Multiple sequence alignment - TraesCS6D01G150000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G150000 chr6D 100.000 3311 0 0 1 3311 123795954 123799264 0.000000e+00 6115.0
1 TraesCS6D01G150000 chr6D 89.600 125 10 3 1 122 291973929 291973805 4.420000e-34 156.0
2 TraesCS6D01G150000 chr6B 92.213 1862 72 33 695 2495 219012230 219014079 0.000000e+00 2567.0
3 TraesCS6D01G150000 chr6B 91.763 777 25 10 2540 3311 219014085 219014827 0.000000e+00 1044.0
4 TraesCS6D01G150000 chr6A 97.192 926 26 0 1416 2341 157427209 157426284 0.000000e+00 1567.0
5 TraesCS6D01G150000 chr6A 91.198 818 32 9 2496 3311 157425330 157424551 0.000000e+00 1075.0
6 TraesCS6D01G150000 chr6A 91.667 576 24 5 866 1418 157441208 157440634 0.000000e+00 776.0
7 TraesCS6D01G150000 chr6A 84.615 429 56 7 279 701 57890954 57891378 5.110000e-113 418.0
8 TraesCS6D01G150000 chr6A 83.649 422 58 8 287 699 200242658 200242239 1.440000e-103 387.0
9 TraesCS6D01G150000 chr6A 94.783 115 4 1 2387 2501 157426156 157426044 9.440000e-41 178.0
10 TraesCS6D01G150000 chr6A 91.398 93 5 1 695 787 157441466 157441377 1.250000e-24 124.0
11 TraesCS6D01G150000 chr4A 84.793 434 59 7 273 701 703320273 703319842 2.360000e-116 429.0
12 TraesCS6D01G150000 chr3A 84.746 413 59 4 287 697 503096547 503096137 8.550000e-111 411.0
13 TraesCS6D01G150000 chr5D 84.890 364 46 9 342 699 497927366 497927726 3.140000e-95 359.0
14 TraesCS6D01G150000 chr5D 90.811 185 11 5 121 304 249878403 249878582 3.300000e-60 243.0
15 TraesCS6D01G150000 chr5D 92.126 127 9 1 1 127 205125078 205124953 9.440000e-41 178.0
16 TraesCS6D01G150000 chr1B 82.045 440 57 13 273 697 14127613 14128045 4.060000e-94 355.0
17 TraesCS6D01G150000 chr1B 93.333 165 10 1 121 284 14127384 14127548 3.300000e-60 243.0
18 TraesCS6D01G150000 chr1B 90.811 185 12 4 120 304 606684789 606684610 3.300000e-60 243.0
19 TraesCS6D01G150000 chr1B 91.339 127 11 0 1 127 14054803 14054929 1.220000e-39 174.0
20 TraesCS6D01G150000 chr5B 81.364 440 59 13 273 699 16594276 16593847 1.470000e-88 337.0
21 TraesCS6D01G150000 chr5B 80.549 437 62 14 273 699 16674597 16674174 6.900000e-82 315.0
22 TraesCS6D01G150000 chr5B 80.045 441 64 13 273 699 16626436 16626006 4.150000e-79 305.0
23 TraesCS6D01G150000 chr7D 95.758 165 7 0 120 284 495296056 495296220 1.960000e-67 267.0
24 TraesCS6D01G150000 chr4B 94.545 165 9 0 120 284 602694347 602694511 4.240000e-64 255.0
25 TraesCS6D01G150000 chr4B 91.045 67 5 1 968 1034 122212030 122211965 4.550000e-14 89.8
26 TraesCS6D01G150000 chr3D 94.545 165 8 1 120 284 15453151 15452988 1.520000e-63 254.0
27 TraesCS6D01G150000 chr3D 90.811 185 11 5 121 304 110175495 110175316 3.300000e-60 243.0
28 TraesCS6D01G150000 chr3D 93.333 165 10 1 121 284 241678327 241678491 3.300000e-60 243.0
29 TraesCS6D01G150000 chr3D 96.094 128 4 1 1652 1778 405819884 405820011 1.200000e-49 207.0
30 TraesCS6D01G150000 chr3D 93.333 120 8 0 6 125 611881956 611882075 9.440000e-41 178.0
31 TraesCS6D01G150000 chr1D 90.811 185 12 4 121 304 430421567 430421387 3.300000e-60 243.0
32 TraesCS6D01G150000 chr1D 94.495 109 6 0 20 128 430422354 430422246 5.680000e-38 169.0
33 TraesCS6D01G150000 chr1D 92.537 67 4 1 968 1034 19462617 19462682 9.780000e-16 95.3
34 TraesCS6D01G150000 chr7A 94.393 107 6 0 19 125 731692315 731692421 7.350000e-37 165.0
35 TraesCS6D01G150000 chr7A 93.578 109 5 2 20 127 686099047 686099154 9.510000e-36 161.0
36 TraesCS6D01G150000 chr5A 88.976 127 12 2 1 127 345227965 345228089 4.420000e-34 156.0
37 TraesCS6D01G150000 chr3B 88.281 128 13 2 1 127 532640640 532640514 5.720000e-33 152.0
38 TraesCS6D01G150000 chr1A 92.537 67 4 1 968 1034 58935539 58935474 9.780000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G150000 chr6D 123795954 123799264 3310 False 6115.0 6115 100.0000 1 3311 1 chr6D.!!$F1 3310
1 TraesCS6D01G150000 chr6B 219012230 219014827 2597 False 1805.5 2567 91.9880 695 3311 2 chr6B.!!$F1 2616
2 TraesCS6D01G150000 chr6A 157424551 157427209 2658 True 940.0 1567 94.3910 1416 3311 3 chr6A.!!$R2 1895
3 TraesCS6D01G150000 chr6A 157440634 157441466 832 True 450.0 776 91.5325 695 1418 2 chr6A.!!$R3 723
4 TraesCS6D01G150000 chr1B 14127384 14128045 661 False 299.0 355 87.6890 121 697 2 chr1B.!!$F2 576
5 TraesCS6D01G150000 chr1D 430421387 430422354 967 True 206.0 243 92.6530 20 304 2 chr1D.!!$R1 284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 1343 0.099082 GCCGGTTCGTCTCTAGACAG 59.901 60.0 1.9 3.82 44.99 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 4202 0.250295 TCAACCTGCTTTCTCCGGTG 60.25 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.659874 GCCACCGACACGCGTTTG 62.660 66.667 10.22 0.81 38.67 2.93
18 19 4.007940 CCACCGACACGCGTTTGG 62.008 66.667 10.22 16.80 38.67 3.28
117 118 1.639298 GGACGCCACAGCTCACATTC 61.639 60.000 0.00 0.00 36.60 2.67
289 977 3.155167 CGGAGCTCCAGGTACCCC 61.155 72.222 31.67 2.66 35.14 4.95
290 978 2.040606 GGAGCTCCAGGTACCCCA 59.959 66.667 28.43 0.00 35.64 4.96
291 979 2.368011 GGAGCTCCAGGTACCCCAC 61.368 68.421 28.43 0.00 35.64 4.61
328 1016 3.329889 CCAGGGGTGCAGCTGGTA 61.330 66.667 17.12 0.00 32.67 3.25
329 1017 2.045926 CAGGGGTGCAGCTGGTAC 60.046 66.667 17.12 5.87 0.00 3.34
330 1018 3.706373 AGGGGTGCAGCTGGTACG 61.706 66.667 17.12 0.00 32.16 3.67
331 1019 4.778143 GGGGTGCAGCTGGTACGG 62.778 72.222 17.12 0.00 32.16 4.02
384 1072 4.729856 GCGGCGACTACACCCGTT 62.730 66.667 12.98 0.00 43.70 4.44
385 1073 2.048877 CGGCGACTACACCCGTTT 60.049 61.111 0.00 0.00 37.36 3.60
386 1074 2.090524 CGGCGACTACACCCGTTTC 61.091 63.158 0.00 0.00 37.36 2.78
387 1075 1.291272 GGCGACTACACCCGTTTCT 59.709 57.895 0.00 0.00 0.00 2.52
388 1076 0.527565 GGCGACTACACCCGTTTCTA 59.472 55.000 0.00 0.00 0.00 2.10
389 1077 1.622232 GCGACTACACCCGTTTCTAC 58.378 55.000 0.00 0.00 0.00 2.59
390 1078 1.068333 GCGACTACACCCGTTTCTACA 60.068 52.381 0.00 0.00 0.00 2.74
391 1079 2.860062 CGACTACACCCGTTTCTACAG 58.140 52.381 0.00 0.00 0.00 2.74
392 1080 2.415090 CGACTACACCCGTTTCTACAGG 60.415 54.545 0.00 0.00 0.00 4.00
393 1081 1.274447 ACTACACCCGTTTCTACAGGC 59.726 52.381 0.00 0.00 0.00 4.85
