACTCATTTAA 59.112 33.333 2.00 0.00 39.13 1.52
479 490 7.336931 GTGGCTAAAAATCTGAGGACTCATTTA 59.663 37.037 2.00 4.50 39.13 1.40
505 516 2.222886 CGACAGTTCATCATTTGCCTCG 60.223 50.000 0.00 0.00 0.00 4.63
510 521 3.753272 ACCCTTCGACAGTTCATCATTTG 59.247 43.478 0.00 0.00 0.00 2.32
522 533 1.866015 ATCATCCTGACCCTTCGACA 58.134 50.000 0.00 0.00 0.00 4.35
534 545 7.125811 TCTGTTAAACTAGTGCCTTATCATCCT 59.874 37.037 0.00 0.00 0.00 3.24
536 547 7.042389 GCTCTGTTAAACTAGTGCCTTATCATC 60.042 40.741 0.00 0.00 0.00 2.92
557 1146 3.865164 TGACTTGCGTTGTATATGCTCTG 59.135 43.478 0.00 0.00 39.61 3.35
581 1170 1.933181 CGTCCGTATGAACACATGCAT 59.067 47.619 0.00 0.00 0.00 3.96
596 1185 1.154093 ACGCACATACACTCGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
613 1202 9.698309 AGTACAGATATAAATGCTCACATACAC 57.302 33.333 0.00 0.00 34.62 2.90
677 1266 1.675720 AACTTGGCTTTGCGCTTGGT 61.676 50.000 9.73 0.00 39.13 3.67
732 1327 3.687102 CACGTGGCCTGGTCGGTA 61.687 66.667 7.95 0.00 34.25 4.02
773 1368 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
774 1369 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
775 1370 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
776 1371 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
777 1372 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
778 1373 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
779 1374 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
780 1375 5.774690 AGATCTCTCTCTCTCTCTCTCTCTC 59.225 48.000 0.00 0.00 0.00 3.20
781 1376 5.539574 CAGATCTCTCTCTCTCTCTCTCTCT 59.460 48.000 0.00 0.00 0.00 3.10
782 1377 5.538053 TCAGATCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
783 1378 5.462240 TCAGATCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
784 1379 5.279406 CCTCAGATCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
817 1436 2.732619 GGGTTCCTCAGGGCTACCG 61.733 68.421 0.00 0.00 43.47 4.02
829 1448 3.254024 TTGCCTGCGAGAGGGTTCC 62.254 63.158 3.33 0.00 43.07 3.62
936 1555 4.588951 AGAAATGGTCTTGTTTTTCCCTCC 59.411 41.667 0.00 0.00 29.66 4.30
1049 1669 1.123077 CCATCGACATTCCAGGAGGA 58.877 55.000 0.00 0.00 43.93 3.71
1126 1749 4.182693 TGCAATCAAGCAAGAAAGGATG 57.817 40.909 0.00 0.00 42.46 3.51
1328 1951 7.981789 TCCTGCTGTATATACTGTTCAGAAAAG 59.018 37.037 19.68 0.00 0.00 2.27
1332 1955 6.039829 CAGTCCTGCTGTATATACTGTTCAGA 59.960 42.308 19.68 11.36 40.27 3.27
1333 1956 6.039829 TCAGTCCTGCTGTATATACTGTTCAG 59.960 42.308 17.87 16.18 45.23 3.02
1334 1957 5.891551 TCAGTCCTGCTGTATATACTGTTCA 59.108 40.000 17.87 9.61 45.23 3.18
1335 1958 6.039941 AGTCAGTCCTGCTGTATATACTGTTC 59.960 42.308 17.87 6.17 45.23 3.18
