Multiple sequence alignment - TraesCS6D01G149400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G149400 chr6D 100.000 3834 0 0 1 3834 123115601 123119434 0.000000e+00 7081.0
1 TraesCS6D01G149400 chr6D 98.857 175 2 0 773 947 470664467 470664641 2.880000e-81 313.0
2 TraesCS6D01G149400 chr6A 93.379 2643 126 23 946 3574 158069317 158066710 0.000000e+00 3866.0
3 TraesCS6D01G149400 chr6A 90.341 176 16 1 3619 3794 158066697 158066523 2.980000e-56 230.0
4 TraesCS6D01G149400 chr6A 93.706 143 8 1 514 656 158071498 158071357 3.000000e-51 213.0
5 TraesCS6D01G149400 chr6A 93.023 129 8 1 646 774 158069434 158069307 1.820000e-43 187.0
6 TraesCS6D01G149400 chr6A 95.690 116 5 0 174 289 158072632 158072517 1.820000e-43 187.0
7 TraesCS6D01G149400 chr6A 100.000 38 0 0 445 482 158071535 158071498 1.910000e-08 71.3
8 TraesCS6D01G149400 chr6A 100.000 34 0 0 3801 3834 158066497 158066464 3.200000e-06 63.9
9 TraesCS6D01G149400 chr3B 89.601 1404 96 19 946 2333 242661459 242662828 0.000000e+00 1738.0
10 TraesCS6D01G149400 chr3B 93.126 451 30 1 2329 2778 242668153 242668603 0.000000e+00 660.0
11 TraesCS6D01G149400 chr3B 93.233 133 8 1 830 961 680076580 680076448 1.090000e-45 195.0
12 TraesCS6D01G149400 chr3B 95.122 82 4 0 690 771 242661385 242661466 3.110000e-26 130.0
13 TraesCS6D01G149400 chr6B 93.701 1143 66 5 1632 2773 216875059 216876196 0.000000e+00 1707.0
14 TraesCS6D01G149400 chr6B 94.855 622 30 2 3213 3833 216877123 216877743 0.000000e+00 970.0
15 TraesCS6D01G149400 chr6B 96.508 315 11 0 174 488 216693019 216693333 4.390000e-144 521.0
16 TraesCS6D01G149400 chr6B 94.359 195 11 0 1018 1212 216870212 216870406 2.240000e-77 300.0
17 TraesCS6D01G149400 chr6B 97.015 67 2 0 705 771 216870125 216870191 3.130000e-21 113.0
18 TraesCS6D01G149400 chr6B 94.595 37 1 1 3380 3415 18884651 18884615 5.350000e-04 56.5
19 TraesCS6D01G149400 chr3A 92.566 1130 67 10 967 2089 202602035 202600916 0.000000e+00 1605.0
20 TraesCS6D01G149400 chr3A 87.340 703 63 9 2089 2778 202599509 202598820 0.000000e+00 782.0
21 TraesCS6D01G149400 chr3A 90.306 196 13 6 767 958 57718534 57718727 6.360000e-63 252.0
22 TraesCS6D01G149400 chr3A 93.750 80 3 2 693 771 202655554 202655476 6.730000e-23 119.0
23 TraesCS6D01G149400 chr3D 88.491 643 48 9 2139 2778 167380358 167380977 0.000000e+00 754.0
24 TraesCS6D01G149400 chr3D 90.959 542 42 4 976 1513 167354960 167355498 0.000000e+00 723.0
25 TraesCS6D01G149400 chr3D 91.395 337 26 1 1507 1843 167379237 167379570 3.490000e-125 459.0
26 TraesCS6D01G149400 chr3D 90.801 337 28 1 1507 1843 167378574 167378907 7.560000e-122 448.0
27 TraesCS6D01G149400 chr3D 90.504 337 29 1 1507 1843 167377912 167378245 3.520000e-120 442.0
28 TraesCS6D01G149400 chr3D 95.833 192 6 2 764 954 378246782 378246592 3.720000e-80 309.0
29 TraesCS6D01G149400 chr3D 92.611 203 9 6 752 951 594961551 594961750 1.740000e-73 287.0
30 TraesCS6D01G149400 chr3D 87.764 237 20 3 1837 2064 167380076 167380312 6.310000e-68 268.0
31 TraesCS6D01G149400 chr1D 96.842 190 6 0 765 954 297155985 297155796 6.180000e-83 318.0
32 TraesCS6D01G149400 chr4D 95.288 191 9 0 764 954 374833999 374834189 1.730000e-78 303.0
33 TraesCS6D01G149400 chr5D 96.237 186 4 3 767 951 27888489 27888672 6.220000e-78 302.0
34 TraesCS6D01G149400 chr5D 95.722 187 8 0 768 954 58419328 58419514 6.220000e-78 302.0
35 TraesCS6D01G149400 chr5D 95.699 186 8 0 769 954 218937296 218937481 2.240000e-77 300.0
36 TraesCS6D01G149400 chr5D 94.709 189 8 2 767 954 15537833 15538020 3.750000e-75 292.0
37 TraesCS6D01G149400 chr5A 88.660 194 18 4 766 958 708608598 708608788 2.300000e-57 233.0
38 TraesCS6D01G149400 chr5A 89.630 135 11 2 830 961 495481380 495481246 6.590000e-38 169.0
39 TraesCS6D01G149400 chr1B 74.522 471 94 24 3335 3794 348472792 348472337 8.460000e-42 182.0
40 TraesCS6D01G149400 chr7A 79.191 173 30 6 3335 3503 514287483 514287313 8.700000e-22 115.0
41 TraesCS6D01G149400 chr7B 90.278 72 7 0 588 659 196657525 196657454 1.130000e-15 95.3
42 TraesCS6D01G149400 chr7D 84.058 69 7 4 3388 3453 115109815 115109748 3.200000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G149400 chr6D 123115601 123119434 3833 False 7081.000000 7081 100.000000 1 3834 1 chr6D.!!$F1 3833
1 TraesCS6D01G149400 chr6A 158066464 158072632 6168 True 688.314286 3866 95.162714 174 3834 7 chr6A.!!$R1 3660
2 TraesCS6D01G149400 chr3B 242661385 242662828 1443 False 934.000000 1738 92.361500 690 2333 2 chr3B.!!$F2 1643
3 TraesCS6D01G149400 chr6B 216875059 216877743 2684 False 1338.500000 1707 94.278000 1632 3833 2 chr6B.!!$F3 2201
4 TraesCS6D01G149400 chr3A 202598820 202602035 3215 True 1193.500000 1605 89.953000 967 2778 2 chr3A.!!$R2 1811
5 TraesCS6D01G149400 chr3D 167354960 167355498 538 False 723.000000 723 90.959000 976 1513 1 chr3D.!!$F1 537
6 TraesCS6D01G149400 chr3D 167377912 167380977 3065 False 474.200000 754 89.791000 1507 2778 5 chr3D.!!$F3 1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 1375 0.030297 ACCTGATCCTGATGGCTCCT 60.030 55.0 0.0 0.0 0.00 3.69 F
858 3618 0.394938 ATACAACCCACGTCAGCACA 59.605 50.0 0.0 0.0 0.00 4.57 F
2127 8168 0.107945 GCACCTGGAAGAAGAGCGAT 60.108 55.0 0.0 0.0 34.07 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 6596 0.462759 CGACCTGATCCAAGAAGCCC 60.463 60.000 0.0 0.0 0.0 5.19 R
2586 8643 1.910722 CTCTCCCCTGGTCATGGTG 59.089 63.158 0.0 0.0 0.0 4.17 R
3726 10535 0.251386 TCTCTCACCAAGTCGCCTCT 60.251 55.000 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.414700 CGCAGACGCTGGTTGGTC 61.415 66.667 8.57 0.00 35.30 4.02
31 32 2.280797 GCAGACGCTGGTTGGTCA 60.281 61.111 8.57 0.00 35.63 4.02
32 33 1.891919 GCAGACGCTGGTTGGTCAA 60.892 57.895 8.57 0.00 35.63 3.18
33 34 1.237285 GCAGACGCTGGTTGGTCAAT 61.237 55.000 8.57 0.00 35.63 2.57
34 35 0.798776 CAGACGCTGGTTGGTCAATC 59.201 55.000 0.00 0.00 35.63 2.67
35 36 0.396435 AGACGCTGGTTGGTCAATCA 59.604 50.000 0.00 0.00 35.63 2.57
36 37 0.517316 GACGCTGGTTGGTCAATCAC 59.483 55.000 0.00 0.00 33.41 3.06
45 46 3.873781 GGTCAATCACCGGATCCAA 57.126 52.632 9.46 0.00 34.56 3.53
46 47 2.122783 GGTCAATCACCGGATCCAAA 57.877 50.000 9.46 0.00 34.56 3.28
47 48 2.017049 GGTCAATCACCGGATCCAAAG 58.983 52.381 9.46 1.93 34.56 2.77
48 49 1.401905 GTCAATCACCGGATCCAAAGC 59.598 52.381 9.46 0.00 31.88 3.51
49 50 0.740737 CAATCACCGGATCCAAAGCC 59.259 55.000 9.46 0.00 31.88 4.35
55 56 2.361104 GGATCCAAAGCCGTGGCA 60.361 61.111 14.29 0.00 44.88 4.92
56 57 2.409870 GGATCCAAAGCCGTGGCAG 61.410 63.158 14.29 2.38 44.88 4.85
57 58 3.056313 GATCCAAAGCCGTGGCAGC 62.056 63.158 14.29 0.00 44.88 5.25
58 59 3.866379 ATCCAAAGCCGTGGCAGCA 62.866 57.895 14.29 0.00 44.88 4.41
59 60 3.376078 CCAAAGCCGTGGCAGCAT 61.376 61.111 14.29 0.00 44.88 3.79
60 61 2.180017 CAAAGCCGTGGCAGCATC 59.820 61.111 14.29 0.00 44.88 3.91
61 62 2.034687 AAAGCCGTGGCAGCATCT 59.965 55.556 14.29 0.00 44.88 2.90
62 63 2.338015 AAAGCCGTGGCAGCATCTG 61.338 57.895 14.29 0.00 44.88 2.90
93 94 4.191015 GGGGGATTCGTCCAGGGC 62.191 72.222 0.00 0.00 0.00 5.19
94 95 4.547367 GGGGATTCGTCCAGGGCG 62.547 72.222 7.30 7.30 0.00 6.13
95 96 3.467226 GGGATTCGTCCAGGGCGA 61.467 66.667 13.56 13.56 36.51 5.54
96 97 2.107141 GGATTCGTCCAGGGCGAG 59.893 66.667 17.34 0.00 39.61 5.03
97 98 2.586357 GATTCGTCCAGGGCGAGC 60.586 66.667 17.34 9.44 39.61 5.03
98 99 4.514577 ATTCGTCCAGGGCGAGCG 62.515 66.667 17.34 0.00 39.61 5.03
114 115 3.414700 CGCAGACGCTGGTTGGTC 61.415 66.667 8.57 0.00 35.30 4.02
115 116 3.414700 GCAGACGCTGGTTGGTCG 61.415 66.667 8.57 0.00 38.20 4.79
116 117 2.738521 CAGACGCTGGTTGGTCGG 60.739 66.667 0.00 0.00 38.20 4.79
117 118 2.915659 AGACGCTGGTTGGTCGGA 60.916 61.111 0.00 0.00 38.20 4.55
118 119 2.737376 GACGCTGGTTGGTCGGAC 60.737 66.667 0.00 0.00 0.00 4.79
119 120 3.509137 GACGCTGGTTGGTCGGACA 62.509 63.158 10.76 0.00 0.00 4.02
120 121 3.041940 CGCTGGTTGGTCGGACAC 61.042 66.667 10.76 0.09 0.00 3.67
131 132 4.201951 CGGACACCGGATCCAAAG 57.798 61.111 23.52 1.93 44.15 2.77