394 1082 1.549170 CTACACCCGTTTCTACAGGCT 59.451 52.381 0.00 0.00 0.00 4.58
395 1083 0.763035 ACACCCGTTTCTACAGGCTT 59.237 50.000 0.00 0.00 0.00 4.35
396 1084 1.270678 ACACCCGTTTCTACAGGCTTC 60.271 52.381 0.00 0.00 0.00 3.86
397 1085 1.002087 CACCCGTTTCTACAGGCTTCT 59.998 52.381 0.00 0.00 0.00 2.85
398 1086 1.275573 ACCCGTTTCTACAGGCTTCTC 59.724 52.381 0.00 0.00 0.00 2.87
399 1087 1.275291 CCCGTTTCTACAGGCTTCTCA 59.725 52.381 0.00 0.00 0.00 3.27
400 1088 2.611518 CCGTTTCTACAGGCTTCTCAG 58.388 52.381 0.00 0.00 0.00 3.35
401 1089 1.996191 CGTTTCTACAGGCTTCTCAGC 59.004 52.381 0.00 0.00 46.52 4.26
413 1101 2.928757 GCTTCTCAGCATATAGATGGCG 59.071 50.000 0.00 0.00 46.49 5.69
414 1102 3.519579 CTTCTCAGCATATAGATGGCGG 58.480 50.000 0.00 0.00 33.49 6.13
415 1103 1.827344 TCTCAGCATATAGATGGCGGG 59.173 52.381 0.00 0.00 33.49 6.13
416 1104 0.250234 TCAGCATATAGATGGCGGGC 59.750 55.000 0.00 0.00 33.49 6.13
417 1105 0.745845 CAGCATATAGATGGCGGGCC 60.746 60.000 1.86 1.86 33.26 5.80
418 1106 1.815421 GCATATAGATGGCGGGCCG 60.815 63.158 24.35 24.35 39.42 6.13
419 1107 1.596934 CATATAGATGGCGGGCCGT 59.403 57.895 28.82 7.70 39.42 5.68
420 1108 0.740868 CATATAGATGGCGGGCCGTG 60.741 60.000 28.82 10.52 39.42 4.94
421 1109 1.899437 ATATAGATGGCGGGCCGTGG 61.899 60.000 28.82 0.00 39.42 4.94
445 1133 4.088421 CGCAGTGGTTAGGCGTAG 57.912 61.111 0.00 0.00 45.27 3.51
446 1134 1.214589 CGCAGTGGTTAGGCGTAGT 59.785 57.895 0.00 0.00 45.27 2.73
447 1135 0.389426 CGCAGTGGTTAGGCGTAGTT 60.389 55.000 0.00 0.00 45.27 2.24
448 1136 1.804601 GCAGTGGTTAGGCGTAGTTT 58.195 50.000 0.00 0.00 0.00 2.66
449 1137 1.463444 GCAGTGGTTAGGCGTAGTTTG 59.537 52.381 0.00 0.00 0.00 2.93
450 1138 2.868839 GCAGTGGTTAGGCGTAGTTTGA 60.869 50.000 0.00 0.00 0.00 2.69
451 1139 2.735134 CAGTGGTTAGGCGTAGTTTGAC 59.265 50.000 0.00 0.00 0.00 3.18
452 1140 1.723003 GTGGTTAGGCGTAGTTTGACG 59.277 52.381 0.00 0.00 45.70 4.35
453 1141 1.340889 TGGTTAGGCGTAGTTTGACGT 59.659 47.619 0.00 0.00 44.74 4.34
454 1142 2.556189 TGGTTAGGCGTAGTTTGACGTA 59.444 45.455 0.00 0.00 44.74 3.57
455 1143 3.174375 GGTTAGGCGTAGTTTGACGTAG 58.826 50.000 0.00 0.00 44.74 3.51
471 1159 4.606457 ACGTAGTAGTAGGCGTAGTTTG 57.394 45.455 0.00 0.00 41.94 2.93
472 1160 3.181506 ACGTAGTAGTAGGCGTAGTTTGC 60.182 47.826 0.00 0.00 41.94 3.68
473 1161 3.181507 CGTAGTAGTAGGCGTAGTTTGCA 60.182 47.826 0.00 0.00 0.00 4.08
474 1162 4.497006 CGTAGTAGTAGGCGTAGTTTGCAT 60.497 45.833 0.00 0.00 0.00 3.96
475 1163 3.782046 AGTAGTAGGCGTAGTTTGCATG 58.218 45.455 0.00 0.00 0.00 4.06
476 1164 2.762535 AGTAGGCGTAGTTTGCATGT 57.237 45.000 0.00 0.00 0.00 3.21
477 1165 3.053831 AGTAGGCGTAGTTTGCATGTT 57.946 42.857 0.00 0.00 0.00 2.71
478 1166 3.408634 AGTAGGCGTAGTTTGCATGTTT 58.591 40.909 0.00 0.00 0.00 2.83
479 1167 3.818773 AGTAGGCGTAGTTTGCATGTTTT 59.181 39.130 0.00 0.00 0.00 2.43
480 1168 4.998672 AGTAGGCGTAGTTTGCATGTTTTA 59.001 37.500 0.00 0.00 0.00 1.52
481 1169 5.646360 AGTAGGCGTAGTTTGCATGTTTTAT 59.354 36.000 0.00 0.00 0.00 1.40
482 1170 5.385509 AGGCGTAGTTTGCATGTTTTATT 57.614 34.783 0.00 0.00 0.00 1.40
483 1171 5.778862 AGGCGTAGTTTGCATGTTTTATTT 58.221 33.333 0.00 0.00 0.00 1.40
484 1172 6.220201 AGGCGTAGTTTGCATGTTTTATTTT 58.780 32.000 0.00 0.00 0.00 1.82
485 1173 7.371936 AGGCGTAGTTTGCATGTTTTATTTTA 58.628 30.769 0.00 0.00 0.00 1.52
486 1174 8.032451 AGGCGTAGTTTGCATGTTTTATTTTAT 58.968 29.630 0.00 0.00 0.00 1.40
487 1175 8.652463 GGCGTAGTTTGCATGTTTTATTTTATT 58.348 29.630 0.00 0.00 0.00 1.40
516 1204 4.497473 TTTCAATGAAATTTCGCCGAGT 57.503 36.364 13.34 0.00 31.22 4.18
517 1205 4.497473 TTCAATGAAATTTCGCCGAGTT 57.503 36.364 13.34 0.00 31.22 3.01
518 1206 4.078363 TCAATGAAATTTCGCCGAGTTC 57.922 40.909 13.34 0.00 31.22 3.01
519 1207 2.806288 ATGAAATTTCGCCGAGTTCG 57.194 45.000 13.34 0.00 39.44 3.95
520 1208 1.504359 TGAAATTTCGCCGAGTTCGT 58.496 45.000 13.34 0.00 37.74 3.85
521 1209 1.193650 TGAAATTTCGCCGAGTTCGTG 59.806 47.619 13.34 0.00 37.74 4.35
522 1210 1.193874 GAAATTTCGCCGAGTTCGTGT 59.806 47.619 1.68 0.00 37.74 4.49
523 1211 0.788391 AATTTCGCCGAGTTCGTGTC 59.212 50.000 0.48 0.00 37.74 3.67
524 1212 0.319211 ATTTCGCCGAGTTCGTGTCA 60.319 50.000 0.48 0.00 37.74 3.58
525 1213 0.937699 TTTCGCCGAGTTCGTGTCAG 60.938 55.000 0.48 0.00 37.74 3.51
526 1214 1.788067 TTCGCCGAGTTCGTGTCAGA 61.788 55.000 0.48 0.00 37.74 3.27
527 1215 1.154016 CGCCGAGTTCGTGTCAGAT 60.154 57.895 0.48 0.00 37.74 2.90
528 1216 1.134530 CGCCGAGTTCGTGTCAGATC 61.135 60.000 0.48 0.00 37.74 2.75
529 1217 1.134530 GCCGAGTTCGTGTCAGATCG 61.135 60.000 0.48 0.00 37.74 3.69
530 1218 0.168348 CCGAGTTCGTGTCAGATCGT 59.832 55.000 0.48 0.00 37.74 3.73
531 1219 1.525596 CGAGTTCGTGTCAGATCGTC 58.474 55.000 0.00 0.00 34.11 4.20
532 1220 1.525596 GAGTTCGTGTCAGATCGTCG 58.474 55.000 0.00 0.00 0.00 5.12
533 1221 1.128136 GAGTTCGTGTCAGATCGTCGA 59.872 52.381 0.00 0.00 0.00 4.20
534 1222 1.128878 AGTTCGTGTCAGATCGTCGAG 59.871 52.381 0.00 0.00 32.39 4.04
535 1223 1.136029 GTTCGTGTCAGATCGTCGAGT 60.136 52.381 0.00 0.00 32.39 4.18
536 1224 1.154197 TCGTGTCAGATCGTCGAGTT 58.846 50.000 0.00 0.00 0.00 3.01
537 1225 1.534163 TCGTGTCAGATCGTCGAGTTT 59.466 47.619 0.00 0.00 0.00 2.66
538 1226 1.644295 CGTGTCAGATCGTCGAGTTTG 59.356 52.381 0.00 0.00 0.00 2.93
539 1227 1.387084 GTGTCAGATCGTCGAGTTTGC 59.613 52.381 0.00 0.00 0.00 3.68
540 1228 1.000717 TGTCAGATCGTCGAGTTTGCA 60.001 47.619 0.00 0.00 0.00 4.08
541 1229 1.387084 GTCAGATCGTCGAGTTTGCAC 59.613 52.381 0.00 0.00 0.00 4.57
542 1230 1.000717 TCAGATCGTCGAGTTTGCACA 60.001 47.619 0.00 0.00 0.00 4.57
543 1231 1.792367 CAGATCGTCGAGTTTGCACAA 59.208 47.619 0.00 0.00 0.00 3.33
544 1232 2.220824 CAGATCGTCGAGTTTGCACAAA 59.779 45.455 0.00 0.00 0.00 2.83
545 1233 3.067106 AGATCGTCGAGTTTGCACAAAT 58.933 40.909 0.00 0.00 32.36 2.32
546 1234 3.498397 AGATCGTCGAGTTTGCACAAATT 59.502 39.130 0.00 0.00 32.36 1.82
547 1235 3.684103 TCGTCGAGTTTGCACAAATTT 57.316 38.095 0.00 0.00 32.36 1.82
548 1236 4.797693 TCGTCGAGTTTGCACAAATTTA 57.202 36.364 0.00 0.00 32.36 1.40
549 1237 5.351233 TCGTCGAGTTTGCACAAATTTAT 57.649 34.783 0.00 0.00 32.36 1.40