1337 1960 5.450453 AGTCAGTCCTGCTGTATATACTGT 58.550 41.667 17.87 0.00 45.23 3.55
1338 1961 6.398234 AAGTCAGTCCTGCTGTATATACTG 57.602 41.667 13.89 13.84 45.23 2.74
1339 1962 8.167392 AGATAAGTCAGTCCTGCTGTATATACT 58.833 37.037 13.89 0.00 45.23 2.12
1340 1963 8.343168 AGATAAGTCAGTCCTGCTGTATATAC 57.657 38.462 5.89 5.89 45.23 1.47
1406 2030 1.464997 GACGAAAAAGAAGCAGCGGAT 59.535 47.619 0.00 0.00 0.00 4.18
1408 2032 0.586319 TGACGAAAAAGAAGCAGCGG 59.414 50.000 0.00 0.00 0.00 5.52
1413 2039 2.731451 GGCCAAATGACGAAAAAGAAGC 59.269 45.455 0.00 0.00 0.00 3.86
1447 2073 8.862325 TTGAATTCAAGAGCTATTAACTGGAA 57.138 30.769 16.91 0.00 0.00 3.53
1460 2086 7.998212 GCGTGTAAAAATGTTTGAATTCAAGAG 59.002 33.333 19.64 3.53 37.15 2.85
1587 2220 3.490761 GCACACATGCCCAACCATATTAC 60.491 47.826 0.00 0.00 46.97 1.89
1644 2277 2.072298 GCTCACTGCTCCACAAGTAAG 58.928 52.381 0.00 0.00 38.95 2.34
1686 2323 7.094634 TGACTGCTAACATTCTTTCAAATCTCC 60.095 37.037 0.00 0.00 0.00 3.71
1694 2331 4.337763 CGCATGACTGCTAACATTCTTTC 58.662 43.478 0.00 0.00 46.65 2.62
1759 2396 3.982475 TGATCTTAATAGCCAGCACTCG 58.018 45.455 0.00 0.00 0.00 4.18
1813 2450 9.048446 CAATTCAAAGGTGAAATTTGAGTTCAT 57.952 29.630 0.00 0.00 46.66 2.57
1966 2623 7.235079 AGAATCAGGCTGATAACTAGCTAGTA 58.765 38.462 29.02 14.71 35.76 1.82
2005 2662 6.967897 ACCAAAAGGGGGTACGTATAAAATA 58.032 36.000 0.00 0.00 42.91 1.40
2180 2837 5.007385 ACCTTTGAGATATGTGTACCGAC 57.993 43.478 0.00 0.00 0.00 4.79
2387 3055 5.049405 GCAATGTTAATAATCCCTCTGTCCG 60.049 44.000 0.00 0.00 0.00 4.79
2392 3060 6.194235 TGGTTGCAATGTTAATAATCCCTCT 58.806 36.000 0.59 0.00 0.00 3.69
2486 3156 8.711457 AGTTAAATTGCAACAAAACTGATATGC 58.289 29.630 16.90 0.00 0.00 3.14
2504 3174 5.047092 CCAGCTCATTCCCAACAGTTAAATT 60.047 40.000 0.00 0.00 0.00 1.82
2872 3545 4.816385 TCGATCAGATTGTAAATGCCCTTC 59.184 41.667 0.00 0.00 0.00 3.46
2889 3562 8.449251 TCATGAATGAACCATTTTATCGATCA 57.551 30.769 0.00 0.00 33.90 2.92
2932 3605 8.893727 AGACAGTGGCTAATGAATAATTAACAC 58.106 33.333 3.97 0.00 38.13 3.32
2939 3612 7.112122 ACATTGAGACAGTGGCTAATGAATAA 58.888 34.615 23.69 5.15 31.79 1.40
3033 3707 1.255882 ATGCTTGTTTTCCGGCATCA 58.744 45.000 0.00 0.00 40.79 3.07
3054 3728 5.738619 TGGAACTAGCAGAATGTGAGTTA 57.261 39.130 0.00 0.00 41.21 2.24
3068 3742 3.594134 CTTGCCTCACTCTTGGAACTAG 58.406 50.000 0.00 0.00 0.00 2.57
3072 3746 0.250901 GCCTTGCCTCACTCTTGGAA 60.251 55.000 0.00 0.00 0.00 3.53
3117 3791 9.273016 TCCTAAGAAACAGAAAGATTGTGTTAG 57.727 33.333 6.11 1.30 45.12 2.34
3156 3830 1.980765 TGCAGAGAGGAGGAACATGTT 59.019 47.619 11.78 11.78 0.00 2.71
3173 3847 1.179152 CTCAACCATGCCAATCTGCA 58.821 50.000 0.00 0.00 46.94 4.41
