Multiple sequence alignment - TraesCS6D01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G151600 chr6D 100.000 3334 0 0 1 3334 124896409 124899742 0.000000e+00 6157
1 TraesCS6D01G151600 chr6D 91.864 885 61 7 1 882 68049379 68050255 0.000000e+00 1225
2 TraesCS6D01G151600 chr6D 90.492 894 71 7 1 885 110723584 110722696 0.000000e+00 1168
3 TraesCS6D01G151600 chr6D 96.667 180 6 0 3155 3334 124904378 124904557 1.940000e-77 300
4 TraesCS6D01G151600 chr6D 86.755 151 14 2 2364 2510 143002548 143002696 2.660000e-36 163
5 TraesCS6D01G151600 chr6B 96.387 1467 46 3 904 2363 222587505 222588971 0.000000e+00 2409
6 TraesCS6D01G151600 chr6B 92.640 394 24 4 2722 3114 222590050 222590439 2.250000e-156 562
7 TraesCS6D01G151600 chr6B 81.944 216 7 9 2510 2716 222588963 222589155 1.600000e-33 154
8 TraesCS6D01G151600 chr6A 96.251 1467 47 4 905 2363 156208858 156207392 0.000000e+00 2398
9 TraesCS6D01G151600 chr6A 94.796 442 22 1 2714 3155 156207041 156206601 0.000000e+00 688
10 TraesCS6D01G151600 chr6A 89.450 218 10 7 2510 2716 156207400 156207185 2.550000e-66 263
11 TraesCS6D01G151600 chr6A 87.755 147 12 2 2364 2506 188240467 188240611 2.060000e-37 167
12 TraesCS6D01G151600 chr7D 91.391 906 65 10 1 900 88343674 88344572 0.000000e+00 1229
13 TraesCS6D01G151600 chr7D 94.382 178 10 0 3155 3332 55368716 55368893 1.180000e-69 274
14 TraesCS6D01G151600 chr7D 93.296 179 12 0 3154 3332 22032335 22032513 7.090000e-67 265
15 TraesCS6D01G151600 chr7D 92.697 178 13 0 3155 3332 22037184 22037361 1.190000e-64 257
16 TraesCS6D01G151600 chrUn 91.648 886 60 10 1 881 111930275 111931151 0.000000e+00 1214
17 TraesCS6D01G151600 chr1D 91.535 886 64 8 1 883 340541122 340541999 0.000000e+00 1210
18 TraesCS6D01G151600 chr1D 93.820 178 11 0 3155 3332 452675660 452675837 5.480000e-68 268
19 TraesCS6D01G151600 chr1D 93.258 178 12 0 3155 3332 452680484 452680661 2.550000e-66 263
20 TraesCS6D01G151600 chr2D 91.196 886 65 9 1 883 355407763 355406888 0.000000e+00 1192
21 TraesCS6D01G151600 chr2D 89.302 888 79 11 1 880 80431207 80432086 0.000000e+00 1099
22 TraesCS6D01G151600 chr2D 93.333 180 12 0 3155 3334 475461489 475461310 1.970000e-67 267
23 TraesCS6D01G151600 chr2D 93.333 180 12 0 3155 3334 475466292 475466113 1.970000e-67 267
24 TraesCS6D01G151600 chr2D 92.896 183 12 1 3152 3334 639878636 639878455 7.090000e-67 265
25 TraesCS6D01G151600 chr2A 89.651 889 78 10 1 883 122130753 122129873 0.000000e+00 1120
26 TraesCS6D01G151600 chr5A 89.671 881 78 6 1 880 550145005 550144137 0.000000e+00 1110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G151600 chr6D 124896409 124899742 3333 False 6157.000000 6157 100.000000 1 3334 1 chr6D.!!$F2 3333
1 TraesCS6D01G151600 chr6D 68049379 68050255 876 False 1225.000000 1225 91.864000 1 882 1 chr6D.!!$F1 881
2 TraesCS6D01G151600 chr6D 110722696 110723584 888 True 1168.000000 1168 90.492000 1 885 1 chr6D.!!$R1 884
3 TraesCS6D01G151600 chr6B 222587505 222590439 2934 False 1041.666667 2409 90.323667 904 3114 3 chr6B.!!$F1 2210
4 TraesCS6D01G151600 chr6A 156206601 156208858 2257 True 1116.333333 2398 93.499000 905 3155 3 chr6A.!!$R1 2250
5 TraesCS6D01G151600 chr7D 88343674 88344572 898 False 1229.000000 1229 91.391000 1 900 1 chr7D.!!$F4 899
6 TraesCS6D01G151600 chrUn 111930275 111931151 876 False 1214.000000 1214 91.648000 1 881 1 chrUn.!!$F1 880
7 TraesCS6D01G151600 chr1D 340541122 340541999 877 False 1210.000000 1210 91.535000 1 883 1 chr1D.!!$F1 882
8 TraesCS6D01G151600 chr2D 355406888 355407763 875 True 1192.000000 1192 91.196000 1 883 1 chr2D.!!$R1 882
9 TraesCS6D01G151600 chr2D 80431207 80432086 879 False 1099.000000 1099 89.302000 1 880 1 chr2D.!!$F1 879
10 TraesCS6D01G151600 chr2A 122129873 122130753 880 True 1120.000000 1120 89.651000 1 883 1 chr2A.!!$R1 882
11 TraesCS6D01G151600 chr5A 550144137 550145005 868 True 1110.000000 1110 89.671000 1 880 1 chr5A.!!$R1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 702 0.037326 CCGCCAACTGCTTCTCTGTA 60.037 55.0 0.0 0.0 38.05 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 2437 0.02811 GCATCGTCTCAAAATCGGGC 59.972 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.971505 AAGAGGGATCGGCGCATTCA 61.972 55.000 10.83 0.00 0.00 2.57
300 301 0.528684 GGACGAATCGGAGAGCAAGG 60.529 60.000 7.80 0.00 43.63 3.61
354 355 1.328374 GTACCGGCGCGTCAAATTAAT 59.672 47.619 12.89 0.00 0.00 1.40
366 373 5.605327 CGTCAAATTAATTATACCGCTCGG 58.395 41.667 6.79 6.79 42.03 4.63
499 511 2.124445 TCTTCTCGCCGGATCCGA 60.124 61.111 35.42 14.93 42.83 4.55
678 702 0.037326 CCGCCAACTGCTTCTCTGTA 60.037 55.000 0.00 0.00 38.05 2.74
758 786 4.770874 GCCGCGCCCCTCACTTTA 62.771 66.667 0.00 0.00 0.00 1.85
759 787 2.046700 CCGCGCCCCTCACTTTAA 60.047 61.111 0.00 0.00 0.00 1.52
768 796 5.336134 GCGCCCCTCACTTTAAAATTTTCTA 60.336 40.000 6.72 0.00 0.00 2.10
777 805 2.203470 AAAATTTTCTACGGGCCGGA 57.797 45.000 31.78 23.16 0.00 5.14
778 806 2.203470 AAATTTTCTACGGGCCGGAA 57.797 45.000 31.78 21.44 0.00 4.30
781 809 0.108207 TTTTCTACGGGCCGGAACAA 59.892 50.000 31.78 14.73 0.00 2.83
782 810 0.108207 TTTCTACGGGCCGGAACAAA 59.892 50.000 31.78 19.95 0.00 2.83
885 916 3.194062 GTGCCAGAGTTGCTCTAAGATC 58.806 50.000 0.00 0.00 38.99 2.75
886 917 2.169352 TGCCAGAGTTGCTCTAAGATCC 59.831 50.000 0.00 0.00 38.99 3.36
887 918 2.169352 GCCAGAGTTGCTCTAAGATCCA 59.831 50.000 0.00 0.00 38.99 3.41
888 919 3.369892 GCCAGAGTTGCTCTAAGATCCAA 60.370 47.826 0.00 0.00 38.99 3.53
889 920 4.836825 CCAGAGTTGCTCTAAGATCCAAA 58.163 43.478 0.00 0.00 38.99 3.28
890 921 5.435291 CCAGAGTTGCTCTAAGATCCAAAT 58.565 41.667 0.00 0.00 38.99 2.32
891 922 6.586344 CCAGAGTTGCTCTAAGATCCAAATA 58.414 40.000 0.00 0.00 38.99 1.40
892 923 7.222872 CCAGAGTTGCTCTAAGATCCAAATAT 58.777 38.462 0.00 0.00 38.99 1.28
893 924 7.387397 CCAGAGTTGCTCTAAGATCCAAATATC 59.613 40.741 0.00 0.00 38.99 1.63
894 925 7.387397 CAGAGTTGCTCTAAGATCCAAATATCC 59.613 40.741 0.00 0.00 38.99 2.59
895 926 7.071698 AGAGTTGCTCTAAGATCCAAATATCCA 59.928 37.037 0.00 0.00 39.28 3.41
896 927 7.577303 AGTTGCTCTAAGATCCAAATATCCAA 58.423 34.615 0.00 0.00 0.00 3.53
897 928 8.223330 AGTTGCTCTAAGATCCAAATATCCAAT 58.777 33.333 0.00 0.00 0.00 3.16
898 929 8.510505 GTTGCTCTAAGATCCAAATATCCAATC 58.489 37.037 0.00 0.00 0.00 2.67
899 930 7.170965 TGCTCTAAGATCCAAATATCCAATCC 58.829 38.462 0.00 0.00 0.00 3.01
900 931 7.017950 TGCTCTAAGATCCAAATATCCAATCCT 59.982 37.037 0.00 0.00 0.00 3.24
901 932 7.552330 GCTCTAAGATCCAAATATCCAATCCTC 59.448 40.741 0.00 0.00 0.00 3.71
902 933 7.922382 TCTAAGATCCAAATATCCAATCCTCC 58.078 38.462 0.00 0.00 0.00 4.30
