Multiple sequence alignment - TraesCS6D01G149100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G149100 chr6D 100.000 7222 0 0 1 7222 122748571 122741350 0.000000e+00 13337.0
1 TraesCS6D01G149100 chr6D 100.000 145 0 0 5188 5332 122743230 122743086 1.190000e-67 268.0
2 TraesCS6D01G149100 chr6D 100.000 145 0 0 5342 5486 122743384 122743240 1.190000e-67 268.0
3 TraesCS6D01G149100 chr6B 93.998 4082 159 36 163 4187 216513893 216509841 0.000000e+00 6102.0
4 TraesCS6D01G149100 chr6B 93.979 1146 27 7 4189 5332 216509796 216508691 0.000000e+00 1696.0
5 TraesCS6D01G149100 chr6B 97.095 895 15 2 5342 6234 216508835 216507950 0.000000e+00 1498.0
6 TraesCS6D01G149100 chr6B 80.000 855 59 34 6288 7113 216507930 216507159 4.960000e-146 529.0
7 TraesCS6D01G149100 chr6B 78.887 521 102 7 1 520 467910758 467911271 5.360000e-91 346.0
8 TraesCS6D01G149100 chr6B 90.741 108 6 2 7115 7222 216506967 216506864 2.720000e-29 141.0
9 TraesCS6D01G149100 chr6B 91.667 96 6 1 1 96 216513986 216513893 1.630000e-26 132.0
10 TraesCS6D01G149100 chr6B 94.545 55 1 2 4186 4239 708379962 708379909 4.640000e-12 84.2
11 TraesCS6D01G149100 chr6A 93.878 3610 106 37 639 4187 162100136 162096581 0.000000e+00 5336.0
12 TraesCS6D01G149100 chr6A 90.313 1693 70 47 5346 7013 162090132 162088509 0.000000e+00 2132.0
13 TraesCS6D01G149100 chr6A 97.919 961 14 4 4241 5196 162096375 162095416 0.000000e+00 1659.0
14 TraesCS6D01G149100 chr6A 89.912 565 53 2 1 565 162100738 162100178 0.000000e+00 725.0
15 TraesCS6D01G149100 chr6A 88.288 222 8 2 7017 7222 162088391 162088172 4.330000e-62 250.0
16 TraesCS6D01G149100 chr6A 98.582 141 2 0 5192 5332 162090132 162089992 4.330000e-62 250.0
17 TraesCS6D01G149100 chr2D 82.262 389 66 2 1 389 553257392 553257007 4.180000e-87 333.0
18 TraesCS6D01G149100 chr2D 77.264 497 89 16 1 490 83811537 83812016 3.320000e-68 270.0
19 TraesCS6D01G149100 chr3B 77.672 421 84 8 76 489 757806567 757806984 1.560000e-61 248.0
20 TraesCS6D01G149100 chr3B 100.000 28 0 0 4021 4048 772285373 772285400 1.300000e-02 52.8
21 TraesCS6D01G149100 chr7D 78.426 343 68 4 71 409 500588800 500588460 1.220000e-52 219.0
22 TraesCS6D01G149100 chr1A 75.488 461 89 18 1 450 518470630 518470183 3.420000e-48 204.0
23 TraesCS6D01G149100 chr1A 88.136 59 6 1 4182 4240 10117171 10117228 1.300000e-07 69.4
24 TraesCS6D01G149100 chr7A 78.799 283 48 9 70 347 155258641 155258366 5.760000e-41 180.0
25 TraesCS6D01G149100 chr7A 100.000 28 0 0 4021 4048 701270755 701270728 1.300000e-02 52.8
26 TraesCS6D01G149100 chr5D 97.959 49 0 1 4189 4237 307362470 307362517 4.640000e-12 84.2
27 TraesCS6D01G149100 chr5D 96.078 51 1 1 4184 4234 469554815 469554766 1.670000e-11 82.4
28 TraesCS6D01G149100 chr5D 91.525 59 3 2 4184 4242 373214614 373214670 6.010000e-11 80.5
29 TraesCS6D01G149100 chr3D 90.476 63 4 2 4170 4232 30294882 30294942 1.670000e-11 82.4
30 TraesCS6D01G149100 chr7B 84.810 79 5 7 4161 4233 688066094 688066017 1.010000e-08 73.1
31 TraesCS6D01G149100 chr2B 86.765 68 6 3 4184 4251 21211527 21211591 1.010000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G149100 chr6D 122741350 122748571 7221 True 13337.000000 13337 100.000000 1 7222 1 chr6D.!!$R1 7221
1 TraesCS6D01G149100 chr6B 216506864 216513986 7122 True 1683.000000 6102 91.246667 1 7222 6 chr6B.!!$R2 7221
2 TraesCS6D01G149100 chr6B 467910758 467911271 513 False 346.000000 346 78.887000 1 520 1 chr6B.!!$F1 519
3 TraesCS6D01G149100 chr6A 162095416 162100738 5322 True 2573.333333 5336 93.903000 1 5196 3 chr6A.!!$R2 5195
4 TraesCS6D01G149100 chr6A 162088172 162090132 1960 True 877.333333 2132 92.394333 5192 7222 3 chr6A.!!$R1 2030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 633 0.038618 TTAGAGTTGCTCTTGCGCGA 60.039 50.000 12.10 0.00 41.50 5.87 F
629 635 0.880278 AGAGTTGCTCTTGCGCGAAA 60.880 50.000 12.10 4.03 37.60 3.46 F
920 956 1.521681 CCTTCCAATCGCCCGAGTC 60.522 63.158 0.00 0.00 0.00 3.36 F
2081 2152 1.153168 GCGGCACCTATGGATGTGT 60.153 57.895 0.00 0.00 34.94 3.72 F
2757 2844 1.334329 GGTTGCGGAGGTTTGTAAACG 60.334 52.381 1.80 0.00 39.77 3.60 F
3864 3952 1.200020 CCTTTCACGGAATGGTTCTGC 59.800 52.381 9.16 0.00 39.72 4.26 F
5351 5646 0.743688 AGCGTGACATTTTTGTGCCA 59.256 45.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1493 0.962356 GCCCACCTGACAACTCATGG 60.962 60.000 0.00 0.00 0.00 3.66 R
1845 1916 1.149987 CCGCGCCTTTACTGTTAACA 58.850 50.000 8.28 8.28 0.00 2.41 R
2564 2647 2.162208 CGACAGTCATTTGTGATTGGGG 59.838 50.000 0.41 0.00 31.01 4.96 R
3709 3797 1.825622 GCCCTAACCTCCAGCATGC 60.826 63.158 10.51 10.51 31.97 4.06 R
4280 4567 2.031870 ACCCTGCCAACAAGAGAAAAC 58.968 47.619 0.00 0.00 0.00 2.43 R
5412 5707 0.608130 AATGTCACGCTAGCTCACCA 59.392 50.000 13.93 4.87 0.00 4.17 R
6269 6568 0.036765 AGGTCGCTCGCATTGGTTAA 60.037 50.000 0.00 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.529833 AGTGAGTGCGAGATGTGGAG 59.470 55.000 0.00 0.00 0.00 3.86
177 178 1.536662 AGCTGGTTCCTCGGGAAGT 60.537 57.895 5.71 0.00 42.88 3.01
202 203 2.870372 GCATTGAAGCGGCGTCTT 59.130 55.556 16.51 12.57 0.00 3.01
368 373 1.613317 GGTTATTTGGTGGGCCAGGC 61.613 60.000 6.40 1.26 46.91 4.85
461 466 1.518056 AACACGTCTAGGCCGTCGAA 61.518 55.000 15.90 0.00 36.17 3.71
480 485 2.238353 CGGACCGATATACGACCGT 58.762 57.895 8.64 0.00 46.56 4.83
512 518 3.380479 AAACAAGTCTGATCCGAACGA 57.620 42.857 0.00 0.00 0.00 3.85
529 535 5.969741 CGAACGATTGCGGATAATTTAAGA 58.030 37.500 0.00 0.00 43.17 2.10
532 538 6.920569 ACGATTGCGGATAATTTAAGAGTT 57.079 33.333 0.00 0.00 43.17 3.01
534 540 6.537301 ACGATTGCGGATAATTTAAGAGTTGA 59.463 34.615 0.00 0.00 43.17 3.18