132 133 2.106683 CGGACACCGGATCCAAAGC 61.107 63.158 23.52 0.00 44.15 3.51
133 134 1.749258 GGACACCGGATCCAAAGCC 60.749 63.158 20.46 2.17 36.15 4.35
139 140 2.272146 GGATCCAAAGCCGAGGCA 59.728 61.111 17.18 0.00 44.88 4.75
140 141 1.821332 GGATCCAAAGCCGAGGCAG 60.821 63.158 17.18 5.63 44.88 4.85
141 142 2.439156 ATCCAAAGCCGAGGCAGC 60.439 61.111 17.18 0.00 44.88 5.25
142 143 3.272364 ATCCAAAGCCGAGGCAGCA 62.272 57.895 17.18 0.00 44.88 4.41
143 144 2.563013 ATCCAAAGCCGAGGCAGCAT 62.563 55.000 17.18 0.00 44.88 3.79
144 145 2.345760 CCAAAGCCGAGGCAGCATT 61.346 57.895 17.18 3.04 44.88 3.56
145 146 1.588082 CAAAGCCGAGGCAGCATTT 59.412 52.632 17.18 5.13 44.88 2.32
146 147 0.734942 CAAAGCCGAGGCAGCATTTG 60.735 55.000 17.18 13.38 44.88 2.32
147 148 1.181098 AAAGCCGAGGCAGCATTTGT 61.181 50.000 17.18 0.00 44.88 2.83
148 149 0.322456 AAGCCGAGGCAGCATTTGTA 60.322 50.000 17.18 0.00 44.88 2.41
149 150 0.745845 AGCCGAGGCAGCATTTGTAG 60.746 55.000 17.18 0.00 44.88 2.74
150 151 1.723870 CCGAGGCAGCATTTGTAGC 59.276 57.895 0.00 0.00 0.00 3.58
151 152 1.349627 CGAGGCAGCATTTGTAGCG 59.650 57.895 0.00 0.00 37.01 4.26
152 153 1.723870 GAGGCAGCATTTGTAGCGG 59.276 57.895 0.00 0.00 37.01 5.52
153 154 1.718757 GAGGCAGCATTTGTAGCGGG 61.719 60.000 0.00 0.00 37.01 6.13
154 155 2.102946 GCAGCATTTGTAGCGGGC 59.897 61.111 0.00 0.00 37.01 6.13
155 156 2.800736 CAGCATTTGTAGCGGGCC 59.199 61.111 0.00 0.00 37.01 5.80
156 157 2.440247 AGCATTTGTAGCGGGCCC 60.440 61.111 13.57 13.57 37.01 5.80
157 158 3.887868 GCATTTGTAGCGGGCCCG 61.888 66.667 40.26 40.26 43.09 6.13
158 159 2.437716 CATTTGTAGCGGGCCCGT 60.438 61.111 42.53 30.68 42.09 5.28
159 160 2.437716 ATTTGTAGCGGGCCCGTG 60.438 61.111 42.53 19.61 42.09 4.94
160 161 3.987954 ATTTGTAGCGGGCCCGTGG 62.988 63.158 42.53 18.79 42.09 4.94
258 259 7.246171 AGCCAGACTAGATTCTTGAACTTTA 57.754 36.000 0.00 0.00 0.00 1.85
289 290 5.129634 TCCATAGAAAGAACAACTGCACAA 58.870 37.500 0.00 0.00 0.00 3.33
290 291 5.769662 TCCATAGAAAGAACAACTGCACAAT 59.230 36.000 0.00 0.00 0.00 2.71
291 292 6.939730 TCCATAGAAAGAACAACTGCACAATA 59.060 34.615 0.00 0.00 0.00 1.90
292 293 7.119699 TCCATAGAAAGAACAACTGCACAATAG 59.880 37.037 0.00 0.00 0.00 1.73
293 294 7.094634 CCATAGAAAGAACAACTGCACAATAGT 60.095 37.037 0.00 0.00 0.00 2.12
294 295 6.699575 AGAAAGAACAACTGCACAATAGTT 57.300 33.333 0.00 0.00 38.84 2.24
295 296 7.100458 AGAAAGAACAACTGCACAATAGTTT 57.900 32.000 0.00 0.00 36.29 2.66
296 297 7.547227 AGAAAGAACAACTGCACAATAGTTTT 58.453 30.769 0.00 0.00 36.29 2.43
297 298 7.489113 AGAAAGAACAACTGCACAATAGTTTTG 59.511 33.333 0.00 0.00 36.29 2.44
298 299 5.591099 AGAACAACTGCACAATAGTTTTGG 58.409 37.500 0.00 0.00 36.29 3.28
299 300 5.359576 AGAACAACTGCACAATAGTTTTGGA 59.640 36.000 0.00 0.00 36.29 3.53
300 301 5.186996 ACAACTGCACAATAGTTTTGGAG 57.813 39.130 0.00 0.00 36.29 3.86
301 302 4.644685 ACAACTGCACAATAGTTTTGGAGT 59.355 37.500 0.00 0.00 43.01 3.85
302 303 5.825679 ACAACTGCACAATAGTTTTGGAGTA 59.174 36.000 3.94 0.00 40.62 2.59
303 304 6.017109 ACAACTGCACAATAGTTTTGGAGTAG 60.017 38.462 3.94 2.47 40.62 2.57
304 305 5.865085 ACTGCACAATAGTTTTGGAGTAGA 58.135 37.500 10.85 0.00 39.82 2.59
305 306 5.701290 ACTGCACAATAGTTTTGGAGTAGAC 59.299 40.000 10.85 0.00 39.82 2.59
306 307 5.001232 TGCACAATAGTTTTGGAGTAGACC 58.999 41.667 0.00 0.00 0.00 3.85
307 308 4.092968 GCACAATAGTTTTGGAGTAGACCG 59.907 45.833 0.00 0.00 0.00 4.79
308 309 4.092968 CACAATAGTTTTGGAGTAGACCGC 59.907 45.833 0.00 0.00 0.00 5.68
309 310 4.020485 ACAATAGTTTTGGAGTAGACCGCT 60.020 41.667 0.00 0.00 0.00 5.52
310 311 4.820894 ATAGTTTTGGAGTAGACCGCTT 57.179 40.909 0.00 0.00 0.00 4.68
311 312 3.041508 AGTTTTGGAGTAGACCGCTTC 57.958 47.619 0.00 0.00 0.00 3.86
312 313 2.633481 AGTTTTGGAGTAGACCGCTTCT 59.367 45.455 0.00 0.00 38.51 2.85
313 314 2.994578 GTTTTGGAGTAGACCGCTTCTC 59.005 50.000 0.00 0.00 37.70 2.87
318 319 3.528597 GAGTAGACCGCTTCTCCATTT 57.471 47.619 0.00 0.00 33.77 2.32
319 320 3.449632 GAGTAGACCGCTTCTCCATTTC 58.550 50.000 0.00 0.00 33.77 2.17
320 321 3.100671 AGTAGACCGCTTCTCCATTTCT 58.899 45.455 0.00 0.00 35.55 2.52
321 322 3.515901 AGTAGACCGCTTCTCCATTTCTT 59.484 43.478 0.00 0.00 35.55 2.52
322 323 3.425162 AGACCGCTTCTCCATTTCTTT 57.575 42.857 0.00 0.00 0.00 2.52
323 324 3.756117 AGACCGCTTCTCCATTTCTTTT 58.244 40.909 0.00 0.00 0.00 2.27
324 325 3.753797 AGACCGCTTCTCCATTTCTTTTC 59.246 43.478 0.00 0.00 0.00 2.29
325 326 3.753797 GACCGCTTCTCCATTTCTTTTCT 59.246 43.478 0.00 0.00 0.00 2.52
326 327 4.145052 ACCGCTTCTCCATTTCTTTTCTT 58.855 39.130 0.00 0.00 0.00 2.52
327 328 4.584743 ACCGCTTCTCCATTTCTTTTCTTT 59.415 37.500 0.00 0.00 0.00 2.52
328 329 5.069119 ACCGCTTCTCCATTTCTTTTCTTTT 59.931 36.000 0.00 0.00 0.00 2.27
329 330 5.631096 CCGCTTCTCCATTTCTTTTCTTTTC 59.369 40.000 0.00 0.00 0.00 2.29
330 331 6.442112 CGCTTCTCCATTTCTTTTCTTTTCT 58.558 36.000 0.00 0.00 0.00 2.52
331 332 6.920210 CGCTTCTCCATTTCTTTTCTTTTCTT 59.080 34.615 0.00 0.00 0.00 2.52
332 333 7.436376 CGCTTCTCCATTTCTTTTCTTTTCTTT 59.564 33.333 0.00 0.00 0.00 2.52
333 334 8.546244 GCTTCTCCATTTCTTTTCTTTTCTTTG 58.454 33.333 0.00 0.00 0.00 2.77
334 335 8.947055 TTCTCCATTTCTTTTCTTTTCTTTGG 57.053 30.769 0.00 0.00 0.00 3.28
335 336 7.500141 TCTCCATTTCTTTTCTTTTCTTTGGG 58.500 34.615 0.00 0.00 0.00 4.12
336 337 7.344352 TCTCCATTTCTTTTCTTTTCTTTGGGA 59.656 33.333 0.00 0.00 0.00 4.37
337 338 7.500141 TCCATTTCTTTTCTTTTCTTTGGGAG 58.500 34.615 0.00 0.00 0.00 4.30
338 339 7.344352 TCCATTTCTTTTCTTTTCTTTGGGAGA 59.656 33.333 0.00 0.00 0.00 3.71
339 340 7.986889 CCATTTCTTTTCTTTTCTTTGGGAGAA 59.013 33.333 0.00 0.00 42.56 2.87
356 357 9.920946 TTTGGGAGAAATACAATATAGAAAGCT 57.079 29.630 0.00 0.00 0.00 3.74
357 358 9.561069 TTGGGAGAAATACAATATAGAAAGCTC 57.439 33.333 0.00 0.00 0.00 4.09
358 359 8.157476 TGGGAGAAATACAATATAGAAAGCTCC 58.843 37.037 0.00 0.00 37.03 4.70
359 360 8.379331 GGGAGAAATACAATATAGAAAGCTCCT 58.621 37.037 0.00 0.00 37.69 3.69
360 361 9.213799 GGAGAAATACAATATAGAAAGCTCCTG 57.786 37.037 0.00 0.00 35.39 3.86
361 362 8.614469 AGAAATACAATATAGAAAGCTCCTGC 57.386 34.615 0.00 0.00 40.05 4.85
362 363 7.663493 AGAAATACAATATAGAAAGCTCCTGCC 59.337 37.037 0.00 0.00 40.80 4.85
363 364 3.733337 ACAATATAGAAAGCTCCTGCCG 58.267 45.455 0.00 0.00 40.80 5.69
364 365 3.134804 ACAATATAGAAAGCTCCTGCCGT 59.865 43.478 0.00 0.00 40.80 5.68
365 366 4.344102 ACAATATAGAAAGCTCCTGCCGTA 59.656 41.667 0.00 0.00 40.80 4.02
366 367 2.892784 ATAGAAAGCTCCTGCCGTAC 57.107 50.000 0.00 0.00 40.80 3.67
367 368 1.552578 TAGAAAGCTCCTGCCGTACA 58.447 50.000 0.00 0.00 40.80 2.90
368 369 0.685097 AGAAAGCTCCTGCCGTACAA 59.315 50.000 0.00 0.00 40.80 2.41
369 370 1.071699 AGAAAGCTCCTGCCGTACAAA 59.928 47.619 0.00 0.00 40.80 2.83
370 371 2.084546 GAAAGCTCCTGCCGTACAAAT 58.915 47.619 0.00 0.00 40.80 2.32
371 372 1.453155 AAGCTCCTGCCGTACAAATG 58.547 50.000 0.00 0.00 40.80 2.32
372 373 0.324943 AGCTCCTGCCGTACAAATGT 59.675 50.000 0.00 0.00 40.80 2.71
373 374 1.553248 AGCTCCTGCCGTACAAATGTA 59.447 47.619 0.00 0.00 40.80 2.29
374 375 2.027561 AGCTCCTGCCGTACAAATGTAA 60.028 45.455 0.00 0.00 40.80 2.41
375 376 2.351726 GCTCCTGCCGTACAAATGTAAG 59.648 50.000 0.00 0.00 31.52 2.34
376 377 2.351726 CTCCTGCCGTACAAATGTAAGC 59.648 50.000 8.97 8.97 34.47 3.09
377 378 2.080693 CCTGCCGTACAAATGTAAGCA 58.919 47.619 14.97 14.97 38.75 3.91
378 379 2.159572 CCTGCCGTACAAATGTAAGCAC 60.160 50.000 12.85 4.12 37.23 4.40
379 380 1.807742 TGCCGTACAAATGTAAGCACC 59.192 47.619 12.85 1.45 37.23 5.01
380 381 1.807742 GCCGTACAAATGTAAGCACCA 59.192 47.619 10.39 0.00 34.22 4.17
381 382 2.159572 GCCGTACAAATGTAAGCACCAG 60.160 50.000 10.39 0.00 34.22 4.00
382 383 3.331150 CCGTACAAATGTAAGCACCAGA 58.669 45.455 0.00 0.00 31.52 3.86
383 384 3.370978 CCGTACAAATGTAAGCACCAGAG 59.629 47.826 0.00 0.00 31.52 3.35
384 385 3.994392 CGTACAAATGTAAGCACCAGAGT 59.006 43.478 0.00 0.00 31.52 3.24
388 682 4.887071 ACAAATGTAAGCACCAGAGTTGAA 59.113 37.500 0.00 0.00 0.00 2.69