928 959 1.782028 GAACACAGCAACACGACCCC 61.782 60.000 0.00 0.00 0.00 4.95
956 994 3.637273 GCAGACCGTCCACCCCTT 61.637 66.667 0.00 0.00 0.00 3.95
993 1032 2.658422 GCCGAACCCTACAACCGA 59.342 61.111 0.00 0.00 0.00 4.69
1320 1363 1.339929 ACGACATATGGCACGCAGATA 59.660 47.619 9.77 0.00 0.00 1.98
1519 1562 1.238439 CGTGCAATTCAACACTCCCT 58.762 50.000 0.00 0.00 34.58 4.20
1601 1644 2.442236 ACCCCATATGGTGCTCAAAG 57.558 50.000 20.46 2.37 37.20 2.77
1641 1684 1.001068 CATGCACAAATGAGGCCACAA 59.999 47.619 7.05 0.00 0.00 3.33
1644 1687 1.202510 GCACAAATGAGGCCACAACAA 60.203 47.619 7.05 0.00 0.00 2.83
2017 2060 1.899142 GGGGAAATTGCAGCCAACTTA 59.101 47.619 0.00 0.00 32.95 2.24
2169 2212 2.322161 CTTGCAAAGCACAGGAAATCG 58.678 47.619 0.00 0.00 38.71 3.34
2342 2388 9.197694 AGCGTGAATTGTATTTGAGATAGATAC 57.802 33.333 0.00 0.00 0.00 2.24
2371 2417 9.726438 ATACCATTATAGGTAAATGAGAACTGC 57.274 33.333 0.00 0.00 46.54 4.40
2372 2418 7.806180 ACCATTATAGGTAAATGAGAACTGCT 58.194 34.615 0.00 0.00 40.98 4.24
2373 2419 8.934697 ACCATTATAGGTAAATGAGAACTGCTA 58.065 33.333 0.00 0.00 40.98 3.49
2374 2420 9.950496 CCATTATAGGTAAATGAGAACTGCTAT 57.050 33.333 0.00 0.00 36.61 2.97
2378 2424 5.844004 AGGTAAATGAGAACTGCTATACGG 58.156 41.667 0.00 0.00 0.00 4.02
2379 2425 5.597182 AGGTAAATGAGAACTGCTATACGGA 59.403 40.000 0.00 0.00 0.00 4.69
2380 2426 5.690857 GGTAAATGAGAACTGCTATACGGAC 59.309 44.000 0.00 0.00 0.00 4.79
2381 2427 3.627732 ATGAGAACTGCTATACGGACG 57.372 47.619 0.00 0.00 0.00 4.79
2382 2428 2.635714 TGAGAACTGCTATACGGACGA 58.364 47.619 0.00 0.00 0.00 4.20
2383 2429 2.353889 TGAGAACTGCTATACGGACGAC 59.646 50.000 0.00 0.00 0.00 4.34
2384 2430 2.353889 GAGAACTGCTATACGGACGACA 59.646 50.000 0.00 0.00 0.00 4.35
2385 2431 2.097142 AGAACTGCTATACGGACGACAC 59.903 50.000 0.00 0.00 0.00 3.67
2386 2432 1.456296 ACTGCTATACGGACGACACA 58.544 50.000 0.00 0.00 0.00 3.72
2387 2433 2.022195 ACTGCTATACGGACGACACAT 58.978 47.619 0.00 0.00 0.00 3.21
2388 2434 2.426024 ACTGCTATACGGACGACACATT 59.574 45.455 0.00 0.00 0.00 2.71
2389 2435 3.628942 ACTGCTATACGGACGACACATTA 59.371 43.478 0.00 0.00 0.00 1.90
2390 2436 4.277672 ACTGCTATACGGACGACACATTAT 59.722 41.667 0.00 0.00 0.00 1.28
2391 2437 4.542735 TGCTATACGGACGACACATTATG 58.457 43.478 0.00 0.00 0.00 1.90
2392 2438 3.364023 GCTATACGGACGACACATTATGC 59.636 47.826 0.00 0.00 0.00 3.14
2393 2439 2.212869 TACGGACGACACATTATGCC 57.787 50.000 0.00 0.00 0.00 4.40
2394 2440 0.461339 ACGGACGACACATTATGCCC 60.461 55.000 0.00 0.00 0.00 5.36
2395 2441 1.487452 CGGACGACACATTATGCCCG 61.487 60.000 0.00 0.00 34.81 6.13
2396 2442 0.179094 GGACGACACATTATGCCCGA 60.179 55.000 8.07 0.00 33.43 5.14
2397 2443 1.540363 GGACGACACATTATGCCCGAT 60.540 52.381 8.07 0.00 33.43 4.18
2398 2444 2.210116 GACGACACATTATGCCCGATT 58.790 47.619 8.07 0.00 33.43 3.34
2399 2445 2.612212 GACGACACATTATGCCCGATTT 59.388 45.455 8.07 0.00 33.43 2.17
2400 2446 3.013921 ACGACACATTATGCCCGATTTT 58.986 40.909 8.07 0.00 33.43 1.82
2401 2447 3.181501 ACGACACATTATGCCCGATTTTG 60.182 43.478 8.07 0.00 33.43 2.44
2402 2448 3.064682 CGACACATTATGCCCGATTTTGA 59.935 43.478 0.00 0.00 31.50 2.69
2403 2449 4.601019 GACACATTATGCCCGATTTTGAG 58.399 43.478 0.00 0.00 0.00 3.02
2404 2450 4.269183 ACACATTATGCCCGATTTTGAGA 58.731 39.130 0.00 0.00 0.00 3.27
2405 2451 4.096382 ACACATTATGCCCGATTTTGAGAC 59.904 41.667 0.00 0.00 0.00 3.36
2406 2452 3.312421 ACATTATGCCCGATTTTGAGACG 59.688 43.478 0.00 0.00 0.00 4.18
2407 2453 2.971660 TATGCCCGATTTTGAGACGA 57.028 45.000 0.00 0.00 0.00 4.20
2408 2454 2.332063 ATGCCCGATTTTGAGACGAT 57.668 45.000 0.00 0.00 0.00 3.73
2409 2455 1.368641 TGCCCGATTTTGAGACGATG 58.631 50.000 0.00 0.00 0.00 3.84
2410 2456 0.028110 GCCCGATTTTGAGACGATGC 59.972 55.000 0.00 0.00 0.00 3.91
2411 2457 1.656652 CCCGATTTTGAGACGATGCT 58.343 50.000 0.00 0.00 0.00 3.79
2412 2458 1.328680 CCCGATTTTGAGACGATGCTG 59.671 52.381 0.00 0.00 0.00 4.41
2413 2459 2.002586 CCGATTTTGAGACGATGCTGT 58.997 47.619 0.00 0.00 0.00 4.40
2414 2460 2.222886 CCGATTTTGAGACGATGCTGTG 60.223 50.000 0.00 0.00 0.00 3.66
2415 2461 2.222886 CGATTTTGAGACGATGCTGTGG 60.223 50.000 0.00 0.00 0.00 4.17
2416 2462 2.542020 TTTTGAGACGATGCTGTGGA 57.458 45.000 0.00 0.00 0.00 4.02
2417 2463 2.768253 TTTGAGACGATGCTGTGGAT 57.232 45.000 0.00 0.00 0.00 3.41
2418 2464 2.299993 TTGAGACGATGCTGTGGATC 57.700 50.000 0.00 0.00 0.00 3.36
2419 2465 0.461548 TGAGACGATGCTGTGGATCC 59.538 55.000 4.20 4.20 0.00 3.36
2420 2466 0.461548 GAGACGATGCTGTGGATCCA 59.538 55.000 11.44 11.44 0.00 3.41
2421 2467 0.463204 AGACGATGCTGTGGATCCAG 59.537 55.000 16.81 5.54 35.49 3.86
2427 2473 3.837578 CTGTGGATCCAGCCATGC 58.162 61.111 16.81 2.30 40.68 4.06
2428 2474 1.077285 CTGTGGATCCAGCCATGCA 60.077 57.895 16.81 7.53 40.68 3.96
2429 2475 0.467474 CTGTGGATCCAGCCATGCAT 60.467 55.000 16.81 0.00 40.68 3.96
2430 2476 0.753848 TGTGGATCCAGCCATGCATG 60.754 55.000 16.81 20.19 40.68 4.06
2442 2488 3.431922 CCATGCATGGTTAGAAGCAAG 57.568 47.619 33.68 7.13 43.05 4.01
2443 2489 2.756760 CCATGCATGGTTAGAAGCAAGT 59.243 45.455 33.68 0.00 43.05 3.16
2444 2490 3.181493 CCATGCATGGTTAGAAGCAAGTC 60.181 47.826 33.68 0.00 43.05 3.01
2445 2491 3.423539 TGCATGGTTAGAAGCAAGTCT 57.576 42.857 0.00 0.00 40.14 3.24
2446 2492 3.338249 TGCATGGTTAGAAGCAAGTCTC 58.662 45.455 0.00 0.00 40.14 3.36
2447 2493 2.349886 GCATGGTTAGAAGCAAGTCTCG 59.650 50.000 0.00 0.00 40.14 4.04
2448 2494 2.080286 TGGTTAGAAGCAAGTCTCGC 57.920 50.000 0.00 0.00 32.80 5.03
2449 2495 1.343142 TGGTTAGAAGCAAGTCTCGCA 59.657 47.619 0.00 0.00 32.80 5.10
2450 2496 1.727335 GGTTAGAAGCAAGTCTCGCAC 59.273 52.381 0.00 0.00 0.00 5.34
2451 2497 2.404215 GTTAGAAGCAAGTCTCGCACA 58.596 47.619 0.00 0.00 0.00 4.57
2452 2498 2.354109 TAGAAGCAAGTCTCGCACAG 57.646 50.000 0.00 0.00 0.00 3.66
2453 2499 0.948141 AGAAGCAAGTCTCGCACAGC 60.948 55.000 0.00 0.00 0.00 4.40
2454 2500 1.905922 GAAGCAAGTCTCGCACAGCC 61.906 60.000 0.00 0.00 0.00 4.85
2455 2501 2.665008 AAGCAAGTCTCGCACAGCCA 62.665 55.000 0.00 0.00 0.00 4.75
2456 2502 2.253758 GCAAGTCTCGCACAGCCAA 61.254 57.895 0.00 0.00 0.00 4.52
2457 2503 1.580845 GCAAGTCTCGCACAGCCAAT 61.581 55.000 0.00 0.00 0.00 3.16
2458 2504 0.167470 CAAGTCTCGCACAGCCAATG 59.833 55.000 0.00 0.00 0.00 2.82
2459 2505 0.957395 AAGTCTCGCACAGCCAATGG 60.957 55.000 0.00 0.00 0.00 3.16
2460 2506 1.375908 GTCTCGCACAGCCAATGGA 60.376 57.895 2.05 0.00 0.00 3.41
2461 2507 1.078918 TCTCGCACAGCCAATGGAG 60.079 57.895 2.05 0.00 0.00 3.86
2462 2508 1.376424 CTCGCACAGCCAATGGAGT 60.376 57.895 2.05 0.00 0.00 3.85
2463 2509 0.108186 CTCGCACAGCCAATGGAGTA 60.108 55.000 2.05 0.00 0.00 2.59
2464 2510 0.541392 TCGCACAGCCAATGGAGTAT 59.459 50.000 2.05 0.00 0.00 2.12