551 557 3.071479 GTTGACGTTGAAGATGCCCTAA 58.929 45.455 0.00 0.00 0.00 2.69
565 571 7.062749 AGATGCCCTAAAATACGTCATCTAA 57.937 36.000 8.37 0.00 37.85 2.10
566 572 7.155328 AGATGCCCTAAAATACGTCATCTAAG 58.845 38.462 8.37 0.00 37.85 2.18
567 573 6.474140 TGCCCTAAAATACGTCATCTAAGA 57.526 37.500 0.00 0.00 0.00 2.10
569 575 6.929049 TGCCCTAAAATACGTCATCTAAGATG 59.071 38.462 0.00 0.00 0.00 2.90
570 576 6.128526 GCCCTAAAATACGTCATCTAAGATGC 60.129 42.308 0.00 0.00 0.00 3.91
571 577 6.369065 CCCTAAAATACGTCATCTAAGATGCC 59.631 42.308 0.00 0.00 0.00 4.40
572 578 6.369065 CCTAAAATACGTCATCTAAGATGCCC 59.631 42.308 0.00 0.00 0.00 5.36
573 579 5.552870 AAATACGTCATCTAAGATGCCCT 57.447 39.130 0.00 0.00 0.00 5.19
574 580 6.665992 AAATACGTCATCTAAGATGCCCTA 57.334 37.500 0.00 0.00 0.00 3.53
575 581 6.665992 AATACGTCATCTAAGATGCCCTAA 57.334 37.500 0.00 0.00 0.00 2.69
576 582 6.665992 ATACGTCATCTAAGATGCCCTAAA 57.334 37.500 0.00 0.00 0.00 1.85
577 583 5.353394 ACGTCATCTAAGATGCCCTAAAA 57.647 39.130 0.00 0.00 0.00 1.52
578 584 5.930135 ACGTCATCTAAGATGCCCTAAAAT 58.070 37.500 0.00 0.00 0.00 1.82
579 585 7.062749 ACGTCATCTAAGATGCCCTAAAATA 57.937 36.000 0.00 0.00 0.00 1.40
580 586 6.929606 ACGTCATCTAAGATGCCCTAAAATAC 59.070 38.462 0.00 0.00 0.00 1.89
581 587 6.089551 CGTCATCTAAGATGCCCTAAAATACG 59.910 42.308 0.00 0.00 0.00 3.06
582 588 6.929606 GTCATCTAAGATGCCCTAAAATACGT 59.070 38.462 0.00 0.00 0.00 3.57
583 589 8.086522 GTCATCTAAGATGCCCTAAAATACGTA 58.913 37.037 0.00 0.00 0.00 3.57
584 590 8.304596 TCATCTAAGATGCCCTAAAATACGTAG 58.695 37.037 0.08 0.00 0.00 3.51
586 592 7.655490 TCTAAGATGCCCTAAAATACGTAGTC 58.345 38.462 0.08 0.00 43.93 2.59
587 593 6.481434 AAGATGCCCTAAAATACGTAGTCT 57.519 37.500 0.08 0.00 43.93 3.24
588 594 7.592885 AAGATGCCCTAAAATACGTAGTCTA 57.407 36.000 0.08 0.00 43.93 2.59
589 595 6.979465 AGATGCCCTAAAATACGTAGTCTAC 58.021 40.000 0.08 0.00 43.93 2.59
590 596 6.776603 AGATGCCCTAAAATACGTAGTCTACT 59.223 38.462 8.37 0.00 43.93 2.57
591 597 6.382869 TGCCCTAAAATACGTAGTCTACTC 57.617 41.667 8.37 0.00 43.93 2.59
592 598 6.125029 TGCCCTAAAATACGTAGTCTACTCT 58.875 40.000 8.37 0.00 43.93 3.24
593 599 6.039047 TGCCCTAAAATACGTAGTCTACTCTG 59.961 42.308 8.37 0.00 43.93 3.35
594 600 6.261826 GCCCTAAAATACGTAGTCTACTCTGA 59.738 42.308 8.37 0.00 43.93 3.27
614 620 8.932610 ACTCTGAAATACATCATCCATTAGAGT 58.067 33.333 0.00 0.00 0.00 3.24
622 628 5.821470 ACATCATCCATTAGAGTTGCTCTTG 59.179 40.000 3.87 0.00 41.50 3.02
626 632 1.002366 ATTAGAGTTGCTCTTGCGCG 58.998 50.000 0.00 0.00 41.50 6.86
627 633 0.038618 TTAGAGTTGCTCTTGCGCGA 60.039 50.000 12.10 0.00 41.50 5.87
628 634 0.038618 TAGAGTTGCTCTTGCGCGAA 60.039 50.000 12.10 0.00 41.50 4.70
629 635 0.880278 AGAGTTGCTCTTGCGCGAAA 60.880 50.000 12.10 4.03 37.60 3.46
669 685 2.022129 CGTCCAGAACGCAGTCCAC 61.022 63.158 0.00 0.00 45.00 4.02
691 707 9.308000 TCCACATACATTGACTTTTTATTTCCT 57.692 29.630 0.00 0.00 0.00 3.36
913 949 2.115291 GGAGCCACCTTCCAATCGC 61.115 63.158 0.00 0.00 34.74 4.58
919 955 2.291043 ACCTTCCAATCGCCCGAGT 61.291 57.895 0.00 0.00 0.00 4.18
920 956 1.521681 CCTTCCAATCGCCCGAGTC 60.522 63.158 0.00 0.00 0.00 3.36
921 957 1.521681 CTTCCAATCGCCCGAGTCC 60.522 63.158 0.00 0.00 0.00 3.85
922 958 2.925162 CTTCCAATCGCCCGAGTCCC 62.925 65.000 0.00 0.00 0.00 4.46
923 959 3.470888 CCAATCGCCCGAGTCCCT 61.471 66.667 0.00 0.00 0.00 4.20
1066 1102 1.738099 GATCAAGGTGCGTGCGTCT 60.738 57.895 0.00 0.00 0.00 4.18
1095 1159 2.031157 CCCAGTTCTTTTCGCGATTGTT 60.031 45.455 10.88 0.00 0.00 2.83
1178 1242 2.731571 GGTACGGATCTGGCCTGCA 61.732 63.158 3.32 0.00 0.00 4.41
1236 1300 6.491745 TCATTCTTATGGATTCTCGTAGCTCT 59.508 38.462 0.00 0.00 32.40 4.09
1339 1403 3.130693 ACTCCGCGTATTCTTCTAAAGCT 59.869 43.478 4.92 0.00 0.00 3.74
1400 1465 4.096681 TCTGAGCCTCTCTTGGTTAATGA 58.903 43.478 0.00 0.00 0.00 2.57
1428 1493 4.038522 TGCTAGAGGTATGATCTTGTCAGC 59.961 45.833 0.00 0.00 40.92 4.26
1569 1634 2.159282 GGCGCTTTAGCTGTCTAGTGTA 60.159 50.000 7.64 0.00 39.32 2.90
1575 1640 2.195741 AGCTGTCTAGTGTACCGACA 57.804 50.000 0.00 0.00 36.37 4.35
1601 1666 4.024893 GCATGTTCGATGACGTCCAATTAT 60.025 41.667 14.12 0.00 40.69 1.28
1748 1819 2.618241 TCATGCCGTTTGCCATCTTATC 59.382 45.455 0.00 0.00 40.16 1.75
1754 1825 3.535561 CGTTTGCCATCTTATCAGGTCT 58.464 45.455 0.00 0.00 0.00 3.85
1767 1838 2.540383 TCAGGTCTGCAGTCACCTATT 58.460 47.619 22.93 3.34 41.41 1.73
1845 1916 2.487934 GAACTATCTGGACGCATGCAT 58.512 47.619 19.57 0.36 0.00 3.96
1951 2022 2.157668 CACGTGCGCTAAATCTTGAAGT 59.842 45.455 9.73 0.00 0.00 3.01
2006 2077 6.539173 TGTTAGTGTAGTGAAATTGGGATGT 58.461 36.000 0.00 0.00 0.00 3.06
2073 2144 2.166829 TCAATTTGTTGCGGCACCTAT 58.833 42.857 0.05 0.00 0.00 2.57
2081 2152 1.153168 GCGGCACCTATGGATGTGT 60.153 57.895 0.00 0.00 34.94 3.72
2116 2187 5.239306 TGAACAATGTCTGATTCTGACCAAC 59.761 40.000 17.79 7.10 32.56 3.77
2217 2292 6.758254 AGTGAAAATAAGACCAAAACCATGG 58.242 36.000 11.19 11.19 46.38 3.66
2414 2489 6.366340 TGGTCAAATAAACCAACCTTGAGTA 58.634 36.000 0.00 0.00 43.72 2.59
2502 2585 4.646492 GGGCAGAAATCAGTAAATGACCAT 59.354 41.667 0.00 0.00 41.91 3.55
2521 2604 8.553085 TGACCATTTCTATCTCTATCTGGAAA 57.447 34.615 0.00 0.00 0.00 3.13
2564 2647 9.657419 AGATTTTTATGATTTTCATTGGTGGAC 57.343 29.630 0.00 0.00 38.26 4.02
2587 2670 3.120199 CCCAATCACAAATGACTGTCGAC 60.120 47.826 9.11 9.11 37.79 4.20
2597 2680 6.204688 ACAAATGACTGTCGACATGTTATGTT 59.795 34.615 20.40 13.44 45.03 2.71
2757 2844 1.334329 GGTTGCGGAGGTTTGTAAACG 60.334 52.381 1.80 0.00 39.77 3.60
3084 3171 3.806380 ACTAGCATGGCAGAATCTCTTG 58.194 45.455 0.00 0.00 0.00 3.02
3112 3199 6.249260 CGTATACAATTTCAAGCTCTTGTTGC 59.751 38.462 9.20 0.00 41.16 4.17