550 1238 6.469139 TCGTCGAGTTTGCACAAATTTATA 57.531 33.333 0.00 0.00 32.36 0.98
551 1239 6.301108 TCGTCGAGTTTGCACAAATTTATAC 58.699 36.000 0.00 0.00 32.36 1.47
552 1240 5.222286 CGTCGAGTTTGCACAAATTTATACG 59.778 40.000 0.00 3.77 32.36 3.06
553 1241 6.301108 GTCGAGTTTGCACAAATTTATACGA 58.699 36.000 0.00 0.00 32.36 3.43
554 1242 6.793203 GTCGAGTTTGCACAAATTTATACGAA 59.207 34.615 0.00 0.00 32.36 3.85
555 1243 7.321746 GTCGAGTTTGCACAAATTTATACGAAA 59.678 33.333 0.00 0.00 32.36 3.46
556 1244 8.018520 TCGAGTTTGCACAAATTTATACGAAAT 58.981 29.630 0.00 0.00 32.36 2.17
557 1245 9.268255 CGAGTTTGCACAAATTTATACGAAATA 57.732 29.630 0.00 0.00 32.36 1.40
571 1259 2.863673 CGAAATATCGTCGAGTTTGCG 58.136 47.619 11.68 8.89 44.06 4.85
572 1260 2.615262 GAAATATCGTCGAGTTTGCGC 58.385 47.619 0.00 0.00 0.00 6.09
573 1261 0.570734 AATATCGTCGAGTTTGCGCG 59.429 50.000 0.00 0.00 39.25 6.86
574 1262 0.248336 ATATCGTCGAGTTTGCGCGA 60.248 50.000 12.10 0.00 44.14 5.87
580 1268 0.927537 TCGAGTTTGCGCGATATTGG 59.072 50.000 12.10 0.00 41.68 3.16
581 1269 0.654472 CGAGTTTGCGCGATATTGGC 60.654 55.000 12.10 0.00 40.32 4.52
582 1270 0.376852 GAGTTTGCGCGATATTGGCA 59.623 50.000 12.10 0.00 34.35 4.92
583 1271 0.808125 AGTTTGCGCGATATTGGCAA 59.192 45.000 12.10 0.68 44.20 4.52
584 1272 0.913876 GTTTGCGCGATATTGGCAAC 59.086 50.000 12.10 9.12 45.40 4.17
585 1273 0.522286 TTTGCGCGATATTGGCAACG 60.522 50.000 12.10 2.78 45.40 4.10
586 1274 1.362406 TTGCGCGATATTGGCAACGA 61.362 50.000 12.10 0.00 41.34 3.85
587 1275 1.157257 TGCGCGATATTGGCAACGAT 61.157 50.000 12.10 4.67 45.08 3.73
588 1276 0.451135 GCGCGATATTGGCAACGATC 60.451 55.000 12.10 12.09 42.24 3.69
589 1277 1.139989 CGCGATATTGGCAACGATCT 58.860 50.000 17.28 0.00 42.24 2.75
590 1278 1.136529 CGCGATATTGGCAACGATCTG 60.137 52.381 17.28 13.06 42.24 2.90
591 1279 2.135139 GCGATATTGGCAACGATCTGA 58.865 47.619 17.28 0.00 42.24 3.27
592 1280 2.156504 GCGATATTGGCAACGATCTGAG 59.843 50.000 17.28 7.34 42.24 3.35
593 1281 2.733552 CGATATTGGCAACGATCTGAGG 59.266 50.000 17.28 3.55 42.24 3.86
594 1282 2.620251 TATTGGCAACGATCTGAGGG 57.380 50.000 0.00 0.00 42.24 4.30
595 1283 0.749454 ATTGGCAACGATCTGAGGGC 60.749 55.000 0.00 0.00 34.84 5.19
596 1284 2.892425 GGCAACGATCTGAGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
597 1285 2.184322 GCAACGATCTGAGGGCGA 59.816 61.111 0.00 0.00 0.00 5.54
598 1286 2.167861 GCAACGATCTGAGGGCGAC 61.168 63.158 0.00 0.00 0.00 5.19
599 1287 1.874019 CAACGATCTGAGGGCGACG 60.874 63.158 0.00 0.00 0.00 5.12
600 1288 2.044555 AACGATCTGAGGGCGACGA 61.045 57.895 0.00 0.00 0.00 4.20
601 1289 2.024871 CGATCTGAGGGCGACGAC 59.975 66.667 0.00 0.00 0.00 4.34
602 1290 2.473760 CGATCTGAGGGCGACGACT 61.474 63.158 0.00 0.00 0.00 4.18
603 1291 1.158484 CGATCTGAGGGCGACGACTA 61.158 60.000 0.00 0.00 0.00 2.59
604 1292 1.022735 GATCTGAGGGCGACGACTAA 58.977 55.000 0.00 0.00 0.00 2.24
605 1293 1.404391 GATCTGAGGGCGACGACTAAA 59.596 52.381 0.00 0.00 0.00 1.85
606 1294 1.250328 TCTGAGGGCGACGACTAAAA 58.750 50.000 0.00 0.00 0.00 1.52
607 1295 1.614903 TCTGAGGGCGACGACTAAAAA 59.385 47.619 0.00 0.00 0.00 1.94
608 1296 1.725164 CTGAGGGCGACGACTAAAAAC 59.275 52.381 0.00 0.00 0.00 2.43
609 1297 0.712222 GAGGGCGACGACTAAAAACG 59.288 55.000 0.00 0.00 0.00 3.60
610 1298 0.668401 AGGGCGACGACTAAAAACGG 60.668 55.000 0.00 0.00 0.00 4.44
611 1299 0.667184 GGGCGACGACTAAAAACGGA 60.667 55.000 0.00 0.00 0.00 4.69
612 1300 0.712222 GGCGACGACTAAAAACGGAG 59.288 55.000 0.00 0.00 0.00 4.63
614 1302 1.384742 GCGACGACTAAAAACGGAGTC 59.615 52.381 0.00 0.00 45.00 3.36
615 1303 2.653890 CGACGACTAAAAACGGAGTCA 58.346 47.619 0.00 0.00 45.00 3.41
616 1304 3.240069 CGACGACTAAAAACGGAGTCAT 58.760 45.455 0.00 0.00 45.00 3.06
617 1305 3.671928 CGACGACTAAAAACGGAGTCATT 59.328 43.478 0.00 0.00 45.00 2.57
618 1306 4.201466 CGACGACTAAAAACGGAGTCATTC 60.201 45.833 0.00 0.00 45.00 2.67
619 1307 3.992427 ACGACTAAAAACGGAGTCATTCC 59.008 43.478 0.00 0.00 45.00 3.01
620 1308 3.370061 CGACTAAAAACGGAGTCATTCCC 59.630 47.826 3.22 0.00 45.00 3.97
621 1309 4.320870 GACTAAAAACGGAGTCATTCCCA 58.679 43.478 0.00 0.00 45.00 4.37
622 1310 4.070009 ACTAAAAACGGAGTCATTCCCAC 58.930 43.478 0.00 0.00 45.00 4.61
623 1311 1.519408 AAAACGGAGTCATTCCCACG 58.481 50.000 0.00 0.00 45.00 4.94
624 1312 0.953960 AAACGGAGTCATTCCCACGC 60.954 55.000 0.00 0.00 45.00 5.34
625 1313 2.885644 CGGAGTCATTCCCACGCG 60.886 66.667 3.53 3.53 43.63 6.01
626 1314 2.264794 GGAGTCATTCCCACGCGT 59.735 61.111 5.58 5.58 40.37 6.01
627 1315 1.810030 GGAGTCATTCCCACGCGTC 60.810 63.158 9.86 0.00 40.37 5.19
628 1316 1.080093 GAGTCATTCCCACGCGTCA 60.080 57.895 9.86 0.00 0.00 4.35
629 1317 0.669318 GAGTCATTCCCACGCGTCAA 60.669 55.000 9.86 2.45 0.00 3.18
630 1318 0.670546 AGTCATTCCCACGCGTCAAG 60.671 55.000 9.86 0.00 0.00 3.02
631 1319 2.032634 TCATTCCCACGCGTCAAGC 61.033 57.895 9.86 0.00 43.95 4.01
632 1320 2.034879 CATTCCCACGCGTCAAGCT 61.035 57.895 9.86 0.00 45.59 3.74
633 1321 0.739462 CATTCCCACGCGTCAAGCTA 60.739 55.000 9.86 0.00 45.59 3.32
634 1322 0.460284 ATTCCCACGCGTCAAGCTAG 60.460 55.000 9.86 0.00 45.59 3.42
635 1323 3.188786 CCCACGCGTCAAGCTAGC 61.189 66.667 9.86 6.62 45.59 3.42
641 1329 4.796231 CGTCAAGCTAGCGCCGGT 62.796 66.667 9.55 0.00 36.60 5.28
642 1330 2.434359 GTCAAGCTAGCGCCGGTT 60.434 61.111 9.55 4.61 36.60 4.44
643 1331 2.125673 TCAAGCTAGCGCCGGTTC 60.126 61.111 9.55 0.00 36.60 3.62
644 1332 3.554692 CAAGCTAGCGCCGGTTCG 61.555 66.667 9.55 0.00 36.60 3.95
645 1333 4.065281 AAGCTAGCGCCGGTTCGT 62.065 61.111 9.55 0.00 36.60 3.85
646 1334 3.984200 AAGCTAGCGCCGGTTCGTC 62.984 63.158 9.55 0.00 36.60 4.20
647 1335 4.493747 GCTAGCGCCGGTTCGTCT 62.494 66.667 2.29 3.64 0.00 4.18
648 1336 2.278013 CTAGCGCCGGTTCGTCTC 60.278 66.667 2.29 0.00 0.00 3.36
649 1337 2.749044 TAGCGCCGGTTCGTCTCT 60.749 61.111 2.29 0.00 0.00 3.10
650 1338 1.434622 CTAGCGCCGGTTCGTCTCTA 61.435 60.000 2.29 0.00 0.00 2.43
651 1339 1.434622 TAGCGCCGGTTCGTCTCTAG 61.435 60.000 2.29 0.00 0.00 2.43
652 1340 2.758089 GCGCCGGTTCGTCTCTAGA 61.758 63.158 1.90 0.00 0.00 2.43