3273 3947 0.666577 GTTGTCCGAGGGTCAAGACG 60.667 60.000 0.00 0.00 32.11 4.18
3308 3982 4.436584 CCAAATCTCGATGTCAACAAGCTC 60.437 45.833 0.00 0.00 0.00 4.09
3310 3984 3.436704 TCCAAATCTCGATGTCAACAAGC 59.563 43.478 0.00 0.00 0.00 4.01
3330 4006 3.559242 GCTAGATGACTGCAAGAATGTCC 59.441 47.826 0.00 0.00 37.43 4.02
3348 4026 7.117236 ACAATGCTCAATGTTCAAATTTGCTAG 59.883 33.333 13.54 4.15 0.00 3.42
3520 4200 6.541278 CCATAAGATCAGATCTGAGTTTTGCA 59.459 38.462 28.26 11.92 43.61 4.08
3566 4246 8.787852 GTCAAGAGTTGATAACAAAAGGATCTT 58.212 33.333 0.00 0.00 42.47 2.40
3616 4296 3.370103 GGTCGTCCTTGGAAACCATATCA 60.370 47.826 14.20 0.00 31.53 2.15
3619 4299 2.027561 CAGGTCGTCCTTGGAAACCATA 60.028 50.000 18.77 0.00 43.07 2.74
3625 4305 0.613260 CCATCAGGTCGTCCTTGGAA 59.387 55.000 12.55 0.00 41.78 3.53
3691 4371 1.209990 AGCAGCTCTGGATCTCCAAAG 59.790 52.381 0.00 0.00 46.97 2.77
3706 4386 4.819761 TGGATGTCGCCGAGCAGC 62.820 66.667 0.00 0.00 0.00 5.25
3812 4492 0.883814 GTGTGCTGCAGCTTCAGAGT 60.884 55.000 36.61 0.00 42.66 3.24
3814 4494 1.598962 GGTGTGCTGCAGCTTCAGA 60.599 57.895 36.61 16.02 41.99 3.27
3886 4566 2.163818 TTTGCCATCGTATCCGGATC 57.836 50.000 23.08 11.83 33.95 3.36
4008 4691 2.261215 GCCAAGGCTTGAGTTCAGG 58.739 57.895 28.18 10.85 38.26 3.86
4020 4703 1.604593 CCCAACCACAGAGCCAAGG 60.605 63.158 0.00 0.00 0.00 3.61
4021 4704 2.270986 GCCCAACCACAGAGCCAAG 61.271 63.158 0.00 0.00 0.00 3.61
4022 4705 2.203480 GCCCAACCACAGAGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
4023 4706 2.844195 ATGCCCAACCACAGAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
4024 4707 2.036256 ATGCCCAACCACAGAGCC 59.964 61.111 0.00 0.00 0.00 4.70
4025 4708 2.998279 GCATGCCCAACCACAGAGC 61.998 63.158 6.36 0.00 0.00 4.09
4026 4709 2.693762 CGCATGCCCAACCACAGAG 61.694 63.158 13.15 0.00 0.00 3.35
4027 4710 2.672651 CGCATGCCCAACCACAGA 60.673 61.111 13.15 0.00 0.00 3.41
4028 4711 3.751246 CCGCATGCCCAACCACAG 61.751 66.667 13.15 0.00 0.00 3.66
4029 4712 4.594854 ACCGCATGCCCAACCACA 62.595 61.111 13.15 0.00 0.00 4.17
4030 4713 3.302344 AACCGCATGCCCAACCAC 61.302 61.111 13.15 0.00 0.00 4.16
4031 4714 3.301554 CAACCGCATGCCCAACCA 61.302 61.111 13.15 0.00 0.00 3.67
4032 4715 3.302344 ACAACCGCATGCCCAACC 61.302 61.111 13.15 0.00 0.00 3.77
4033 4716 2.049248 CACAACCGCATGCCCAAC 60.049 61.111 13.15 0.00 0.00 3.77
4034 4717 3.988525 GCACAACCGCATGCCCAA 61.989 61.111 13.15 0.00 35.73 4.12
4036 4719 4.424566 CTGCACAACCGCATGCCC 62.425 66.667 13.15 0.00 42.06 5.36
4039 4722 1.585267 TTAGGCTGCACAACCGCATG 61.585 55.000 0.50 0.00 42.06 4.06
4040 4723 1.303236 TTAGGCTGCACAACCGCAT 60.303 52.632 0.50 0.00 42.06 4.73