3340 3427 4.764308 TGCAACTACTTGTTTCCATGCATA 59.236 37.500 0.00 0.00 36.63 3.14
3393 3481 3.895656 AGCTGTTAGTGTTCTAGGTCACA 59.104 43.478 16.26 4.25 37.07 3.58
3864 3952 1.200020 CCTTTCACGGAATGGTTCTGC 59.800 52.381 9.16 0.00 39.72 4.26
3899 3987 9.226345 GAATTACTTATGTTGTTGCTTGCTATC 57.774 33.333 0.00 0.00 0.00 2.08
3914 4002 4.471904 TGCTATCTGTTACCCAAGTCTG 57.528 45.455 0.00 0.00 0.00 3.51
3916 4004 5.020795 TGCTATCTGTTACCCAAGTCTGTA 58.979 41.667 0.00 0.00 0.00 2.74
4004 4094 4.142988 GCTAAATGCTTGTACGTTGCTACA 60.143 41.667 0.00 0.00 38.95 2.74
4131 4223 2.148916 TAGAGTGGTTGACAACTGCG 57.851 50.000 17.52 0.00 0.00 5.18
4178 4270 3.443681 ACCGCCACCAATTTAGATCTTTG 59.556 43.478 0.00 0.00 0.00 2.77
4217 4352 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
4388 4676 7.919621 AGATGCTTACTACTCCGTATTTGTTAC 59.080 37.037 0.00 0.00 0.00 2.50
4442 4730 5.479124 AGTTTTCACCTTCCGTAGTGTAT 57.521 39.130 0.00 0.00 35.45 2.29
4593 4882 9.057089 GTACCTCTTTTATGGGATCAACTAATG 57.943 37.037 0.00 0.00 0.00 1.90
4628 4917 4.081087 GCTAGTTCTGGAGTACCATTTCCA 60.081 45.833 1.95 1.95 45.87 3.53
4741 5030 7.621991 CATAATTTTGGTAAGTGTCGAGCTAG 58.378 38.462 0.00 0.00 0.00 3.42
4915 5207 8.220559 ACTGAGCCAAATGAAGGTACATATTAT 58.779 33.333 0.00 0.00 0.00 1.28
4943 5235 7.013750 AGTCTTCTCAAAATGGTTTTCTTCTCC 59.986 37.037 0.00 0.00 0.00 3.71
5303 5598 4.168760 GCTGTTGTTTGGATTACAGATGC 58.831 43.478 0.00 0.00 40.24 3.91
5304 5599 4.082571 GCTGTTGTTTGGATTACAGATGCT 60.083 41.667 0.00 0.00 40.24 3.79
5305 5600 5.375417 TGTTGTTTGGATTACAGATGCTG 57.625 39.130 0.00 0.00 37.52 4.41
5306 5601 5.069318 TGTTGTTTGGATTACAGATGCTGA 58.931 37.500 0.82 0.00 35.18 4.26
5307 5602 5.181811 TGTTGTTTGGATTACAGATGCTGAG 59.818 40.000 0.82 0.00 35.18 3.35
5308 5603 4.910195 TGTTTGGATTACAGATGCTGAGT 58.090 39.130 0.82 0.00 35.18 3.41
5309 5604 5.316167 TGTTTGGATTACAGATGCTGAGTT 58.684 37.500 0.82 0.00 35.18 3.01
5310 5605 5.412594 TGTTTGGATTACAGATGCTGAGTTC 59.587 40.000 0.82 0.00 35.18 3.01
5311 5606 4.824479 TGGATTACAGATGCTGAGTTCA 57.176 40.909 0.82 0.00 35.18 3.18
5312 5607 5.164620 TGGATTACAGATGCTGAGTTCAA 57.835 39.130 0.82 0.00 35.18 2.69
5313 5608 5.748402 TGGATTACAGATGCTGAGTTCAAT 58.252 37.500 0.82 0.00 35.18 2.57
5314 5609 6.888105 TGGATTACAGATGCTGAGTTCAATA 58.112 36.000 0.82 0.00 35.18 1.90
5315 5610 7.512130 TGGATTACAGATGCTGAGTTCAATAT 58.488 34.615 0.82 0.00 35.18 1.28
5316 5611 7.658982 TGGATTACAGATGCTGAGTTCAATATC 59.341 37.037 0.82 0.00 35.18 1.63
5317 5612 7.658982 GGATTACAGATGCTGAGTTCAATATCA 59.341 37.037 0.82 0.00 35.18 2.15
5318 5613 8.969260 ATTACAGATGCTGAGTTCAATATCAA 57.031 30.769 0.82 0.00 35.18 2.57
5319 5614 6.674694 ACAGATGCTGAGTTCAATATCAAC 57.325 37.500 0.82 0.00 35.18 3.18
5320 5615 6.413052 ACAGATGCTGAGTTCAATATCAACT 58.587 36.000 0.82 0.61 36.77 3.16
5321 5616 6.315642 ACAGATGCTGAGTTCAATATCAACTG 59.684 38.462 0.82 0.00 34.10 3.16
5322 5617 6.315642 CAGATGCTGAGTTCAATATCAACTGT 59.684 38.462 5.03 0.00 34.10 3.55
5323 5618 6.883217 AGATGCTGAGTTCAATATCAACTGTT 59.117 34.615 5.03 0.00 34.10 3.16
5324 5619 6.245115 TGCTGAGTTCAATATCAACTGTTG 57.755 37.500 14.24 14.24 34.10 3.33
5325 5620 5.997129 TGCTGAGTTCAATATCAACTGTTGA 59.003 36.000 23.94 23.94 45.01 3.18
5336 5631 4.456280 TCAACTGTTGATGATCTAGCGT 57.544 40.909 18.69 0.00 34.08 5.07
5337 5632 4.176271 TCAACTGTTGATGATCTAGCGTG 58.824 43.478 18.69 0.00 34.08 5.34
5338 5633 4.082245 TCAACTGTTGATGATCTAGCGTGA 60.082 41.667 18.69 0.00 34.08 4.35
5339 5634 3.775202 ACTGTTGATGATCTAGCGTGAC 58.225 45.455 0.00 0.00 0.00 3.67
5340 5635 3.193479 ACTGTTGATGATCTAGCGTGACA 59.807 43.478 0.00 0.00 0.00 3.58
5341 5636 4.142071 ACTGTTGATGATCTAGCGTGACAT 60.142 41.667 0.00 0.00 0.00 3.06
5342 5637 4.758688 TGTTGATGATCTAGCGTGACATT 58.241 39.130 0.00 0.00 0.00 2.71
5343 5638 5.178061 TGTTGATGATCTAGCGTGACATTT 58.822 37.500 0.00 0.00 0.00 2.32
5344 5639 5.643348 TGTTGATGATCTAGCGTGACATTTT 59.357 36.000 0.00 0.00 0.00 1.82
5345 5640 6.149308 TGTTGATGATCTAGCGTGACATTTTT 59.851 34.615 0.00 0.00 0.00 1.94
5346 5641 6.110543 TGATGATCTAGCGTGACATTTTTG 57.889 37.500 0.00 0.00 0.00 2.44
5347 5642 5.643348 TGATGATCTAGCGTGACATTTTTGT 59.357 36.000 0.00 0.00 0.00 2.83
5348 5643 5.281693 TGATCTAGCGTGACATTTTTGTG 57.718 39.130 0.00 0.00 0.00 3.33
5349 5644 3.536158 TCTAGCGTGACATTTTTGTGC 57.464 42.857 0.00 0.00 0.00 4.57
5350 5645 2.225491 TCTAGCGTGACATTTTTGTGCC 59.775 45.455 0.00 0.00 0.00 5.01
5351 5646 0.743688 AGCGTGACATTTTTGTGCCA 59.256 45.000 0.00 0.00 0.00 4.92
5352 5647 1.340889 AGCGTGACATTTTTGTGCCAT 59.659 42.857 0.00 0.00 0.00 4.40
5353 5648 2.556189 AGCGTGACATTTTTGTGCCATA 59.444 40.909 0.00 0.00 0.00 2.74
5354 5649 3.005261 AGCGTGACATTTTTGTGCCATAA 59.995 39.130 0.00 0.00 0.00 1.90
5355 5650 3.925913 GCGTGACATTTTTGTGCCATAAT 59.074 39.130 0.00 0.00 0.00 1.28
5356 5651 5.098893 GCGTGACATTTTTGTGCCATAATA 58.901 37.500 0.00 0.00 0.00 0.98
5357 5652 5.748152 GCGTGACATTTTTGTGCCATAATAT 59.252 36.000 0.00 0.00 0.00 1.28
5358 5653 6.255453 GCGTGACATTTTTGTGCCATAATATT 59.745 34.615 0.00 0.00 0.00 1.28
5359 5654 7.201513 GCGTGACATTTTTGTGCCATAATATTT 60.202 33.333 0.00 0.00 0.00 1.40
5360 5655 9.295214 CGTGACATTTTTGTGCCATAATATTTA 57.705 29.630 0.00 0.00 0.00 1.40
5385 5680 7.642071 TTTTTCTGATAAAATTGCAGAGTGC 57.358 32.000 0.00 0.00 45.29 4.40
5386 5681 6.579666 TTTCTGATAAAATTGCAGAGTGCT 57.420 33.333 0.00 0.00 45.31 4.40
5387 5682 5.808042 TCTGATAAAATTGCAGAGTGCTC 57.192 39.130 0.00 0.00 45.31 4.26
5388 5683 5.247862 TCTGATAAAATTGCAGAGTGCTCA 58.752 37.500 0.00 0.00 45.31 4.26
5389 5684 5.884232 TCTGATAAAATTGCAGAGTGCTCAT 59.116 36.000 0.00 0.00 45.31 2.90