2465 2511 0.940126 CGCACAGCCAATGGAGTATC 59.060 55.000 2.05 0.00 0.00 2.24
2466 2512 0.940126 GCACAGCCAATGGAGTATCG 59.060 55.000 2.05 0.00 34.37 2.92
2467 2513 1.743772 GCACAGCCAATGGAGTATCGT 60.744 52.381 2.05 0.00 34.37 3.73
2468 2514 2.205074 CACAGCCAATGGAGTATCGTC 58.795 52.381 2.05 0.00 34.37 4.20
2469 2515 2.111384 ACAGCCAATGGAGTATCGTCT 58.889 47.619 2.05 0.00 34.37 4.18
2470 2516 3.068165 CACAGCCAATGGAGTATCGTCTA 59.932 47.826 2.05 0.00 34.37 2.59
2471 2517 3.704566 ACAGCCAATGGAGTATCGTCTAA 59.295 43.478 2.05 0.00 34.37 2.10
2472 2518 4.202161 ACAGCCAATGGAGTATCGTCTAAG 60.202 45.833 2.05 0.00 34.37 2.18
2473 2519 4.038042 CAGCCAATGGAGTATCGTCTAAGA 59.962 45.833 2.05 0.00 34.37 2.10
2474 2520 4.649674 AGCCAATGGAGTATCGTCTAAGAA 59.350 41.667 2.05 0.00 34.37 2.52
2475 2521 5.305644 AGCCAATGGAGTATCGTCTAAGAAT 59.694 40.000 2.05 0.00 34.37 2.40
2476 2522 5.635700 GCCAATGGAGTATCGTCTAAGAATC 59.364 44.000 2.05 0.00 34.37 2.52
2477 2523 5.859114 CCAATGGAGTATCGTCTAAGAATCG 59.141 44.000 0.00 0.00 34.37 3.34
2478 2524 5.630661 ATGGAGTATCGTCTAAGAATCGG 57.369 43.478 0.00 0.00 34.37 4.18
2479 2525 3.252701 TGGAGTATCGTCTAAGAATCGGC 59.747 47.826 0.00 0.00 34.37 5.54
2480 2526 3.366171 GGAGTATCGTCTAAGAATCGGCC 60.366 52.174 0.00 0.00 34.37 6.13
2481 2527 3.220110 AGTATCGTCTAAGAATCGGCCA 58.780 45.455 2.24 0.00 0.00 5.36
2482 2528 3.827302 AGTATCGTCTAAGAATCGGCCAT 59.173 43.478 2.24 0.00 0.00 4.40
2483 2529 2.509052 TCGTCTAAGAATCGGCCATG 57.491 50.000 2.24 0.00 0.00 3.66
2484 2530 2.028876 TCGTCTAAGAATCGGCCATGA 58.971 47.619 2.24 0.00 0.00 3.07
2485 2531 2.429250 TCGTCTAAGAATCGGCCATGAA 59.571 45.455 2.24 0.00 0.00 2.57
2486 2532 3.118920 TCGTCTAAGAATCGGCCATGAAA 60.119 43.478 2.24 0.00 0.00 2.69
2487 2533 3.809832 CGTCTAAGAATCGGCCATGAAAT 59.190 43.478 2.24 0.00 0.00 2.17
2488 2534 4.319046 CGTCTAAGAATCGGCCATGAAATG 60.319 45.833 2.24 0.00 46.21 2.32
2489 2535 4.576463 GTCTAAGAATCGGCCATGAAATGT 59.424 41.667 2.24 0.00 44.81 2.71
2490 2536 4.816385 TCTAAGAATCGGCCATGAAATGTC 59.184 41.667 2.24 0.00 44.81 3.06
2491 2537 1.942657 AGAATCGGCCATGAAATGTCG 59.057 47.619 2.24 0.00 44.81 4.35
2492 2538 1.002468 GAATCGGCCATGAAATGTCGG 60.002 52.381 2.24 0.00 44.81 4.79
2493 2539 0.819259 ATCGGCCATGAAATGTCGGG 60.819 55.000 2.24 0.00 44.81 5.14
2494 2540 2.807622 GGCCATGAAATGTCGGGC 59.192 61.111 9.39 9.39 44.81 6.13
2495 2541 2.051518 GGCCATGAAATGTCGGGCA 61.052 57.895 17.46 0.00 44.81 5.36
2496 2542 1.394266 GGCCATGAAATGTCGGGCAT 61.394 55.000 17.46 0.00 44.81 4.40
2497 2543 1.317613 GCCATGAAATGTCGGGCATA 58.682 50.000 12.32 0.00 44.81 3.14
2498 2544 1.267806 GCCATGAAATGTCGGGCATAG 59.732 52.381 12.32 0.00 44.81 2.23
2499 2545 2.849942 CCATGAAATGTCGGGCATAGA 58.150 47.619 0.00 0.00 44.81 1.98
2500 2546 2.810274 CCATGAAATGTCGGGCATAGAG 59.190 50.000 0.00 0.00 44.81 2.43
2501 2547 3.470709 CATGAAATGTCGGGCATAGAGT 58.529 45.455 0.00 0.00 40.20 3.24
2502 2548 4.503123 CCATGAAATGTCGGGCATAGAGTA 60.503 45.833 0.00 0.00 44.81 2.59
2503 2549 4.322080 TGAAATGTCGGGCATAGAGTAG 57.678 45.455 0.00 0.00 36.67 2.57
2504 2550 3.704566 TGAAATGTCGGGCATAGAGTAGT 59.295 43.478 0.00 0.00 36.67 2.73
2505 2551 4.161565 TGAAATGTCGGGCATAGAGTAGTT 59.838 41.667 0.00 0.00 36.67 2.24
2506 2552 4.755266 AATGTCGGGCATAGAGTAGTTT 57.245 40.909 0.00 0.00 36.67 2.66
2507 2553 3.795623 TGTCGGGCATAGAGTAGTTTC 57.204 47.619 0.00 0.00 0.00 2.78
2508 2554 2.098607 TGTCGGGCATAGAGTAGTTTCG 59.901 50.000 0.00 0.00 0.00 3.46
2509 2555 2.098770 GTCGGGCATAGAGTAGTTTCGT 59.901 50.000 0.00 0.00 0.00 3.85
2510 2556 3.313526 GTCGGGCATAGAGTAGTTTCGTA 59.686 47.826 0.00 0.00 0.00 3.43
2511 2557 3.562973 TCGGGCATAGAGTAGTTTCGTAG 59.437 47.826 0.00 0.00 0.00 3.51
2512 2558 3.304525 CGGGCATAGAGTAGTTTCGTAGG 60.305 52.174 0.00 0.00 0.00 3.18
2513 2559 3.635836 GGGCATAGAGTAGTTTCGTAGGT 59.364 47.826 0.00 0.00 0.00 3.08
2514 2560 4.823989 GGGCATAGAGTAGTTTCGTAGGTA 59.176 45.833 0.00 0.00 0.00 3.08
2515 2561 5.300286 GGGCATAGAGTAGTTTCGTAGGTAA 59.700 44.000 0.00 0.00 0.00 2.85
2516 2562 6.183360 GGGCATAGAGTAGTTTCGTAGGTAAA 60.183 42.308 0.00 0.00 0.00 2.01
2517 2563 7.432059 GGCATAGAGTAGTTTCGTAGGTAAAT 58.568 38.462 0.00 0.00 0.00 1.40
2557 2603 7.841729 AGATCGATATACCTCCCATTAGTCATT 59.158 37.037 0.00 0.00 0.00 2.57
2581 2635 1.126113 CGTGTTTGTGCGTAGATGGAC 59.874 52.381 0.00 0.00 0.00 4.02
2594 2648 6.034591 GCGTAGATGGACCACATGTATATAC 58.965 44.000 5.89 5.89 40.72 1.47
2595 2649 6.349860 GCGTAGATGGACCACATGTATATACA 60.350 42.308 17.65 17.65 40.72 2.29
2606 2660 6.239092 CCACATGTATATACAGTCCCACGTAA 60.239 42.308 19.80 0.00 39.92 3.18
2611 2665 7.059788 TGTATATACAGTCCCACGTAAACCTA 58.940 38.462 11.62 0.00 0.00 3.08
2641 2705 6.964807 ATGTATAGTCCCACGTACATACAA 57.035 37.500 12.19 3.04 35.01 2.41
2716 2781 1.662629 CAGTAATGCGTGGCTCTTCAG 59.337 52.381 0.00 0.00 0.00 3.02
2895 3912 7.369607 TGTGATGATAATTTGTGTTTGAGTGG 58.630 34.615 0.00 0.00 0.00 4.00
2927 3944 1.931841 CTCGTGATGTCCAAGCTCATG 59.068 52.381 0.00 0.00 0.00 3.07
2969 3986 0.610174 TTCTCTGAGACGCATGCCTT 59.390 50.000 13.15 0.00 0.00 4.35
3107 4125 2.359975 GTGTCCCCCGCCAGAAAG 60.360 66.667 0.00 0.00 0.00 2.62
3114 4132 1.616994 CCCCCGCCAGAAAGAAAGATT 60.617 52.381 0.00 0.00 0.00 2.40
3117 4135 2.558359 CCCGCCAGAAAGAAAGATTTGT 59.442 45.455 0.00 0.00 0.00 2.83
3125 4143 7.205297 CCAGAAAGAAAGATTTGTTGTGTCAT 58.795 34.615 0.00 0.00 0.00 3.06
3127 4145 9.903682 CAGAAAGAAAGATTTGTTGTGTCATAT 57.096 29.630 0.00 0.00 0.00 1.78
3128 4146 9.903682 AGAAAGAAAGATTTGTTGTGTCATATG 57.096 29.630 0.00 0.00 0.00 1.78
3140 4158 7.706159 TGTTGTGTCATATGAATTATTGGCTC 58.294 34.615 7.07 0.00 0.00 4.70
3155 4173 3.063510 TGGCTCAGAAGGATCTTGTTG 57.936 47.619 0.00 0.00 32.03 3.33
3156 4174 2.373169 TGGCTCAGAAGGATCTTGTTGT 59.627 45.455 0.00 0.00 32.03 3.32
3157 4175 3.582647 TGGCTCAGAAGGATCTTGTTGTA 59.417 43.478 0.00 0.00 32.03 2.41
3158 4176 4.041567 TGGCTCAGAAGGATCTTGTTGTAA 59.958 41.667 0.00 0.00 32.03 2.41
3159 4177 5.003804 GGCTCAGAAGGATCTTGTTGTAAA 58.996 41.667 0.00 0.00 32.03 2.01
3160 4178 5.473504 GGCTCAGAAGGATCTTGTTGTAAAA 59.526 40.000 0.00 0.00 32.03 1.52
3161 4179 6.016276 GGCTCAGAAGGATCTTGTTGTAAAAA 60.016 38.462 0.00 0.00 32.03 1.94
3162 4180 6.858478 GCTCAGAAGGATCTTGTTGTAAAAAC 59.142 38.462 0.00 0.00 32.03 2.43
3163 4181 7.255277 GCTCAGAAGGATCTTGTTGTAAAAACT 60.255 37.037 0.00 0.00 32.03 2.66
3164 4182 9.273016 CTCAGAAGGATCTTGTTGTAAAAACTA 57.727 33.333 0.00 0.00 32.03 2.24
3165 4183 9.273016 TCAGAAGGATCTTGTTGTAAAAACTAG 57.727 33.333 0.00 0.00 32.03 2.57
3166 4184 8.507249 CAGAAGGATCTTGTTGTAAAAACTAGG 58.493 37.037 0.00 0.00 32.03 3.02