653 1341 1.062206 CGCCGGTTCGTCTCTAGAC 59.938 63.158 1.90 0.00 41.47 2.59
654 1342 1.642037 CGCCGGTTCGTCTCTAGACA 61.642 60.000 1.90 0.00 44.99 3.41
655 1343 0.099082 GCCGGTTCGTCTCTAGACAG 59.901 60.000 1.90 3.82 44.99 3.51
656 1344 0.099082 CCGGTTCGTCTCTAGACAGC 59.901 60.000 10.55 1.08 44.99 4.40
657 1345 1.088306 CGGTTCGTCTCTAGACAGCT 58.912 55.000 10.55 0.00 44.99 4.24
658 1346 1.062880 CGGTTCGTCTCTAGACAGCTC 59.937 57.143 10.55 0.00 44.99 4.09
659 1347 2.361789 GGTTCGTCTCTAGACAGCTCT 58.638 52.381 10.55 0.00 44.99 4.09
660 1348 2.750712 GGTTCGTCTCTAGACAGCTCTT 59.249 50.000 10.55 0.00 44.99 2.85
661 1349 3.191791 GGTTCGTCTCTAGACAGCTCTTT 59.808 47.826 10.55 0.00 44.99 2.52
662 1350 4.321378 GGTTCGTCTCTAGACAGCTCTTTT 60.321 45.833 10.55 0.00 44.99 2.27
663 1351 5.106237 GGTTCGTCTCTAGACAGCTCTTTTA 60.106 44.000 10.55 0.00 44.99 1.52
664 1352 5.548706 TCGTCTCTAGACAGCTCTTTTAC 57.451 43.478 10.55 0.00 44.99 2.01
665 1353 5.001874 TCGTCTCTAGACAGCTCTTTTACA 58.998 41.667 10.55 0.00 44.99 2.41
666 1354 5.122554 TCGTCTCTAGACAGCTCTTTTACAG 59.877 44.000 10.55 0.00 44.99 2.74
667 1355 5.099575 GTCTCTAGACAGCTCTTTTACAGC 58.900 45.833 5.24 0.00 44.18 4.40
668 1356 4.098055 TCTAGACAGCTCTTTTACAGCG 57.902 45.455 0.00 0.00 42.14 5.18
669 1357 1.433534 AGACAGCTCTTTTACAGCGC 58.566 50.000 0.00 0.00 42.14 5.92
670 1358 0.444260 GACAGCTCTTTTACAGCGCC 59.556 55.000 2.29 0.00 42.14 6.53
671 1359 0.955919 ACAGCTCTTTTACAGCGCCC 60.956 55.000 2.29 0.00 42.14 6.13
672 1360 0.674895 CAGCTCTTTTACAGCGCCCT 60.675 55.000 2.29 0.00 42.14 5.19
673 1361 0.674895 AGCTCTTTTACAGCGCCCTG 60.675 55.000 2.29 0.00 42.14 4.45
674 1362 1.648467 GCTCTTTTACAGCGCCCTGG 61.648 60.000 2.29 0.00 43.53 4.45
675 1363 1.002624 TCTTTTACAGCGCCCTGGG 60.003 57.895 8.86 8.86 43.53 4.45
676 1364 2.034999 TTTTACAGCGCCCTGGGG 59.965 61.111 16.03 4.75 43.53 4.96
677 1365 2.764637 CTTTTACAGCGCCCTGGGGT 62.765 60.000 16.03 6.22 43.53 4.95
678 1366 2.757980 TTTTACAGCGCCCTGGGGTC 62.758 60.000 16.03 0.00 43.53 4.46
684 1372 4.891727 CGCCCTGGGGTCGAATCG 62.892 72.222 16.03 3.37 37.11 3.34
685 1373 4.547367 GCCCTGGGGTCGAATCGG 62.547 72.222 16.03 0.00 37.65 4.18
686 1374 4.547367 CCCTGGGGTCGAATCGGC 62.547 72.222 4.27 0.00 0.00 5.54
687 1375 3.470888 CCTGGGGTCGAATCGGCT 61.471 66.667 7.33 0.00 0.00 5.52
688 1376 2.202932 CTGGGGTCGAATCGGCTG 60.203 66.667 7.33 0.00 0.00 4.85
689 1377 3.740128 CTGGGGTCGAATCGGCTGG 62.740 68.421 7.33 0.00 0.00 4.85
690 1378 3.467226 GGGGTCGAATCGGCTGGA 61.467 66.667 7.33 0.00 0.00 3.86
691 1379 2.808206 GGGGTCGAATCGGCTGGAT 61.808 63.158 7.33 0.00 36.78 3.41
692 1380 1.469335 GGGGTCGAATCGGCTGGATA 61.469 60.000 7.33 0.00 34.08 2.59
693 1381 0.608640 GGGTCGAATCGGCTGGATAT 59.391 55.000 7.33 0.00 34.08 1.63
711 1399 1.888215 ATGCTCTTATCCGTGGCATG 58.112 50.000 0.00 0.00 41.26 4.06
770 1458 3.394874 CGACGTGGACACAGTGCG 61.395 66.667 0.00 0.00 0.00 5.34
774 1495 2.927618 CGTGGACACAGTGCGAACG 61.928 63.158 0.00 4.32 0.00 3.95
825 1551 3.372795 TGTTCACCTCCACGAACAC 57.627 52.632 1.03 0.00 44.88 3.32
828 1554 2.218603 GTTCACCTCCACGAACACATT 58.781 47.619 0.00 0.00 40.97 2.71
833 1594 2.158667 ACCTCCACGAACACATTCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
857 1618 1.442526 GATTGCCTGTCAGCCCATCG 61.443 60.000 0.00 0.00 0.00 3.84
1327 2120 3.755628 CCTTCGCGTTCCTCCCGA 61.756 66.667 5.77 0.00 0.00 5.14
1372 2177 2.439883 GGCTCGTCCGGGACTACT 60.440 66.667 23.86 0.00 0.00 2.57
1623 2428 1.375523 GCCCTCGTTCGTGGTGATT 60.376 57.895 11.38 0.00 0.00 2.57
2313 3134 1.406539 AGCTTGCCAACTGTTTGAGTG 59.593 47.619 0.00 0.00 34.02 3.51
2315 3136 1.750778 CTTGCCAACTGTTTGAGTGGT 59.249 47.619 0.00 0.00 34.02 4.16
2337 3158 2.780714 TCGCCAAATACTTTCGGGAAA 58.219 42.857 0.00 0.00 0.00 3.13
2341 3162 4.142469 CGCCAAATACTTTCGGGAAATTCT 60.142 41.667 0.00 0.00 0.00 2.40
2342 3163 5.340803 GCCAAATACTTTCGGGAAATTCTC 58.659 41.667 0.00 0.00 0.00 2.87
2375 3215 3.765511 GGTGTATGTAGTACTGGTGTGGA 59.234 47.826 5.39 0.00 34.27 4.02
2419 3352 7.494625 CGACAGTTTGTATTGGTCTTGGTATAT 59.505 37.037 0.00 0.00 0.00 0.86
2420 3353 9.826574 GACAGTTTGTATTGGTCTTGGTATATA 57.173 33.333 0.00 0.00 0.00 0.86
2449 3388 3.930336 TCAGAAATACAGTGCAGGAGTG 58.070 45.455 0.00 0.00 0.00 3.51
2501 3440 8.684520 GTGTACAGTATATAACAGGTTCAGAGT 58.315 37.037 0.00 0.00 0.00 3.24
2502 3441 9.251440 TGTACAGTATATAACAGGTTCAGAGTT 57.749 33.333 0.00 0.00 0.00 3.01
2526 4184 3.057666 TCATTTTTCAGCACAGCGCATAA 60.058 39.130 11.47 0.00 46.13 1.90
2544 4202 5.630680 CGCATAAATCCTCATAAATGCAACC 59.369 40.000 0.00 0.00 39.68 3.77
2553 4211 2.570415 TAAATGCAACCACCGGAGAA 57.430 45.000 9.46 0.00 0.00 2.87
2559 4217 1.073199 AACCACCGGAGAAAGCAGG 59.927 57.895 9.46 0.00 0.00 4.85
2574 4232 5.185828 AGAAAGCAGGTTGAATTATTGGTCC 59.814 40.000 0.00 0.00 0.00 4.46
2687 4349 8.514136 TTTCATTTTTATTTTCCAGTACAGCG 57.486 30.769 0.00 0.00 0.00 5.18
2708 4370 4.201783 GCGCATAAATCCCCATACGATAAC 60.202 45.833 0.30 0.00 0.00 1.89
2711 4374 6.608610 GCATAAATCCCCATACGATAACAAC 58.391 40.000 0.00 0.00 0.00 3.32
2724 4387 4.384846 ACGATAACAACGAACAAGCTACTG 59.615 41.667 0.00 0.00 34.70 2.74
2725 4388 4.619760 CGATAACAACGAACAAGCTACTGA 59.380 41.667 0.00 0.00 0.00 3.41
2726 4389 5.442909 CGATAACAACGAACAAGCTACTGAC 60.443 44.000 0.00 0.00 0.00 3.51
2744 4407 5.837437 ACTGACACAGAGACACTTTCTTAG 58.163 41.667 5.76 0.00 33.22 2.18
2751 4414 8.475639 ACACAGAGACACTTTCTTAGTTTCTTA 58.524 33.333 0.00 0.00 42.53 2.10
2776 4439 1.149288 TGTTCTACCCTGTCCCAGACT 59.851 52.381 0.00 0.00 32.44 3.24
2813 4478 9.515020 GTCTATTTCTTCTTCATCTCTACACAG 57.485 37.037 0.00 0.00 0.00 3.66
2840 4505 8.700973 ACAAACACCAGTAAACTTTATTGGATT 58.299 29.630 23.26 15.76 33.19 3.01
2841 4506 8.977505 CAAACACCAGTAAACTTTATTGGATTG 58.022 33.333 23.26 19.36 33.19 2.67
2842 4507 7.833285 ACACCAGTAAACTTTATTGGATTGT 57.167 32.000 23.26 16.72 33.19 2.71
2843 4508 8.927675 ACACCAGTAAACTTTATTGGATTGTA 57.072 30.769 23.26 0.00 33.19 2.41
2844 4509 8.789762 ACACCAGTAAACTTTATTGGATTGTAC 58.210 33.333 23.26 0.00 33.19 2.90
2845 4510 9.010029 CACCAGTAAACTTTATTGGATTGTACT 57.990 33.333 23.26 3.24 33.19 2.73