5390 5685 6.376299 TCTGATAAAATTGCAGAGTGCTCATT 59.624 34.615 0.00 0.00 45.31 2.57
5391 5686 7.553760 TCTGATAAAATTGCAGAGTGCTCATTA 59.446 33.333 0.00 0.00 45.31 1.90
5392 5687 7.475015 TGATAAAATTGCAGAGTGCTCATTAC 58.525 34.615 0.00 0.00 45.31 1.89
5393 5688 5.972107 AAAATTGCAGAGTGCTCATTACT 57.028 34.783 0.00 0.00 45.31 2.24
5394 5689 5.972107 AAATTGCAGAGTGCTCATTACTT 57.028 34.783 0.00 0.00 45.31 2.24
5395 5690 4.959596 ATTGCAGAGTGCTCATTACTTG 57.040 40.909 0.00 0.00 45.31 3.16
5396 5691 3.407424 TGCAGAGTGCTCATTACTTGT 57.593 42.857 0.00 0.00 45.31 3.16
5397 5692 3.069289 TGCAGAGTGCTCATTACTTGTG 58.931 45.455 0.00 0.00 45.31 3.33
5398 5693 3.070018 GCAGAGTGCTCATTACTTGTGT 58.930 45.455 1.82 0.00 40.96 3.72
5399 5694 3.499918 GCAGAGTGCTCATTACTTGTGTT 59.500 43.478 1.82 0.00 40.96 3.32
5400 5695 4.612259 GCAGAGTGCTCATTACTTGTGTTG 60.612 45.833 1.82 0.00 40.96 3.33
5401 5696 3.499918 AGAGTGCTCATTACTTGTGTTGC 59.500 43.478 1.82 0.00 0.00 4.17
5402 5697 3.480470 AGTGCTCATTACTTGTGTTGCT 58.520 40.909 0.00 0.00 0.00 3.91
5403 5698 3.885297 AGTGCTCATTACTTGTGTTGCTT 59.115 39.130 0.00 0.00 0.00 3.91
5404 5699 5.063204 AGTGCTCATTACTTGTGTTGCTTA 58.937 37.500 0.00 0.00 0.00 3.09
5405 5700 5.707298 AGTGCTCATTACTTGTGTTGCTTAT 59.293 36.000 0.00 0.00 0.00 1.73
5406 5701 5.796935 GTGCTCATTACTTGTGTTGCTTATG 59.203 40.000 0.00 0.00 0.00 1.90
5407 5702 5.473162 TGCTCATTACTTGTGTTGCTTATGT 59.527 36.000 0.00 0.00 0.00 2.29
5408 5703 5.796935 GCTCATTACTTGTGTTGCTTATGTG 59.203 40.000 0.00 0.00 0.00 3.21
5409 5704 6.568462 GCTCATTACTTGTGTTGCTTATGTGT 60.568 38.462 0.00 0.00 0.00 3.72
5410 5705 7.270757 TCATTACTTGTGTTGCTTATGTGTT 57.729 32.000 0.00 0.00 0.00 3.32
5411 5706 8.384607 TCATTACTTGTGTTGCTTATGTGTTA 57.615 30.769 0.00 0.00 0.00 2.41
5412 5707 9.008965 TCATTACTTGTGTTGCTTATGTGTTAT 57.991 29.630 0.00 0.00 0.00 1.89
5413 5708 9.064804 CATTACTTGTGTTGCTTATGTGTTATG 57.935 33.333 0.00 0.00 0.00 1.90
5414 5709 6.012658 ACTTGTGTTGCTTATGTGTTATGG 57.987 37.500 0.00 0.00 0.00 2.74
5415 5710 5.534654 ACTTGTGTTGCTTATGTGTTATGGT 59.465 36.000 0.00 0.00 0.00 3.55
5416 5711 5.369685 TGTGTTGCTTATGTGTTATGGTG 57.630 39.130 0.00 0.00 0.00 4.17
5417 5712 5.066593 TGTGTTGCTTATGTGTTATGGTGA 58.933 37.500 0.00 0.00 0.00 4.02
5418 5713 5.181056 TGTGTTGCTTATGTGTTATGGTGAG 59.819 40.000 0.00 0.00 0.00 3.51
5419 5714 4.155826 TGTTGCTTATGTGTTATGGTGAGC 59.844 41.667 0.00 0.00 0.00 4.26
5420 5715 4.220693 TGCTTATGTGTTATGGTGAGCT 57.779 40.909 0.00 0.00 0.00 4.09
5421 5716 5.351948 TGCTTATGTGTTATGGTGAGCTA 57.648 39.130 0.00 0.00 0.00 3.32
5422 5717 5.359756 TGCTTATGTGTTATGGTGAGCTAG 58.640 41.667 0.00 0.00 0.00 3.42
5423 5718 4.212214 GCTTATGTGTTATGGTGAGCTAGC 59.788 45.833 6.62 6.62 0.00 3.42
5424 5719 2.293677 TGTGTTATGGTGAGCTAGCG 57.706 50.000 9.55 0.00 0.00 4.26
5425 5720 1.548719 TGTGTTATGGTGAGCTAGCGT 59.451 47.619 9.55 0.00 0.00 5.07
5426 5721 1.927174 GTGTTATGGTGAGCTAGCGTG 59.073 52.381 9.55 0.00 0.00 5.34
5427 5722 1.822371 TGTTATGGTGAGCTAGCGTGA 59.178 47.619 9.55 0.00 0.00 4.35
5428 5723 2.194271 GTTATGGTGAGCTAGCGTGAC 58.806 52.381 9.55 7.15 0.00 3.67
5429 5724 1.470051 TATGGTGAGCTAGCGTGACA 58.530 50.000 9.55 8.31 0.00 3.58
5430 5725 0.826715 ATGGTGAGCTAGCGTGACAT 59.173 50.000 9.55 10.29 0.00 3.06
5431 5726 0.608130 TGGTGAGCTAGCGTGACATT 59.392 50.000 9.55 0.00 0.00 2.71
5432 5727 1.001974 TGGTGAGCTAGCGTGACATTT 59.998 47.619 9.55 0.00 0.00 2.32
5433 5728 2.076863 GGTGAGCTAGCGTGACATTTT 58.923 47.619 9.55 0.00 0.00 1.82
5434 5729 2.484264 GGTGAGCTAGCGTGACATTTTT 59.516 45.455 9.55 0.00 0.00 1.94
5435 5730 3.482786 GTGAGCTAGCGTGACATTTTTG 58.517 45.455 9.55 0.00 0.00 2.44
5436 5731 2.095768 TGAGCTAGCGTGACATTTTTGC 60.096 45.455 9.55 0.00 0.00 3.68
5437 5732 2.154462 AGCTAGCGTGACATTTTTGCT 58.846 42.857 9.55 0.00 39.59 3.91
5438 5733 2.095567 AGCTAGCGTGACATTTTTGCTG 60.096 45.455 9.55 0.00 37.12 4.41
5439 5734 2.350772 GCTAGCGTGACATTTTTGCTGT 60.351 45.455 0.00 0.00 37.12 4.40
5440 5735 2.869233 AGCGTGACATTTTTGCTGTT 57.131 40.000 0.00 0.00 33.99 3.16
5441 5736 2.462889 AGCGTGACATTTTTGCTGTTG 58.537 42.857 0.00 0.00 33.99 3.33
5442 5737 2.159254 AGCGTGACATTTTTGCTGTTGT 60.159 40.909 0.00 0.00 33.99 3.32
5443 5738 2.602660 GCGTGACATTTTTGCTGTTGTT 59.397 40.909 0.00 0.00 0.00 2.83
5444 5739 3.061965 GCGTGACATTTTTGCTGTTGTTT 59.938 39.130 0.00 0.00 0.00 2.83
5445 5740 4.567127 CGTGACATTTTTGCTGTTGTTTG 58.433 39.130 0.00 0.00 0.00 2.93
5446 5741 4.492247 CGTGACATTTTTGCTGTTGTTTGG 60.492 41.667 0.00 0.00 0.00 3.28
5447 5742 4.629200 GTGACATTTTTGCTGTTGTTTGGA 59.371 37.500 0.00 0.00 0.00 3.53
5448 5743 5.294060 GTGACATTTTTGCTGTTGTTTGGAT 59.706 36.000 0.00 0.00 0.00 3.41
5449 5744 5.879223 TGACATTTTTGCTGTTGTTTGGATT 59.121 32.000 0.00 0.00 0.00 3.01
5450 5745 7.010923 GTGACATTTTTGCTGTTGTTTGGATTA 59.989 33.333 0.00 0.00 0.00 1.75
5451 5746 7.010923 TGACATTTTTGCTGTTGTTTGGATTAC 59.989 33.333 0.00 0.00 0.00 1.89
5452 5747 6.820656 ACATTTTTGCTGTTGTTTGGATTACA 59.179 30.769 0.00 0.00 0.00 2.41
5453 5748 6.900568 TTTTTGCTGTTGTTTGGATTACAG 57.099 33.333 0.00 0.00 40.65 2.74
5454 5749 5.843673 TTTGCTGTTGTTTGGATTACAGA 57.156 34.783 0.00 0.00 40.24 3.41
5455 5750 6.403866 TTTGCTGTTGTTTGGATTACAGAT 57.596 33.333 0.00 0.00 40.24 2.90
5456 5751 5.375417 TGCTGTTGTTTGGATTACAGATG 57.625 39.130 0.00 0.00 40.24 2.90
5574 5869 7.147915 GCTGGAAGGTACAATGATTTTTCCATA 60.148 37.037 11.80 0.00 41.04 2.74
5728 6023 3.969287 TGTGGGAGAGATGAACTTCTG 57.031 47.619 0.00 0.00 0.00 3.02
5803 6100 6.074249 GCATAGATTCTTAACCGCTGAGTAAC 60.074 42.308 0.00 0.00 0.00 2.50