3167 4185 7.665974 AGAAGGATCTTGTTGTAAAAACTAGGG 59.334 37.037 0.00 0.00 29.15 3.53
3168 4186 6.849151 AGGATCTTGTTGTAAAAACTAGGGT 58.151 36.000 0.00 0.00 0.00 4.34
3169 4187 7.295340 AGGATCTTGTTGTAAAAACTAGGGTT 58.705 34.615 0.00 0.00 37.24 4.11
3170 4188 7.230712 AGGATCTTGTTGTAAAAACTAGGGTTG 59.769 37.037 0.00 0.00 35.63 3.77
3171 4189 6.702716 TCTTGTTGTAAAAACTAGGGTTGG 57.297 37.500 0.00 0.00 35.63 3.77
3172 4190 4.922471 TGTTGTAAAAACTAGGGTTGGC 57.078 40.909 0.00 0.00 35.63 4.52
3173 4191 4.538738 TGTTGTAAAAACTAGGGTTGGCT 58.461 39.130 0.00 0.00 35.63 4.75
3174 4192 4.339814 TGTTGTAAAAACTAGGGTTGGCTG 59.660 41.667 0.00 0.00 35.63 4.85
3175 4193 2.888414 TGTAAAAACTAGGGTTGGCTGC 59.112 45.455 0.00 0.00 35.63 5.25
3176 4194 0.958822 AAAAACTAGGGTTGGCTGCG 59.041 50.000 0.00 0.00 35.63 5.18
3177 4195 0.179001 AAAACTAGGGTTGGCTGCGT 60.179 50.000 0.00 0.00 35.63 5.24
3178 4196 0.179001 AAACTAGGGTTGGCTGCGTT 60.179 50.000 0.00 0.00 35.63 4.84
3179 4197 0.688487 AACTAGGGTTGGCTGCGTTA 59.312 50.000 0.00 0.00 33.96 3.18
3180 4198 0.688487 ACTAGGGTTGGCTGCGTTAA 59.312 50.000 0.00 0.00 0.00 2.01
3181 4199 1.338769 ACTAGGGTTGGCTGCGTTAAG 60.339 52.381 0.00 0.00 0.00 1.85
3199 4217 2.202932 CGCGTTGCCTCCTAGCAT 60.203 61.111 0.00 0.00 43.64 3.79
3200 4218 2.528743 CGCGTTGCCTCCTAGCATG 61.529 63.158 0.00 0.00 43.64 4.06
3201 4219 2.182842 GCGTTGCCTCCTAGCATGG 61.183 63.158 0.00 0.00 43.64 3.66
3202 4220 1.522092 CGTTGCCTCCTAGCATGGA 59.478 57.895 0.00 0.00 43.64 3.41
3203 4221 0.811616 CGTTGCCTCCTAGCATGGAC 60.812 60.000 0.00 0.00 43.64 4.02
3204 4222 0.811616 GTTGCCTCCTAGCATGGACG 60.812 60.000 0.00 0.00 43.64 4.79
3205 4223 2.280457 GCCTCCTAGCATGGACGC 60.280 66.667 0.00 4.02 32.71 5.19
3206 4224 2.423446 CCTCCTAGCATGGACGCC 59.577 66.667 0.00 0.00 31.94 5.68
3207 4225 2.136878 CCTCCTAGCATGGACGCCT 61.137 63.158 0.00 0.00 31.94 5.52
3208 4226 1.690219 CCTCCTAGCATGGACGCCTT 61.690 60.000 0.00 0.00 31.94 4.35
3209 4227 0.249657 CTCCTAGCATGGACGCCTTC 60.250 60.000 0.00 0.00 31.94 3.46
3210 4228 1.592669 CCTAGCATGGACGCCTTCG 60.593 63.158 0.00 0.00 42.43 3.79
3226 4244 6.578020 CGCCTTCGTGTTAATATAGACAAA 57.422 37.500 0.00 0.00 0.00 2.83
3227 4245 6.637365 CGCCTTCGTGTTAATATAGACAAAG 58.363 40.000 0.00 0.00 0.00 2.77
3228 4246 6.419771 GCCTTCGTGTTAATATAGACAAAGC 58.580 40.000 0.00 0.00 0.00 3.51
3229 4247 6.637365 CCTTCGTGTTAATATAGACAAAGCG 58.363 40.000 0.00 0.00 0.00 4.68
3230 4248 6.474427 CCTTCGTGTTAATATAGACAAAGCGA 59.526 38.462 0.00 0.00 0.00 4.93
3231 4249 7.169308 CCTTCGTGTTAATATAGACAAAGCGAT 59.831 37.037 0.00 0.00 0.00 4.58
3232 4250 7.997107 TCGTGTTAATATAGACAAAGCGATT 57.003 32.000 0.00 0.00 0.00 3.34
3233 4251 9.518906 TTCGTGTTAATATAGACAAAGCGATTA 57.481 29.630 0.00 0.00 0.00 1.75
3234 4252 8.961092 TCGTGTTAATATAGACAAAGCGATTAC 58.039 33.333 0.00 0.00 0.00 1.89
3235 4253 8.748582 CGTGTTAATATAGACAAAGCGATTACA 58.251 33.333 0.00 0.00 0.00 2.41
3241 4259 9.710900 AATATAGACAAAGCGATTACATGATCA 57.289 29.630 0.00 0.00 0.00 2.92
3242 4260 5.980698 AGACAAAGCGATTACATGATCAG 57.019 39.130 0.00 0.00 0.00 2.90
3243 4261 4.813161 AGACAAAGCGATTACATGATCAGG 59.187 41.667 5.68 5.68 0.00 3.86
3244 4262 3.313526 ACAAAGCGATTACATGATCAGGC 59.686 43.478 7.40 0.00 0.00 4.85
3245 4263 1.788258 AGCGATTACATGATCAGGCG 58.212 50.000 7.40 4.01 0.00 5.52
3246 4264 0.164647 GCGATTACATGATCAGGCGC 59.835 55.000 12.82 12.82 36.35 6.53
3247 4265 1.501169 CGATTACATGATCAGGCGCA 58.499 50.000 10.83 0.00 0.00 6.09
3248 4266 1.458445 CGATTACATGATCAGGCGCAG 59.542 52.381 10.83 0.00 0.00 5.18
3249 4267 1.802960 GATTACATGATCAGGCGCAGG 59.197 52.381 10.83 0.00 0.00 4.85
3250 4268 0.541392 TTACATGATCAGGCGCAGGT 59.459 50.000 10.83 0.00 33.28 4.00
3251 4269 0.179076 TACATGATCAGGCGCAGGTG 60.179 55.000 10.83 3.09 31.00 4.00
3252 4270 2.184830 CATGATCAGGCGCAGGTGG 61.185 63.158 10.83 0.00 0.00 4.61
3253 4271 2.369633 ATGATCAGGCGCAGGTGGA 61.370 57.895 10.83 0.00 0.00 4.02
3254 4272 1.703014 ATGATCAGGCGCAGGTGGAT 61.703 55.000 10.83 3.82 0.00 3.41
3255 4273 1.048160 TGATCAGGCGCAGGTGGATA 61.048 55.000 10.83 0.00 0.00 2.59
3256 4274 0.320247 GATCAGGCGCAGGTGGATAG 60.320 60.000 10.83 0.00 0.00 2.08
3257 4275 1.050988 ATCAGGCGCAGGTGGATAGT 61.051 55.000 10.83 0.00 0.00 2.12
3258 4276 1.221840 CAGGCGCAGGTGGATAGTT 59.778 57.895 10.83 0.00 0.00 2.24
3259 4277 1.091771 CAGGCGCAGGTGGATAGTTG 61.092 60.000 10.83 0.00 0.00 3.16
3260 4278 1.819632 GGCGCAGGTGGATAGTTGG 60.820 63.158 10.83 0.00 0.00 3.77
3261 4279 1.078426 GCGCAGGTGGATAGTTGGT 60.078 57.895 0.30 0.00 0.00 3.67
3262 4280 0.676782 GCGCAGGTGGATAGTTGGTT 60.677 55.000 0.30 0.00 0.00 3.67
3263 4281 1.406341 GCGCAGGTGGATAGTTGGTTA 60.406 52.381 0.30 0.00 0.00 2.85
3264 4282 2.745152 GCGCAGGTGGATAGTTGGTTAT 60.745 50.000 0.30 0.00 0.00 1.89
3265 4283 3.131396 CGCAGGTGGATAGTTGGTTATC 58.869 50.000 0.00 0.00 0.00 1.75
3266 4284 3.431626 CGCAGGTGGATAGTTGGTTATCA 60.432 47.826 0.00 0.00 32.76 2.15
3267 4285 4.523083 GCAGGTGGATAGTTGGTTATCAA 58.477 43.478 0.00 0.00 32.76 2.57
3280 4298 6.681729 TTGGTTATCAACTTGTCCTCTACT 57.318 37.500 0.00 0.00 0.00 2.57
3281 4299 6.282199 TGGTTATCAACTTGTCCTCTACTC 57.718 41.667 0.00 0.00 0.00 2.59
3282 4300 5.187186 TGGTTATCAACTTGTCCTCTACTCC 59.813 44.000 0.00 0.00 0.00 3.85
3283 4301 5.187186 GGTTATCAACTTGTCCTCTACTCCA 59.813 44.000 0.00 0.00 0.00 3.86
3284 4302 6.295688 GGTTATCAACTTGTCCTCTACTCCAA 60.296 42.308 0.00 0.00 0.00 3.53
3285 4303 4.873746 TCAACTTGTCCTCTACTCCAAG 57.126 45.455 0.00 0.00 40.05 3.61
3286 4304 3.006967 TCAACTTGTCCTCTACTCCAAGC 59.993 47.826 0.00 0.00 38.24 4.01
3287 4305 2.896039 ACTTGTCCTCTACTCCAAGCT 58.104 47.619 0.00 0.00 38.24 3.74
3288 4306 4.048970 ACTTGTCCTCTACTCCAAGCTA 57.951 45.455 0.00 0.00 38.24 3.32
3289 4307 4.615513 ACTTGTCCTCTACTCCAAGCTAT 58.384 43.478 0.00 0.00 38.24 2.97
3290 4308 5.767670 ACTTGTCCTCTACTCCAAGCTATA 58.232 41.667 0.00 0.00 38.24 1.31
3291 4309 5.595133 ACTTGTCCTCTACTCCAAGCTATAC 59.405 44.000 0.00 0.00 38.24 1.47
3292 4310 5.125367 TGTCCTCTACTCCAAGCTATACA 57.875 43.478 0.00 0.00 0.00 2.29
3293 4311 5.706447 TGTCCTCTACTCCAAGCTATACAT 58.294 41.667 0.00 0.00 0.00 2.29
3294 4312 5.536538 TGTCCTCTACTCCAAGCTATACATG 59.463 44.000 0.00 0.00 0.00 3.21
3295 4313 5.770663 GTCCTCTACTCCAAGCTATACATGA 59.229 44.000 0.00 0.00 0.00 3.07
3296 4314 6.007076 TCCTCTACTCCAAGCTATACATGAG 58.993 44.000 0.00 0.00 0.00 2.90
3297 4315 6.007076 CCTCTACTCCAAGCTATACATGAGA 58.993 44.000 0.00 0.00 0.00 3.27
3298 4316 6.663093 CCTCTACTCCAAGCTATACATGAGAT 59.337 42.308 0.00 0.00 0.00 2.75
3299 4317 7.831690 CCTCTACTCCAAGCTATACATGAGATA 59.168 40.741 0.00 0.00 0.00 1.98
