Multiple sequence alignment - TraesCS6D01G149000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G149000 chr6D 100.000 4847 0 0 1 4847 122742420 122737574 0.000000e+00 8951
1 TraesCS6D01G149000 chr6D 83.478 230 38 0 1446 1675 395025824 395026053 1.060000e-51 215
2 TraesCS6D01G149000 chr6D 83.043 230 39 0 1446 1675 395036372 395036601 4.920000e-50 209
3 TraesCS6D01G149000 chr7D 98.772 1547 19 0 1446 2992 65589632 65591178 0.000000e+00 2752
4 TraesCS6D01G149000 chr7D 85.193 466 44 7 2535 2993 637571193 637571640 5.720000e-124 455
5 TraesCS6D01G149000 chr7D 82.759 406 43 6 2116 2501 637570953 637571351 2.160000e-88 337
6 TraesCS6D01G149000 chr7D 91.429 175 14 1 1671 1844 637570755 637570929 6.270000e-59 239
7 TraesCS6D01G149000 chr7D 80.135 297 54 5 1442 1735 422106330 422106624 2.940000e-52 217
8 TraesCS6D01G149000 chr6A 95.618 639 25 3 3622 4260 162087245 162086610 0.000000e+00 1022
9 TraesCS6D01G149000 chr6A 83.977 880 55 43 3 862 162089322 162088509 0.000000e+00 765
10 TraesCS6D01G149000 chr6A 89.897 584 24 7 866 1419 162088391 162087813 0.000000e+00 719
11 TraesCS6D01G149000 chr6A 93.750 400 18 2 4448 4840 162086587 162086188 1.160000e-165 593
12 TraesCS6D01G149000 chr6A 86.296 270 35 2 2724 2992 18929440 18929708 4.750000e-75 292
13 TraesCS6D01G149000 chr6A 95.152 165 8 0 3137 3301 162087743 162087579 1.340000e-65 261
14 TraesCS6D01G149000 chr6A 81.176 255 38 10 2742 2992 490308822 490309070 3.830000e-46 196
15 TraesCS6D01G149000 chr6A 79.038 291 37 15 3298 3573 162087528 162087247 1.390000e-40 178
16 TraesCS6D01G149000 chr2B 88.651 793 87 2 1446 2236 385528678 385529469 0.000000e+00 963
17 TraesCS6D01G149000 chr2B 88.875 773 80 4 2225 2992 385532510 385533281 0.000000e+00 946
18 TraesCS6D01G149000 chr6B 92.998 457 23 4 964 1419 216506967 216506519 0.000000e+00 658
19 TraesCS6D01G149000 chr6B 80.000 855 59 34 137 962 216507930 216507159 3.320000e-146 529
20 TraesCS6D01G149000 chr6B 85.441 261 26 9 4161 4417 216506138 216505886 1.340000e-65 261
21 TraesCS6D01G149000 chr6B 93.082 159 11 0 3137 3295 216506389 216506231 2.920000e-57 233
22 TraesCS6D01G149000 chr6B 90.000 150 14 1 4496 4644 216505916 216505767 4.950000e-45 193
23 TraesCS6D01G149000 chr6B 98.795 83 1 0 1 83 216508032 216507950 1.090000e-31 148
24 TraesCS6D01G149000 chr6B 85.841 113 16 0 3012 3124 599407715 599407603 2.370000e-23 121
25 TraesCS6D01G149000 chr7B 86.413 552 63 10 1441 1982 641482283 641482832 1.160000e-165 593
26 TraesCS6D01G149000 chr7B 83.913 230 37 0 2763 2992 26648309 26648538 2.270000e-53 220
27 TraesCS6D01G149000 chr7A 87.744 359 28 6 2176 2521 728458952 728458597 5.840000e-109 405
28 TraesCS6D01G149000 chr7A 87.187 359 23 5 2130 2466 728236913 728237270 2.120000e-103 387
29 TraesCS6D01G149000 chr7A 80.851 235 45 0 2758 2992 80548018 80548252 8.280000e-43 185
30 TraesCS6D01G149000 chr7A 80.315 254 42 8 2742 2992 198659771 198659523 8.280000e-43 185