5880 6177 9.855021 AACATTACCTTTGTGTAGCATTTATTC 57.145 29.630 0.00 0.00 0.00 1.75
5882 6179 9.722056 CATTACCTTTGTGTAGCATTTATTCTC 57.278 33.333 0.00 0.00 0.00 2.87
5888 6185 7.834068 TTGTGTAGCATTTATTCTCTCTGAC 57.166 36.000 0.00 0.00 0.00 3.51
5901 6198 6.672266 TTCTCTCTGACATCCAAAGTTAGT 57.328 37.500 0.00 0.00 0.00 2.24
5903 6200 5.775195 TCTCTCTGACATCCAAAGTTAGTGA 59.225 40.000 0.00 0.00 0.00 3.41
5904 6201 5.784177 TCTCTGACATCCAAAGTTAGTGAC 58.216 41.667 0.00 0.00 0.00 3.67
5906 6203 5.924356 TCTGACATCCAAAGTTAGTGACAA 58.076 37.500 0.00 0.00 0.00 3.18
6113 6412 3.887110 TCAAGATGGGATCATTGCATGTC 59.113 43.478 0.00 0.00 32.98 3.06
6280 6579 1.135402 GCACCTTCCTTAACCAATGCG 60.135 52.381 0.00 0.00 0.00 4.73
6284 6583 1.062587 CTTCCTTAACCAATGCGAGCG 59.937 52.381 0.00 0.00 0.00 5.03
6298 6597 0.249073 CGAGCGACCTCCGATGAAAT 60.249 55.000 0.00 0.00 41.76 2.17
6299 6598 1.492720 GAGCGACCTCCGATGAAATC 58.507 55.000 0.00 0.00 41.76 2.17
6300 6599 0.105039 AGCGACCTCCGATGAAATCC 59.895 55.000 0.00 0.00 41.39 3.01
6308 6607 5.203528 ACCTCCGATGAAATCCATGATTTT 58.796 37.500 0.00 0.00 41.56 1.82
6311 6610 6.488006 CCTCCGATGAAATCCATGATTTTACT 59.512 38.462 0.00 0.00 41.56 2.24
6366 6666 1.481363 GGGGGATATAGTAGCGAAGGC 59.519 57.143 0.00 0.00 40.37 4.35
6405 6705 2.831770 CATAGGGTGATGCCGGCT 59.168 61.111 29.70 13.55 38.44 5.52
6479 6785 4.399303 AGAACCTGCATATGTTAAACTGGC 59.601 41.667 4.29 0.00 0.00 4.85
6565 6871 1.826385 CAAACATGAGGTGGGAGGAC 58.174 55.000 0.00 0.00 0.00 3.85
6573 6879 1.212934 AGGTGGGAGGACGAGTAGGA 61.213 60.000 0.00 0.00 0.00 2.94
6580 6886 3.349022 GGAGGACGAGTAGGATAGGATG 58.651 54.545 0.00 0.00 0.00 3.51
6594 6905 0.325296 AGGATGGGACCTAGCACGAA 60.325 55.000 0.00 0.00 38.65 3.85
6595 6906 0.105039 GGATGGGACCTAGCACGAAG 59.895 60.000 0.00 0.00 0.00 3.79
6596 6907 0.530870 GATGGGACCTAGCACGAAGC 60.531 60.000 0.00 0.00 46.19 3.86
6664 6975 4.379243 CTTGCTCTCCGGGTGCGT 62.379 66.667 0.00 0.00 37.26 5.24
6665 6976 4.680237 TTGCTCTCCGGGTGCGTG 62.680 66.667 0.00 0.00 37.26 5.34
6677 6988 4.994471 TGCGTGCCTGACCAGCAG 62.994 66.667 0.00 0.00 41.87 4.24
6684 6995 4.767255 CTGACCAGCAGCCCCGTC 62.767 72.222 0.00 0.00 37.90 4.79
6827 7138 2.592212 CTTTGGCAGCAACAAACGG 58.408 52.632 0.00 0.00 34.43 4.44
6841 7155 0.324943 AAACGGGTGAGGTCCAGATG 59.675 55.000 0.00 0.00 0.00 2.90
6842 7156 0.836400 AACGGGTGAGGTCCAGATGT 60.836 55.000 0.00 0.00 0.00 3.06
6843 7157 0.040646 ACGGGTGAGGTCCAGATGTA 59.959 55.000 0.00 0.00 0.00 2.29
6844 7158 0.747255 CGGGTGAGGTCCAGATGTAG 59.253 60.000 0.00 0.00 0.00 2.74
6845 7159 1.685180 CGGGTGAGGTCCAGATGTAGA 60.685 57.143 0.00 0.00 0.00 2.59
6963 7292 4.489771 CGAGGAAGCCCGGCCATT 62.490 66.667 5.55 0.00 37.58 3.16
6964 7293 2.517166 GAGGAAGCCCGGCCATTC 60.517 66.667 5.55 4.21 37.58 2.67
6965 7294 4.129148 AGGAAGCCCGGCCATTCC 62.129 66.667 18.69 18.69 42.37 3.01
7001 7332 5.594317 GCCTGCCCTTCTTCATTAAAATCTA 59.406 40.000 0.00 0.00 0.00 1.98
7003 7334 7.522889 GCCTGCCCTTCTTCATTAAAATCTATC 60.523 40.741 0.00 0.00 0.00 2.08
7013 7344 7.297936 TCATTAAAATCTATCGCTAGACCCA 57.702 36.000 0.00 0.00 36.81 4.51
7015 7346 9.031537 TCATTAAAATCTATCGCTAGACCCATA 57.968 33.333 0.00 0.00 36.81 2.74
7061 7506 2.797278 GGTCGCATGGGTCTCCGAT 61.797 63.158 9.86 0.00 35.24 4.18
7129 7574 4.833380 TCCCTTCTTCTTCTTCTTCTTCGA 59.167 41.667 0.00 0.00 0.00 3.71
7183 7816 3.392285 TCGATCTGAATCAACCCATCCAT 59.608 43.478 0.00 0.00 31.76 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.615850 CCTCTTCCTCCACAACTCCC 59.384 60.000 0.00 0.00 0.00 4.30
58 59 0.529833 CTCCACATCTCGCACTCACT 59.470 55.000 0.00 0.00 0.00 3.41
161 162 0.955919 GCAACTTCCCGAGGAACCAG 60.956 60.000 1.68 0.00 36.71 4.00
202 203 3.190849 CCGACGCGACCTCTCGTA 61.191 66.667 15.93 0.00 42.33 3.43
230 231 3.075005 ATGTGGTCGGACGGGAGG 61.075 66.667 1.43 0.00 0.00 4.30
311 316 1.298157 CTTTCCTTCCGATGCACGCA 61.298 55.000 0.00 0.00 41.07 5.24
461 466 2.238353 CGGTCGTATATCGGTCCGT 58.762 57.895 11.88 1.23 44.56 4.69
480 485 3.030291 AGACTTGTTTTGCCATCCAACA 58.970 40.909 0.00 0.00 31.97 3.33
512 518 6.315393 ACGTCAACTCTTAAATTATCCGCAAT 59.685 34.615 0.00 0.00 0.00 3.56
520 526 8.227791 GCATCTTCAACGTCAACTCTTAAATTA 58.772 33.333 0.00 0.00 0.00 1.40
521 527 7.078228 GCATCTTCAACGTCAACTCTTAAATT 58.922 34.615 0.00 0.00 0.00 1.82
526 532 2.808543 GGCATCTTCAACGTCAACTCTT 59.191 45.455 0.00 0.00 0.00 2.85
529 535 1.072331 AGGGCATCTTCAACGTCAACT 59.928 47.619 0.00 0.00 0.00 3.16
532 538 3.410631 TTTAGGGCATCTTCAACGTCA 57.589 42.857 0.00 0.00 0.00 4.35
534 540 4.331717 CGTATTTTAGGGCATCTTCAACGT 59.668 41.667 0.00 0.00 0.00 3.99
551 557 5.552870 AGGGCATCTTAGATGACGTATTT 57.447 39.130 24.63 4.43 0.00 1.40
565 571 6.776603 AGTAGACTACGTATTTTAGGGCATCT 59.223 38.462 6.98 0.00 0.00 2.90
566 572 6.979465 AGTAGACTACGTATTTTAGGGCATC 58.021 40.000 6.98 0.00 0.00 3.91
567 573 6.776603 AGAGTAGACTACGTATTTTAGGGCAT 59.223 38.462 6.98 0.00 0.00 4.40
569 575 6.261826 TCAGAGTAGACTACGTATTTTAGGGC 59.738 42.308 6.98 0.00 0.00 5.19
570 576 7.798596 TCAGAGTAGACTACGTATTTTAGGG 57.201 40.000 6.98 0.00 0.00 3.53
577 583 9.557061 TGATGTATTTCAGAGTAGACTACGTAT 57.443 33.333 6.98 0.00 0.00 3.06
578 584 8.953368 TGATGTATTTCAGAGTAGACTACGTA 57.047 34.615 6.98 0.00 0.00 3.57
579 585 7.860918 TGATGTATTTCAGAGTAGACTACGT 57.139 36.000 6.98 0.00 0.00 3.57
580 586 8.018520 GGATGATGTATTTCAGAGTAGACTACG 58.981 40.741 6.98 0.00 0.00 3.51
581 587 8.851145 TGGATGATGTATTTCAGAGTAGACTAC 58.149 37.037 4.32 4.32 0.00 2.73
582 588 8.996651 TGGATGATGTATTTCAGAGTAGACTA 57.003 34.615 0.00 0.00 0.00 2.59
583 589 7.904558 TGGATGATGTATTTCAGAGTAGACT 57.095 36.000 0.00 0.00 0.00 3.24