2854 4519 9.847224 ACTTTATTGGATTGTACTAGGTATTGG 57.153 33.333 0.00 0.00 0.00 3.16
2855 4520 8.685838 TTTATTGGATTGTACTAGGTATTGGC 57.314 34.615 0.00 0.00 0.00 4.52
2856 4521 5.968676 TTGGATTGTACTAGGTATTGGCT 57.031 39.130 0.00 0.00 0.00 4.75
2857 4522 5.968676 TGGATTGTACTAGGTATTGGCTT 57.031 39.130 0.00 0.00 0.00 4.35
2858 4523 5.680619 TGGATTGTACTAGGTATTGGCTTG 58.319 41.667 0.00 0.00 0.00 4.01
2859 4524 5.427157 TGGATTGTACTAGGTATTGGCTTGA 59.573 40.000 0.00 0.00 0.00 3.02
2860 4525 6.069905 TGGATTGTACTAGGTATTGGCTTGAA 60.070 38.462 0.00 0.00 0.00 2.69
2861 4526 6.998673 GGATTGTACTAGGTATTGGCTTGAAT 59.001 38.462 0.00 0.00 0.00 2.57
2862 4527 7.173390 GGATTGTACTAGGTATTGGCTTGAATC 59.827 40.741 0.00 0.00 0.00 2.52
2863 4528 5.925509 TGTACTAGGTATTGGCTTGAATCC 58.074 41.667 0.00 0.00 0.00 3.01
2864 4529 4.073293 ACTAGGTATTGGCTTGAATCCG 57.927 45.455 0.00 0.00 0.00 4.18
2865 4530 1.680338 AGGTATTGGCTTGAATCCGC 58.320 50.000 0.00 0.00 0.00 5.54
2898 4563 7.348080 ACAGAGAACTATTCATGGATACGAA 57.652 36.000 0.00 0.00 42.51 3.85
2899 4564 7.203910 ACAGAGAACTATTCATGGATACGAAC 58.796 38.462 0.00 0.00 42.51 3.95
2900 4565 6.360947 CAGAGAACTATTCATGGATACGAACG 59.639 42.308 0.00 0.00 42.51 3.95
2901 4566 6.262496 AGAGAACTATTCATGGATACGAACGA 59.738 38.462 0.14 0.00 42.51 3.85
2902 4567 6.982852 AGAACTATTCATGGATACGAACGAT 58.017 36.000 0.14 0.00 42.51 3.73
2903 4568 8.107399 AGAACTATTCATGGATACGAACGATA 57.893 34.615 0.14 0.00 42.51 2.92
2909 4574 4.157840 TCATGGATACGAACGATATCAGGG 59.842 45.833 3.12 0.00 42.51 4.45
2917 4582 0.179056 ACGATATCAGGGGTTTGCGG 60.179 55.000 3.12 0.00 0.00 5.69
3028 4732 2.731571 GCAGATGGTCCACGCCCTA 61.732 63.158 0.00 0.00 0.00 3.53
3064 4768 2.286294 GCATCATGAGGACTTTGTAGCG 59.714 50.000 12.39 0.00 0.00 4.26
3078 4782 1.335597 TGTAGCGTTGTTCTGGAGTCG 60.336 52.381 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.659874 GCCAAACGCGTGTCGGTG 62.660 66.667 14.98 6.33 43.86 4.94
72 73 1.270147 CGGGGAGGTCGCCTTTTATAG 60.270 57.143 11.02 0.00 45.75 1.31
213 901 0.035056 AGTCCTCCTTCGCCCATTTG 60.035 55.000 0.00 0.00 0.00 2.32
266 954 1.381928 TACCTGGAGCTCCGCGTAAG 61.382 60.000 27.43 18.01 39.43 2.34
267 955 1.378911 TACCTGGAGCTCCGCGTAA 60.379 57.895 27.43 8.96 39.43 3.18
268 956 2.117156 GTACCTGGAGCTCCGCGTA 61.117 63.158 27.43 24.24 39.43 4.42
269 957 3.450115 GTACCTGGAGCTCCGCGT 61.450 66.667 27.43 25.24 39.43 6.01
270 958 4.208686 GGTACCTGGAGCTCCGCG 62.209 72.222 27.43 21.05 39.43 6.46
312 1000 2.045926 GTACCAGCTGCACCCCTG 60.046 66.667 8.66 0.00 0.00 4.45
313 1001 3.706373 CGTACCAGCTGCACCCCT 61.706 66.667 8.66 0.00 0.00 4.79
314 1002 4.778143 CCGTACCAGCTGCACCCC 62.778 72.222 8.66 0.00 0.00 4.95
367 1055 4.729856 AACGGGTGTAGTCGCCGC 62.730 66.667 0.00 0.00 44.47 6.53
368 1056 2.048877 AAACGGGTGTAGTCGCCG 60.049 61.111 0.00 0.00 44.47 6.46
369 1057 0.527565 TAGAAACGGGTGTAGTCGCC 59.472 55.000 0.00 0.00 42.95 5.54
370 1058 1.068333 TGTAGAAACGGGTGTAGTCGC 60.068 52.381 0.00 0.00 0.00 5.19
371 1059 2.415090 CCTGTAGAAACGGGTGTAGTCG 60.415 54.545 0.00 0.00 45.83 4.18
372 1060 3.227810 CCTGTAGAAACGGGTGTAGTC 57.772 52.381 0.00 0.00 45.83 2.59
380 1068 2.611518 CTGAGAAGCCTGTAGAAACGG 58.388 52.381 0.00 0.00 0.00 4.44
381 1069 1.996191 GCTGAGAAGCCTGTAGAAACG 59.004 52.381 0.00 0.00 0.00 3.60
382 1070 3.045601 TGCTGAGAAGCCTGTAGAAAC 57.954 47.619 0.00 0.00 0.00 2.78
383 1071 3.988976 ATGCTGAGAAGCCTGTAGAAA 57.011 42.857 0.00 0.00 0.00 2.52
384 1072 6.071320 TCTATATGCTGAGAAGCCTGTAGAA 58.929 40.000 6.90 0.00 33.17 2.10
385 1073 5.635120 TCTATATGCTGAGAAGCCTGTAGA 58.365 41.667 5.72 5.72 33.48 2.59
386 1074 5.973899 TCTATATGCTGAGAAGCCTGTAG 57.026 43.478 0.00 0.00 0.00 2.74
387 1075 5.186603 CCATCTATATGCTGAGAAGCCTGTA 59.813 44.000 0.00 0.00 0.00 2.74
388 1076 4.020396 CCATCTATATGCTGAGAAGCCTGT 60.020 45.833 0.00 0.00 0.00 4.00
389 1077 4.505808 CCATCTATATGCTGAGAAGCCTG 58.494 47.826 0.00 0.00 0.00 4.85
390 1078 3.055240 GCCATCTATATGCTGAGAAGCCT 60.055 47.826 0.00 0.00 0.00 4.58
391 1079 3.269178 GCCATCTATATGCTGAGAAGCC 58.731 50.000 0.00 0.00 0.00 4.35
392 1080 2.928757 CGCCATCTATATGCTGAGAAGC 59.071 50.000 0.00 0.00 0.00 3.86
393 1081 3.519579 CCGCCATCTATATGCTGAGAAG 58.480 50.000 0.00 0.00 0.00 2.85
394 1082 2.234661 CCCGCCATCTATATGCTGAGAA 59.765 50.000 0.00 0.00 0.00 2.87
395 1083 1.827344 CCCGCCATCTATATGCTGAGA 59.173 52.381 0.00 0.00 0.00 3.27
396 1084 1.741732 GCCCGCCATCTATATGCTGAG 60.742 57.143 0.00 0.00 0.00 3.35
397 1085 0.250234 GCCCGCCATCTATATGCTGA 59.750 55.000 0.00 0.00 0.00 4.26
398 1086 0.745845 GGCCCGCCATCTATATGCTG 60.746 60.000 0.00 0.00 35.81 4.41
399 1087 1.604378 GGCCCGCCATCTATATGCT 59.396 57.895 0.00 0.00 35.81 3.79
400 1088 1.815421 CGGCCCGCCATCTATATGC 60.815 63.158 6.52 0.00 35.37 3.14
401 1089 0.740868 CACGGCCCGCCATCTATATG 60.741 60.000 1.23 0.00 35.37 1.78
402 1090 1.596934 CACGGCCCGCCATCTATAT 59.403 57.895 1.23 0.00 35.37 0.86
403 1091 2.579657 CCACGGCCCGCCATCTATA 61.580 63.158 1.23 0.00 35.37 1.31
404 1092 3.941188 CCACGGCCCGCCATCTAT 61.941 66.667 1.23 0.00 35.37 1.98
429 1117 1.463444 CAAACTACGCCTAACCACTGC 59.537 52.381 0.00 0.00 0.00 4.40
430 1118 2.735134 GTCAAACTACGCCTAACCACTG 59.265 50.000 0.00 0.00 0.00 3.66
431 1119 2.608752 CGTCAAACTACGCCTAACCACT 60.609 50.000 0.00 0.00 35.87 4.00
432 1120 1.723003 CGTCAAACTACGCCTAACCAC 59.277 52.381 0.00 0.00 35.87 4.16
433 1121 1.340889 ACGTCAAACTACGCCTAACCA 59.659 47.619 0.00 0.00 46.71 3.67
434 1122 2.070262 ACGTCAAACTACGCCTAACC 57.930 50.000 0.00 0.00 46.71 2.85
435 1123 3.826466 ACTACGTCAAACTACGCCTAAC 58.174 45.455 0.00 0.00 46.71 2.34
436 1124 4.695455 ACTACTACGTCAAACTACGCCTAA 59.305 41.667 0.00 0.00 46.71 2.69
437 1125 4.253685 ACTACTACGTCAAACTACGCCTA 58.746 43.478 0.00 0.00 46.71 3.93
438 1126 3.077359 ACTACTACGTCAAACTACGCCT 58.923 45.455 0.00 0.00 46.71 5.52
439 1127 3.477899 ACTACTACGTCAAACTACGCC 57.522 47.619 0.00 0.00 46.71 5.68
440 1128 4.582459 CCTACTACTACGTCAAACTACGC 58.418 47.826 0.00 0.00 46.71 4.42
442 1130 4.093556 ACGCCTACTACTACGTCAAACTAC 59.906 45.833 0.00 0.00 32.37 2.73