3300 4318 8.800370 TCTACTCCAAGCTATACATGAGATAG 57.200 38.462 0.00 7.33 0.00 2.08
3301 4319 8.606830 TCTACTCCAAGCTATACATGAGATAGA 58.393 37.037 17.95 0.00 0.00 1.98
3302 4320 7.701539 ACTCCAAGCTATACATGAGATAGAG 57.298 40.000 17.95 8.97 0.00 2.43
3303 4321 6.663093 ACTCCAAGCTATACATGAGATAGAGG 59.337 42.308 17.95 15.40 0.00 3.69
3304 4322 6.794534 TCCAAGCTATACATGAGATAGAGGA 58.205 40.000 17.95 16.72 0.00 3.71
3305 4323 7.417554 TCCAAGCTATACATGAGATAGAGGAT 58.582 38.462 17.95 3.80 0.00 3.24
3306 4324 8.560903 TCCAAGCTATACATGAGATAGAGGATA 58.439 37.037 17.95 4.67 0.00 2.59
3307 4325 9.365906 CCAAGCTATACATGAGATAGAGGATAT 57.634 37.037 17.95 0.00 0.00 1.63
3309 4327 9.586732 AAGCTATACATGAGATAGAGGATATCC 57.413 37.037 14.41 14.41 0.00 2.59
3322 4340 3.669949 AGGATATCCTAGCCAACAACCT 58.330 45.455 23.34 0.00 46.48 3.50
3323 4341 3.392616 AGGATATCCTAGCCAACAACCTG 59.607 47.826 23.34 0.00 46.48 4.00
3324 4342 2.710096 TATCCTAGCCAACAACCTGC 57.290 50.000 0.00 0.00 0.00 4.85
3325 4343 0.392998 ATCCTAGCCAACAACCTGCG 60.393 55.000 0.00 0.00 0.00 5.18
3326 4344 2.690778 CCTAGCCAACAACCTGCGC 61.691 63.158 0.00 0.00 0.00 6.09
3327 4345 2.671619 TAGCCAACAACCTGCGCC 60.672 61.111 4.18 0.00 0.00 6.53
3328 4346 3.190738 TAGCCAACAACCTGCGCCT 62.191 57.895 4.18 0.00 0.00 5.52
3329 4347 4.043200 GCCAACAACCTGCGCCTC 62.043 66.667 4.18 0.00 0.00 4.70
3330 4348 2.594303 CCAACAACCTGCGCCTCA 60.594 61.111 4.18 0.00 0.00 3.86
3331 4349 2.192861 CCAACAACCTGCGCCTCAA 61.193 57.895 4.18 0.00 0.00 3.02
3332 4350 1.526575 CCAACAACCTGCGCCTCAAT 61.527 55.000 4.18 0.00 0.00 2.57
3333 4351 0.314935 CAACAACCTGCGCCTCAATT 59.685 50.000 4.18 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 256 2.035193 CGGATGACTCGGATGTTGAGAT 59.965 50.000 0.00 0.00 36.93 2.75
300 301 2.507324 GAGCCCGTGCGAGAAGTC 60.507 66.667 0.00 0.00 44.33 3.01
540 558 3.682292 GAAATCAGTCCGCGGGGCT 62.682 63.158 27.83 20.80 0.00 5.19
595 617 1.597461 GACCGCCCTTGCTTCTACT 59.403 57.895 0.00 0.00 34.43 2.57
597 619 2.577059 CGACCGCCCTTGCTTCTA 59.423 61.111 0.00 0.00 34.43 2.10
598 620 4.394712 CCGACCGCCCTTGCTTCT 62.395 66.667 0.00 0.00 34.43 2.85
755 783 4.077822 TCCGGCCCGTAGAAAATTTTAAA 58.922 39.130 0.85 0.00 0.00 1.52
756 784 3.683802 TCCGGCCCGTAGAAAATTTTAA 58.316 40.909 0.85 0.00 0.00 1.52
757 785 3.347077 TCCGGCCCGTAGAAAATTTTA 57.653 42.857 0.85 0.00 0.00 1.52
758 786 2.203470 TCCGGCCCGTAGAAAATTTT 57.797 45.000 2.28 2.28 0.00 1.82
759 787 1.814394 GTTCCGGCCCGTAGAAAATTT 59.186 47.619 0.85 0.00 0.00 1.82
768 796 1.300266 CGTATTTTGTTCCGGCCCGT 61.300 55.000 0.85 0.00 0.00 5.28
777 805 3.267483 CGATCAGACCCCGTATTTTGTT 58.733 45.455 0.00 0.00 0.00 2.83
778 806 2.419574 CCGATCAGACCCCGTATTTTGT 60.420 50.000 0.00 0.00 0.00 2.83
781 809 0.756903 CCCGATCAGACCCCGTATTT 59.243 55.000 0.00 0.00 0.00 1.40
782 810 1.755393 GCCCGATCAGACCCCGTATT 61.755 60.000 0.00 0.00 0.00 1.89
810 839 0.742990 CAAAATGCGGGTAGAGGCGA 60.743 55.000 0.00 0.00 0.00 5.54
864 895 2.751166 TCTTAGAGCAACTCTGGCAC 57.249 50.000 7.37 0.00 41.37 5.01
868 899 7.387397 GGATATTTGGATCTTAGAGCAACTCTG 59.613 40.741 7.37 0.00 41.37 3.35
885 916 5.010012 CCTTTTCGGAGGATTGGATATTTGG 59.990 44.000 0.00 0.00 39.25 3.28
886 917 5.827797 TCCTTTTCGGAGGATTGGATATTTG 59.172 40.000 0.00 0.00 40.87 2.32
887 918 6.013554 TCCTTTTCGGAGGATTGGATATTT 57.986 37.500 0.00 0.00 40.87 1.40
888 919 5.646692 TCCTTTTCGGAGGATTGGATATT 57.353 39.130 0.00 0.00 40.87 1.28
889 920 5.104109 TGTTCCTTTTCGGAGGATTGGATAT 60.104 40.000 4.35 0.00 44.98 1.63
890 921 4.226394 TGTTCCTTTTCGGAGGATTGGATA 59.774 41.667 4.35 0.00 44.98 2.59
891 922 3.010138 TGTTCCTTTTCGGAGGATTGGAT 59.990 43.478 4.35 0.00 44.98 3.41
892 923 2.373836 TGTTCCTTTTCGGAGGATTGGA 59.626 45.455 4.35 0.00 44.98 3.53
893 924 2.488153 GTGTTCCTTTTCGGAGGATTGG 59.512 50.000 4.35 0.00 44.98 3.16
894 925 3.146066 TGTGTTCCTTTTCGGAGGATTG 58.854 45.455 4.35 0.00 44.98 2.67
895 926 3.412386 CTGTGTTCCTTTTCGGAGGATT 58.588 45.455 4.35 0.00 44.98 3.01
896 927 2.876079 GCTGTGTTCCTTTTCGGAGGAT 60.876 50.000 4.35 0.00 44.98 3.24
897 928 1.542547 GCTGTGTTCCTTTTCGGAGGA 60.543 52.381 0.00 0.00 44.28 3.71
898 929 0.875059 GCTGTGTTCCTTTTCGGAGG 59.125 55.000 0.00 0.00 44.28 4.30
899 930 1.593196 TGCTGTGTTCCTTTTCGGAG 58.407 50.000 0.00 0.00 44.28 4.63
900 931 1.673920 GTTGCTGTGTTCCTTTTCGGA 59.326 47.619 0.00 0.00 41.06 4.55
901 932 1.403679 TGTTGCTGTGTTCCTTTTCGG 59.596 47.619 0.00 0.00 0.00 4.30
902 933 2.450160 GTGTTGCTGTGTTCCTTTTCG 58.550 47.619 0.00 0.00 0.00 3.46
928 959 2.792290 CGGTCTGCGTGATTGCGAG 61.792 63.158 0.00 0.00 37.81 5.03
1059 1099 3.323622 TGCGGGATGGAAGCAGAT 58.676 55.556 0.00 0.00 35.81 2.90
1530 1573 3.288099 GGAAGCACCCATGGATTGT 57.712 52.632 15.22 0.00 0.00 2.71
1601 1644 1.661112 GATAGGCAGAACGTTGCTGAC 59.339 52.381 23.26 21.53 43.57 3.51
1641 1684 3.507162 TGTGATGATCCAGGTTGTTGT 57.493 42.857 0.00 0.00 0.00 3.32
1644 1687 4.221262 CCATTTTGTGATGATCCAGGTTGT 59.779 41.667 0.00 0.00 0.00 3.32
2017 2060 8.910944 CAAATCATGTATCTTTCTCTTCCCAAT 58.089 33.333 0.00 0.00 0.00 3.16
2063 2106 0.534412 CTCTGGATCAACCTCGCACT 59.466 55.000 0.00 0.00 39.86 4.40
2064 2107 0.460987 CCTCTGGATCAACCTCGCAC 60.461 60.000 0.00 0.00 39.86 5.34
2169 2212 1.515521 CCTTGGCTTCCACAACCGAC 61.516 60.000 0.00 0.00 30.78 4.79
2363 2409 2.353889 TGTCGTCCGTATAGCAGTTCTC 59.646 50.000 0.00 0.00 0.00 2.87
2364 2410 2.097142 GTGTCGTCCGTATAGCAGTTCT 59.903 50.000 0.00 0.00 0.00 3.01
2365 2411 2.159476 TGTGTCGTCCGTATAGCAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
2366 2412 1.814394 TGTGTCGTCCGTATAGCAGTT 59.186 47.619 0.00 0.00 0.00 3.16
2367 2413 1.456296 TGTGTCGTCCGTATAGCAGT 58.544 50.000 0.00 0.00 0.00 4.40
2368 2414 2.776312 ATGTGTCGTCCGTATAGCAG 57.224 50.000 0.00 0.00 0.00 4.24
2369 2415 4.542735 CATAATGTGTCGTCCGTATAGCA 58.457 43.478 0.00 0.00 0.00 3.49
2370 2416 3.364023 GCATAATGTGTCGTCCGTATAGC 59.636 47.826 0.00 0.00 0.00 2.97
2371 2417 3.918591 GGCATAATGTGTCGTCCGTATAG 59.081 47.826 0.00 0.00 0.00 1.31
2372 2418 3.305539 GGGCATAATGTGTCGTCCGTATA 60.306 47.826 0.00 0.00 31.51 1.47
2373 2419 2.547218 GGGCATAATGTGTCGTCCGTAT 60.547 50.000 0.00 0.00 31.51 3.06
2374 2420 1.202440 GGGCATAATGTGTCGTCCGTA 60.202 52.381 0.00 0.00 31.51 4.02
2375 2421 0.461339 GGGCATAATGTGTCGTCCGT 60.461 55.000 0.00 0.00 31.51 4.69
2376 2422 1.487452 CGGGCATAATGTGTCGTCCG 61.487 60.000 0.00 0.00 31.51 4.79
2377 2423 0.179094 TCGGGCATAATGTGTCGTCC 60.179 55.000 0.00 0.00 31.51 4.79
2378 2424 1.865865 ATCGGGCATAATGTGTCGTC 58.134 50.000 0.00 0.00 31.51 4.20