4041 4724 2.112087 TTAGGCTGCACAACCGCA 59.888 55.556 0.50 0.00 40.32 5.69
4042 4725 2.561373 GTTAGGCTGCACAACCGC 59.439 61.111 0.50 0.00 0.00 5.68
4043 4726 1.666553 TCGTTAGGCTGCACAACCG 60.667 57.895 0.50 0.00 0.00 4.44
4044 4727 1.574702 GGTCGTTAGGCTGCACAACC 61.575 60.000 0.50 0.00 0.00 3.77
4045 4728 1.574702 GGGTCGTTAGGCTGCACAAC 61.575 60.000 0.50 3.77 0.00 3.32
4046 4729 1.302192 GGGTCGTTAGGCTGCACAA 60.302 57.895 0.50 0.00 0.00 3.33
4047 4730 2.345991 GGGTCGTTAGGCTGCACA 59.654 61.111 0.50 0.00 0.00 4.57
4048 4731 2.813908 CGGGTCGTTAGGCTGCAC 60.814 66.667 0.50 0.00 0.00 4.57
4049 4732 2.992689 TCGGGTCGTTAGGCTGCA 60.993 61.111 0.50 0.00 0.00 4.41
4050 4733 2.202756 CTCGGGTCGTTAGGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
4051 4734 0.458025 GAACTCGGGTCGTTAGGCTG 60.458 60.000 0.00 0.00 0.00 4.85
4052 4735 0.896940 TGAACTCGGGTCGTTAGGCT 60.897 55.000 0.00 0.00 0.00 4.58
4053 4736 0.037975 TTGAACTCGGGTCGTTAGGC 60.038 55.000 0.00 0.00 0.00 3.93
4054 4737 2.667473 ATTGAACTCGGGTCGTTAGG 57.333 50.000 0.00 0.00 0.00 2.69
4055 4738 2.928116 GGAATTGAACTCGGGTCGTTAG 59.072 50.000 0.00 0.00 0.00 2.34
4056 4739 2.564062 AGGAATTGAACTCGGGTCGTTA 59.436 45.455 0.00 0.00 0.00 3.18
4057 4740 1.346722 AGGAATTGAACTCGGGTCGTT 59.653 47.619 0.00 0.00 0.00 3.85
4058 4741 0.974383 AGGAATTGAACTCGGGTCGT 59.026 50.000 0.00 0.00 0.00 4.34
4059 4742 2.426024 TCTAGGAATTGAACTCGGGTCG 59.574 50.000 0.00 0.00 0.00 4.79
4060 4743 4.467198 TTCTAGGAATTGAACTCGGGTC 57.533 45.455 0.00 0.00 0.00 4.46
4061 4744 5.045869 TCAATTCTAGGAATTGAACTCGGGT 60.046 40.000 24.34 0.00 41.92 5.28
4062 4745 5.294552 GTCAATTCTAGGAATTGAACTCGGG 59.705 44.000 26.66 6.75 45.06 5.14
4063 4746 5.874810 TGTCAATTCTAGGAATTGAACTCGG 59.125 40.000 26.66 7.30 45.06 4.63
4064 4747 6.036517 CCTGTCAATTCTAGGAATTGAACTCG 59.963 42.308 26.66 17.94 45.06 4.18
4065 4748 6.881602 ACCTGTCAATTCTAGGAATTGAACTC 59.118 38.462 26.66 18.75 45.06 3.01
4066 4749 6.656693 CACCTGTCAATTCTAGGAATTGAACT 59.343 38.462 26.66 13.22 45.06 3.01
4067 4750 6.655003 TCACCTGTCAATTCTAGGAATTGAAC 59.345 38.462 26.66 21.66 45.06 3.18
4068 4751 6.778821 TCACCTGTCAATTCTAGGAATTGAA 58.221 36.000 26.66 18.77 45.06 2.69
4069 4752 6.373005 TCACCTGTCAATTCTAGGAATTGA 57.627 37.500 23.36 23.36 42.44 2.57
4070 4753 6.600822 ACATCACCTGTCAATTCTAGGAATTG 59.399 38.462 20.45 20.45 38.60 2.32
4071 4754 6.725364 ACATCACCTGTCAATTCTAGGAATT 58.275 36.000 6.24 0.31 35.55 2.17
4072 4755 6.319048 ACATCACCTGTCAATTCTAGGAAT 57.681 37.500 6.24 0.00 35.55 3.01
4073 4756 5.762179 ACATCACCTGTCAATTCTAGGAA 57.238 39.130 6.24 0.00 35.55 3.36
4074 4757 5.719563 TGTACATCACCTGTCAATTCTAGGA 59.280 40.000 0.00 0.00 39.39 2.94