443 1131 4.253685 ACGCCTACTACTACGTCAAACTA 58.746 43.478 0.00 0.00 32.37 2.24
444 1132 3.077359 ACGCCTACTACTACGTCAAACT 58.923 45.455 0.00 0.00 32.37 2.66
445 1133 3.477899 ACGCCTACTACTACGTCAAAC 57.522 47.619 0.00 0.00 32.37 2.93
446 1134 4.253685 ACTACGCCTACTACTACGTCAAA 58.746 43.478 0.00 0.00 39.78 2.69
447 1135 3.861840 ACTACGCCTACTACTACGTCAA 58.138 45.455 0.00 0.00 39.78 3.18
448 1136 3.526931 ACTACGCCTACTACTACGTCA 57.473 47.619 0.00 0.00 39.78 4.35
449 1137 4.582459 CAAACTACGCCTACTACTACGTC 58.418 47.826 0.00 0.00 39.78 4.34
450 1138 3.181506 GCAAACTACGCCTACTACTACGT 60.182 47.826 0.00 0.00 42.22 3.57
451 1139 3.181507 TGCAAACTACGCCTACTACTACG 60.182 47.826 0.00 0.00 0.00 3.51
452 1140 4.361451 TGCAAACTACGCCTACTACTAC 57.639 45.455 0.00 0.00 0.00 2.73
453 1141 4.400251 ACATGCAAACTACGCCTACTACTA 59.600 41.667 0.00 0.00 0.00 1.82
454 1142 3.194968 ACATGCAAACTACGCCTACTACT 59.805 43.478 0.00 0.00 0.00 2.57
455 1143 3.518590 ACATGCAAACTACGCCTACTAC 58.481 45.455 0.00 0.00 0.00 2.73
456 1144 3.880047 ACATGCAAACTACGCCTACTA 57.120 42.857 0.00 0.00 0.00 1.82
457 1145 2.762535 ACATGCAAACTACGCCTACT 57.237 45.000 0.00 0.00 0.00 2.57
458 1146 3.824414 AAACATGCAAACTACGCCTAC 57.176 42.857 0.00 0.00 0.00 3.18
459 1147 6.503589 AATAAAACATGCAAACTACGCCTA 57.496 33.333 0.00 0.00 0.00 3.93
460 1148 5.385509 AATAAAACATGCAAACTACGCCT 57.614 34.783 0.00 0.00 0.00 5.52
461 1149 6.460664 AAAATAAAACATGCAAACTACGCC 57.539 33.333 0.00 0.00 0.00 5.68
493 1181 8.975255 CGAACTCGGCGAAATTTCATTGAAATT 61.975 37.037 24.88 24.88 42.78 1.82
494 1182 5.059404 ACTCGGCGAAATTTCATTGAAAT 57.941 34.783 17.03 17.03 43.07 2.17
495 1183 4.497473 ACTCGGCGAAATTTCATTGAAA 57.503 36.364 17.99 13.88 35.94 2.69
496 1184 4.472286 GAACTCGGCGAAATTTCATTGAA 58.528 39.130 17.99 0.00 0.00 2.69
497 1185 3.424302 CGAACTCGGCGAAATTTCATTGA 60.424 43.478 17.99 10.24 35.37 2.57
498 1186 2.840176 CGAACTCGGCGAAATTTCATTG 59.160 45.455 17.99 6.60 35.37 2.82
499 1187 2.482721 ACGAACTCGGCGAAATTTCATT 59.517 40.909 17.99 1.49 44.95 2.57
500 1188 2.073816 ACGAACTCGGCGAAATTTCAT 58.926 42.857 17.99 0.00 44.95 2.57
501 1189 1.193650 CACGAACTCGGCGAAATTTCA 59.806 47.619 17.99 0.00 44.95 2.69
502 1190 1.193874 ACACGAACTCGGCGAAATTTC 59.806 47.619 12.13 12.65 44.95 2.17
503 1191 1.193874 GACACGAACTCGGCGAAATTT 59.806 47.619 12.13 4.25 44.95 1.82
504 1192 0.788391 GACACGAACTCGGCGAAATT 59.212 50.000 12.13 8.54 44.95 1.82
505 1193 0.319211 TGACACGAACTCGGCGAAAT 60.319 50.000 12.13 1.71 44.95 2.17
506 1194 0.937699 CTGACACGAACTCGGCGAAA 60.938 55.000 12.13 0.00 44.95 3.46
507 1195 1.371267 CTGACACGAACTCGGCGAA 60.371 57.895 12.13 0.00 44.95 4.70
508 1196 1.583495 ATCTGACACGAACTCGGCGA 61.583 55.000 10.14 10.14 44.95 5.54
509 1197 1.134530 GATCTGACACGAACTCGGCG 61.135 60.000 0.00 0.00 44.95 6.46
510 1198 1.134530 CGATCTGACACGAACTCGGC 61.135 60.000 3.88 0.00 44.95 5.54
511 1199 0.168348 ACGATCTGACACGAACTCGG 59.832 55.000 11.81 0.00 44.95 4.63
512 1200 1.525596 GACGATCTGACACGAACTCG 58.474 55.000 11.81 0.00 46.33 4.18
513 1201 1.128136 TCGACGATCTGACACGAACTC 59.872 52.381 11.81 0.92 0.00 3.01
514 1202 1.128878 CTCGACGATCTGACACGAACT 59.871 52.381 0.00 0.00 32.85 3.01
515 1203 1.136029 ACTCGACGATCTGACACGAAC 60.136 52.381 0.00 5.86 32.85 3.95
516 1204 1.154197 ACTCGACGATCTGACACGAA 58.846 50.000 0.00 0.00 32.85 3.85
517 1205 1.154197 AACTCGACGATCTGACACGA 58.846 50.000 0.00 0.00 0.00 4.35
518 1206 1.644295 CAAACTCGACGATCTGACACG 59.356 52.381 0.00 4.90 0.00 4.49
519 1207 1.387084 GCAAACTCGACGATCTGACAC 59.613 52.381 0.00 0.00 0.00 3.67
520 1208 1.000717 TGCAAACTCGACGATCTGACA 60.001 47.619 0.00 0.00 0.00 3.58
521 1209 1.387084 GTGCAAACTCGACGATCTGAC 59.613 52.381 0.00 0.00 0.00 3.51
522 1210 1.000717 TGTGCAAACTCGACGATCTGA 60.001 47.619 0.00 0.00 0.00 3.27
523 1211 1.418373 TGTGCAAACTCGACGATCTG 58.582 50.000 0.00 0.00 0.00 2.90
524 1212 2.148916 TTGTGCAAACTCGACGATCT 57.851 45.000 0.00 0.00 0.00 2.75
525 1213 2.941891 TTTGTGCAAACTCGACGATC 57.058 45.000 0.00 0.00 0.00 3.69
526 1214 3.896648 AATTTGTGCAAACTCGACGAT 57.103 38.095 0.00 0.00 32.51 3.73
527 1215 3.684103 AAATTTGTGCAAACTCGACGA 57.316 38.095 0.00 0.00 32.51 4.20
528 1216 5.222286 CGTATAAATTTGTGCAAACTCGACG 59.778 40.000 0.00 3.77 32.51 5.12
529 1217 6.301108 TCGTATAAATTTGTGCAAACTCGAC 58.699 36.000 0.00 0.00 32.51 4.20
530 1218 6.469139 TCGTATAAATTTGTGCAAACTCGA 57.531 33.333 0.00 0.00 32.51 4.04
531 1219 7.541743 TTTCGTATAAATTTGTGCAAACTCG 57.458 32.000 0.00 0.78 32.51 4.18
552 1240 2.615262 GCGCAAACTCGACGATATTTC 58.385 47.619 0.30 0.00 0.00 2.17
553 1241 1.006391 CGCGCAAACTCGACGATATTT 60.006 47.619 8.75 0.00 33.36 1.40
554 1242 0.570734 CGCGCAAACTCGACGATATT 59.429 50.000 8.75 0.00 33.36 1.28
555 1243 0.248336 TCGCGCAAACTCGACGATAT 60.248 50.000 8.75 0.00 34.84 1.63
556 1244 0.248336 ATCGCGCAAACTCGACGATA 60.248 50.000 8.75 0.00 42.22 2.92
557 1245 0.248336 TATCGCGCAAACTCGACGAT 60.248 50.000 8.75 9.36 44.23 3.73
558 1246 0.248336 ATATCGCGCAAACTCGACGA 60.248 50.000 8.75 0.00 35.56 4.20
559 1247 0.570734 AATATCGCGCAAACTCGACG 59.429 50.000 8.75 0.00 35.56 5.12
560 1248 1.332028 CCAATATCGCGCAAACTCGAC 60.332 52.381 8.75 0.00 35.56 4.20
561 1249 0.927537 CCAATATCGCGCAAACTCGA 59.072 50.000 8.75 0.00 37.44 4.04
562 1250 0.654472 GCCAATATCGCGCAAACTCG 60.654 55.000 8.75 0.00 0.00 4.18
563 1251 0.376852 TGCCAATATCGCGCAAACTC 59.623 50.000 8.75 0.00 0.00 3.01
564 1252 0.808125 TTGCCAATATCGCGCAAACT 59.192 45.000 8.75 0.00 39.43 2.66
565 1253 0.913876 GTTGCCAATATCGCGCAAAC 59.086 50.000 8.75 0.00 43.60 2.93
566 1254 0.522286 CGTTGCCAATATCGCGCAAA 60.522 50.000 8.75 0.00 43.60 3.68
567 1255 1.061729 CGTTGCCAATATCGCGCAA 59.938 52.632 8.75 0.00 40.06 4.85
568 1256 1.157257 ATCGTTGCCAATATCGCGCA 61.157 50.000 8.75 0.00 0.00 6.09
569 1257 0.451135 GATCGTTGCCAATATCGCGC 60.451 55.000 0.00 0.00 0.00 6.86
570 1258 1.136529 CAGATCGTTGCCAATATCGCG 60.137 52.381 0.00 0.00 0.00 5.87
571 1259 2.135139 TCAGATCGTTGCCAATATCGC 58.865 47.619 0.00 0.00 0.00 4.58