2379 2425 2.325583 AATCGGGCATAATGTGTCGT 57.674 45.000 0.00 0.00 31.51 4.34
2380 2426 3.064682 TCAAAATCGGGCATAATGTGTCG 59.935 43.478 0.00 0.00 31.51 4.35
2381 2427 4.335315 TCTCAAAATCGGGCATAATGTGTC 59.665 41.667 0.00 0.00 0.00 3.67
2382 2428 4.096382 GTCTCAAAATCGGGCATAATGTGT 59.904 41.667 0.00 0.00 0.00 3.72
2383 2429 4.601019 GTCTCAAAATCGGGCATAATGTG 58.399 43.478 0.00 0.00 0.00 3.21
2384 2430 3.312421 CGTCTCAAAATCGGGCATAATGT 59.688 43.478 0.00 0.00 0.00 2.71
2385 2431 3.559655 TCGTCTCAAAATCGGGCATAATG 59.440 43.478 0.00 0.00 0.00 1.90
2386 2432 3.804036 TCGTCTCAAAATCGGGCATAAT 58.196 40.909 0.00 0.00 0.00 1.28
2387 2433 3.254470 TCGTCTCAAAATCGGGCATAA 57.746 42.857 0.00 0.00 0.00 1.90
2388 2434 2.971660 TCGTCTCAAAATCGGGCATA 57.028 45.000 0.00 0.00 0.00 3.14
2389 2435 1.942657 CATCGTCTCAAAATCGGGCAT 59.057 47.619 0.00 0.00 0.00 4.40
2390 2436 1.368641 CATCGTCTCAAAATCGGGCA 58.631 50.000 0.00 0.00 0.00 5.36
2391 2437 0.028110 GCATCGTCTCAAAATCGGGC 59.972 55.000 0.00 0.00 0.00 6.13
2392 2438 1.328680 CAGCATCGTCTCAAAATCGGG 59.671 52.381 0.00 0.00 0.00 5.14
2393 2439 2.002586 ACAGCATCGTCTCAAAATCGG 58.997 47.619 0.00 0.00 0.00 4.18
2394 2440 2.222886 CCACAGCATCGTCTCAAAATCG 60.223 50.000 0.00 0.00 0.00 3.34
2395 2441 3.002791 TCCACAGCATCGTCTCAAAATC 58.997 45.455 0.00 0.00 0.00 2.17
2396 2442 3.057969 TCCACAGCATCGTCTCAAAAT 57.942 42.857 0.00 0.00 0.00 1.82
2397 2443 2.542020 TCCACAGCATCGTCTCAAAA 57.458 45.000 0.00 0.00 0.00 2.44
2398 2444 2.621338 GATCCACAGCATCGTCTCAAA 58.379 47.619 0.00 0.00 0.00 2.69
2399 2445 1.134699 GGATCCACAGCATCGTCTCAA 60.135 52.381 6.95 0.00 0.00 3.02
2400 2446 0.461548 GGATCCACAGCATCGTCTCA 59.538 55.000 6.95 0.00 0.00 3.27
2401 2447 0.461548 TGGATCCACAGCATCGTCTC 59.538 55.000 11.44 0.00 0.00 3.36
2402 2448 0.463204 CTGGATCCACAGCATCGTCT 59.537 55.000 11.44 0.00 0.00 4.18
2403 2449 2.983433 CTGGATCCACAGCATCGTC 58.017 57.895 11.44 0.00 0.00 4.20
2410 2456 0.467474 ATGCATGGCTGGATCCACAG 60.467 55.000 11.44 3.05 39.25 3.66
2411 2457 0.753848 CATGCATGGCTGGATCCACA 60.754 55.000 19.40 9.13 39.25 4.17
2412 2458 1.461091 CCATGCATGGCTGGATCCAC 61.461 60.000 31.95 8.06 41.75 4.02
2413 2459 1.152631 CCATGCATGGCTGGATCCA 60.153 57.895 31.95 15.27 41.75 3.41
2414 2460 3.773370 CCATGCATGGCTGGATCC 58.227 61.111 31.95 4.20 41.75 3.36
2423 2469 3.693085 AGACTTGCTTCTAACCATGCATG 59.307 43.478 20.19 20.19 35.27 4.06
2424 2470 3.944015 GAGACTTGCTTCTAACCATGCAT 59.056 43.478 0.00 0.00 35.27 3.96
2425 2471 3.338249 GAGACTTGCTTCTAACCATGCA 58.662 45.455 0.00 0.00 0.00 3.96
2426 2472 2.349886 CGAGACTTGCTTCTAACCATGC 59.650 50.000 0.00 0.00 0.00 4.06
2427 2473 2.349886 GCGAGACTTGCTTCTAACCATG 59.650 50.000 7.49 0.00 0.00 3.66
2428 2474 2.028112 TGCGAGACTTGCTTCTAACCAT 60.028 45.455 15.76 0.00 0.00 3.55
2429 2475 1.343142 TGCGAGACTTGCTTCTAACCA 59.657 47.619 15.76 0.00 0.00 3.67
2430 2476 1.727335 GTGCGAGACTTGCTTCTAACC 59.273 52.381 15.76 0.00 0.00 2.85
2431 2477 2.404215 TGTGCGAGACTTGCTTCTAAC 58.596 47.619 15.76 5.78 0.00 2.34
2432 2478 2.677199 CTGTGCGAGACTTGCTTCTAA 58.323 47.619 15.76 0.00 0.00 2.10
2433 2479 1.670087 GCTGTGCGAGACTTGCTTCTA 60.670 52.381 15.76 0.00 0.00 2.10
2434 2480 0.948141 GCTGTGCGAGACTTGCTTCT 60.948 55.000 15.76 0.00 0.00 2.85
2435 2481 1.495069 GCTGTGCGAGACTTGCTTC 59.505 57.895 15.76 9.33 0.00 3.86
2436 2482 1.963338 GGCTGTGCGAGACTTGCTT 60.963 57.895 15.76 0.00 0.00 3.91
2437 2483 2.358003 GGCTGTGCGAGACTTGCT 60.358 61.111 15.76 0.00 0.00 3.91
2438 2484 1.580845 ATTGGCTGTGCGAGACTTGC 61.581 55.000 7.83 7.83 0.00 4.01
2439 2485 0.167470 CATTGGCTGTGCGAGACTTG 59.833 55.000 0.00 0.00 0.00 3.16
2440 2486 0.957395 CCATTGGCTGTGCGAGACTT 60.957 55.000 0.00 0.00 0.00 3.01
2441 2487 1.376424 CCATTGGCTGTGCGAGACT 60.376 57.895 0.00 0.00 0.00 3.24
2442 2488 1.364626 CTCCATTGGCTGTGCGAGAC 61.365 60.000 0.00 0.00 0.00 3.36
2443 2489 1.078918 CTCCATTGGCTGTGCGAGA 60.079 57.895 0.00 0.00 0.00 4.04
2444 2490 0.108186 TACTCCATTGGCTGTGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
2445 2491 0.541392 ATACTCCATTGGCTGTGCGA 59.459 50.000 0.00 0.00 0.00 5.10
2446 2492 0.940126 GATACTCCATTGGCTGTGCG 59.060 55.000 0.00 0.00 0.00 5.34
2447 2493 0.940126 CGATACTCCATTGGCTGTGC 59.060 55.000 0.00 0.00 0.00 4.57
2448 2494 2.159043 AGACGATACTCCATTGGCTGTG 60.159 50.000 0.00 0.00 34.74 3.66
2449 2495 2.111384 AGACGATACTCCATTGGCTGT 58.889 47.619 0.00 2.26 34.74 4.40
2450 2496 2.898729 AGACGATACTCCATTGGCTG 57.101 50.000 0.00 0.00 34.74 4.85
2451 2497 4.215908 TCTTAGACGATACTCCATTGGCT 58.784 43.478 0.00 0.00 39.93 4.75
2452 2498 4.585955 TCTTAGACGATACTCCATTGGC 57.414 45.455 0.00 0.00 0.00 4.52
2453 2499 5.859114 CGATTCTTAGACGATACTCCATTGG 59.141 44.000 0.00 0.00 0.00 3.16
2454 2500 5.859114 CCGATTCTTAGACGATACTCCATTG 59.141 44.000 0.00 0.00 0.00 2.82
2455 2501 5.565045 GCCGATTCTTAGACGATACTCCATT 60.565 44.000 0.00 0.00 0.00 3.16
2456 2502 4.082679 GCCGATTCTTAGACGATACTCCAT 60.083 45.833 0.00 0.00 0.00 3.41
2457 2503 3.252701 GCCGATTCTTAGACGATACTCCA 59.747 47.826 0.00 0.00 0.00 3.86
2458 2504 3.366171 GGCCGATTCTTAGACGATACTCC 60.366 52.174 0.00 0.00 0.00 3.85
2459 2505 3.252701 TGGCCGATTCTTAGACGATACTC 59.747 47.826 0.00 0.00 0.00 2.59
2460 2506 3.220110 TGGCCGATTCTTAGACGATACT 58.780 45.455 0.00 0.00 0.00 2.12
2461 2507 3.637998 TGGCCGATTCTTAGACGATAC 57.362 47.619 0.00 0.00 0.00 2.24
2462 2508 3.824443 TCATGGCCGATTCTTAGACGATA 59.176 43.478 0.00 0.00 0.00 2.92
2463 2509 2.628178 TCATGGCCGATTCTTAGACGAT 59.372 45.455 0.00 0.00 0.00 3.73
2464 2510 2.028876 TCATGGCCGATTCTTAGACGA 58.971 47.619 0.00 0.00 0.00 4.20
2465 2511 2.509052 TCATGGCCGATTCTTAGACG 57.491 50.000 0.00 0.00 0.00 4.18
2466 2512 4.576463 ACATTTCATGGCCGATTCTTAGAC 59.424 41.667 0.00 0.00 33.60 2.59
2467 2513 4.780815 ACATTTCATGGCCGATTCTTAGA 58.219 39.130 0.00 0.00 33.60 2.10
2468 2514 4.319046 CGACATTTCATGGCCGATTCTTAG 60.319 45.833 0.00 0.00 33.66 2.18
2469 2515 3.559655 CGACATTTCATGGCCGATTCTTA 59.440 43.478 0.00 0.00 33.66 2.10
2470 2516 2.355756 CGACATTTCATGGCCGATTCTT 59.644 45.455 0.00 0.00 33.66 2.52
2471 2517 1.942657 CGACATTTCATGGCCGATTCT 59.057 47.619 0.00 0.00 33.66 2.40
2472 2518 1.002468 CCGACATTTCATGGCCGATTC 60.002 52.381 0.00 0.00 33.66 2.52
2473 2519 1.024271 CCGACATTTCATGGCCGATT 58.976 50.000 0.00 0.00 33.66 3.34
2474 2520 0.819259 CCCGACATTTCATGGCCGAT 60.819 55.000 0.00 0.00 33.66 4.18
2475 2521 1.451207 CCCGACATTTCATGGCCGA 60.451 57.895 0.00 0.00 33.66 5.54
2476 2522 3.110139 CCCGACATTTCATGGCCG 58.890 61.111 0.00 0.00 33.66 6.13
2477 2523 1.394266 ATGCCCGACATTTCATGGCC 61.394 55.000 0.00 0.00 38.16 5.36
2478 2524 1.267806 CTATGCCCGACATTTCATGGC 59.732 52.381 3.09 3.09 40.38 4.40