411 705 4.720649 TCTAGTAGATGGAGTTGTGCAC 57.279 45.455 10.75 10.75 0.00 4.57
412 706 2.770164 AGTAGATGGAGTTGTGCACC 57.230 50.000 15.69 0.00 0.00 5.01
413 707 1.977854 AGTAGATGGAGTTGTGCACCA 59.022 47.619 15.69 4.68 41.94 4.17
414 708 2.076863 GTAGATGGAGTTGTGCACCAC 58.923 52.381 15.69 14.24 40.58 4.16
415 709 0.767375 AGATGGAGTTGTGCACCACT 59.233 50.000 22.51 22.51 40.58 4.00
417 711 2.076863 GATGGAGTTGTGCACCACTAC 58.923 52.381 23.29 23.29 40.58 2.73
421 715 1.128200 AGTTGTGCACCACTACTCCA 58.872 50.000 21.18 0.00 44.27 3.86
422 716 1.070758 AGTTGTGCACCACTACTCCAG 59.929 52.381 21.18 0.00 44.27 3.86
423 717 0.250295 TTGTGCACCACTACTCCAGC 60.250 55.000 15.69 0.00 35.11 4.85
424 718 1.371183 GTGCACCACTACTCCAGCA 59.629 57.895 5.22 0.00 0.00 4.41
425 719 0.951040 GTGCACCACTACTCCAGCAC 60.951 60.000 5.22 0.00 44.31 4.40
427 721 1.964448 CACCACTACTCCAGCACGA 59.036 57.895 0.00 0.00 0.00 4.35
428 722 0.388649 CACCACTACTCCAGCACGAC 60.389 60.000 0.00 0.00 0.00 4.34
429 723 0.826256 ACCACTACTCCAGCACGACA 60.826 55.000 0.00 0.00 0.00 4.35
430 724 0.388649 CCACTACTCCAGCACGACAC 60.389 60.000 0.00 0.00 0.00 3.67
434 728 0.317160 TACTCCAGCACGACACCAAG 59.683 55.000 0.00 0.00 0.00 3.61
435 729 1.367471 CTCCAGCACGACACCAAGA 59.633 57.895 0.00 0.00 0.00 3.02
437 731 0.320683 TCCAGCACGACACCAAGATG 60.321 55.000 0.00 0.00 0.00 2.90
439 733 0.514255 CAGCACGACACCAAGATGTG 59.486 55.000 0.00 0.00 42.05 3.21
482 1309 4.790765 TCAGTATCTTGGCTATGGATCG 57.209 45.455 0.00 0.00 0.00 3.69
483 1310 4.152647 TCAGTATCTTGGCTATGGATCGT 58.847 43.478 0.00 0.00 0.00 3.73
484 1311 4.021981 TCAGTATCTTGGCTATGGATCGTG 60.022 45.833 0.00 0.00 0.00 4.35
486 1313 2.602257 TCTTGGCTATGGATCGTGTG 57.398 50.000 0.00 0.00 0.00 3.82
487 1314 1.831106 TCTTGGCTATGGATCGTGTGT 59.169 47.619 0.00 0.00 0.00 3.72
488 1315 2.236146 TCTTGGCTATGGATCGTGTGTT 59.764 45.455 0.00 0.00 0.00 3.32
489 1316 2.779755 TGGCTATGGATCGTGTGTTT 57.220 45.000 0.00 0.00 0.00 2.83
490 1317 2.627945 TGGCTATGGATCGTGTGTTTC 58.372 47.619 0.00 0.00 0.00 2.78
491 1318 1.940613 GGCTATGGATCGTGTGTTTCC 59.059 52.381 0.00 0.00 0.00 3.13
492 1319 2.420129 GGCTATGGATCGTGTGTTTCCT 60.420 50.000 0.00 0.00 0.00 3.36
493 1320 2.866762 GCTATGGATCGTGTGTTTCCTC 59.133 50.000 0.00 0.00 0.00 3.71
494 1321 3.430929 GCTATGGATCGTGTGTTTCCTCT 60.431 47.826 0.00 0.00 0.00 3.69
495 1322 4.202121 GCTATGGATCGTGTGTTTCCTCTA 60.202 45.833 0.00 0.00 0.00 2.43
496 1323 4.819105 ATGGATCGTGTGTTTCCTCTAA 57.181 40.909 0.00 0.00 0.00 2.10
497 1324 4.819105 TGGATCGTGTGTTTCCTCTAAT 57.181 40.909 0.00 0.00 0.00 1.73
498 1325 5.160607 TGGATCGTGTGTTTCCTCTAATT 57.839 39.130 0.00 0.00 0.00 1.40
499 1326 5.175859 TGGATCGTGTGTTTCCTCTAATTC 58.824 41.667 0.00 0.00 0.00 2.17
500 1327 5.046591 TGGATCGTGTGTTTCCTCTAATTCT 60.047 40.000 0.00 0.00 0.00 2.40
501 1328 5.292101 GGATCGTGTGTTTCCTCTAATTCTG 59.708 44.000 0.00 0.00 0.00 3.02
502 1329 5.462530 TCGTGTGTTTCCTCTAATTCTGA 57.537 39.130 0.00 0.00 0.00 3.27
503 1330 5.849510 TCGTGTGTTTCCTCTAATTCTGAA 58.150 37.500 0.00 0.00 0.00 3.02
504 1331 5.694910 TCGTGTGTTTCCTCTAATTCTGAAC 59.305 40.000 0.00 0.00 0.00 3.18
505 1332 5.696724 CGTGTGTTTCCTCTAATTCTGAACT 59.303 40.000 0.00 0.00 0.00 3.01
506 1333 6.202954 CGTGTGTTTCCTCTAATTCTGAACTT 59.797 38.462 0.00 0.00 0.00 2.66
507 1334 7.384115 CGTGTGTTTCCTCTAATTCTGAACTTA 59.616 37.037 0.00 0.00 0.00 2.24
508 1335 8.496751 GTGTGTTTCCTCTAATTCTGAACTTAC 58.503 37.037 0.00 0.00 0.00 2.34
509 1336 8.208224 TGTGTTTCCTCTAATTCTGAACTTACA 58.792 33.333 0.00 0.00 0.00 2.41
510 1337 8.496751 GTGTTTCCTCTAATTCTGAACTTACAC 58.503 37.037 0.00 0.00 0.00 2.90
511 1338 7.660208 TGTTTCCTCTAATTCTGAACTTACACC 59.340 37.037 0.00 0.00 0.00 4.16
512 1339 6.928348 TCCTCTAATTCTGAACTTACACCA 57.072 37.500 0.00 0.00 0.00 4.17
513 1340 6.698380 TCCTCTAATTCTGAACTTACACCAC 58.302 40.000 0.00 0.00 0.00 4.16
514 1341 6.269077 TCCTCTAATTCTGAACTTACACCACA 59.731 38.462 0.00 0.00 0.00 4.17
515 1342 6.591834 CCTCTAATTCTGAACTTACACCACAG 59.408 42.308 0.00 0.00 0.00 3.66
516 1343 7.062749 TCTAATTCTGAACTTACACCACAGT 57.937 36.000 0.00 0.00 0.00 3.55
517 1344 7.506114 TCTAATTCTGAACTTACACCACAGTT 58.494 34.615 0.00 0.00 35.88 3.16
518 1345 6.619801 AATTCTGAACTTACACCACAGTTC 57.380 37.500 5.30 5.30 46.26 3.01
548 1375 0.030297 ACCTGATCCTGATGGCTCCT 60.030 55.000 0.00 0.00 0.00 3.69
566 1393 6.183361 TGGCTCCTCTAATTCTATTCTGAACC 60.183 42.308 0.00 0.00 0.00 3.62
568 1395 6.928492 GCTCCTCTAATTCTATTCTGAACCAG 59.072 42.308 0.00 0.00 0.00 4.00
569 1396 7.366847 TCCTCTAATTCTATTCTGAACCAGG 57.633 40.000 0.00 0.00 31.51 4.45
570 1397 7.132805 TCCTCTAATTCTATTCTGAACCAGGA 58.867 38.462 0.00 0.00 31.51 3.86
588 1415 2.092538 AGGAAGTGAGCATTGATGGGAG 60.093 50.000 0.00 0.00 0.00 4.30
607 1434 1.072331 AGTACTTGTGGGGCTGTTCTG 59.928 52.381 0.00 0.00 0.00 3.02
625 1452 8.465201 GCTGTTCTGAAATCTGGAAATAAGATT 58.535 33.333 0.00 0.00 44.40 2.40
661 3421 0.915364 AGAGCAGAAACCCCTCATCC 59.085 55.000 0.00 0.00 0.00 3.51
671 3431 4.469469 AACCCCTCATCCTTTTTCTCAA 57.531 40.909 0.00 0.00 0.00 3.02
674 3434 4.140924 ACCCCTCATCCTTTTTCTCAACTT 60.141 41.667 0.00 0.00 0.00 2.66
676 3436 5.305386 CCCCTCATCCTTTTTCTCAACTTTT 59.695 40.000 0.00 0.00 0.00 2.27
684 3444 7.768240 TCCTTTTTCTCAACTTTTAGTCCAAC 58.232 34.615 0.00 0.00 0.00 3.77
685 3445 6.978659 CCTTTTTCTCAACTTTTAGTCCAACC 59.021 38.462 0.00 0.00 0.00 3.77
701 3461 1.821136 CAACCTGCTCCCATCTTTTCC 59.179 52.381 0.00 0.00 0.00 3.13
703 3463 1.642762 ACCTGCTCCCATCTTTTCCAT 59.357 47.619 0.00 0.00 0.00 3.41
774 3534 5.008316 GGCTGGATGTTACGTATAAAAAGGG 59.992 44.000 0.00 0.00 0.00 3.95
775 3535 5.008316 GCTGGATGTTACGTATAAAAAGGGG 59.992 44.000 0.00 0.00 0.00 4.79
776 3536 6.310764 TGGATGTTACGTATAAAAAGGGGA 57.689 37.500 0.00 0.00 0.00 4.81
777 3537 6.350906 TGGATGTTACGTATAAAAAGGGGAG 58.649 40.000 0.00 0.00 0.00 4.30
778 3538 6.070078 TGGATGTTACGTATAAAAAGGGGAGT 60.070 38.462 0.00 0.00 0.00 3.85
779 3539 6.259387 GGATGTTACGTATAAAAAGGGGAGTG 59.741 42.308 0.00 0.00 0.00 3.51
780 3540 4.937015 TGTTACGTATAAAAAGGGGAGTGC 59.063 41.667 0.00 0.00 0.00 4.40
781 3541 2.995283 ACGTATAAAAAGGGGAGTGCC 58.005 47.619 0.00 0.00 0.00 5.01
782 3542 2.574824 ACGTATAAAAAGGGGAGTGCCT 59.425 45.455 0.00 0.00 0.00 4.75
783 3543 3.776417 ACGTATAAAAAGGGGAGTGCCTA 59.224 43.478 0.00 0.00 0.00 3.93
784 3544 4.141779 ACGTATAAAAAGGGGAGTGCCTAG 60.142 45.833 0.00 0.00 0.00 3.02
785 3545 4.100498 CGTATAAAAAGGGGAGTGCCTAGA 59.900 45.833 0.00 0.00 0.00 2.43
786 3546 5.395990 CGTATAAAAAGGGGAGTGCCTAGAA 60.396 44.000 0.00 0.00 0.00 2.10
787 3547 2.881111 AAAAGGGGAGTGCCTAGAAC 57.119 50.000 0.00 0.00 0.00 3.01
788 3548 2.046280 AAAGGGGAGTGCCTAGAACT 57.954 50.000 0.00 0.00 0.00 3.01
789 3549 1.574263 AAGGGGAGTGCCTAGAACTC 58.426 55.000 14.10 14.10 42.79 3.01
790 3550 0.413832 AGGGGAGTGCCTAGAACTCA 59.586 55.000 20.54 0.39 44.86 3.41
791 3551 1.008938 AGGGGAGTGCCTAGAACTCAT 59.991 52.381 20.54 8.60 44.86 2.90
792 3552 1.840635 GGGGAGTGCCTAGAACTCATT 59.159 52.381 20.54 0.25 44.86 2.57
793 3553 2.239907 GGGGAGTGCCTAGAACTCATTT 59.760 50.000 20.54 0.00 44.86 2.32
794 3554 3.454812 GGGGAGTGCCTAGAACTCATTTA 59.545 47.826 20.54 0.00 44.86 1.40
795 3555 4.443598 GGGGAGTGCCTAGAACTCATTTAG 60.444 50.000 20.54 0.00 44.86 1.85
796 3556 4.406003 GGGAGTGCCTAGAACTCATTTAGA 59.594 45.833 20.54 0.00 44.86 2.10
797 3557 5.071115 GGGAGTGCCTAGAACTCATTTAGAT 59.929 44.000 20.54 0.00 44.86 1.98
798 3558 5.988561 GGAGTGCCTAGAACTCATTTAGATG 59.011 44.000 20.54 0.00 44.86 2.90
799 3559 6.183360 GGAGTGCCTAGAACTCATTTAGATGA 60.183 42.308 20.54 0.00 44.86 2.92
830 3590 8.887036 AATTTGGTCTTATTCACCTTGAAAAC 57.113 30.769 0.00 0.00 40.12 2.43
831 3591 7.411486 TTTGGTCTTATTCACCTTGAAAACA 57.589 32.000 0.00 0.00 40.12 2.83
832 3592 7.411486 TTGGTCTTATTCACCTTGAAAACAA 57.589 32.000 0.00 0.00 40.12 2.83
833 3593 7.411486 TGGTCTTATTCACCTTGAAAACAAA 57.589 32.000 0.00 0.00 40.12 2.83