4075 4758 5.977635 TGTACATCACCTGTCAATTCTAGG 58.022 41.667 0.00 0.00 39.39 3.02
4076 4759 6.481313 CCATGTACATCACCTGTCAATTCTAG 59.519 42.308 5.07 0.00 39.39 2.43
4077 4760 6.348498 CCATGTACATCACCTGTCAATTCTA 58.652 40.000 5.07 0.00 39.39 2.10
4078 4761 5.188434 CCATGTACATCACCTGTCAATTCT 58.812 41.667 5.07 0.00 39.39 2.40
4079 4762 4.336433 CCCATGTACATCACCTGTCAATTC 59.664 45.833 5.07 0.00 39.39 2.17
4080 4763 4.263905 ACCCATGTACATCACCTGTCAATT 60.264 41.667 5.07 0.00 39.39 2.32
4081 4764 3.266772 ACCCATGTACATCACCTGTCAAT 59.733 43.478 5.07 0.00 39.39 2.57
4082 4765 2.642311 ACCCATGTACATCACCTGTCAA 59.358 45.455 5.07 0.00 39.39 3.18
4083 4766 2.265367 ACCCATGTACATCACCTGTCA 58.735 47.619 5.07 0.00 39.39 3.58
4084 4767 3.350219 AACCCATGTACATCACCTGTC 57.650 47.619 5.07 0.00 39.39 3.51
4085 4768 3.806949 AAACCCATGTACATCACCTGT 57.193 42.857 5.07 0.00 42.13 4.00
4086 4769 3.443681 GGAAAACCCATGTACATCACCTG 59.556 47.826 5.07 0.00 34.14 4.00
4087 4770 3.563479 GGGAAAACCCATGTACATCACCT 60.563 47.826 5.07 0.00 36.34 4.00
4088 4771 2.758423 GGGAAAACCCATGTACATCACC 59.242 50.000 5.07 2.26 36.34 4.02
4101 4784 6.156083 TGATCTTCAATAAATGGGGGAAAACC 59.844 38.462 0.00 0.00 39.11 3.27
4102 4785 7.181569 TGATCTTCAATAAATGGGGGAAAAC 57.818 36.000 0.00 0.00 0.00 2.43
4103 4786 7.457535 ACTTGATCTTCAATAAATGGGGGAAAA 59.542 33.333 0.00 0.00 35.59 2.29
4104 4787 6.959366 ACTTGATCTTCAATAAATGGGGGAAA 59.041 34.615 0.00 0.00 35.59 3.13
4105 4788 6.502138 ACTTGATCTTCAATAAATGGGGGAA 58.498 36.000 0.00 0.00 35.59 3.97
4106 4789 6.091076 ACTTGATCTTCAATAAATGGGGGA 57.909 37.500 0.00 0.00 35.59 4.81
4107 4790 6.796785 AACTTGATCTTCAATAAATGGGGG 57.203 37.500 0.00 0.00 35.59 5.40
4108 4791 7.043565 CCAAACTTGATCTTCAATAAATGGGG 58.956 38.462 0.00 0.00 35.59 4.96
4109 4792 7.546667 CACCAAACTTGATCTTCAATAAATGGG 59.453 37.037 0.00 0.00 35.59 4.00
4110 4793 8.090214 ACACCAAACTTGATCTTCAATAAATGG 58.910 33.333 0.00 0.00 35.59 3.16
4111 4794 8.918658 CACACCAAACTTGATCTTCAATAAATG 58.081 33.333 0.00 0.00 35.59 2.32
4112 4795 8.641541 ACACACCAAACTTGATCTTCAATAAAT 58.358 29.630 0.00 0.00 35.59 1.40
4113 4796 7.920151 CACACACCAAACTTGATCTTCAATAAA 59.080 33.333 0.00 0.00 35.59 1.40
4114 4797 7.424803 CACACACCAAACTTGATCTTCAATAA 58.575 34.615 0.00 0.00 35.59 1.40
4115 4798 6.016360 CCACACACCAAACTTGATCTTCAATA 60.016 38.462 0.00 0.00 35.59 1.90
4116 4799 5.221303 CCACACACCAAACTTGATCTTCAAT 60.221 40.000 0.00 0.00 35.59 2.57
4117 4800 4.097741 CCACACACCAAACTTGATCTTCAA 59.902 41.667 0.00 0.00 34.79 2.69
4118 4801 3.631686 CCACACACCAAACTTGATCTTCA 59.368 43.478 0.00 0.00 0.00 3.02
4119 4802 3.632145 ACCACACACCAAACTTGATCTTC 59.368 43.478 0.00 0.00 0.00 2.87