2479 2525 2.810274 CTCTATGCCCGACATTTCATGG 59.190 50.000 0.00 0.00 40.38 3.66
2480 2526 3.470709 ACTCTATGCCCGACATTTCATG 58.529 45.455 0.00 0.00 40.38 3.07
2481 2527 3.845781 ACTCTATGCCCGACATTTCAT 57.154 42.857 0.00 0.00 40.38 2.57
2482 2528 3.704566 ACTACTCTATGCCCGACATTTCA 59.295 43.478 0.00 0.00 40.38 2.69
2483 2529 4.323553 ACTACTCTATGCCCGACATTTC 57.676 45.455 0.00 0.00 40.38 2.17
2484 2530 4.755266 AACTACTCTATGCCCGACATTT 57.245 40.909 0.00 0.00 40.38 2.32
2485 2531 4.694339 GAAACTACTCTATGCCCGACATT 58.306 43.478 0.00 0.00 40.38 2.71
2486 2532 3.243434 CGAAACTACTCTATGCCCGACAT 60.243 47.826 0.00 0.00 43.18 3.06
2487 2533 2.098607 CGAAACTACTCTATGCCCGACA 59.901 50.000 0.00 0.00 0.00 4.35
2488 2534 2.098770 ACGAAACTACTCTATGCCCGAC 59.901 50.000 0.00 0.00 0.00 4.79
2489 2535 2.372264 ACGAAACTACTCTATGCCCGA 58.628 47.619 0.00 0.00 0.00 5.14
2490 2536 2.865343 ACGAAACTACTCTATGCCCG 57.135 50.000 0.00 0.00 0.00 6.13
2491 2537 3.635836 ACCTACGAAACTACTCTATGCCC 59.364 47.826 0.00 0.00 0.00 5.36
2492 2538 4.915158 ACCTACGAAACTACTCTATGCC 57.085 45.455 0.00 0.00 0.00 4.40
2493 2539 8.753175 CAATTTACCTACGAAACTACTCTATGC 58.247 37.037 0.00 0.00 0.00 3.14
2494 2540 8.753175 GCAATTTACCTACGAAACTACTCTATG 58.247 37.037 0.00 0.00 0.00 2.23
2495 2541 8.693625 AGCAATTTACCTACGAAACTACTCTAT 58.306 33.333 0.00 0.00 0.00 1.98
2496 2542 7.972277 CAGCAATTTACCTACGAAACTACTCTA 59.028 37.037 0.00 0.00 0.00 2.43
2497 2543 6.812160 CAGCAATTTACCTACGAAACTACTCT 59.188 38.462 0.00 0.00 0.00 3.24
2498 2544 6.810182 TCAGCAATTTACCTACGAAACTACTC 59.190 38.462 0.00 0.00 0.00 2.59
2499 2545 6.694447 TCAGCAATTTACCTACGAAACTACT 58.306 36.000 0.00 0.00 0.00 2.57
2500 2546 6.956299 TCAGCAATTTACCTACGAAACTAC 57.044 37.500 0.00 0.00 0.00 2.73
2501 2547 7.966246 TTTCAGCAATTTACCTACGAAACTA 57.034 32.000 0.00 0.00 0.00 2.24
2502 2548 6.870971 TTTCAGCAATTTACCTACGAAACT 57.129 33.333 0.00 0.00 0.00 2.66
2503 2549 7.858879 TCTTTTTCAGCAATTTACCTACGAAAC 59.141 33.333 0.00 0.00 0.00 2.78
2504 2550 7.932335 TCTTTTTCAGCAATTTACCTACGAAA 58.068 30.769 0.00 0.00 0.00 3.46
2505 2551 7.499321 TCTTTTTCAGCAATTTACCTACGAA 57.501 32.000 0.00 0.00 0.00 3.85
2506 2552 7.681939 ATCTTTTTCAGCAATTTACCTACGA 57.318 32.000 0.00 0.00 0.00 3.43
2507 2553 8.879759 TCTATCTTTTTCAGCAATTTACCTACG 58.120 33.333 0.00 0.00 0.00 3.51
2510 2556 8.616076 CGATCTATCTTTTTCAGCAATTTACCT 58.384 33.333 0.00 0.00 0.00 3.08
2511 2557 8.612619 TCGATCTATCTTTTTCAGCAATTTACC 58.387 33.333 0.00 0.00 0.00 2.85
2517 2563 9.424319 GGTATATCGATCTATCTTTTTCAGCAA 57.576 33.333 0.00 0.00 0.00 3.91
2557 2603 2.488639 TCTACGCACAAACACGTACA 57.511 45.000 0.00 0.00 43.35 2.90
2581 2635 4.038763 ACGTGGGACTGTATATACATGTGG 59.961 45.833 15.81 7.11 35.36 4.17
2623 2677 6.964807 ACATATTGTATGTACGTGGGACTA 57.035 37.500 0.00 0.00 0.00 2.59
2641 2705 7.828508 AAATGTCAGATGGCAATGTACATAT 57.171 32.000 9.21 0.00 31.21 1.78
2716 2781 3.985008 AGTTAACAAAACATTTCCCCGC 58.015 40.909 8.61 0.00 0.00 6.13
2851 3868 1.140312 AGCTGAGGGGACAAACAGAA 58.860 50.000 0.00 0.00 32.70 3.02
2895 3912 0.321653 ATCACGAGAACTTGCACCCC 60.322 55.000 0.00 0.00 0.00 4.95
3114 4132 8.065473 AGCCAATAATTCATATGACACAACAA 57.935 30.769 4.48 0.00 0.00 2.83
3117 4135 7.774625 TCTGAGCCAATAATTCATATGACACAA 59.225 33.333 4.48 0.00 0.00 3.33
3125 4143 7.982252 AGATCCTTCTGAGCCAATAATTCATA 58.018 34.615 0.00 0.00 0.00 2.15
3127 4145 6.257994 AGATCCTTCTGAGCCAATAATTCA 57.742 37.500 0.00 0.00 0.00 2.57
3128 4146 6.545298 ACAAGATCCTTCTGAGCCAATAATTC 59.455 38.462 0.00 0.00 30.72 2.17
3140 4158 8.507249 CCTAGTTTTTACAACAAGATCCTTCTG 58.493 37.037 0.00 0.00 30.72 3.02
3155 4173 2.095415 CGCAGCCAACCCTAGTTTTTAC 60.095 50.000 0.00 0.00 32.45 2.01
3156 4174 2.156098 CGCAGCCAACCCTAGTTTTTA 58.844 47.619 0.00 0.00 32.45 1.52
3157 4175 0.958822 CGCAGCCAACCCTAGTTTTT 59.041 50.000 0.00 0.00 32.45 1.94
3158 4176 0.179001 ACGCAGCCAACCCTAGTTTT 60.179 50.000 0.00 0.00 32.45 2.43
3159 4177 0.179001 AACGCAGCCAACCCTAGTTT 60.179 50.000 0.00 0.00 32.45 2.66
3160 4178 0.688487 TAACGCAGCCAACCCTAGTT 59.312 50.000 0.00 0.00 36.33 2.24
3161 4179 0.688487 TTAACGCAGCCAACCCTAGT 59.312 50.000 0.00 0.00 0.00 2.57
3162 4180 1.369625 CTTAACGCAGCCAACCCTAG 58.630 55.000 0.00 0.00 0.00 3.02
3163 4181 0.675522 GCTTAACGCAGCCAACCCTA 60.676 55.000 0.00 0.00 38.92 3.53
3164 4182 1.971695 GCTTAACGCAGCCAACCCT 60.972 57.895 0.00 0.00 38.92 4.34
3165 4183 2.566529 GCTTAACGCAGCCAACCC 59.433 61.111 0.00 0.00 38.92 4.11
3166 4184 2.175811 CGCTTAACGCAGCCAACC 59.824 61.111 0.00 0.00 39.08 3.77
3176 4194 0.738412 TAGGAGGCAACGCGCTTAAC 60.738 55.000 5.73 0.00 46.39 2.01
3177 4195 0.459585 CTAGGAGGCAACGCGCTTAA 60.460 55.000 5.73 0.00 46.39 1.85
3178 4196 1.141019 CTAGGAGGCAACGCGCTTA 59.859 57.895 5.73 0.00 46.39 3.09
3179 4197 2.125512 CTAGGAGGCAACGCGCTT 60.126 61.111 5.73 0.00 46.39 4.68
3180 4198 4.821589 GCTAGGAGGCAACGCGCT 62.822 66.667 5.73 0.00 46.39 5.92
3182 4200 2.202932 ATGCTAGGAGGCAACGCG 60.203 61.111 3.53 3.53 45.68 6.01
3183 4201 2.182842 CCATGCTAGGAGGCAACGC 61.183 63.158 0.00 0.00 45.68 4.84
3184 4202 0.811616 GTCCATGCTAGGAGGCAACG 60.812 60.000 0.00 0.00 45.68 4.10
3185 4203 0.811616 CGTCCATGCTAGGAGGCAAC 60.812 60.000 5.08 0.00 45.68 4.17
3186 4204 1.522092 CGTCCATGCTAGGAGGCAA 59.478 57.895 5.08 0.00 45.68 4.52
3187 4205 3.220222 CGTCCATGCTAGGAGGCA 58.780 61.111 5.08 0.00 46.63 4.75
3189 4207 1.690219 AAGGCGTCCATGCTAGGAGG 61.690 60.000 11.69 11.69 44.37 4.30
3190 4208 0.249657 GAAGGCGTCCATGCTAGGAG 60.250 60.000 0.00 0.00 38.64 3.69
3191 4209 1.823295 GAAGGCGTCCATGCTAGGA 59.177 57.895 0.00 0.00 34.64 2.94
3192 4210 1.592669 CGAAGGCGTCCATGCTAGG 60.593 63.158 0.00 0.00 34.52 3.02
3193 4211 4.018609 CGAAGGCGTCCATGCTAG 57.981 61.111 0.00 0.00 34.52 3.42
3203 4221 6.578020 TTTGTCTATATTAACACGAAGGCG 57.422 37.500 0.00 0.00 44.79 5.52
3204 4222 6.419771 GCTTTGTCTATATTAACACGAAGGC 58.580 40.000 0.00 0.00 32.76 4.35
3205 4223 6.474427 TCGCTTTGTCTATATTAACACGAAGG 59.526 38.462 0.00 0.00 32.76 3.46
3206 4224 7.445900 TCGCTTTGTCTATATTAACACGAAG 57.554 36.000 0.00 0.00 34.54 3.79
3207 4225 7.997107 ATCGCTTTGTCTATATTAACACGAA 57.003 32.000 0.00 0.00 29.27 3.85
3208 4226 7.997107 AATCGCTTTGTCTATATTAACACGA 57.003 32.000 0.00 0.00 0.00 4.35
3209 4227 8.748582 TGTAATCGCTTTGTCTATATTAACACG 58.251 33.333 0.00 0.00 0.00 4.49
3215 4233 9.710900 TGATCATGTAATCGCTTTGTCTATATT 57.289 29.630 0.00 0.00 0.00 1.28
3216 4234 9.363763 CTGATCATGTAATCGCTTTGTCTATAT 57.636 33.333 0.00 0.00 0.00 0.86
3217 4235 7.814587 CCTGATCATGTAATCGCTTTGTCTATA 59.185 37.037 0.00 0.00 0.00 1.31