834 3594 7.841956 TGGTCTTATTCACCTTGAAAACAAAA 58.158 30.769 0.00 0.00 40.12 2.44
835 3595 8.314751 TGGTCTTATTCACCTTGAAAACAAAAA 58.685 29.630 0.00 0.00 40.12 1.94
836 3596 8.600625 GGTCTTATTCACCTTGAAAACAAAAAC 58.399 33.333 0.00 0.00 40.12 2.43
837 3597 9.145865 GTCTTATTCACCTTGAAAACAAAAACA 57.854 29.630 0.00 0.00 40.12 2.83
838 3598 9.364989 TCTTATTCACCTTGAAAACAAAAACAG 57.635 29.630 0.00 0.00 40.12 3.16
839 3599 9.364989 CTTATTCACCTTGAAAACAAAAACAGA 57.635 29.630 0.00 0.00 40.12 3.41
840 3600 9.883142 TTATTCACCTTGAAAACAAAAACAGAT 57.117 25.926 0.00 0.00 40.12 2.90
842 3602 8.696410 TTCACCTTGAAAACAAAAACAGATAC 57.304 30.769 0.00 0.00 32.71 2.24
843 3603 7.831753 TCACCTTGAAAACAAAAACAGATACA 58.168 30.769 0.00 0.00 0.00 2.29
844 3604 8.307483 TCACCTTGAAAACAAAAACAGATACAA 58.693 29.630 0.00 0.00 0.00 2.41
845 3605 8.379902 CACCTTGAAAACAAAAACAGATACAAC 58.620 33.333 0.00 0.00 0.00 3.32
846 3606 7.547722 ACCTTGAAAACAAAAACAGATACAACC 59.452 33.333 0.00 0.00 0.00 3.77
847 3607 7.011016 CCTTGAAAACAAAAACAGATACAACCC 59.989 37.037 0.00 0.00 0.00 4.11
848 3608 6.936279 TGAAAACAAAAACAGATACAACCCA 58.064 32.000 0.00 0.00 0.00 4.51
849 3609 6.814146 TGAAAACAAAAACAGATACAACCCAC 59.186 34.615 0.00 0.00 0.00 4.61
850 3610 4.561735 ACAAAAACAGATACAACCCACG 57.438 40.909 0.00 0.00 0.00 4.94
851 3611 3.949113 ACAAAAACAGATACAACCCACGT 59.051 39.130 0.00 0.00 0.00 4.49
852 3612 4.035909 ACAAAAACAGATACAACCCACGTC 59.964 41.667 0.00 0.00 0.00 4.34
853 3613 3.478857 AAACAGATACAACCCACGTCA 57.521 42.857 0.00 0.00 0.00 4.35
854 3614 2.743636 ACAGATACAACCCACGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
855 3615 1.337823 ACAGATACAACCCACGTCAGC 60.338 52.381 0.00 0.00 0.00 4.26
856 3616 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
857 3617 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
858 3618 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
859 3619 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
860 3620 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
861 3621 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
862 3622 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
863 3623 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
864 3624 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
865 3625 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
866 3626 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
867 3627 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
868 3628 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
869 3629 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
870 3630 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
871 3631 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
872 3632 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
873 3633 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
874 3634 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
875 3635 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
876 3636 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
877 3637 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
878 3638 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
879 3639 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
880 3640 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
881 3641 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
882 3642 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
883 3643 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
884 3644 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
885 3645 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
886 3646 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
887 3647 6.373495 GCATCTTATAGCATCACATCCAATGA 59.627 38.462 0.00 0.00 0.00 2.57
888 3648 7.625817 GCATCTTATAGCATCACATCCAATGAC 60.626 40.741 0.00 0.00 0.00 3.06
889 3649 7.071069 TCTTATAGCATCACATCCAATGACT 57.929 36.000 0.00 0.00 0.00 3.41
890 3650 8.193953 TCTTATAGCATCACATCCAATGACTA 57.806 34.615 0.00 0.00 0.00 2.59
891 3651 8.819845 TCTTATAGCATCACATCCAATGACTAT 58.180 33.333 0.00 0.00 32.32 2.12
895 3655 9.797642 ATAGCATCACATCCAATGACTATAAAA 57.202 29.630 0.00 0.00 0.00 1.52
896 3656 8.162878 AGCATCACATCCAATGACTATAAAAG 57.837 34.615 0.00 0.00 0.00 2.27
897 3657 7.994911 AGCATCACATCCAATGACTATAAAAGA 59.005 33.333 0.00 0.00 0.00 2.52
898 3658 8.790718 GCATCACATCCAATGACTATAAAAGAT 58.209 33.333 0.00 0.00 0.00 2.40
901 3661 9.904198 TCACATCCAATGACTATAAAAGATGAA 57.096 29.630 0.00 0.00 35.13 2.57
911 3671 9.958180 TGACTATAAAAGATGAATGAGACCAAA 57.042 29.630 0.00 0.00 0.00 3.28
913 3673 9.965902 ACTATAAAAGATGAATGAGACCAAACT 57.034 29.630 0.00 0.00 0.00 2.66
920 3680 9.995003 AAGATGAATGAGACCAAACTATATCTC 57.005 33.333 0.00 0.00 38.46 2.75
951 3711 9.944376 AGATGAGTTCTAGCAAAACTGTATAAA 57.056 29.630 0.32 0.00 37.10 1.40
955 3715 9.827411 GAGTTCTAGCAAAACTGTATAAAAAGG 57.173 33.333 0.32 0.00 37.10 3.11
997 3762 3.057876 TCAACAAATCGCATTACCACCAC 60.058 43.478 0.00 0.00 0.00 4.16
998 3763 1.466950 ACAAATCGCATTACCACCACG 59.533 47.619 0.00 0.00 0.00 4.94
999 3764 0.450184 AAATCGCATTACCACCACGC 59.550 50.000 0.00 0.00 0.00 5.34
1000 3765 0.675208 AATCGCATTACCACCACGCA 60.675 50.000 0.00 0.00 0.00 5.24
1001 3766 1.366111 ATCGCATTACCACCACGCAC 61.366 55.000 0.00 0.00 0.00 5.34
1002 3767 2.032634 CGCATTACCACCACGCACT 61.033 57.895 0.00 0.00 0.00 4.40
1085 3854 2.271800 AGATCGAATCCAACACGAAGC 58.728 47.619 0.00 0.00 39.38 3.86
1087 3856 1.428448 TCGAATCCAACACGAAGCAG 58.572 50.000 0.00 0.00 33.20 4.24
1106 3878 1.443802 GTGCAGAGTTAAGGGAGCAC 58.556 55.000 0.00 0.00 44.31 4.40
2054 6672 4.554723 GCATGCTGGTACGATATTCAAACC 60.555 45.833 11.37 0.00 0.00 3.27
2127 8168 0.107945 GCACCTGGAAGAAGAGCGAT 60.108 55.000 0.00 0.00 34.07 4.58
2190 8235 1.156645 GCAGCTGCTAATGGACTCCG 61.157 60.000 31.33 0.00 38.21 4.63
2240 8285 3.181470 GCTTCTCCGGATTCTTAGAGCTT 60.181 47.826 3.57 0.00 0.00 3.74
2292 8341 2.902608 TCCGGGTAAGCATCCTGATAT 58.097 47.619 0.00 0.00 33.49 1.63
2293 8342 4.055710 TCCGGGTAAGCATCCTGATATA 57.944 45.455 0.00 0.00 33.49 0.86
2294 8343 3.767673 TCCGGGTAAGCATCCTGATATAC 59.232 47.826 0.00 0.00 33.49 1.47
2295 8344 3.513912 CCGGGTAAGCATCCTGATATACA 59.486 47.826 0.00 0.00 33.49 2.29
2296 8345 4.162320 CCGGGTAAGCATCCTGATATACAT 59.838 45.833 0.00 0.00 33.49 2.29
2297 8346 5.362717 CCGGGTAAGCATCCTGATATACATA 59.637 44.000 0.00 0.00 33.49 2.29
2493 8542 1.228800 AACTTCCGAGGGACGAGGT 60.229 57.895 0.00 0.00 45.77 3.85
2573 8630 3.685435 GTCACCCCGGAAGACGTA 58.315 61.111 0.73 0.00 42.24 3.57
2586 8643 3.073101 ACGTAGGAACTCCGGGGC 61.073 66.667 0.00 0.00 43.84 5.80
2752 8810 4.721776 ACCAAGTACTACCACCATGATCAT 59.278 41.667 1.18 1.18 0.00 2.45
2786 8869 9.494271 TCAACTAGAGCTAATTAATTAGGCATG 57.506 33.333 28.27 16.68 40.01 4.06
2832 8916 5.127682 CCTATCAATAAGCCACAAGCCTTTT 59.872 40.000 0.00 0.00 45.47 2.27
2833 8917 4.953940 TCAATAAGCCACAAGCCTTTTT 57.046 36.364 0.00 0.00 45.47 1.94
2917 9714 7.755373 TCACTAAAAGTCTCACGTCAGATATTG 59.245 37.037 0.00 0.00 0.00 1.90
2972 9769 1.336755 ACCACCTGCACGAATTTTGAC 59.663 47.619 0.00 0.00 0.00 3.18
2990 9787 2.667318 CGCAAGTTCATCGCCACGT 61.667 57.895 0.00 0.00 0.00 4.49
2996 9793 2.873525 TTCATCGCCACGTCACCCA 61.874 57.895 0.00 0.00 0.00 4.51
2999 9796 1.745115 ATCGCCACGTCACCCATTG 60.745 57.895 0.00 0.00 0.00 2.82
3030 9827 4.796231 CGGACGGGCGGTGAGAAG 62.796 72.222 1.11 0.00 0.00 2.85
3040 9837 1.818131 GCGGTGAGAAGGACCCTTTTT 60.818 52.381 2.43 0.00 36.26 1.94
3041 9838 2.152016 CGGTGAGAAGGACCCTTTTTC 58.848 52.381 2.43 5.29 36.26 2.29
3042 9839 2.224548 CGGTGAGAAGGACCCTTTTTCT 60.225 50.000 2.43 0.00 36.26 2.52
3043 9840 3.413327 GGTGAGAAGGACCCTTTTTCTC 58.587 50.000 12.26 12.26 44.39 2.87
3045 9842 2.077627 GAGAAGGACCCTTTTTCTCGC 58.922 52.381 2.43 0.00 37.97 5.03
3046 9843 1.420138 AGAAGGACCCTTTTTCTCGCA 59.580 47.619 2.43 0.00 36.26 5.10
3047 9844 1.535896 GAAGGACCCTTTTTCTCGCAC 59.464 52.381 2.43 0.00 36.26 5.34