588 594 8.932610 ACTCTAATGGATGATGTATTTCAGAGT 58.067 33.333 0.00 0.00 0.00 3.24
589 595 9.775854 AACTCTAATGGATGATGTATTTCAGAG 57.224 33.333 0.00 0.00 0.00 3.35
590 596 9.551734 CAACTCTAATGGATGATGTATTTCAGA 57.448 33.333 0.00 0.00 0.00 3.27
591 597 8.288208 GCAACTCTAATGGATGATGTATTTCAG 58.712 37.037 0.00 0.00 0.00 3.02
592 598 7.994911 AGCAACTCTAATGGATGATGTATTTCA 59.005 33.333 0.00 0.00 0.00 2.69
593 599 8.388484 AGCAACTCTAATGGATGATGTATTTC 57.612 34.615 0.00 0.00 0.00 2.17
594 600 8.216423 AGAGCAACTCTAATGGATGATGTATTT 58.784 33.333 0.00 0.00 39.28 1.40
610 616 0.880278 TTTCGCGCAAGAGCAACTCT 60.880 50.000 8.75 0.00 43.37 3.24
614 620 0.310543 AACATTTCGCGCAAGAGCAA 59.689 45.000 8.75 0.00 42.27 3.91
626 632 1.723003 ACCGCGAACTACGAACATTTC 59.277 47.619 8.23 0.00 45.77 2.17
627 633 1.458064 CACCGCGAACTACGAACATTT 59.542 47.619 8.23 0.00 45.77 2.32
628 634 1.065358 CACCGCGAACTACGAACATT 58.935 50.000 8.23 0.00 45.77 2.71
629 635 1.349259 GCACCGCGAACTACGAACAT 61.349 55.000 8.23 0.00 45.77 2.71
669 685 8.798153 GCGAAGGAAATAAAAAGTCAATGTATG 58.202 33.333 0.00 0.00 0.00 2.39
691 707 0.251386 AGAGAGTGGGAGACAGCGAA 60.251 55.000 0.00 0.00 0.00 4.70
773 797 0.661552 CCTGAATGAATGCTCCTGCG 59.338 55.000 0.00 0.00 43.34 5.18
825 861 0.243636 GTTTATGGGTGTGTGCTGCC 59.756 55.000 0.00 0.00 0.00 4.85
919 955 4.172232 CCGGATGGAGGGGAGGGA 62.172 72.222 0.00 0.00 37.49 4.20
1066 1102 2.352421 CGAAAAGAACTGGGCGAGAGTA 60.352 50.000 2.65 0.00 0.00 2.59
1178 1242 0.251922 AGATTTGGCCACAGGTGCAT 60.252 50.000 3.88 0.00 0.00 3.96
1236 1300 0.994247 AGGCCATGATCCAGTGACAA 59.006 50.000 5.01 0.00 0.00 3.18
1314 1378 5.732810 GCTTTAGAAGAATACGCGGAGTAGT 60.733 44.000 12.47 0.00 38.94 2.73
1339 1403 6.377146 GCAGTAAAAGATTTAGGACATCCCAA 59.623 38.462 0.00 0.00 37.41 4.12
1400 1465 5.365025 ACAAGATCATACCTCTAGCATGTGT 59.635 40.000 0.00 0.00 0.00 3.72
1428 1493 0.962356 GCCCACCTGACAACTCATGG 60.962 60.000 0.00 0.00 0.00 3.66
1575 1640 1.665679 GGACGTCATCGAACATGCAAT 59.334 47.619 18.91 0.00 40.62 3.56
1601 1666 1.184322 AACGCCAACCCATGCAATCA 61.184 50.000 0.00 0.00 0.00 2.57
1748 1819 2.027745 ACAATAGGTGACTGCAGACCTG 60.028 50.000 28.79 18.98 42.80 4.00
1754 1825 4.496840 CGTCGTATACAATAGGTGACTGCA 60.497 45.833 3.32 0.00 43.88 4.41
1845 1916 1.149987 CCGCGCCTTTACTGTTAACA 58.850 50.000 8.28 8.28 0.00 2.41
1951 2022 6.368516 GCTTCAAATAAGTTGGCATTGCTTAA 59.631 34.615 8.82 1.85 37.85 1.85
2006 2077 4.143543 TCTGAATTCCAATGCAGTGTTGA 58.856 39.130 13.82 0.88 41.87 3.18
2073 2144 2.301583 TCAGTTGAATCCGACACATCCA 59.698 45.455 0.00 0.00 0.00 3.41
2081 2152 4.452114 CAGACATTGTTCAGTTGAATCCGA 59.548 41.667 0.00 0.00 36.33 4.55
2116 2187 3.694566 GGTAAATAGCAAAGTGGACAGGG 59.305 47.826 0.00 0.00 0.00 4.45
2217 2292 4.399303 GCAGGGCCAATTATGTATGGATAC 59.601 45.833 6.18 0.00 39.12 2.24
2564 2647 2.162208 CGACAGTCATTTGTGATTGGGG 59.838 50.000 0.41 0.00 31.01 4.96
2757 2844 9.065871 GTGCACATTCTGAAATAAACAAGATAC 57.934 33.333 13.17 0.00 0.00 2.24
3060 3147 4.954875 AGAGATTCTGCCATGCTAGTAAC 58.045 43.478 0.00 0.00 0.00 2.50
3084 3171 6.092259 ACAAGAGCTTGAAATTGTATACGGAC 59.908 38.462 16.47 0.00 42.93 4.79
3153 3240 6.096423 GGTCTCTGTACATGTCCAATGTAGTA 59.904 42.308 0.00 0.00 35.43 1.82
3340 3427 3.140623 GCCCATTTTCTTGCACACAAAT 58.859 40.909 0.00 0.00 34.74 2.32
3433 3521 5.865085 TGCCAACTTTGTTCAGTACTATCT 58.135 37.500 0.00 0.00 0.00 1.98
3438 3526 4.893424 TTCTGCCAACTTTGTTCAGTAC 57.107 40.909 7.78 0.00 32.36 2.73
3639 3727 3.323403 AGCAAGAGATATCCTAAAGCGCT 59.677 43.478 2.64 2.64 0.00 5.92
3709 3797 1.825622 GCCCTAACCTCCAGCATGC 60.826 63.158 10.51 10.51 31.97 4.06
3899 3987 2.635915 TGGGTACAGACTTGGGTAACAG 59.364 50.000 0.00 0.00 39.74 3.16
3994 4084 9.758651 TGATGTATAATAAATCTGTAGCAACGT 57.241 29.630 0.00 0.00 0.00 3.99
4016 4106 7.620600 GCACAAGCATTTAAACAACTGATGATG 60.621 37.037 0.00 0.00 41.58 3.07
4019 4109 5.107375 GGCACAAGCATTTAAACAACTGATG 60.107 40.000 0.00 0.00 44.61 3.07
4084 4176 6.205464 CAGTACATATGGTTGATTGGGCTTAG 59.795 42.308 7.80 0.00 0.00 2.18
4199 4334 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
4217 4352 9.602568 CTAAATCTTTTCTTTACTACTCCCTCC 57.397 37.037 0.00 0.00 0.00 4.30
4280 4567 2.031870 ACCCTGCCAACAAGAGAAAAC 58.968 47.619 0.00 0.00 0.00 2.43
4281 4568 2.091885 AGACCCTGCCAACAAGAGAAAA 60.092 45.455 0.00 0.00 0.00 2.29
4393 4681 8.428186 TCAAGTTTCATAGTTTTTGTCGTAGT 57.572 30.769 0.00 0.00 0.00 2.73
4442 4730 6.839124 TGAACCTCAAAACGGTATCTAGTA 57.161 37.500 0.00 0.00 33.53 1.82
4593 4882 5.488341 TCCAGAACTAGCATAAGTTGGTTC 58.512 41.667 3.43 3.43 43.47 3.62
4859 5148 3.746492 ACTTTAAACCAGTCATGTCGAGC 59.254 43.478 0.00 0.00 0.00 5.03
4915 5207 9.408648 AGAAGAAAACCATTTTGAGAAGACTAA 57.591 29.630 0.00 0.00 31.94 2.24
5315 5610 4.082245 TCACGCTAGATCATCAACAGTTGA 60.082 41.667 18.42 18.42 45.01 3.18
5316 5611 4.032217 GTCACGCTAGATCATCAACAGTTG 59.968 45.833 6.99 6.99 0.00 3.16
5317 5612 4.177026 GTCACGCTAGATCATCAACAGTT 58.823 43.478 0.00 0.00 0.00 3.16
5318 5613 3.193479 TGTCACGCTAGATCATCAACAGT 59.807 43.478 0.00 0.00 0.00 3.55
5319 5614 3.774066 TGTCACGCTAGATCATCAACAG 58.226 45.455 0.00 0.00 0.00 3.16
5320 5615 3.866883 TGTCACGCTAGATCATCAACA 57.133 42.857 0.00 0.00 0.00 3.33
5321 5616 5.725110 AAATGTCACGCTAGATCATCAAC 57.275 39.130 0.00 0.00 0.00 3.18
5322 5617 6.149308 ACAAAAATGTCACGCTAGATCATCAA 59.851 34.615 0.00 0.00 0.00 2.57
5323 5618 5.643348 ACAAAAATGTCACGCTAGATCATCA 59.357 36.000 0.00 0.00 0.00 3.07
5324 5619 5.961843 CACAAAAATGTCACGCTAGATCATC 59.038 40.000 0.00 0.00 0.00 2.92
5325 5620 5.674569 GCACAAAAATGTCACGCTAGATCAT 60.675 40.000 0.00 0.00 0.00 2.45