4120 4803 3.381272 CACCACACACCAAACTTGATCTT 59.619 43.478 0.00 0.00 0.00 2.40
4121 4804 2.951642 CACCACACACCAAACTTGATCT 59.048 45.455 0.00 0.00 0.00 2.75
4122 4805 2.034558 CCACCACACACCAAACTTGATC 59.965 50.000 0.00 0.00 0.00 2.92
4123 4806 2.031120 CCACCACACACCAAACTTGAT 58.969 47.619 0.00 0.00 0.00 2.57
4124 4807 1.004862 TCCACCACACACCAAACTTGA 59.995 47.619 0.00 0.00 0.00 3.02
4125 4808 1.468985 TCCACCACACACCAAACTTG 58.531 50.000 0.00 0.00 0.00 3.16
4126 4809 2.223803 TTCCACCACACACCAAACTT 57.776 45.000 0.00 0.00 0.00 2.66
4127 4810 2.306847 GATTCCACCACACACCAAACT 58.693 47.619 0.00 0.00 0.00 2.66
4128 4811 2.028130 TGATTCCACCACACACCAAAC 58.972 47.619 0.00 0.00 0.00 2.93
4129 4812 2.028130 GTGATTCCACCACACACCAAA 58.972 47.619 0.00 0.00 37.33 3.28
4130 4813 1.214175 AGTGATTCCACCACACACCAA 59.786 47.619 0.00 0.00 44.22 3.67
4131 4814 0.843309 AGTGATTCCACCACACACCA 59.157 50.000 0.00 0.00 44.22 4.17
4132 4815 1.202758 TGAGTGATTCCACCACACACC 60.203 52.381 0.00 0.00 44.22 4.16
4133 4816 2.254546 TGAGTGATTCCACCACACAC 57.745 50.000 0.00 0.00 44.22 3.82
4134 4817 2.371510 TGATGAGTGATTCCACCACACA 59.628 45.455 0.00 0.00 44.22 3.72
4135 4818 3.057969 TGATGAGTGATTCCACCACAC 57.942 47.619 0.00 0.00 44.22 3.82
4136 4819 3.786368 TTGATGAGTGATTCCACCACA 57.214 42.857 0.00 0.00 44.22 4.17
4137 4820 5.452078 TTTTTGATGAGTGATTCCACCAC 57.548 39.130 0.00 0.00 44.22 4.16
4180 4863 8.655935 AGATAAACATGGTCCTCAGAATTTTT 57.344 30.769 0.00 0.00 0.00 1.94
4181 4864 8.526147 CAAGATAAACATGGTCCTCAGAATTTT 58.474 33.333 0.00 0.00 0.00 1.82
4182 4865 7.123247 CCAAGATAAACATGGTCCTCAGAATTT 59.877 37.037 0.00 0.00 33.27 1.82
4183 4866 6.604795 CCAAGATAAACATGGTCCTCAGAATT 59.395 38.462 0.00 0.00 33.27 2.17
4184 4867 6.125029 CCAAGATAAACATGGTCCTCAGAAT 58.875 40.000 0.00 0.00 33.27 2.40
4185 4868 5.014123 ACCAAGATAAACATGGTCCTCAGAA 59.986 40.000 0.00 0.00 45.86 3.02
4186 4869 4.536090 ACCAAGATAAACATGGTCCTCAGA 59.464 41.667 0.00 0.00 45.86 3.27
4187 4870 4.848357 ACCAAGATAAACATGGTCCTCAG 58.152 43.478 0.00 0.00 45.86 3.35
4188 4871 4.927267 ACCAAGATAAACATGGTCCTCA 57.073 40.909 0.00 0.00 45.86 3.86
4189 4872 5.990668 AGTACCAAGATAAACATGGTCCTC 58.009 41.667 0.00 0.00 45.86 3.71
4190 4873 5.487488 TGAGTACCAAGATAAACATGGTCCT 59.513 40.000 0.00 0.00 45.86 3.85
4191 4874 5.741011 TGAGTACCAAGATAAACATGGTCC 58.259 41.667 0.00 0.00 45.86 4.46
4192 4875 8.204836 AGTATGAGTACCAAGATAAACATGGTC 58.795 37.037 0.00 0.00 45.86 4.02
4202 4885 7.926555 CGACCATTTTAGTATGAGTACCAAGAT 59.073 37.037 0.00 0.00 0.00 2.40
4203 4886 7.093640 ACGACCATTTTAGTATGAGTACCAAGA 60.094 37.037 0.00 0.00 0.00 3.02