3048 9845 0.765510 AGGACCCTTTTTCTCGCACT 59.234 50.000 0.00 0.00 0.00 4.40
3049 9846 0.875059 GGACCCTTTTTCTCGCACTG 59.125 55.000 0.00 0.00 0.00 3.66
3050 9847 0.875059 GACCCTTTTTCTCGCACTGG 59.125 55.000 0.00 0.00 0.00 4.00
3051 9848 0.472471 ACCCTTTTTCTCGCACTGGA 59.528 50.000 0.00 0.00 0.00 3.86
3052 9849 1.073923 ACCCTTTTTCTCGCACTGGAT 59.926 47.619 0.00 0.00 0.00 3.41
3064 9861 1.990060 ACTGGATGGGGTGAGACGG 60.990 63.158 0.00 0.00 0.00 4.79
3118 9915 2.568956 CTCATTCTCTTCCCCACTCACA 59.431 50.000 0.00 0.00 0.00 3.58
3144 9951 2.017049 CATCACTTTCGATTCCACCCC 58.983 52.381 0.00 0.00 0.00 4.95
3145 9952 0.036765 TCACTTTCGATTCCACCCCG 60.037 55.000 0.00 0.00 0.00 5.73
3146 9953 0.036765 CACTTTCGATTCCACCCCGA 60.037 55.000 0.00 0.00 0.00 5.14
3148 9955 0.743345 CTTTCGATTCCACCCCGACC 60.743 60.000 0.00 0.00 31.60 4.79
3149 9956 1.481901 TTTCGATTCCACCCCGACCA 61.482 55.000 0.00 0.00 31.60 4.02
3181 9988 2.044551 TGTGTGTGGTGGCTTGCA 60.045 55.556 0.00 0.00 0.00 4.08
3182 9989 2.412937 GTGTGTGGTGGCTTGCAC 59.587 61.111 0.00 0.00 0.00 4.57
3183 9990 3.208383 TGTGTGGTGGCTTGCACG 61.208 61.111 0.00 0.00 34.86 5.34
3184 9991 3.209097 GTGTGGTGGCTTGCACGT 61.209 61.111 0.00 0.00 0.00 4.49
3185 9992 3.208383 TGTGGTGGCTTGCACGTG 61.208 61.111 12.28 12.28 0.00 4.49
3186 9993 3.964875 GTGGTGGCTTGCACGTGG 61.965 66.667 18.88 1.27 0.00 4.94
3187 9994 4.497984 TGGTGGCTTGCACGTGGT 62.498 61.111 18.88 0.00 0.00 4.16
3188 9995 3.660111 GGTGGCTTGCACGTGGTC 61.660 66.667 18.88 2.44 0.00 4.02
3209 10016 4.241555 GGATCTCGGCGGCATGGT 62.242 66.667 10.53 0.00 0.00 3.55
3210 10017 2.734591 GATCTCGGCGGCATGGTA 59.265 61.111 10.53 0.00 0.00 3.25
3312 10121 4.284860 CGGATCTCGGCGGCATGA 62.285 66.667 10.53 6.57 34.75 3.07
3326 10135 2.288666 GGCATGATGACGGAGCTAAAA 58.711 47.619 0.00 0.00 0.00 1.52
3348 10157 5.522315 ACTGATAGATCTCGGATAAGGGA 57.478 43.478 0.00 0.00 0.00 4.20
3419 10228 0.321671 CAGGTTCAGGCTCTCCGAAA 59.678 55.000 0.00 0.00 37.47 3.46
3421 10230 1.420138 AGGTTCAGGCTCTCCGAAAAA 59.580 47.619 0.00 0.00 37.47 1.94
3453 10262 8.983307 TCCTACGTTTTGTTTGTTTTTATTGT 57.017 26.923 0.00 0.00 0.00 2.71
3541 10350 8.639761 CCTATCCCTCGGTTTATATAGGTATTG 58.360 40.741 0.00 0.00 34.01 1.90
3606 10415 5.456173 GGAAATAGTGTCTTCGACGAATCTC 59.544 44.000 11.30 8.45 34.95 2.75
3618 10427 3.246619 GACGAATCTCGCTTCTTGAAGT 58.753 45.455 11.41 0.00 45.12 3.01
3640 10449 1.597663 CACGACAAGTTTTCGGAAGCT 59.402 47.619 15.31 0.00 40.92 3.74
3703 10512 2.758327 CCGACATGGGGTCCTCGA 60.758 66.667 0.00 0.00 43.95 4.04
3773 10582 0.254178 CCAGGACACCATTAGCAGCT 59.746 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.237285 ATTGACCAACCAGCGTCTGC 61.237 55.000 1.84 0.00 43.24 4.26
15 16 0.798776 GATTGACCAACCAGCGTCTG 59.201 55.000 0.52 0.52 0.00 3.51
16 17 0.396435 TGATTGACCAACCAGCGTCT 59.604 50.000 0.00 0.00 0.00 4.18
17 18 0.517316 GTGATTGACCAACCAGCGTC 59.483 55.000 0.00 0.00 0.00 5.19
18 19 0.889186 GGTGATTGACCAACCAGCGT 60.889 55.000 0.00 0.00 45.34 5.07
19 20 1.875963 GGTGATTGACCAACCAGCG 59.124 57.895 0.00 0.00 45.34 5.18
20 21 1.586154 CCGGTGATTGACCAACCAGC 61.586 60.000 0.00 0.00 46.55 4.85
21 22 0.036164 TCCGGTGATTGACCAACCAG 59.964 55.000 0.00 0.00 46.55 4.00
22 23 0.695924 ATCCGGTGATTGACCAACCA 59.304 50.000 0.00 0.00 46.55 3.67
23 24 1.379527 GATCCGGTGATTGACCAACC 58.620 55.000 0.00 0.00 46.55 3.77
24 25 1.339631 TGGATCCGGTGATTGACCAAC 60.340 52.381 7.39 0.00 46.55 3.77
25 26 0.988063 TGGATCCGGTGATTGACCAA 59.012 50.000 7.39 0.00 46.55 3.67
26 27 0.988063 TTGGATCCGGTGATTGACCA 59.012 50.000 7.39 0.00 46.55 4.02
27 28 2.017049 CTTTGGATCCGGTGATTGACC 58.983 52.381 7.39 0.00 42.07 4.02
28 29 1.401905 GCTTTGGATCCGGTGATTGAC 59.598 52.381 7.39 0.00 0.00 3.18
29 30 1.681780 GGCTTTGGATCCGGTGATTGA 60.682 52.381 7.39 0.00 0.00 2.57
30 31 0.740737 GGCTTTGGATCCGGTGATTG 59.259 55.000 7.39 0.00 0.00 2.67
31 32 0.748005 CGGCTTTGGATCCGGTGATT 60.748 55.000 7.39 0.00 41.82 2.57
32 33 1.153168 CGGCTTTGGATCCGGTGAT 60.153 57.895 7.39 0.00 41.82 3.06
33 34 2.267642 CGGCTTTGGATCCGGTGA 59.732 61.111 7.39 0.00 41.82 4.02
38 39 2.361104 TGCCACGGCTTTGGATCC 60.361 61.111 9.92 4.20 39.24 3.36
39 40 3.056313 GCTGCCACGGCTTTGGATC 62.056 63.158 9.92 0.00 39.24 3.36
40 41 3.064324 GCTGCCACGGCTTTGGAT 61.064 61.111 9.92 0.00 39.24 3.41
41 42 3.866379 ATGCTGCCACGGCTTTGGA 62.866 57.895 9.92 1.53 39.24 3.53
42 43 3.346631 GATGCTGCCACGGCTTTGG 62.347 63.158 9.92 0.10 42.51 3.28
43 44 2.180017 GATGCTGCCACGGCTTTG 59.820 61.111 9.92 1.05 42.51 2.77
44 45 2.034687 AGATGCTGCCACGGCTTT 59.965 55.556 9.92 0.00 42.51 3.51
45 46 2.749044 CAGATGCTGCCACGGCTT 60.749 61.111 9.92 0.00 42.51 4.35
76 77 4.191015 GCCCTGGACGAATCCCCC 62.191 72.222 0.00 0.00 45.59 5.40
77 78 4.547367 CGCCCTGGACGAATCCCC 62.547 72.222 0.00 0.00 45.59 4.81
78 79 3.447025 CTCGCCCTGGACGAATCCC 62.447 68.421 6.55 0.00 45.59 3.85
79 80 2.107141 CTCGCCCTGGACGAATCC 59.893 66.667 6.55 0.00 46.48 3.01
80 81 2.586357 GCTCGCCCTGGACGAATC 60.586 66.667 6.55 0.00 39.39 2.52
81 82 4.514577 CGCTCGCCCTGGACGAAT 62.515 66.667 6.55 0.00 39.39 3.34
98 99 3.414700 CGACCAACCAGCGTCTGC 61.415 66.667 1.84 0.00 43.24 4.26
99 100 2.738521 CCGACCAACCAGCGTCTG 60.739 66.667 0.52 0.52 0.00 3.51
100 101 2.915659 TCCGACCAACCAGCGTCT 60.916 61.111 0.00 0.00 0.00 4.18
101 102 2.737376 GTCCGACCAACCAGCGTC 60.737 66.667 0.00 0.00 0.00 5.19
102 103 3.542676 TGTCCGACCAACCAGCGT 61.543 61.111 0.00 0.00 0.00 5.07
103 104 3.041940 GTGTCCGACCAACCAGCG 61.042 66.667 0.00 0.00 0.00 5.18
104 105 2.668550 GGTGTCCGACCAACCAGC 60.669 66.667 3.65 0.00 45.34 4.85
115 116 1.749258 GGCTTTGGATCCGGTGTCC 60.749 63.158 18.08 18.08 36.26 4.02
116 117 2.106683 CGGCTTTGGATCCGGTGTC 61.107 63.158 7.39 0.57 41.82 3.67
117 118 2.046314 CGGCTTTGGATCCGGTGT 60.046 61.111 7.39 0.00 41.82 4.16
118 119 1.815421 CTCGGCTTTGGATCCGGTG 60.815 63.158 7.39 0.09 45.31 4.94
119 120 2.584608 CTCGGCTTTGGATCCGGT 59.415 61.111 7.39 0.00 45.31 5.28
120 121 2.203070 CCTCGGCTTTGGATCCGG 60.203 66.667 7.39 0.00 45.31 5.14
121 122 2.897350 GCCTCGGCTTTGGATCCG 60.897 66.667 7.39 0.00 46.52 4.18
122 123 1.821332 CTGCCTCGGCTTTGGATCC 60.821 63.158 4.20 4.20 42.51 3.36
123 124 2.476320 GCTGCCTCGGCTTTGGATC 61.476 63.158 9.65 0.00 42.51 3.36
124 125 2.439156 GCTGCCTCGGCTTTGGAT 60.439 61.111 9.65 0.00 42.51 3.41
125 126 2.769652 AATGCTGCCTCGGCTTTGGA 62.770 55.000 9.65 1.60 42.51 3.53
126 127 1.880819 AAATGCTGCCTCGGCTTTGG 61.881 55.000 9.65 0.00 42.51 3.28
127 128 0.734942 CAAATGCTGCCTCGGCTTTG 60.735 55.000 9.65 7.60 42.51 2.77
128 129 1.181098 ACAAATGCTGCCTCGGCTTT 61.181 50.000 9.65 0.00 42.51 3.51
129 130 0.322456 TACAAATGCTGCCTCGGCTT 60.322 50.000 9.65 0.00 42.51 4.35
130 131 0.745845 CTACAAATGCTGCCTCGGCT 60.746 55.000 9.65 0.00 42.51 5.52
131 132 1.723870 CTACAAATGCTGCCTCGGC 59.276 57.895 0.00 0.00 42.35 5.54
132 133 1.723870 GCTACAAATGCTGCCTCGG 59.276 57.895 0.00 0.00 0.00 4.63
133 134 1.349627 CGCTACAAATGCTGCCTCG 59.650 57.895 0.00 0.00 0.00 4.63
134 135 1.718757 CCCGCTACAAATGCTGCCTC 61.719 60.000 0.00 0.00 0.00 4.70
135 136 1.750399 CCCGCTACAAATGCTGCCT 60.750 57.895 0.00 0.00 0.00 4.75
136 137 2.800736 CCCGCTACAAATGCTGCC 59.199 61.111 0.00 0.00 0.00 4.85
137 138 2.102946 GCCCGCTACAAATGCTGC 59.897 61.111 0.00 0.00 0.00 5.25
138 139 2.774799 GGGCCCGCTACAAATGCTG 61.775 63.158 5.69 0.00 0.00 4.41
139 140 2.440247 GGGCCCGCTACAAATGCT 60.440 61.111 5.69 0.00 0.00 3.79
140 141 3.887868 CGGGCCCGCTACAAATGC 61.888 66.667 34.96 0.00 0.00 3.56
141 142 2.437716 ACGGGCCCGCTACAAATG 60.438 61.111 43.58 15.44 44.19 2.32
142 143 2.437716 CACGGGCCCGCTACAAAT 60.438 61.111 43.58 20.64 44.19 2.32
143 144 4.708386 CCACGGGCCCGCTACAAA 62.708 66.667 43.58 0.00 44.19 2.83
162 163 2.120737 ATTACTTATCCGGCGGGCCC 62.121 60.000 27.98 13.57 0.00 5.80
163 164 0.250597 AATTACTTATCCGGCGGGCC 60.251 55.000 27.98 0.00 0.00 5.80
164 165 1.265905 CAAATTACTTATCCGGCGGGC 59.734 52.381 27.98 0.00 0.00 6.13