5326 5621 4.378356 GCACAAAAATGTCACGCTAGATCA 60.378 41.667 0.00 0.00 0.00 2.92
5327 5622 4.091424 GCACAAAAATGTCACGCTAGATC 58.909 43.478 0.00 0.00 0.00 2.75
5328 5623 3.119849 GGCACAAAAATGTCACGCTAGAT 60.120 43.478 0.00 0.00 0.00 1.98
5329 5624 2.225491 GGCACAAAAATGTCACGCTAGA 59.775 45.455 0.00 0.00 0.00 2.43
5330 5625 2.031245 TGGCACAAAAATGTCACGCTAG 60.031 45.455 0.00 0.00 31.92 3.42
5331 5626 1.950216 TGGCACAAAAATGTCACGCTA 59.050 42.857 0.00 0.00 31.92 4.26
5332 5627 0.743688 TGGCACAAAAATGTCACGCT 59.256 45.000 0.00 0.00 31.92 5.07
5333 5628 3.264666 TGGCACAAAAATGTCACGC 57.735 47.368 0.00 0.00 31.92 5.34
5359 5654 9.357652 GCACTCTGCAATTTTATCAGAAAAATA 57.642 29.630 0.00 0.00 44.26 1.40
5360 5655 8.248117 GCACTCTGCAATTTTATCAGAAAAAT 57.752 30.769 0.00 0.00 44.26 1.82
5361 5656 7.642071 GCACTCTGCAATTTTATCAGAAAAA 57.358 32.000 0.00 0.00 44.26 1.94
5377 5672 3.070018 ACACAAGTAATGAGCACTCTGC 58.930 45.455 0.00 0.00 45.46 4.26
5378 5673 4.612259 GCAACACAAGTAATGAGCACTCTG 60.612 45.833 0.00 0.00 0.00 3.35
5379 5674 3.499918 GCAACACAAGTAATGAGCACTCT 59.500 43.478 0.00 0.00 0.00 3.24
5380 5675 3.499918 AGCAACACAAGTAATGAGCACTC 59.500 43.478 0.00 0.00 0.00 3.51
5381 5676 3.480470 AGCAACACAAGTAATGAGCACT 58.520 40.909 0.00 0.00 0.00 4.40
5382 5677 3.904136 AGCAACACAAGTAATGAGCAC 57.096 42.857 0.00 0.00 0.00 4.40
5383 5678 5.473162 ACATAAGCAACACAAGTAATGAGCA 59.527 36.000 0.00 0.00 0.00 4.26
5384 5679 5.796935 CACATAAGCAACACAAGTAATGAGC 59.203 40.000 0.00 0.00 0.00 4.26
5385 5680 6.902341 ACACATAAGCAACACAAGTAATGAG 58.098 36.000 0.00 0.00 0.00 2.90
5386 5681 6.875948 ACACATAAGCAACACAAGTAATGA 57.124 33.333 0.00 0.00 0.00 2.57
5387 5682 9.064804 CATAACACATAAGCAACACAAGTAATG 57.935 33.333 0.00 0.00 0.00 1.90
5388 5683 8.243426 CCATAACACATAAGCAACACAAGTAAT 58.757 33.333 0.00 0.00 0.00 1.89
5389 5684 7.229707 ACCATAACACATAAGCAACACAAGTAA 59.770 33.333 0.00 0.00 0.00 2.24
5390 5685 6.712998 ACCATAACACATAAGCAACACAAGTA 59.287 34.615 0.00 0.00 0.00 2.24
5391 5686 5.534654 ACCATAACACATAAGCAACACAAGT 59.465 36.000 0.00 0.00 0.00 3.16
5392 5687 5.858049 CACCATAACACATAAGCAACACAAG 59.142 40.000 0.00 0.00 0.00 3.16
5393 5688 5.532779 TCACCATAACACATAAGCAACACAA 59.467 36.000 0.00 0.00 0.00 3.33
5394 5689 5.066593 TCACCATAACACATAAGCAACACA 58.933 37.500 0.00 0.00 0.00 3.72
5395 5690 5.621197 TCACCATAACACATAAGCAACAC 57.379 39.130 0.00 0.00 0.00 3.32
5396 5691 4.155826 GCTCACCATAACACATAAGCAACA 59.844 41.667 0.00 0.00 0.00 3.33
5397 5692 4.396166 AGCTCACCATAACACATAAGCAAC 59.604 41.667 0.00 0.00 0.00 4.17
5398 5693 4.588899 AGCTCACCATAACACATAAGCAA 58.411 39.130 0.00 0.00 0.00 3.91
5399 5694 4.220693 AGCTCACCATAACACATAAGCA 57.779 40.909 0.00 0.00 0.00 3.91
5400 5695 4.212214 GCTAGCTCACCATAACACATAAGC 59.788 45.833 7.70 0.00 0.00 3.09
5401 5696 4.445718 CGCTAGCTCACCATAACACATAAG 59.554 45.833 13.93 0.00 0.00 1.73
5402 5697 4.142026 ACGCTAGCTCACCATAACACATAA 60.142 41.667 13.93 0.00 0.00 1.90
5403 5698 3.383505 ACGCTAGCTCACCATAACACATA 59.616 43.478 13.93 0.00 0.00 2.29
5404 5699 2.168521 ACGCTAGCTCACCATAACACAT 59.831 45.455 13.93 0.00 0.00 3.21
5405 5700 1.548719 ACGCTAGCTCACCATAACACA 59.451 47.619 13.93 0.00 0.00 3.72
5406 5701 1.927174 CACGCTAGCTCACCATAACAC 59.073 52.381 13.93 0.00 0.00 3.32
5407 5702 1.822371 TCACGCTAGCTCACCATAACA 59.178 47.619 13.93 0.00 0.00 2.41
5408 5703 2.194271 GTCACGCTAGCTCACCATAAC 58.806 52.381 13.93 0.00 0.00 1.89
5409 5704 1.822371 TGTCACGCTAGCTCACCATAA 59.178 47.619 13.93 0.00 0.00 1.90
5410 5705 1.470051 TGTCACGCTAGCTCACCATA 58.530 50.000 13.93 0.00 0.00 2.74
5411 5706 0.826715 ATGTCACGCTAGCTCACCAT 59.173 50.000 13.93 7.04 0.00 3.55
5412 5707 0.608130 AATGTCACGCTAGCTCACCA 59.392 50.000 13.93 4.87 0.00 4.17
5413 5708 1.726853 AAATGTCACGCTAGCTCACC 58.273 50.000 13.93 0.00 0.00 4.02
5414 5709 3.482786 CAAAAATGTCACGCTAGCTCAC 58.517 45.455 13.93 6.87 0.00 3.51
5415 5710 2.095768 GCAAAAATGTCACGCTAGCTCA 60.096 45.455 13.93 7.15 0.00 4.26
5416 5711 2.160417 AGCAAAAATGTCACGCTAGCTC 59.840 45.455 13.93 1.37 0.00 4.09
5417 5712 2.095567 CAGCAAAAATGTCACGCTAGCT 60.096 45.455 13.93 0.00 0.00 3.32
5418 5713 2.245096 CAGCAAAAATGTCACGCTAGC 58.755 47.619 4.06 4.06 0.00 3.42
5419 5714 3.542712 ACAGCAAAAATGTCACGCTAG 57.457 42.857 0.00 0.00 0.00 3.42
5420 5715 3.066064 ACAACAGCAAAAATGTCACGCTA 59.934 39.130 0.00 0.00 0.00 4.26
5421 5716 2.159254 ACAACAGCAAAAATGTCACGCT 60.159 40.909 0.00 0.00 0.00 5.07
5422 5717 2.192624 ACAACAGCAAAAATGTCACGC 58.807 42.857 0.00 0.00 0.00 5.34
5423 5718 4.492247 CCAAACAACAGCAAAAATGTCACG 60.492 41.667 0.00 0.00 0.00 4.35
5424 5719 4.629200 TCCAAACAACAGCAAAAATGTCAC 59.371 37.500 0.00 0.00 0.00 3.67
5425 5720 4.825422 TCCAAACAACAGCAAAAATGTCA 58.175 34.783 0.00 0.00 0.00 3.58
5426 5721 5.989551 ATCCAAACAACAGCAAAAATGTC 57.010 34.783 0.00 0.00 0.00 3.06
5427 5722 6.820656 TGTAATCCAAACAACAGCAAAAATGT 59.179 30.769 0.00 0.00 0.00 2.71
5428 5723 7.224362 TCTGTAATCCAAACAACAGCAAAAATG 59.776 33.333 0.00 0.00 39.33 2.32
5429 5724 7.271511 TCTGTAATCCAAACAACAGCAAAAAT 58.728 30.769 0.00 0.00 39.33 1.82
5430 5725 6.634805 TCTGTAATCCAAACAACAGCAAAAA 58.365 32.000 0.00 0.00 39.33 1.94
5431 5726 6.214191 TCTGTAATCCAAACAACAGCAAAA 57.786 33.333 0.00 0.00 39.33 2.44
5432 5727 5.843673 TCTGTAATCCAAACAACAGCAAA 57.156 34.783 0.00 0.00 39.33 3.68
5433 5728 5.771469 CATCTGTAATCCAAACAACAGCAA 58.229 37.500 0.00 0.00 39.33 3.91
5434 5729 4.321156 GCATCTGTAATCCAAACAACAGCA 60.321 41.667 0.00 0.00 39.33 4.41
5435 5730 4.082571 AGCATCTGTAATCCAAACAACAGC 60.083 41.667 0.00 0.00 39.33 4.40
5436 5731 5.181811 TCAGCATCTGTAATCCAAACAACAG 59.818 40.000 0.00 0.00 40.54 3.16