4204 4887 7.039882 ACGACCATTTTAGTATGAGTACCAAG 58.960 38.462 0.00 0.00 0.00 3.61
4205 4888 6.938507 ACGACCATTTTAGTATGAGTACCAA 58.061 36.000 0.00 0.00 0.00 3.67
4206 4889 6.534475 ACGACCATTTTAGTATGAGTACCA 57.466 37.500 0.00 0.00 0.00 3.25
4207 4890 7.115947 GCATACGACCATTTTAGTATGAGTACC 59.884 40.741 15.84 0.00 45.38 3.34
4208 4891 7.650504 TGCATACGACCATTTTAGTATGAGTAC 59.349 37.037 15.84 0.00 45.38 2.73
4209 4892 7.718525 TGCATACGACCATTTTAGTATGAGTA 58.281 34.615 15.84 2.09 45.38 2.59
4210 4893 6.578944 TGCATACGACCATTTTAGTATGAGT 58.421 36.000 15.84 0.00 45.38 3.41
4211 4894 7.148573 GGATGCATACGACCATTTTAGTATGAG 60.149 40.741 15.84 0.00 45.38 2.90
4212 4895 6.649141 GGATGCATACGACCATTTTAGTATGA 59.351 38.462 15.84 4.60 45.38 2.15
4213 4896 6.128282 GGGATGCATACGACCATTTTAGTATG 60.128 42.308 1.96 9.35 45.34 2.39
4214 4897 5.938125 GGGATGCATACGACCATTTTAGTAT 59.062 40.000 1.96 0.00 0.00 2.12
4215 4898 5.071250 AGGGATGCATACGACCATTTTAGTA 59.929 40.000 1.96 0.00 0.00 1.82
4216 4899 4.134563 GGGATGCATACGACCATTTTAGT 58.865 43.478 1.96 0.00 0.00 2.24
4217 4900 4.389374 AGGGATGCATACGACCATTTTAG 58.611 43.478 1.96 0.00 0.00 1.85
4218 4901 4.431416 AGGGATGCATACGACCATTTTA 57.569 40.909 1.96 0.00 0.00 1.52
4219 4902 3.297134 AGGGATGCATACGACCATTTT 57.703 42.857 1.96 0.00 0.00 1.82
4220 4903 3.391296 ACTAGGGATGCATACGACCATTT 59.609 43.478 1.96 0.00 0.00 2.32
4221 4904 2.972713 ACTAGGGATGCATACGACCATT 59.027 45.455 1.96 0.00 0.00 3.16
4222 4905 2.609747 ACTAGGGATGCATACGACCAT 58.390 47.619 1.96 0.00 0.00 3.55
4223 4906 2.082140 ACTAGGGATGCATACGACCA 57.918 50.000 1.96 0.00 0.00 4.02
4224 4907 2.548067 CCAACTAGGGATGCATACGACC 60.548 54.545 1.96 1.98 0.00 4.79
4225 4908 2.102588 ACCAACTAGGGATGCATACGAC 59.897 50.000 1.96 0.00 43.89 4.34
4226 4909 2.102420 CACCAACTAGGGATGCATACGA 59.898 50.000 1.96 0.00 43.89 3.43
4227 4910 2.483876 CACCAACTAGGGATGCATACG 58.516 52.381 1.96 0.00 43.89 3.06
4228 4911 2.222027 GCACCAACTAGGGATGCATAC 58.778 52.381 0.00 0.00 43.89 2.39
4229 4912 1.843206 TGCACCAACTAGGGATGCATA 59.157 47.619 0.00 0.00 41.18 3.14
4230 4913 0.625316 TGCACCAACTAGGGATGCAT 59.375 50.000 0.00 0.00 41.18 3.96
4231 4914 0.035152 CTGCACCAACTAGGGATGCA 60.035 55.000 5.68 5.68 43.70 3.96
4232 4915 0.253044 TCTGCACCAACTAGGGATGC 59.747 55.000 0.00 0.00 43.89 3.91
4233 4916 1.134280 CCTCTGCACCAACTAGGGATG 60.134 57.143 0.00 0.00 43.89 3.51
4234 4917 1.207791 CCTCTGCACCAACTAGGGAT 58.792 55.000 0.00 0.00 43.89 3.85
4235 4918 1.553690 GCCTCTGCACCAACTAGGGA 61.554 60.000 0.00 0.00 43.89 4.20
4236 4919 1.078143 GCCTCTGCACCAACTAGGG 60.078 63.158 0.00 0.00 43.89 3.53
4237 4920 1.078143 GGCCTCTGCACCAACTAGG 60.078 63.158 0.00 0.00 45.67 3.02