165 166 1.265905 GCAAATTACTTATCCGGCGGG 59.734 52.381 27.98 12.61 0.00 6.13
166 167 1.944024 TGCAAATTACTTATCCGGCGG 59.056 47.619 22.51 22.51 0.00 6.13
167 168 3.896648 ATGCAAATTACTTATCCGGCG 57.103 42.857 0.00 0.00 0.00 6.46
226 227 2.383442 TCTAGTCTGGCTACCATCCC 57.617 55.000 0.00 0.00 30.82 3.85
227 228 4.156477 AGAATCTAGTCTGGCTACCATCC 58.844 47.826 0.00 0.00 30.82 3.51
234 235 5.753721 AAGTTCAAGAATCTAGTCTGGCT 57.246 39.130 0.00 0.00 0.00 4.75
262 263 7.147976 GTGCAGTTGTTCTTTCTATGGAATTT 58.852 34.615 0.00 0.00 0.00 1.82
289 290 4.466726 AGAAGCGGTCTACTCCAAAACTAT 59.533 41.667 0.00 0.00 33.56 2.12
290 291 3.830755 AGAAGCGGTCTACTCCAAAACTA 59.169 43.478 0.00 0.00 33.56 2.24
291 292 2.633481 AGAAGCGGTCTACTCCAAAACT 59.367 45.455 0.00 0.00 33.56 2.66
292 293 2.994578 GAGAAGCGGTCTACTCCAAAAC 59.005 50.000 0.00 0.00 36.41 2.43
293 294 2.028385 GGAGAAGCGGTCTACTCCAAAA 60.028 50.000 21.81 0.00 45.53 2.44
294 295 1.549170 GGAGAAGCGGTCTACTCCAAA 59.451 52.381 21.81 0.00 45.53 3.28
295 296 1.183549 GGAGAAGCGGTCTACTCCAA 58.816 55.000 21.81 0.00 45.53 3.53
296 297 2.883572 GGAGAAGCGGTCTACTCCA 58.116 57.895 21.81 0.00 45.53 3.86
297 298 1.404843 ATGGAGAAGCGGTCTACTCC 58.595 55.000 20.70 20.70 46.16 3.85
298 299 3.131400 AGAAATGGAGAAGCGGTCTACTC 59.869 47.826 4.54 7.54 38.17 2.59
299 300 3.100671 AGAAATGGAGAAGCGGTCTACT 58.899 45.455 4.54 0.00 38.17 2.57
300 301 3.528597 AGAAATGGAGAAGCGGTCTAC 57.471 47.619 0.00 0.00 36.41 2.59
301 302 4.553330 AAAGAAATGGAGAAGCGGTCTA 57.447 40.909 0.00 0.00 36.41 2.59
302 303 3.425162 AAAGAAATGGAGAAGCGGTCT 57.575 42.857 0.00 0.00 40.25 3.85
303 304 3.753797 AGAAAAGAAATGGAGAAGCGGTC 59.246 43.478 0.00 0.00 0.00 4.79
304 305 3.756117 AGAAAAGAAATGGAGAAGCGGT 58.244 40.909 0.00 0.00 0.00 5.68
305 306 4.773323 AAGAAAAGAAATGGAGAAGCGG 57.227 40.909 0.00 0.00 0.00 5.52
306 307 6.442112 AGAAAAGAAAAGAAATGGAGAAGCG 58.558 36.000 0.00 0.00 0.00 4.68
307 308 8.546244 CAAAGAAAAGAAAAGAAATGGAGAAGC 58.454 33.333 0.00 0.00 0.00 3.86
308 309 9.038803 CCAAAGAAAAGAAAAGAAATGGAGAAG 57.961 33.333 0.00 0.00 0.00 2.85
309 310 7.986889 CCCAAAGAAAAGAAAAGAAATGGAGAA 59.013 33.333 0.00 0.00 0.00 2.87
310 311 7.344352 TCCCAAAGAAAAGAAAAGAAATGGAGA 59.656 33.333 0.00 0.00 0.00 3.71
311 312 7.500141 TCCCAAAGAAAAGAAAAGAAATGGAG 58.500 34.615 0.00 0.00 0.00 3.86
312 313 7.344352 TCTCCCAAAGAAAAGAAAAGAAATGGA 59.656 33.333 0.00 0.00 0.00 3.41
313 314 7.500141 TCTCCCAAAGAAAAGAAAAGAAATGG 58.500 34.615 0.00 0.00 0.00 3.16
314 315 8.947055 TTCTCCCAAAGAAAAGAAAAGAAATG 57.053 30.769 0.00 0.00 41.10 2.32
330 331 9.920946 AGCTTTCTATATTGTATTTCTCCCAAA 57.079 29.630 0.00 0.00 0.00 3.28
331 332 9.561069 GAGCTTTCTATATTGTATTTCTCCCAA 57.439 33.333 0.00 0.00 0.00 4.12
332 333 8.157476 GGAGCTTTCTATATTGTATTTCTCCCA 58.843 37.037 0.00 0.00 31.56 4.37
333 334 8.379331 AGGAGCTTTCTATATTGTATTTCTCCC 58.621 37.037 0.00 0.00 36.72 4.30
334 335 9.213799 CAGGAGCTTTCTATATTGTATTTCTCC 57.786 37.037 0.00 0.00 36.41 3.71
335 336 8.716909 GCAGGAGCTTTCTATATTGTATTTCTC 58.283 37.037 0.00 0.00 37.91 2.87
336 337 7.663493 GGCAGGAGCTTTCTATATTGTATTTCT 59.337 37.037 0.00 0.00 41.70 2.52
337 338 7.360438 CGGCAGGAGCTTTCTATATTGTATTTC 60.360 40.741 0.00 0.00 41.70 2.17
338 339 6.428159 CGGCAGGAGCTTTCTATATTGTATTT 59.572 38.462 0.00 0.00 41.70 1.40
339 340 5.934625 CGGCAGGAGCTTTCTATATTGTATT 59.065 40.000 0.00 0.00 41.70 1.89
340 341 5.012148 ACGGCAGGAGCTTTCTATATTGTAT 59.988 40.000 0.00 0.00 41.70 2.29
341 342 4.344102 ACGGCAGGAGCTTTCTATATTGTA 59.656 41.667 0.00 0.00 41.70 2.41
342 343 3.134804 ACGGCAGGAGCTTTCTATATTGT 59.865 43.478 0.00 0.00 41.70 2.71
343 344 3.733337 ACGGCAGGAGCTTTCTATATTG 58.267 45.455 0.00 0.00 41.70 1.90
344 345 4.344102 TGTACGGCAGGAGCTTTCTATATT 59.656 41.667 0.00 0.00 41.70 1.28
345 346 3.895656 TGTACGGCAGGAGCTTTCTATAT 59.104 43.478 0.00 0.00 41.70 0.86
346 347 3.293337 TGTACGGCAGGAGCTTTCTATA 58.707 45.455 0.00 0.00 41.70 1.31
347 348 2.108168 TGTACGGCAGGAGCTTTCTAT 58.892 47.619 0.00 0.00 41.70 1.98
348 349 1.552578 TGTACGGCAGGAGCTTTCTA 58.447 50.000 0.00 0.00 41.70 2.10
349 350 0.685097 TTGTACGGCAGGAGCTTTCT 59.315 50.000 0.00 0.00 41.70 2.52
350 351 1.519408 TTTGTACGGCAGGAGCTTTC 58.481 50.000 0.00 0.00 41.70 2.62
351 352 1.812571 CATTTGTACGGCAGGAGCTTT 59.187 47.619 0.00 0.00 41.70 3.51
352 353 1.271379 ACATTTGTACGGCAGGAGCTT 60.271 47.619 0.00 0.00 41.70 3.74
353 354 0.324943 ACATTTGTACGGCAGGAGCT 59.675 50.000 0.00 0.00 41.70 4.09
354 355 2.018542 TACATTTGTACGGCAGGAGC 57.981 50.000 0.00 0.00 41.10 4.70
355 356 2.351726 GCTTACATTTGTACGGCAGGAG 59.648 50.000 8.88 0.00 33.03 3.69
356 357 2.289756 TGCTTACATTTGTACGGCAGGA 60.290 45.455 11.21 0.00 35.83 3.86
357 358 2.080693 TGCTTACATTTGTACGGCAGG 58.919 47.619 11.21 0.00 35.83 4.85
358 359 2.159572 GGTGCTTACATTTGTACGGCAG 60.160 50.000 14.03 1.84 38.87 4.85
359 360 1.807742 GGTGCTTACATTTGTACGGCA 59.192 47.619 11.21 11.21 37.25 5.69
360 361 1.807742 TGGTGCTTACATTTGTACGGC 59.192 47.619 7.50 7.50 33.24 5.68
361 362 3.331150 TCTGGTGCTTACATTTGTACGG 58.669 45.455 0.00 0.00 0.00 4.02
362 363 3.994392 ACTCTGGTGCTTACATTTGTACG 59.006 43.478 0.00 0.00 0.00 3.67
363 364 5.468746 TCAACTCTGGTGCTTACATTTGTAC 59.531 40.000 0.00 0.00 0.00 2.90
364 365 5.616270 TCAACTCTGGTGCTTACATTTGTA 58.384 37.500 0.00 0.00 0.00 2.41
365 366 4.460263 TCAACTCTGGTGCTTACATTTGT 58.540 39.130 0.00 0.00 0.00 2.83
366 367 5.437289 TTCAACTCTGGTGCTTACATTTG 57.563 39.130 0.00 0.00 0.00 2.32
367 368 6.491403 AGATTTCAACTCTGGTGCTTACATTT 59.509 34.615 0.00 0.00 0.00 2.32
368 369 6.006449 AGATTTCAACTCTGGTGCTTACATT 58.994 36.000 0.00 0.00 0.00 2.71
369 370 5.564550 AGATTTCAACTCTGGTGCTTACAT 58.435 37.500 0.00 0.00 0.00 2.29
370 371 4.973168 AGATTTCAACTCTGGTGCTTACA 58.027 39.130 0.00 0.00 0.00 2.41
371 372 6.166982 ACTAGATTTCAACTCTGGTGCTTAC 58.833 40.000 0.00 0.00 33.72 2.34
372 373 6.360370 ACTAGATTTCAACTCTGGTGCTTA 57.640 37.500 0.00 0.00 33.72 3.09
373 374 5.234466 ACTAGATTTCAACTCTGGTGCTT 57.766 39.130 0.00 0.00 33.72 3.91
374 375 4.899352 ACTAGATTTCAACTCTGGTGCT 57.101 40.909 0.00 0.00 33.72 4.40
375 376 5.967088 TCTACTAGATTTCAACTCTGGTGC 58.033 41.667 4.24 0.00 35.52 5.01
376 377 6.983307 CCATCTACTAGATTTCAACTCTGGTG 59.017 42.308 4.24 0.00 35.52 4.17
377 378 6.897966 TCCATCTACTAGATTTCAACTCTGGT 59.102 38.462 0.00 0.00 38.00 4.00
378 379 7.069331 ACTCCATCTACTAGATTTCAACTCTGG 59.931 40.741 0.00 0.00 31.32 3.86
379 380 8.006298 ACTCCATCTACTAGATTTCAACTCTG 57.994 38.462 0.00 0.00 31.32 3.35
380 381 8.474025 CAACTCCATCTACTAGATTTCAACTCT 58.526 37.037 0.00 0.00 31.32 3.24
381 382 8.254508 ACAACTCCATCTACTAGATTTCAACTC 58.745 37.037 0.00 0.00 31.32 3.01
382 383 8.037758 CACAACTCCATCTACTAGATTTCAACT 58.962 37.037 0.00 0.00 31.32 3.16
383 384 7.201565 GCACAACTCCATCTACTAGATTTCAAC 60.202 40.741 0.00 0.00 31.32 3.18
384 385 6.818644 GCACAACTCCATCTACTAGATTTCAA 59.181 38.462 0.00 0.00 31.32 2.69
388 682 5.395768 GGTGCACAACTCCATCTACTAGATT 60.396 44.000 20.43 0.00 31.32 2.40
411 705 0.388649 GTGTCGTGCTGGAGTAGTGG 60.389 60.000 0.00 0.00 0.00 4.00
412 706 0.388649 GGTGTCGTGCTGGAGTAGTG 60.389 60.000 0.00 0.00 0.00 2.74
413 707 0.826256 TGGTGTCGTGCTGGAGTAGT 60.826 55.000 0.00 0.00 0.00 2.73
414 708 0.317160 TTGGTGTCGTGCTGGAGTAG 59.683 55.000 0.00 0.00 0.00 2.57
415 709 0.317160 CTTGGTGTCGTGCTGGAGTA 59.683 55.000 0.00 0.00 0.00 2.59
417 711 0.036952 ATCTTGGTGTCGTGCTGGAG 60.037 55.000 0.00 0.00 0.00 3.86
418 712 0.320683 CATCTTGGTGTCGTGCTGGA 60.321 55.000 0.00 0.00 0.00 3.86
419 713 0.603707 ACATCTTGGTGTCGTGCTGG 60.604 55.000 0.00 0.00 0.00 4.85
421 715 0.603707 CCACATCTTGGTGTCGTGCT 60.604 55.000 0.00 0.00 41.10 4.40
422 716 1.868997 CCACATCTTGGTGTCGTGC 59.131 57.895 0.00 0.00 41.10 5.34
434 728 3.441500 AGAAAAGGGGAGAACCACATC 57.558 47.619 0.00 0.00 43.15 3.06
435 729 3.655777 TGTAGAAAAGGGGAGAACCACAT 59.344 43.478 0.00 0.00 43.15 3.21