5437 5732 5.069318 TCAGCATCTGTAATCCAAACAACA 58.931 37.500 0.00 0.00 32.61 3.33
5438 5733 5.182001 ACTCAGCATCTGTAATCCAAACAAC 59.818 40.000 0.00 0.00 32.61 3.32
5439 5734 5.316167 ACTCAGCATCTGTAATCCAAACAA 58.684 37.500 0.00 0.00 32.61 2.83
5440 5735 4.910195 ACTCAGCATCTGTAATCCAAACA 58.090 39.130 0.00 0.00 32.61 2.83
5441 5736 5.412594 TGAACTCAGCATCTGTAATCCAAAC 59.587 40.000 0.00 0.00 32.61 2.93
5442 5737 5.559770 TGAACTCAGCATCTGTAATCCAAA 58.440 37.500 0.00 0.00 32.61 3.28
5443 5738 5.164620 TGAACTCAGCATCTGTAATCCAA 57.835 39.130 0.00 0.00 32.61 3.53
5444 5739 4.824479 TGAACTCAGCATCTGTAATCCA 57.176 40.909 0.00 0.00 32.61 3.41
5445 5740 7.658982 TGATATTGAACTCAGCATCTGTAATCC 59.341 37.037 0.00 0.00 32.61 3.01
5446 5741 8.599055 TGATATTGAACTCAGCATCTGTAATC 57.401 34.615 0.00 0.00 32.61 1.75
5447 5742 8.834465 GTTGATATTGAACTCAGCATCTGTAAT 58.166 33.333 0.00 0.00 32.61 1.89
5448 5743 8.043113 AGTTGATATTGAACTCAGCATCTGTAA 58.957 33.333 0.00 0.00 32.61 2.41
5449 5744 7.493645 CAGTTGATATTGAACTCAGCATCTGTA 59.506 37.037 0.00 0.00 31.05 2.74
5450 5745 6.315642 CAGTTGATATTGAACTCAGCATCTGT 59.684 38.462 0.00 0.00 31.05 3.41
5451 5746 6.315642 ACAGTTGATATTGAACTCAGCATCTG 59.684 38.462 0.00 0.00 31.05 2.90
5452 5747 6.413052 ACAGTTGATATTGAACTCAGCATCT 58.587 36.000 0.00 0.00 31.05 2.90
5453 5748 6.674694 ACAGTTGATATTGAACTCAGCATC 57.325 37.500 0.00 0.00 31.05 3.91
5454 5749 6.656270 TCAACAGTTGATATTGAACTCAGCAT 59.344 34.615 12.24 0.00 34.08 3.79
5455 5750 5.997129 TCAACAGTTGATATTGAACTCAGCA 59.003 36.000 12.24 0.00 34.08 4.41
5456 5751 6.486253 TCAACAGTTGATATTGAACTCAGC 57.514 37.500 12.24 0.00 34.08 4.26
5578 5873 0.759346 ATACAATCTGAGGACGGGCC 59.241 55.000 0.00 0.00 0.00 5.80
5880 6177 5.866633 GTCACTAACTTTGGATGTCAGAGAG 59.133 44.000 0.00 0.00 32.49 3.20
5882 6179 5.541845 TGTCACTAACTTTGGATGTCAGAG 58.458 41.667 0.00 0.00 34.14 3.35
5888 6185 4.455877 GGGACTTGTCACTAACTTTGGATG 59.544 45.833 3.08 0.00 0.00 3.51
6065 6364 1.291184 CCTTGTGCGACGATTGCTGA 61.291 55.000 0.00 0.00 0.00 4.26
6113 6412 3.473647 TCAGGCTCCGGGATGCTG 61.474 66.667 0.00 11.91 0.00 4.41
6239 6538 2.756691 GCATGCAGATGGCCACCA 60.757 61.111 8.16 3.21 43.89 4.17
6241 6540 3.896133 CCGCATGCAGATGGCCAC 61.896 66.667 19.57 1.58 43.89 5.01
6242 6541 4.112433 TCCGCATGCAGATGGCCA 62.112 61.111 19.57 8.56 43.89 5.36
6249 6548 2.749044 AAGGTGCTCCGCATGCAG 60.749 61.111 19.57 9.70 41.91 4.41
6267 6566 0.373716 GTCGCTCGCATTGGTTAAGG 59.626 55.000 0.00 0.00 0.00 2.69
6268 6567 0.373716 GGTCGCTCGCATTGGTTAAG 59.626 55.000 0.00 0.00 0.00 1.85
6269 6568 0.036765 AGGTCGCTCGCATTGGTTAA 60.037 50.000 0.00 0.00 0.00 2.01
6270 6569 0.459585 GAGGTCGCTCGCATTGGTTA 60.460 55.000 0.00 0.00 0.00 2.85
6280 6579 1.492720 GATTTCATCGGAGGTCGCTC 58.507 55.000 0.00 0.00 39.05 5.03
6284 6583 3.475566 TCATGGATTTCATCGGAGGTC 57.524 47.619 0.00 0.00 32.92 3.85
6298 6597 6.071447 CCAACATGGACAAGTAAAATCATGGA 60.071 38.462 0.00 0.00 40.96 3.41
6299 6598 6.101332 CCAACATGGACAAGTAAAATCATGG 58.899 40.000 0.00 0.00 40.96 3.66
6300 6599 6.690530 ACCAACATGGACAAGTAAAATCATG 58.309 36.000 2.85 0.00 40.96 3.07
6308 6607 3.866703 TCCAACCAACATGGACAAGTA 57.133 42.857 2.85 0.00 41.98 2.24
6371 6671 1.369091 ATGCATCACGGAGGAAACGC 61.369 55.000 0.00 0.00 34.00 4.84
6372 6672 1.860950 CTATGCATCACGGAGGAAACG 59.139 52.381 0.19 0.00 37.36 3.60
6373 6673 2.213499 CCTATGCATCACGGAGGAAAC 58.787 52.381 0.19 0.00 0.00 2.78
6374 6674 1.140852 CCCTATGCATCACGGAGGAAA 59.859 52.381 13.13 0.00 0.00 3.13
6375 6675 0.758734 CCCTATGCATCACGGAGGAA 59.241 55.000 13.13 0.00 0.00 3.36
6376 6676 0.398522 ACCCTATGCATCACGGAGGA 60.399 55.000 13.13 0.00 0.00 3.71
6377 6677 0.250038 CACCCTATGCATCACGGAGG 60.250 60.000 0.19 3.59 0.00 4.30
6405 6705 0.543410 TCTTCCAGCTACGACCCCAA 60.543 55.000 0.00 0.00 0.00 4.12
6410 6710 3.440228 GTTCATCTCTTCCAGCTACGAC 58.560 50.000 0.00 0.00 0.00 4.34
6413 6713 2.482142 CCGGTTCATCTCTTCCAGCTAC 60.482 54.545 0.00 0.00 0.00 3.58
6479 6785 8.265165 CATCATCCATGGATCTTGTTATAGTG 57.735 38.462 24.93 10.56 31.62 2.74
6565 6871 2.041891 AGGTCCCATCCTATCCTACTCG 59.958 54.545 0.00 0.00 35.87 4.18
6573 6879 1.147191 TCGTGCTAGGTCCCATCCTAT 59.853 52.381 0.00 0.00 39.07 2.57
6580 6886 1.153549 CTGCTTCGTGCTAGGTCCC 60.154 63.158 0.00 0.00 43.37 4.46
6594 6905 2.583441 TTGCTCCGCCACTACTGCT 61.583 57.895 0.00 0.00 0.00 4.24
6595 6906 2.047274 TTGCTCCGCCACTACTGC 60.047 61.111 0.00 0.00 0.00 4.40
6596 6907 2.094659 CGTTGCTCCGCCACTACTG 61.095 63.158 0.00 0.00 0.00 2.74
6667 6978 4.767255 GACGGGGCTGCTGGTCAG 62.767 72.222 0.00 0.00 45.62 3.51
6827 7138 2.741145 ACTCTACATCTGGACCTCACC 58.259 52.381 0.00 0.00 0.00 4.02
6841 7155 4.871993 TCGTCGAAGATGGTTACTCTAC 57.128 45.455 0.00 0.00 45.05 2.59
6842 7156 4.514441 GGATCGTCGAAGATGGTTACTCTA 59.486 45.833 18.77 0.00 45.05 2.43
6843 7157 3.315749 GGATCGTCGAAGATGGTTACTCT 59.684 47.826 18.77 0.00 45.05 3.24
6844 7158 3.550436 GGGATCGTCGAAGATGGTTACTC 60.550 52.174 18.77 3.09 45.05 2.59
6845 7159 2.361438 GGGATCGTCGAAGATGGTTACT 59.639 50.000 18.77 0.00 45.05 2.24
6910 7239 0.398318 AGAAAAACGGCCTGAGCTCT 59.602 50.000 16.19 0.00 39.73 4.09
6980 7309 6.017109 GCGATAGATTTTAATGAAGAAGGGCA 60.017 38.462 0.00 0.00 39.76 5.36
7061 7506 0.323999 AGCTTGCATTGCATGAGGGA 60.324 50.000 24.11 3.75 38.76 4.20
7129 7574 1.875514 GTTTCGGACGGCTAGGTTTTT 59.124 47.619 0.00 0.00 0.00 1.94
7183 7816 0.105194 TCACACTCCCAGAGTCCCAA 60.105 55.000 0.00 0.00 41.37 4.12
7189 7822 2.157640 ATCTCCTCACACTCCCAGAG 57.842 55.000 0.00 0.00 35.52 3.35
7190 7823 2.311841 TGTATCTCCTCACACTCCCAGA 59.688 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.