4238 4921 1.448540 CGGCCTCTGCACCAACTAG 60.449 63.158 0.00 0.00 40.13 2.57
4239 4922 2.662596 CGGCCTCTGCACCAACTA 59.337 61.111 0.00 0.00 40.13 2.24
4240 4923 4.335647 CCGGCCTCTGCACCAACT 62.336 66.667 0.00 0.00 40.13 3.16
4245 4928 4.785453 CTTCCCCGGCCTCTGCAC 62.785 72.222 0.00 0.00 40.13 4.57
4246 4929 3.916438 TACTTCCCCGGCCTCTGCA 62.916 63.158 0.00 0.00 40.13 4.41
4247 4930 2.193087 TTTACTTCCCCGGCCTCTGC 62.193 60.000 0.00 0.00 0.00 4.26
4248 4931 0.326927 TTTTACTTCCCCGGCCTCTG 59.673 55.000 0.00 0.00 0.00 3.35
4249 4932 1.296002 ATTTTACTTCCCCGGCCTCT 58.704 50.000 0.00 0.00 0.00 3.69
4250 4933 2.022195 GAATTTTACTTCCCCGGCCTC 58.978 52.381 0.00 0.00 0.00 4.70
4251 4934 1.639108 AGAATTTTACTTCCCCGGCCT 59.361 47.619 0.00 0.00 0.00 5.19
4252 4935 2.139323 AGAATTTTACTTCCCCGGCC 57.861 50.000 0.00 0.00 0.00 6.13
4253 4936 3.777465 GAAGAATTTTACTTCCCCGGC 57.223 47.619 0.00 0.00 38.12 6.13
4277 4960 9.973450 GCTCTTCTCTCCTTTAAAAATCTTTTT 57.027 29.630 5.98 5.98 42.51 1.94
4278 4961 8.580720 GGCTCTTCTCTCCTTTAAAAATCTTTT 58.419 33.333 0.00 0.00 0.00 2.27
4279 4962 7.177568 GGGCTCTTCTCTCCTTTAAAAATCTTT 59.822 37.037 0.00 0.00 0.00 2.52
4280 4963 6.661377 GGGCTCTTCTCTCCTTTAAAAATCTT 59.339 38.462 0.00 0.00 0.00 2.40
4281 4964 6.184068 GGGCTCTTCTCTCCTTTAAAAATCT 58.816 40.000 0.00 0.00 0.00 2.40
4282 4965 5.358442 GGGGCTCTTCTCTCCTTTAAAAATC 59.642 44.000 0.00 0.00 0.00 2.17
4283 4966 5.265191 GGGGCTCTTCTCTCCTTTAAAAAT 58.735 41.667 0.00 0.00 0.00 1.82
4284 4967 4.663334 GGGGCTCTTCTCTCCTTTAAAAA 58.337 43.478 0.00 0.00 0.00 1.94
4285 4968 3.307480 CGGGGCTCTTCTCTCCTTTAAAA 60.307 47.826 0.00 0.00 0.00 1.52
4286 4969 2.236395 CGGGGCTCTTCTCTCCTTTAAA 59.764 50.000 0.00 0.00 0.00 1.52
4287 4970 1.831736 CGGGGCTCTTCTCTCCTTTAA 59.168 52.381 0.00 0.00 0.00 1.52
4288 4971 1.273098 ACGGGGCTCTTCTCTCCTTTA 60.273 52.381 0.00 0.00 0.00 1.85
4289 4972 0.545548 ACGGGGCTCTTCTCTCCTTT 60.546 55.000 0.00 0.00 0.00 3.11
4290 4973 1.079438 ACGGGGCTCTTCTCTCCTT 59.921 57.895 0.00 0.00 0.00 3.36
4291 4974 1.684049 CACGGGGCTCTTCTCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
4292 4975 1.950973 GACACGGGGCTCTTCTCTCC 61.951 65.000 0.00 0.00 0.00 3.71
4293 4976 1.513622 GACACGGGGCTCTTCTCTC 59.486 63.158 0.00 0.00 0.00 3.20
4294 4977 2.344203 CGACACGGGGCTCTTCTCT 61.344 63.158 0.00 0.00 0.00 3.10
4295 4978 2.182030 CGACACGGGGCTCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
4296 4979 4.070552 GCGACACGGGGCTCTTCT 62.071 66.667 0.00 0.00 0.00 2.85
4753 5903 3.161450 GAGCCCGATGCCTACCCA 61.161 66.667 0.00 0.00 42.71 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.