437 731 3.782656 TGTAGAAAAGGGGAGAACCAC 57.217 47.619 0.00 0.00 42.91 4.16
439 733 5.773176 TGAAAATGTAGAAAAGGGGAGAACC 59.227 40.000 0.00 0.00 39.11 3.62
440 734 6.490381 ACTGAAAATGTAGAAAAGGGGAGAAC 59.510 38.462 0.00 0.00 0.00 3.01
441 735 6.610830 ACTGAAAATGTAGAAAAGGGGAGAA 58.389 36.000 0.00 0.00 0.00 2.87
442 736 6.200878 ACTGAAAATGTAGAAAAGGGGAGA 57.799 37.500 0.00 0.00 0.00 3.71
443 737 8.049721 AGATACTGAAAATGTAGAAAAGGGGAG 58.950 37.037 0.00 0.00 0.00 4.30
482 1309 7.497925 AAGTTCAGAATTAGAGGAAACACAC 57.502 36.000 0.00 0.00 0.00 3.82
483 1310 8.208224 TGTAAGTTCAGAATTAGAGGAAACACA 58.792 33.333 0.00 0.00 0.00 3.72
484 1311 8.496751 GTGTAAGTTCAGAATTAGAGGAAACAC 58.503 37.037 0.00 0.00 0.00 3.32
486 1313 7.660208 TGGTGTAAGTTCAGAATTAGAGGAAAC 59.340 37.037 0.00 0.00 0.00 2.78
487 1314 7.660208 GTGGTGTAAGTTCAGAATTAGAGGAAA 59.340 37.037 0.00 0.00 0.00 3.13
488 1315 7.159372 GTGGTGTAAGTTCAGAATTAGAGGAA 58.841 38.462 0.00 0.00 0.00 3.36
489 1316 6.269077 TGTGGTGTAAGTTCAGAATTAGAGGA 59.731 38.462 0.00 0.00 0.00 3.71
490 1317 6.464222 TGTGGTGTAAGTTCAGAATTAGAGG 58.536 40.000 0.00 0.00 0.00 3.69
491 1318 7.155328 ACTGTGGTGTAAGTTCAGAATTAGAG 58.845 38.462 0.00 0.00 0.00 2.43
492 1319 7.062749 ACTGTGGTGTAAGTTCAGAATTAGA 57.937 36.000 0.00 0.00 0.00 2.10
493 1320 7.730364 AACTGTGGTGTAAGTTCAGAATTAG 57.270 36.000 0.00 0.00 30.87 1.73
502 1329 5.099042 ACTTCAGAACTGTGGTGTAAGTT 57.901 39.130 1.73 0.00 39.31 2.66
503 1330 4.406003 AGACTTCAGAACTGTGGTGTAAGT 59.594 41.667 1.73 3.47 0.00 2.24
504 1331 4.747108 CAGACTTCAGAACTGTGGTGTAAG 59.253 45.833 1.73 0.55 0.00 2.34
505 1332 4.404394 TCAGACTTCAGAACTGTGGTGTAA 59.596 41.667 1.73 0.00 33.93 2.41
506 1333 3.958147 TCAGACTTCAGAACTGTGGTGTA 59.042 43.478 1.73 0.00 33.93 2.90
507 1334 2.766263 TCAGACTTCAGAACTGTGGTGT 59.234 45.455 1.73 0.00 33.93 4.16
508 1335 3.459232 TCAGACTTCAGAACTGTGGTG 57.541 47.619 1.73 0.00 33.93 4.17
509 1336 3.432326 GGTTCAGACTTCAGAACTGTGGT 60.432 47.826 12.58 2.70 40.70 4.16
510 1337 3.134458 GGTTCAGACTTCAGAACTGTGG 58.866 50.000 12.58 0.00 40.70 4.17
511 1338 3.806521 CAGGTTCAGACTTCAGAACTGTG 59.193 47.826 12.58 8.09 40.70 3.66
512 1339 3.706594 TCAGGTTCAGACTTCAGAACTGT 59.293 43.478 12.58 1.05 40.70 3.55
513 1340 4.327982 TCAGGTTCAGACTTCAGAACTG 57.672 45.455 12.58 9.57 40.70 3.16
514 1341 4.020662 GGATCAGGTTCAGACTTCAGAACT 60.021 45.833 12.58 0.00 40.70 3.01
515 1342 4.020662 AGGATCAGGTTCAGACTTCAGAAC 60.021 45.833 6.07 6.07 40.33 3.01
516 1343 4.020751 CAGGATCAGGTTCAGACTTCAGAA 60.021 45.833 0.00 0.00 0.00 3.02
517 1344 3.513119 CAGGATCAGGTTCAGACTTCAGA 59.487 47.826 0.00 0.00 0.00 3.27
518 1345 3.513119 TCAGGATCAGGTTCAGACTTCAG 59.487 47.826 0.00 0.00 0.00 3.02
548 1375 8.260818 CACTTCCTGGTTCAGAATAGAATTAGA 58.739 37.037 0.00 0.00 32.44 2.10
566 1393 2.022195 CCCATCAATGCTCACTTCCTG 58.978 52.381 0.00 0.00 0.00 3.86
568 1395 2.295885 CTCCCATCAATGCTCACTTCC 58.704 52.381 0.00 0.00 0.00 3.46
569 1396 2.996631 ACTCCCATCAATGCTCACTTC 58.003 47.619 0.00 0.00 0.00 3.01
570 1397 3.521126 AGTACTCCCATCAATGCTCACTT 59.479 43.478 0.00 0.00 0.00 3.16
588 1415 1.071699 TCAGAACAGCCCCACAAGTAC 59.928 52.381 0.00 0.00 0.00 2.73
607 1434 8.960591 TCCACTTGAATCTTATTTCCAGATTTC 58.039 33.333 0.00 0.00 40.43 2.17
625 1452 3.071457 TGCTCTGTTCAATCTCCACTTGA 59.929 43.478 0.00 0.00 0.00 3.02
661 3421 7.702348 CAGGTTGGACTAAAAGTTGAGAAAAAG 59.298 37.037 0.00 0.00 0.00 2.27
671 3431 2.224793 GGGAGCAGGTTGGACTAAAAGT 60.225 50.000 0.00 0.00 0.00 2.66
674 3434 1.440618 TGGGAGCAGGTTGGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
676 3436 1.204146 GATGGGAGCAGGTTGGACTA 58.796 55.000 0.00 0.00 0.00 2.59
684 3444 2.449137 ATGGAAAAGATGGGAGCAGG 57.551 50.000 0.00 0.00 0.00 4.85
685 3445 3.359033 TGAATGGAAAAGATGGGAGCAG 58.641 45.455 0.00 0.00 0.00 4.24
701 3461 5.862323 CACCTTCTCTTGCAAGATTTGAATG 59.138 40.000 28.57 23.65 33.93 2.67
703 3463 5.132502 TCACCTTCTCTTGCAAGATTTGAA 58.867 37.500 28.57 24.44 33.93 2.69
774 3534 5.599999 TCTAAATGAGTTCTAGGCACTCC 57.400 43.478 16.20 4.17 40.12 3.85
775 3535 6.810911 TCATCTAAATGAGTTCTAGGCACTC 58.189 40.000 13.40 13.40 37.09 3.51
776 3536 6.798427 TCATCTAAATGAGTTCTAGGCACT 57.202 37.500 0.00 0.00 38.74 4.40
804 3564 9.974980 GTTTTCAAGGTGAATAAGACCAAATTA 57.025 29.630 0.00 0.00 36.11 1.40
805 3565 8.482128 TGTTTTCAAGGTGAATAAGACCAAATT 58.518 29.630 0.00 0.00 36.11 1.82
806 3566 8.017418 TGTTTTCAAGGTGAATAAGACCAAAT 57.983 30.769 0.00 0.00 36.11 2.32
807 3567 7.411486 TGTTTTCAAGGTGAATAAGACCAAA 57.589 32.000 0.00 0.00 36.11 3.28
808 3568 7.411486 TTGTTTTCAAGGTGAATAAGACCAA 57.589 32.000 0.00 0.00 36.11 3.67
809 3569 7.411486 TTTGTTTTCAAGGTGAATAAGACCA 57.589 32.000 0.00 0.00 41.09 4.02
810 3570 8.600625 GTTTTTGTTTTCAAGGTGAATAAGACC 58.399 33.333 0.00 0.00 41.09 3.85
811 3571 9.145865 TGTTTTTGTTTTCAAGGTGAATAAGAC 57.854 29.630 0.00 0.00 41.09 3.01
812 3572 9.364989 CTGTTTTTGTTTTCAAGGTGAATAAGA 57.635 29.630 0.00 0.00 41.09 2.10
813 3573 9.364989 TCTGTTTTTGTTTTCAAGGTGAATAAG 57.635 29.630 0.00 0.00 41.09 1.73
814 3574 9.883142 ATCTGTTTTTGTTTTCAAGGTGAATAA 57.117 25.926 0.00 0.00 41.09 1.40
816 3576 9.313118 GTATCTGTTTTTGTTTTCAAGGTGAAT 57.687 29.630 0.00 0.00 41.09 2.57
817 3577 8.307483 TGTATCTGTTTTTGTTTTCAAGGTGAA 58.693 29.630 0.00 0.00 41.09 3.18
818 3578 7.831753 TGTATCTGTTTTTGTTTTCAAGGTGA 58.168 30.769 0.00 0.00 41.09 4.02
819 3579 8.379902 GTTGTATCTGTTTTTGTTTTCAAGGTG 58.620 33.333 0.00 0.00 41.09 4.00
820 3580 7.547722 GGTTGTATCTGTTTTTGTTTTCAAGGT 59.452 33.333 0.00 0.00 41.09 3.50
821 3581 7.011016 GGGTTGTATCTGTTTTTGTTTTCAAGG 59.989 37.037 0.00 0.00 41.09 3.61
822 3582 7.547370 TGGGTTGTATCTGTTTTTGTTTTCAAG 59.453 33.333 0.00 0.00 41.09 3.02
823 3583 7.332182 GTGGGTTGTATCTGTTTTTGTTTTCAA 59.668 33.333 0.00 0.00 38.10 2.69
824 3584 6.814146 GTGGGTTGTATCTGTTTTTGTTTTCA 59.186 34.615 0.00 0.00 0.00 2.69
825 3585 6.020201 CGTGGGTTGTATCTGTTTTTGTTTTC 60.020 38.462 0.00 0.00 0.00 2.29
826 3586 5.808030 CGTGGGTTGTATCTGTTTTTGTTTT 59.192 36.000 0.00 0.00 0.00 2.43
827 3587 5.105675 ACGTGGGTTGTATCTGTTTTTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
828 3588 4.399934 ACGTGGGTTGTATCTGTTTTTGTT 59.600 37.500 0.00 0.00 0.00 2.83
829 3589 3.949113 ACGTGGGTTGTATCTGTTTTTGT 59.051 39.130 0.00 0.00 0.00 2.83
830 3590 4.035792 TGACGTGGGTTGTATCTGTTTTTG 59.964 41.667 0.00 0.00 0.00 2.44
831 3591 4.200874 TGACGTGGGTTGTATCTGTTTTT 58.799 39.130 0.00 0.00 0.00 1.94
832 3592 3.811083 TGACGTGGGTTGTATCTGTTTT 58.189 40.909 0.00 0.00 0.00 2.43
833 3593 3.399330 CTGACGTGGGTTGTATCTGTTT 58.601 45.455 0.00 0.00 0.00 2.83
834 3594 2.870435 GCTGACGTGGGTTGTATCTGTT 60.870 50.000 0.00 0.00 0.00 3.16
835 3595 1.337823 GCTGACGTGGGTTGTATCTGT 60.338 52.381 0.00 0.00 0.00 3.41
836 3596 1.337728 TGCTGACGTGGGTTGTATCTG 60.338 52.381 0.00 0.00 0.00 2.90
837 3597 0.973632 TGCTGACGTGGGTTGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
838 3598 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
839 3599 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
840 3600 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
841 3601 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
842 3602 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
843 3603 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
844 3604 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
845 3605 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
846 3606 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
847 3607 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
848 3608 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
849 3609 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
850 3610 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
851 3611 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
852 3612 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
853 3613 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