3218 4236 6.648310 CCTGATCATGTAATCGCTTTGTCTAT 59.352 38.462 0.00 0.00 0.00 1.98
3219 4237 5.985530 CCTGATCATGTAATCGCTTTGTCTA 59.014 40.000 0.00 0.00 0.00 2.59
3220 4238 4.813161 CCTGATCATGTAATCGCTTTGTCT 59.187 41.667 0.00 0.00 0.00 3.41
3221 4239 4.553547 GCCTGATCATGTAATCGCTTTGTC 60.554 45.833 0.00 0.00 0.00 3.18
3222 4240 3.313526 GCCTGATCATGTAATCGCTTTGT 59.686 43.478 0.00 0.00 0.00 2.83
3223 4241 3.605461 CGCCTGATCATGTAATCGCTTTG 60.605 47.826 0.00 0.00 0.00 2.77
3224 4242 2.545526 CGCCTGATCATGTAATCGCTTT 59.454 45.455 0.00 0.00 0.00 3.51
3225 4243 2.138320 CGCCTGATCATGTAATCGCTT 58.862 47.619 0.00 0.00 0.00 4.68
3226 4244 1.788258 CGCCTGATCATGTAATCGCT 58.212 50.000 0.00 0.00 0.00 4.93
3227 4245 0.164647 GCGCCTGATCATGTAATCGC 59.835 55.000 0.00 0.25 34.61 4.58
3228 4246 1.458445 CTGCGCCTGATCATGTAATCG 59.542 52.381 4.18 0.00 0.00 3.34
3229 4247 1.802960 CCTGCGCCTGATCATGTAATC 59.197 52.381 4.18 0.00 0.00 1.75
3230 4248 1.141657 ACCTGCGCCTGATCATGTAAT 59.858 47.619 4.18 0.00 0.00 1.89
3231 4249 0.541392 ACCTGCGCCTGATCATGTAA 59.459 50.000 4.18 0.00 0.00 2.41
3232 4250 0.179076 CACCTGCGCCTGATCATGTA 60.179 55.000 4.18 0.00 0.00 2.29
3233 4251 1.450848 CACCTGCGCCTGATCATGT 60.451 57.895 4.18 0.00 0.00 3.21
3234 4252 2.184830 CCACCTGCGCCTGATCATG 61.185 63.158 4.18 0.00 0.00 3.07
3235 4253 1.703014 ATCCACCTGCGCCTGATCAT 61.703 55.000 4.18 0.00 0.00 2.45
3236 4254 1.048160 TATCCACCTGCGCCTGATCA 61.048 55.000 4.18 0.00 0.00 2.92
3237 4255 0.320247 CTATCCACCTGCGCCTGATC 60.320 60.000 4.18 0.00 0.00 2.92
3238 4256 1.050988 ACTATCCACCTGCGCCTGAT 61.051 55.000 4.18 2.13 0.00 2.90
3239 4257 1.264749 AACTATCCACCTGCGCCTGA 61.265 55.000 4.18 0.00 0.00 3.86
3240 4258 1.091771 CAACTATCCACCTGCGCCTG 61.092 60.000 4.18 0.00 0.00 4.85
3241 4259 1.221840 CAACTATCCACCTGCGCCT 59.778 57.895 4.18 0.00 0.00 5.52
3242 4260 1.819632 CCAACTATCCACCTGCGCC 60.820 63.158 4.18 0.00 0.00 6.53
3243 4261 0.676782 AACCAACTATCCACCTGCGC 60.677 55.000 0.00 0.00 0.00 6.09
3244 4262 2.684001 TAACCAACTATCCACCTGCG 57.316 50.000 0.00 0.00 0.00 5.18
3245 4263 4.150897 TGATAACCAACTATCCACCTGC 57.849 45.455 0.00 0.00 0.00 4.85
3257 4275 6.295688 GGAGTAGAGGACAAGTTGATAACCAA 60.296 42.308 10.54 0.00 0.00 3.67
3258 4276 5.187186 GGAGTAGAGGACAAGTTGATAACCA 59.813 44.000 10.54 0.00 0.00 3.67
3259 4277 5.187186 TGGAGTAGAGGACAAGTTGATAACC 59.813 44.000 10.54 7.36 0.00 2.85
3260 4278 6.282199 TGGAGTAGAGGACAAGTTGATAAC 57.718 41.667 10.54 0.00 0.00 1.89
3261 4279 6.574465 GCTTGGAGTAGAGGACAAGTTGATAA 60.574 42.308 10.54 0.00 41.65 1.75
3262 4280 5.105310 GCTTGGAGTAGAGGACAAGTTGATA 60.105 44.000 10.54 0.00 41.65 2.15
3263 4281 4.323104 GCTTGGAGTAGAGGACAAGTTGAT 60.323 45.833 10.54 0.00 41.65 2.57
3264 4282 3.006967 GCTTGGAGTAGAGGACAAGTTGA 59.993 47.826 10.54 0.00 41.65 3.18
3265 4283 3.007398 AGCTTGGAGTAGAGGACAAGTTG 59.993 47.826 0.00 0.00 41.65 3.16
3266 4284 3.243724 AGCTTGGAGTAGAGGACAAGTT 58.756 45.455 0.00 0.00 41.65 2.66
3267 4285 2.896039 AGCTTGGAGTAGAGGACAAGT 58.104 47.619 0.00 0.00 41.65 3.16
3268 4286 5.594725 TGTATAGCTTGGAGTAGAGGACAAG 59.405 44.000 0.00 0.00 42.31 3.16
3269 4287 5.516044 TGTATAGCTTGGAGTAGAGGACAA 58.484 41.667 0.00 0.00 0.00 3.18
3270 4288 5.125367 TGTATAGCTTGGAGTAGAGGACA 57.875 43.478 0.00 0.00 0.00 4.02
3271 4289 5.770663 TCATGTATAGCTTGGAGTAGAGGAC 59.229 44.000 0.00 0.00 0.00 3.85
3272 4290 5.953571 TCATGTATAGCTTGGAGTAGAGGA 58.046 41.667 0.00 0.00 0.00 3.71
3273 4291 6.007076 TCTCATGTATAGCTTGGAGTAGAGG 58.993 44.000 0.00 0.00 0.00 3.69
3274 4292 7.701539 ATCTCATGTATAGCTTGGAGTAGAG 57.298 40.000 0.00 0.00 0.00 2.43
3275 4293 8.606830 TCTATCTCATGTATAGCTTGGAGTAGA 58.393 37.037 0.00 0.00 0.00 2.59
3276 4294 8.800370 TCTATCTCATGTATAGCTTGGAGTAG 57.200 38.462 0.00 0.00 0.00 2.57
3277 4295 7.831690 CCTCTATCTCATGTATAGCTTGGAGTA 59.168 40.741 0.00 0.00 0.00 2.59
3278 4296 6.663093 CCTCTATCTCATGTATAGCTTGGAGT 59.337 42.308 0.00 0.00 0.00 3.85
3279 4297 6.889177 TCCTCTATCTCATGTATAGCTTGGAG 59.111 42.308 0.00 0.00 0.00 3.86
3280 4298 6.794534 TCCTCTATCTCATGTATAGCTTGGA 58.205 40.000 0.00 13.10 0.00 3.53
3281 4299 7.658525 ATCCTCTATCTCATGTATAGCTTGG 57.341 40.000 0.00 11.75 0.00 3.61
3283 4301 9.586732 GGATATCCTCTATCTCATGTATAGCTT 57.413 37.037 14.97 0.00 0.00 3.74
3284 4302 8.958995 AGGATATCCTCTATCTCATGTATAGCT 58.041 37.037 19.18 0.00 44.77 3.32
3288 4306 8.170061 GGCTAGGATATCCTCTATCTCATGTAT 58.830 40.741 27.86 1.54 44.77 2.29
3289 4307 7.129504 TGGCTAGGATATCCTCTATCTCATGTA 59.870 40.741 27.86 4.95 44.77 2.29
3290 4308 6.068557 TGGCTAGGATATCCTCTATCTCATGT 60.069 42.308 27.86 2.21 44.77 3.21
3291 4309 6.372104 TGGCTAGGATATCCTCTATCTCATG 58.628 44.000 27.86 8.85 44.77 3.07
3292 4310 6.604675 TGGCTAGGATATCCTCTATCTCAT 57.395 41.667 27.86 3.53 44.77 2.90
3293 4311 6.191315 GTTGGCTAGGATATCCTCTATCTCA 58.809 44.000 27.86 14.84 44.77 3.27
3294 4312 6.191315 TGTTGGCTAGGATATCCTCTATCTC 58.809 44.000 27.86 15.17 44.77 2.75
3295 4313 6.159172 TGTTGGCTAGGATATCCTCTATCT 57.841 41.667 27.86 5.84 44.77 1.98
3296 4314 6.351456 GGTTGTTGGCTAGGATATCCTCTATC 60.351 46.154 27.86 15.54 44.77 2.08
3297 4315 5.485708 GGTTGTTGGCTAGGATATCCTCTAT 59.514 44.000 27.86 7.02 44.77 1.98
3298 4316 4.838986 GGTTGTTGGCTAGGATATCCTCTA 59.161 45.833 27.86 10.79 44.77 2.43
3299 4317 3.648545 GGTTGTTGGCTAGGATATCCTCT 59.351 47.826 27.86 8.19 44.77 3.69
3300 4318 3.648545 AGGTTGTTGGCTAGGATATCCTC 59.351 47.826 27.86 14.33 44.77 3.71
3302 4320 3.744660 CAGGTTGTTGGCTAGGATATCC 58.255 50.000 14.41 14.41 0.00 2.59
3303 4321 3.142174 GCAGGTTGTTGGCTAGGATATC 58.858 50.000 0.00 0.00 0.00 1.63
3304 4322 2.485479 CGCAGGTTGTTGGCTAGGATAT 60.485 50.000 0.00 0.00 0.00 1.63
3305 4323 1.134521 CGCAGGTTGTTGGCTAGGATA 60.135 52.381 0.00 0.00 0.00 2.59
3306 4324 0.392998 CGCAGGTTGTTGGCTAGGAT 60.393 55.000 0.00 0.00 0.00 3.24
3307 4325 1.003839 CGCAGGTTGTTGGCTAGGA 60.004 57.895 0.00 0.00 0.00 2.94
3308 4326 2.690778 GCGCAGGTTGTTGGCTAGG 61.691 63.158 0.30 0.00 0.00 3.02
3309 4327 2.690778 GGCGCAGGTTGTTGGCTAG 61.691 63.158 10.83 0.00 0.00 3.42
3310 4328 2.671619 GGCGCAGGTTGTTGGCTA 60.672 61.111 10.83 0.00 0.00 3.93
3311 4329 4.586235 AGGCGCAGGTTGTTGGCT 62.586 61.111 10.83 0.00 0.00 4.75
3312 4330 4.043200 GAGGCGCAGGTTGTTGGC 62.043 66.667 10.83 0.00 0.00 4.52
3313 4331 1.526575 ATTGAGGCGCAGGTTGTTGG 61.527 55.000 10.83 0.00 0.00 3.77
3314 4332 0.314935 AATTGAGGCGCAGGTTGTTG 59.685 50.000 10.83 0.00 0.00 3.33
3315 4333 2.732289 AATTGAGGCGCAGGTTGTT 58.268 47.368 10.83 0.00 0.00 2.83
3316 4334 4.500265 AATTGAGGCGCAGGTTGT 57.500 50.000 10.83 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.