572 1260 2.733552 CCTCAGATCGTTGCCAATATCG 59.266 50.000 0.00 0.00 0.00 2.92
573 1261 3.070018 CCCTCAGATCGTTGCCAATATC 58.930 50.000 0.00 0.00 0.00 1.63
574 1262 2.811873 GCCCTCAGATCGTTGCCAATAT 60.812 50.000 0.00 0.00 0.00 1.28
575 1263 1.475034 GCCCTCAGATCGTTGCCAATA 60.475 52.381 0.00 0.00 0.00 1.90
576 1264 0.749454 GCCCTCAGATCGTTGCCAAT 60.749 55.000 0.00 0.00 0.00 3.16
577 1265 1.377202 GCCCTCAGATCGTTGCCAA 60.377 57.895 0.00 0.00 0.00 4.52
578 1266 2.268920 GCCCTCAGATCGTTGCCA 59.731 61.111 0.00 0.00 0.00 4.92
579 1267 2.892425 CGCCCTCAGATCGTTGCC 60.892 66.667 0.00 0.00 0.00 4.52
580 1268 2.167861 GTCGCCCTCAGATCGTTGC 61.168 63.158 0.00 0.00 0.00 4.17
581 1269 1.874019 CGTCGCCCTCAGATCGTTG 60.874 63.158 0.00 0.00 0.00 4.10
582 1270 2.044555 TCGTCGCCCTCAGATCGTT 61.045 57.895 0.00 0.00 0.00 3.85
583 1271 2.437895 TCGTCGCCCTCAGATCGT 60.438 61.111 0.00 0.00 0.00 3.73
584 1272 1.158484 TAGTCGTCGCCCTCAGATCG 61.158 60.000 0.00 0.00 0.00 3.69
585 1273 1.022735 TTAGTCGTCGCCCTCAGATC 58.977 55.000 0.00 0.00 0.00 2.75
586 1274 1.471119 TTTAGTCGTCGCCCTCAGAT 58.529 50.000 0.00 0.00 0.00 2.90
587 1275 1.250328 TTTTAGTCGTCGCCCTCAGA 58.750 50.000 0.00 0.00 0.00 3.27
588 1276 1.725164 GTTTTTAGTCGTCGCCCTCAG 59.275 52.381 0.00 0.00 0.00 3.35
589 1277 1.787012 GTTTTTAGTCGTCGCCCTCA 58.213 50.000 0.00 0.00 0.00 3.86
590 1278 0.712222 CGTTTTTAGTCGTCGCCCTC 59.288 55.000 0.00 0.00 0.00 4.30
591 1279 0.668401 CCGTTTTTAGTCGTCGCCCT 60.668 55.000 0.00 0.00 0.00 5.19
592 1280 0.667184 TCCGTTTTTAGTCGTCGCCC 60.667 55.000 0.00 0.00 0.00 6.13
593 1281 0.712222 CTCCGTTTTTAGTCGTCGCC 59.288 55.000 0.00 0.00 0.00 5.54
594 1282 1.384742 GACTCCGTTTTTAGTCGTCGC 59.615 52.381 0.00 0.00 33.38 5.19
595 1283 2.653890 TGACTCCGTTTTTAGTCGTCG 58.346 47.619 0.00 0.00 44.14 5.12
596 1284 4.091075 GGAATGACTCCGTTTTTAGTCGTC 59.909 45.833 0.00 0.00 44.14 4.20
597 1285 3.992427 GGAATGACTCCGTTTTTAGTCGT 59.008 43.478 0.00 0.00 44.14 4.34
598 1286 3.370061 GGGAATGACTCCGTTTTTAGTCG 59.630 47.826 0.00 0.00 46.51 4.18
599 1287 4.153655 GTGGGAATGACTCCGTTTTTAGTC 59.846 45.833 0.00 0.00 46.51 2.59
600 1288 4.070009 GTGGGAATGACTCCGTTTTTAGT 58.930 43.478 0.00 0.00 46.51 2.24
601 1289 3.124636 CGTGGGAATGACTCCGTTTTTAG 59.875 47.826 0.00 0.00 46.51 1.85
602 1290 3.068560 CGTGGGAATGACTCCGTTTTTA 58.931 45.455 0.00 0.00 46.51 1.52
603 1291 1.877443 CGTGGGAATGACTCCGTTTTT 59.123 47.619 0.00 0.00 46.51 1.94
604 1292 1.519408 CGTGGGAATGACTCCGTTTT 58.481 50.000 0.00 0.00 46.51 2.43
605 1293 0.953960 GCGTGGGAATGACTCCGTTT 60.954 55.000 0.00 0.00 46.51 3.60
606 1294 1.375523 GCGTGGGAATGACTCCGTT 60.376 57.895 0.00 0.00 46.51 4.44
607 1295 2.264794 GCGTGGGAATGACTCCGT 59.735 61.111 0.00 0.00 46.51 4.69
608 1296 2.885644 CGCGTGGGAATGACTCCG 60.886 66.667 0.00 0.00 46.51 4.63
609 1297 1.810030 GACGCGTGGGAATGACTCC 60.810 63.158 20.70 0.00 44.54 3.85
610 1298 0.669318 TTGACGCGTGGGAATGACTC 60.669 55.000 20.70 0.00 0.00 3.36
611 1299 0.670546 CTTGACGCGTGGGAATGACT 60.671 55.000 20.70 0.00 0.00 3.41
612 1300 1.787847 CTTGACGCGTGGGAATGAC 59.212 57.895 20.70 0.00 0.00 3.06
613 1301 2.032634 GCTTGACGCGTGGGAATGA 61.033 57.895 20.70 0.00 0.00 2.57
614 1302 0.739462 TAGCTTGACGCGTGGGAATG 60.739 55.000 20.70 2.87 45.59 2.67
615 1303 0.460284 CTAGCTTGACGCGTGGGAAT 60.460 55.000 20.70 1.64 45.59 3.01
616 1304 1.080093 CTAGCTTGACGCGTGGGAA 60.080 57.895 20.70 5.53 45.59 3.97
617 1305 2.571757 CTAGCTTGACGCGTGGGA 59.428 61.111 20.70 0.06 45.59 4.37
618 1306 3.188786 GCTAGCTTGACGCGTGGG 61.189 66.667 20.70 7.48 45.59 4.61
619 1307 3.545481 CGCTAGCTTGACGCGTGG 61.545 66.667 20.70 7.90 45.59 4.94
624 1312 4.796231 ACCGGCGCTAGCTTGACG 62.796 66.667 13.93 12.09 44.37 4.35
625 1313 2.434359 AACCGGCGCTAGCTTGAC 60.434 61.111 13.93 0.00 44.37 3.18
626 1314 2.125673 GAACCGGCGCTAGCTTGA 60.126 61.111 13.93 0.00 44.37 3.02
627 1315 3.554692 CGAACCGGCGCTAGCTTG 61.555 66.667 13.93 0.00 44.37 4.01
628 1316 3.984200 GACGAACCGGCGCTAGCTT 62.984 63.158 13.93 0.00 44.37 3.74
629 1317 4.493747 GACGAACCGGCGCTAGCT 62.494 66.667 13.93 0.00 44.37 3.32
630 1318 4.493747 AGACGAACCGGCGCTAGC 62.494 66.667 7.64 4.06 41.28 3.42
631 1319 1.434622 TAGAGACGAACCGGCGCTAG 61.435 60.000 7.64 0.59 44.30 3.42
632 1320 1.434622 CTAGAGACGAACCGGCGCTA 61.435 60.000 7.64 5.63 44.30 4.26
634 1322 2.278013 CTAGAGACGAACCGGCGC 60.278 66.667 0.00 0.00 41.28 6.53
635 1323 1.062206 GTCTAGAGACGAACCGGCG 59.938 63.158 0.00 0.00 41.28 6.46
644 1332 5.099575 GCTGTAAAAGAGCTGTCTAGAGAC 58.900 45.833 0.00 2.56 44.97 3.36
645 1333 4.142578 CGCTGTAAAAGAGCTGTCTAGAGA 60.143 45.833 0.00 0.00 34.03 3.10
646 1334 4.101942 CGCTGTAAAAGAGCTGTCTAGAG 58.898 47.826 0.00 0.00 34.03 2.43
647 1335 4.098055 CGCTGTAAAAGAGCTGTCTAGA 57.902 45.455 0.00 0.00 34.03 2.43
656 1344 1.026718 CCCAGGGCGCTGTAAAAGAG 61.027 60.000 26.94 11.29 0.00 2.85
657 1345 1.002624 CCCAGGGCGCTGTAAAAGA 60.003 57.895 26.94 0.00 0.00 2.52
658 1346 2.046285 CCCCAGGGCGCTGTAAAAG 61.046 63.158 26.94 12.64 0.00 2.27
659 1347 2.034999 CCCCAGGGCGCTGTAAAA 59.965 61.111 26.94 0.00 0.00 1.52
660 1348 3.253838 ACCCCAGGGCGCTGTAAA 61.254 61.111 26.94 0.00 39.32 2.01
661 1349 3.712907 GACCCCAGGGCGCTGTAA 61.713 66.667 26.94 0.00 39.32 2.41
667 1355 4.891727 CGATTCGACCCCAGGGCG 62.892 72.222 1.40 1.40 39.32 6.13
668 1356 4.547367 CCGATTCGACCCCAGGGC 62.547 72.222 7.83 0.00 39.32 5.19
669 1357 4.547367 GCCGATTCGACCCCAGGG 62.547 72.222 7.83 0.00 42.03 4.45
670 1358 3.470888 AGCCGATTCGACCCCAGG 61.471 66.667 7.83 0.00 0.00 4.45
671 1359 2.202932 CAGCCGATTCGACCCCAG 60.203 66.667 7.83 0.00 0.00 4.45
672 1360 3.781307 CCAGCCGATTCGACCCCA 61.781 66.667 7.83 0.00 0.00 4.96
673 1361 1.469335 TATCCAGCCGATTCGACCCC 61.469 60.000 7.83 0.00 31.92 4.95
674 1362 0.608640 ATATCCAGCCGATTCGACCC 59.391 55.000 7.83 0.00 31.92 4.46
675 1363 1.714794 CATATCCAGCCGATTCGACC 58.285 55.000 7.83 0.00 31.92 4.79
676 1364 1.071605 GCATATCCAGCCGATTCGAC 58.928 55.000 7.83 0.00 31.92 4.20
677 1365 0.969149 AGCATATCCAGCCGATTCGA 59.031 50.000 7.83 0.00 31.92 3.71
678 1366 1.067283 AGAGCATATCCAGCCGATTCG 60.067 52.381 0.00 0.00 31.92 3.34