854 3614 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
855 3615 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
856 3616 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
857 3617 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
858 3618 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
859 3619 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
860 3620 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
861 3621 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
862 3622 6.373495 TCATTGGATGTGATGCTATAAGATGC 59.627 38.462 0.00 0.00 0.00 3.91
863 3623 7.606839 AGTCATTGGATGTGATGCTATAAGATG 59.393 37.037 0.00 0.00 0.00 2.90
864 3624 7.687388 AGTCATTGGATGTGATGCTATAAGAT 58.313 34.615 0.00 0.00 0.00 2.40
865 3625 7.071069 AGTCATTGGATGTGATGCTATAAGA 57.929 36.000 0.00 0.00 0.00 2.10
869 3629 9.797642 TTTTATAGTCATTGGATGTGATGCTAT 57.202 29.630 0.00 0.00 32.56 2.97
870 3630 9.276590 CTTTTATAGTCATTGGATGTGATGCTA 57.723 33.333 0.00 0.00 0.00 3.49
871 3631 7.994911 TCTTTTATAGTCATTGGATGTGATGCT 59.005 33.333 0.00 0.00 0.00 3.79
872 3632 8.158169 TCTTTTATAGTCATTGGATGTGATGC 57.842 34.615 0.00 0.00 0.00 3.91
875 3635 9.904198 TTCATCTTTTATAGTCATTGGATGTGA 57.096 29.630 0.00 0.00 33.39 3.58
885 3645 9.958180 TTTGGTCTCATTCATCTTTTATAGTCA 57.042 29.630 0.00 0.00 0.00 3.41
887 3647 9.965902 AGTTTGGTCTCATTCATCTTTTATAGT 57.034 29.630 0.00 0.00 0.00 2.12
894 3654 9.995003 GAGATATAGTTTGGTCTCATTCATCTT 57.005 33.333 0.00 0.00 37.60 2.40
895 3655 9.152327 TGAGATATAGTTTGGTCTCATTCATCT 57.848 33.333 0.16 0.00 41.40 2.90
925 3685 9.944376 TTTATACAGTTTTGCTAGAACTCATCT 57.056 29.630 0.00 0.00 42.48 2.90
929 3689 9.827411 CCTTTTTATACAGTTTTGCTAGAACTC 57.173 33.333 0.00 0.00 35.26 3.01
930 3690 8.297426 GCCTTTTTATACAGTTTTGCTAGAACT 58.703 33.333 0.00 0.00 37.82 3.01
931 3691 7.541091 GGCCTTTTTATACAGTTTTGCTAGAAC 59.459 37.037 0.00 0.00 0.00 3.01
932 3692 7.450323 AGGCCTTTTTATACAGTTTTGCTAGAA 59.550 33.333 0.00 0.00 0.00 2.10
933 3693 6.946009 AGGCCTTTTTATACAGTTTTGCTAGA 59.054 34.615 0.00 0.00 0.00 2.43
934 3694 7.158099 AGGCCTTTTTATACAGTTTTGCTAG 57.842 36.000 0.00 0.00 0.00 3.42
935 3695 7.338449 CCTAGGCCTTTTTATACAGTTTTGCTA 59.662 37.037 12.58 0.00 0.00 3.49
936 3696 6.152831 CCTAGGCCTTTTTATACAGTTTTGCT 59.847 38.462 12.58 0.00 0.00 3.91
937 3697 6.330278 CCTAGGCCTTTTTATACAGTTTTGC 58.670 40.000 12.58 0.00 0.00 3.68
938 3698 6.330278 GCCTAGGCCTTTTTATACAGTTTTG 58.670 40.000 24.19 0.00 34.56 2.44
939 3699 6.525578 GCCTAGGCCTTTTTATACAGTTTT 57.474 37.500 24.19 0.00 34.56 2.43
955 3715 3.205536 GAGCGCTTTGGCCTAGGC 61.206 66.667 26.55 26.55 41.06 3.93
998 3763 0.736325 ACTGGAATACGTGCGAGTGC 60.736 55.000 0.00 0.00 43.20 4.40
999 3764 0.992072 CACTGGAATACGTGCGAGTG 59.008 55.000 12.74 12.74 0.00 3.51
1000 3765 0.736325 GCACTGGAATACGTGCGAGT 60.736 55.000 0.00 0.00 45.74 4.18
1001 3766 1.999051 GCACTGGAATACGTGCGAG 59.001 57.895 0.00 0.00 45.74 5.03
1002 3767 4.178861 GCACTGGAATACGTGCGA 57.821 55.556 0.00 0.00 45.74 5.10
1085 3854 1.002430 TGCTCCCTTAACTCTGCACTG 59.998 52.381 0.00 0.00 0.00 3.66
1087 3856 1.443802 GTGCTCCCTTAACTCTGCAC 58.556 55.000 0.00 0.00 42.69 4.57
1106 3878 2.801631 GCCGGTCCTCCTCAGATGG 61.802 68.421 1.90 0.00 0.00 3.51
1944 6562 6.349973 ACTCGTGAATTACTTCGTCGTATA 57.650 37.500 8.93 0.00 34.90 1.47
1978 6596 0.462759 CGACCTGATCCAAGAAGCCC 60.463 60.000 0.00 0.00 0.00 5.19
2054 6672 3.140325 TGGTTTCCTAGGCAAGAACAG 57.860 47.619 2.96 0.00 0.00 3.16
2190 8235 2.202756 GTCGTCGCCCATGGAGAC 60.203 66.667 22.60 22.60 46.46 3.36
2292 8341 6.041523 TCAGGTTCGAATGGATCATGTATGTA 59.958 38.462 0.00 0.00 30.30 2.29
2293 8342 5.059161 CAGGTTCGAATGGATCATGTATGT 58.941 41.667 0.00 0.00 0.00 2.29
2294 8343 5.178252 GTCAGGTTCGAATGGATCATGTATG 59.822 44.000 0.00 0.00 30.30 2.39
2295 8344 5.070981 AGTCAGGTTCGAATGGATCATGTAT 59.929 40.000 0.00 0.00 30.30 2.29
2296 8345 4.405680 AGTCAGGTTCGAATGGATCATGTA 59.594 41.667 0.00 0.00 30.30 2.29
2297 8346 3.198635 AGTCAGGTTCGAATGGATCATGT 59.801 43.478 0.00 0.00 30.30 3.21
2573 8630 4.974438 TGGTGCCCCGGAGTTCCT 62.974 66.667 0.73 0.00 0.00 3.36
2586 8643 1.910722 CTCTCCCCTGGTCATGGTG 59.089 63.158 0.00 0.00 0.00 4.17
2786 8869 4.573201 GGTTTGGGTGCTTTTTCTTTAACC 59.427 41.667 0.00 0.00 0.00 2.85
2917 9714 4.808649 GTTCGTGACGGGATCCTC 57.191 61.111 12.58 2.52 0.00 3.71
2972 9769 2.096406 CGTGGCGATGAACTTGCG 59.904 61.111 0.00 0.00 34.78 4.85
2984 9781 4.101790 CGCAATGGGTGACGTGGC 62.102 66.667 0.00 0.00 0.00 5.01
2986 9783 1.206578 GTTCGCAATGGGTGACGTG 59.793 57.895 0.00 0.00 35.30 4.49
2987 9784 1.964373 GGTTCGCAATGGGTGACGT 60.964 57.895 0.00 0.00 35.30 4.34
2990 9787 1.669760 GACGGTTCGCAATGGGTGA 60.670 57.895 0.00 0.00 0.00 4.02
3013 9810 4.796231 CTTCTCACCGCCCGTCCG 62.796 72.222 0.00 0.00 0.00 4.79
3023 9820 3.067833 CGAGAAAAAGGGTCCTTCTCAC 58.932 50.000 15.34 7.91 43.43 3.51
3028 9825 1.143073 AGTGCGAGAAAAAGGGTCCTT 59.857 47.619 0.00 0.00 37.98 3.36
3029 9826 0.765510 AGTGCGAGAAAAAGGGTCCT 59.234 50.000 0.00 0.00 0.00 3.85
3030 9827 0.875059 CAGTGCGAGAAAAAGGGTCC 59.125 55.000 0.00 0.00 0.00 4.46
3040 9837 2.284625 ACCCCATCCAGTGCGAGA 60.285 61.111 0.00 0.00 0.00 4.04
3041 9838 2.124983 CACCCCATCCAGTGCGAG 60.125 66.667 0.00 0.00 0.00 5.03
3042 9839 2.606213 TCACCCCATCCAGTGCGA 60.606 61.111 0.00 0.00 33.90 5.10
3043 9840 2.124983 CTCACCCCATCCAGTGCG 60.125 66.667 0.00 0.00 33.90 5.34
3045 9842 1.219124 CGTCTCACCCCATCCAGTG 59.781 63.158 0.00 0.00 35.24 3.66
3046 9843 1.990060 CCGTCTCACCCCATCCAGT 60.990 63.158 0.00 0.00 0.00 4.00
3047 9844 2.903357 CCGTCTCACCCCATCCAG 59.097 66.667 0.00 0.00 0.00 3.86
3048 9845 3.399181 GCCGTCTCACCCCATCCA 61.399 66.667 0.00 0.00 0.00 3.41
3049 9846 4.176752 GGCCGTCTCACCCCATCC 62.177 72.222 0.00 0.00 0.00 3.51
3050 9847 4.176752 GGGCCGTCTCACCCCATC 62.177 72.222 0.00 0.00 40.56 3.51
3064 9861 2.501316 AGAAATGCATAACAAAGGGGGC 59.499 45.455 0.00 0.00 0.00 5.80
3118 9915 2.749621 GGAATCGAAAGTGATGGTTGCT 59.250 45.455 0.00 0.00 0.00 3.91
3145 9952 2.582498 CCTCGTCGGCGATTGGTC 60.582 66.667 14.65 0.00 46.80 4.02
3146 9953 4.143333 CCCTCGTCGGCGATTGGT 62.143 66.667 14.65 0.00 46.80 3.67
3148 9955 2.885644 CACCCTCGTCGGCGATTG 60.886 66.667 14.65 9.91 46.80 2.67
3149 9956 3.379445 ACACCCTCGTCGGCGATT 61.379 61.111 14.65 0.00 46.80 3.34
3153 9960 4.295119 ACACACACCCTCGTCGGC 62.295 66.667 0.00 0.00 0.00 5.54
3158 9965 2.280797 CCACCACACACACCCTCG 60.281 66.667 0.00 0.00 0.00 4.63
3164 9971 2.044551 TGCAAGCCACCACACACA 60.045 55.556 0.00 0.00 0.00 3.72
3167 9974 3.209097 ACGTGCAAGCCACCACAC 61.209 61.111 0.00 0.00 41.53 3.82
3209 10016 2.290916 CCATCGCTTTCTCGAGCTAGTA 59.709 50.000 7.81 1.06 42.14 1.82
3210 10017 1.066303 CCATCGCTTTCTCGAGCTAGT 59.934 52.381 7.81 0.00 42.14 2.57
3267 10076 2.743752 CGCTGCAACACCCTCGATG 61.744 63.158 0.00 0.00 0.00 3.84
3312 10121 5.854010 TCTATCAGTTTTAGCTCCGTCAT 57.146 39.130 0.00 0.00 0.00 3.06
3326 10135 5.522315 TCCCTTATCCGAGATCTATCAGT 57.478 43.478 0.00 0.00 0.00 3.41
3348 10157 5.067936 CACATCTAGACACTTACTTCGGGAT 59.932 44.000 0.00 0.00 0.00 3.85
3356 10165 7.544622 TGTTACCATCACATCTAGACACTTAC 58.455 38.462 0.00 0.00 0.00 2.34
3419 10228 9.589111 AACAAACAAAACGTAGGATATTGTTTT 57.411 25.926 18.53 12.24 46.34 2.43
3421 10230 9.589111 AAAACAAACAAAACGTAGGATATTGTT 57.411 25.926 10.55 10.55 43.78 2.83
3453 10262 2.183679 ACTTTGCACTCCAACCCAAAA 58.816 42.857 0.00 0.00 31.97 2.44
3606 10415 1.858458 TGTCGTGAACTTCAAGAAGCG 59.142 47.619 8.74 5.65 41.99 4.68
3618 10427 2.031191 GCTTCCGAAAACTTGTCGTGAA 59.969 45.455 0.73 3.66 36.77 3.18
3640 10449 2.158559 CCCATGACGTGTGAATGGAAA 58.841 47.619 14.59 0.00 43.00 3.13
3703 10512 4.954118 TGGTGGGCCAGGACGAGT 62.954 66.667 6.40 0.00 40.46 4.18
3726 10535 0.251386 TCTCTCACCAAGTCGCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
3773 10582 1.343465 GACTTGAAGACCGGTTCAGGA 59.657 52.381 21.42 3.44 37.72 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.