679 1367 2.758736 AGAGCATATCCAGCCGATTC 57.241 50.000 0.00 0.00 31.92 2.52
680 1368 4.764172 GATAAGAGCATATCCAGCCGATT 58.236 43.478 0.00 0.00 31.92 3.34
681 1369 4.399004 GATAAGAGCATATCCAGCCGAT 57.601 45.455 0.00 0.00 34.73 4.18
682 1370 3.876274 GATAAGAGCATATCCAGCCGA 57.124 47.619 0.00 0.00 0.00 5.54
688 1376 2.028112 TGCCACGGATAAGAGCATATCC 60.028 50.000 11.30 11.30 45.30 2.59
689 1377 3.319137 TGCCACGGATAAGAGCATATC 57.681 47.619 0.00 0.00 0.00 1.63
690 1378 3.603532 CATGCCACGGATAAGAGCATAT 58.396 45.455 0.00 0.00 42.04 1.78
691 1379 2.871637 GCATGCCACGGATAAGAGCATA 60.872 50.000 6.36 0.00 42.04 3.14
692 1380 1.888215 CATGCCACGGATAAGAGCAT 58.112 50.000 0.00 0.00 44.66 3.79
693 1381 0.815213 GCATGCCACGGATAAGAGCA 60.815 55.000 6.36 0.00 37.94 4.26
724 1412 0.616111 TCTTCACTGCTCCTCCTCCC 60.616 60.000 0.00 0.00 0.00 4.30
727 1415 0.612744 GCTTCTTCACTGCTCCTCCT 59.387 55.000 0.00 0.00 0.00 3.69
728 1416 0.392327 GGCTTCTTCACTGCTCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
729 1417 0.739112 CGGCTTCTTCACTGCTCCTC 60.739 60.000 0.00 0.00 0.00 3.71
770 1458 1.583054 GCCACATATCCCTGTCGTTC 58.417 55.000 0.00 0.00 0.00 3.95
774 1495 1.071471 CGGGCCACATATCCCTGTC 59.929 63.158 4.39 0.00 40.41 3.51
794 1516 2.030401 TGAACATGTGTACGGCGCC 61.030 57.895 19.07 19.07 0.00 6.53
825 1551 4.634199 ACAGGCAATCACAAAAAGGAATG 58.366 39.130 0.00 0.00 0.00 2.67
828 1554 3.295093 TGACAGGCAATCACAAAAAGGA 58.705 40.909 0.00 0.00 0.00 3.36
833 1594 0.961019 GGCTGACAGGCAATCACAAA 59.039 50.000 23.18 0.00 40.97 2.83
1239 2032 3.400054 GGGTCGGAGGGGTGGAAG 61.400 72.222 0.00 0.00 0.00 3.46
1976 2797 3.022406 GGGATCGTGTAGTAGTTGAGGT 58.978 50.000 0.00 0.00 0.00 3.85
2313 3134 2.546789 CCCGAAAGTATTTGGCGATACC 59.453 50.000 7.08 0.00 39.27 2.73
2315 3136 3.823281 TCCCGAAAGTATTTGGCGATA 57.177 42.857 0.00 0.00 39.27 2.92
2337 3158 2.795329 ACACCTGCGGAATTTGAGAAT 58.205 42.857 0.00 0.00 0.00 2.40
2341 3162 3.066291 ACATACACCTGCGGAATTTGA 57.934 42.857 0.00 0.00 0.00 2.69
2342 3163 3.938963 ACTACATACACCTGCGGAATTTG 59.061 43.478 0.00 0.00 0.00 2.32
2354 3175 5.166398 GTTCCACACCAGTACTACATACAC 58.834 45.833 0.00 0.00 36.09 2.90
2355 3176 4.082625 CGTTCCACACCAGTACTACATACA 60.083 45.833 0.00 0.00 36.09 2.29
2356 3177 4.156556 TCGTTCCACACCAGTACTACATAC 59.843 45.833 0.00 0.00 0.00 2.39
2357 3178 4.334552 TCGTTCCACACCAGTACTACATA 58.665 43.478 0.00 0.00 0.00 2.29
2358 3179 3.159472 TCGTTCCACACCAGTACTACAT 58.841 45.455 0.00 0.00 0.00 2.29
2362 3183 2.367567 ACATTCGTTCCACACCAGTACT 59.632 45.455 0.00 0.00 0.00 2.73
2375 3215 1.274167 TCGCCTCCAGTTACATTCGTT 59.726 47.619 0.00 0.00 0.00 3.85
2419 3352 9.330063 CCTGCACTGTATTTCTGAATATTCTTA 57.670 33.333 16.24 1.98 30.84 2.10
2420 3353 8.049117 TCCTGCACTGTATTTCTGAATATTCTT 58.951 33.333 16.24 0.09 30.84 2.52
2449 3388 2.460534 TCGGTTTGCTGTACGAACTGC 61.461 52.381 0.00 0.99 45.42 4.40
2501 3440 2.539274 GCGCTGTGCTGAAAAATGAAAA 59.461 40.909 5.84 0.00 41.73 2.29
2502 3441 2.126467 GCGCTGTGCTGAAAAATGAAA 58.874 42.857 5.84 0.00 41.73 2.69
2526 4184 3.381272 CGGTGGTTGCATTTATGAGGATT 59.619 43.478 0.00 0.00 0.00 3.01
2544 4202 0.250295 TCAACCTGCTTTCTCCGGTG 60.250 55.000 0.00 0.00 0.00 4.94
2553 4211 4.463891 CAGGACCAATAATTCAACCTGCTT 59.536 41.667 0.00 0.00 37.27 3.91
2559 4217 4.402155 TGATGCCAGGACCAATAATTCAAC 59.598 41.667 0.00 0.00 0.00 3.18
2574 4232 5.747197 GCATTTCTGAAAGTTATGATGCCAG 59.253 40.000 8.95 0.00 34.21 4.85
2687 4349 6.608610 GTTGTTATCGTATGGGGATTTATGC 58.391 40.000 0.00 0.00 0.00 3.14
2708 4370 2.863740 TGTGTCAGTAGCTTGTTCGTTG 59.136 45.455 0.00 0.00 0.00 4.10
2711 4374 2.983136 CTCTGTGTCAGTAGCTTGTTCG 59.017 50.000 0.00 0.00 32.61 3.95
2724 4387 7.167831 GAAACTAAGAAAGTGTCTCTGTGTC 57.832 40.000 0.00 0.00 39.14 3.67
2744 4407 7.548427 GGACAGGGTAGAACATAAGTAAGAAAC 59.452 40.741 0.00 0.00 0.00 2.78
2751 4414 3.798515 TGGGACAGGGTAGAACATAAGT 58.201 45.455 0.00 0.00 0.00 2.24
2813 4478 7.708998 TCCAATAAAGTTTACTGGTGTTTGTC 58.291 34.615 19.70 0.00 0.00 3.18
2840 4505 5.452776 CGGATTCAAGCCAATACCTAGTACA 60.453 44.000 0.00 0.00 0.00 2.90
2841 4506 4.989168 CGGATTCAAGCCAATACCTAGTAC 59.011 45.833 0.00 0.00 0.00 2.73
2842 4507 4.502604 GCGGATTCAAGCCAATACCTAGTA 60.503 45.833 0.00 0.00 0.00 1.82
2843 4508 3.744530 GCGGATTCAAGCCAATACCTAGT 60.745 47.826 0.00 0.00 0.00 2.57
2844 4509 2.808543 GCGGATTCAAGCCAATACCTAG 59.191 50.000 0.00 0.00 0.00 3.02
2845 4510 2.438021 AGCGGATTCAAGCCAATACCTA 59.562 45.455 0.00 0.00 0.00 3.08
2846 4511 1.212935 AGCGGATTCAAGCCAATACCT 59.787 47.619 0.00 0.00 0.00 3.08
2847 4512 1.334869 CAGCGGATTCAAGCCAATACC 59.665 52.381 0.00 0.00 0.00 2.73
2848 4513 2.017049 ACAGCGGATTCAAGCCAATAC 58.983 47.619 0.00 0.00 0.00 1.89
2849 4514 2.418368 ACAGCGGATTCAAGCCAATA 57.582 45.000 0.00 0.00 0.00 1.90
2850 4515 2.017049 GTACAGCGGATTCAAGCCAAT 58.983 47.619 0.00 0.00 0.00 3.16
2851 4516 1.271108 TGTACAGCGGATTCAAGCCAA 60.271 47.619 0.00 0.00 0.00 4.52
2852 4517 0.323302 TGTACAGCGGATTCAAGCCA 59.677 50.000 0.00 0.00 0.00 4.75
2853 4518 1.668419 ATGTACAGCGGATTCAAGCC 58.332 50.000 0.33 0.00 0.00 4.35
2854 4519 3.621268 TGTTATGTACAGCGGATTCAAGC 59.379 43.478 0.33 0.00 31.68 4.01
2898 4563 0.179056 CCGCAAACCCCTGATATCGT 60.179 55.000 0.00 0.00 0.00 3.73
2899 4564 0.105964 TCCGCAAACCCCTGATATCG 59.894 55.000 0.00 0.00 0.00 2.92
2900 4565 1.416401 TCTCCGCAAACCCCTGATATC 59.584 52.381 0.00 0.00 0.00 1.63
2901 4566 1.507140 TCTCCGCAAACCCCTGATAT 58.493 50.000 0.00 0.00 0.00 1.63
2902 4567 1.416401 GATCTCCGCAAACCCCTGATA 59.584 52.381 0.00 0.00 0.00 2.15
2903 4568 0.181350 GATCTCCGCAAACCCCTGAT 59.819 55.000 0.00 0.00 0.00 2.90
2909 4574 1.230324 GGCATAGATCTCCGCAAACC 58.770 55.000 15.88 0.14 0.00 3.27
2917 4582 2.703007 AGTGGAGGTTGGCATAGATCTC 59.297 50.000 0.00 0.00 0.00 2.75
3028 4732 6.659668 CCTCATGATGCTAGATCATTTCCAAT 59.340 38.462 12.32 0.00 36.69 3.16
3064 4768 3.980583 TGGTCGACTCCAGAACAAC 57.019 52.632 16.46 0.00 31.60 3.32
3078 4782 0.326264 ATTCTGTGACTGGCCTGGTC 59.674 55.000 14.82 16.81 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.