31 TraesCS6D01G149000 chr7A 90.598 117 10 1 3008 3124 125770381 125770496 2.340000e-33 154
32 TraesCS6D01G149000 chr1B 79.743 311 59 4 1437 1744 661563787 661564096 6.310000e-54 222
33 TraesCS6D01G149000 chr1B 90.984 122 11 0 3003 3124 187691342 187691463 1.080000e-36 165
34 TraesCS6D01G149000 chr1B 86.555 119 16 0 3006 3124 603384483 603384601 1.090000e-26 132
35 TraesCS6D01G149000 chr5D 85.946 185 22 4 2810 2992 401002325 401002143 1.380000e-45 195
36 TraesCS6D01G149000 chr5D 92.174 115 8 1 3010 3124 526619060 526619173 1.400000e-35 161
37 TraesCS6D01G149000 chr4B 78.056 319 59 6 1445 1752 11622127 11621809 1.780000e-44 191
38 TraesCS6D01G149000 chr4B 96.512 86 1 2 4292 4377 497228696 497228613 1.820000e-29 141
39 TraesCS6D01G149000 chr1A 93.103 116 8 0 3009 3124 14433979 14433864 2.320000e-38 171
40 TraesCS6D01G149000 chr5A 81.522 184 34 0 1444 1627 69097735 69097918 8.400000e-33 152
41 TraesCS6D01G149000 chr5A 96.386 83 2 1 4283 4364 130120855 130120773 8.460000e-28 135
42 TraesCS6D01G149000 chr4A 91.150 113 9 1 3009 3121 482156197 482156086 8.400000e-33 152
43 TraesCS6D01G149000 chr4A 85.185 108 16 0 3010 3117 711346460 711346353 1.430000e-20 111
44 TraesCS6D01G149000 chr3D 96.512 86 1 2 4280 4364 606931939 606932023 1.820000e-29 141
45 TraesCS6D01G149000 chr4D 96.429 84 2 1 4282 4364 401637359 401637276 2.350000e-28 137
46 TraesCS6D01G149000 chr4D 97.500 80 1 1 4286 4364 401529011 401528932 8.460000e-28 135
47 TraesCS6D01G149000 chr3B 97.531 81 1 1 4285 4364 816272077 816272157 2.350000e-28 137
48 TraesCS6D01G149000 chr3A 96.386 83 1 2 4284 4364 739324423 739324505 8.460000e-28 135
49 TraesCS6D01G149000 chr2D 95.062 81 4 0 3044 3124 52951914 52951834 1.420000e-25 128
50 TraesCS6D01G149000 chr2A 92.308 91 6 1 4288 4378 60995750 60995661 1.420000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G149000 chr6D 122737574 122742420 4846 True 8951.000000 8951 100.000000 1 4847 1 chr6D.!!$R1 4846
1 TraesCS6D01G149000 chr7D 65589632 65591178 1546 False 2752.000000 2752 98.772000 1446 2992 1 chr7D.!!$F1 1546
2 TraesCS6D01G149000 chr7D 637570755 637571640 885 False 343.666667 455 86.460333 1671 2993 3 chr7D.!!$F3 1322
3 TraesCS6D01G149000 chr6A 162086188 162089322 3134 True 589.666667 1022 89.572000 3 4840 6 chr6A.!!$R1 4837
4 TraesCS6D01G149000 chr2B 385528678 385533281 4603 False 954.500000 963 88.763000 1446 2992 2 chr2B.!!$F1 1546
5 TraesCS6D01G149000 chr6B 216505767 216508032 2265 True 337.000000 658 90.052667 1 4644 6 chr6B.!!$R2 4643
6 TraesCS6D01G149000 chr7B 641482283 641482832 549 False 593.000000 593 86.413000 1441 1982 1 chr7B.!!$F2 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 708 0.040646 ACGGGTGAGGTCCAGATGTA 59.959 55.000 0.0 0.0 0.0 2.29 F
693 709 0.747255 CGGGTGAGGTCCAGATGTAG 59.253 60.000 0.0 0.0 0.0 2.74 F
1525 1895 1.133513 TGACAGGGCACAAGAAACCAT 60.134 47.619 0.0 0.0 0.0 3.55 F
2512 5961 0.463474 GGCTGGACAAGAGGATGAGC 60.463 60.000 0.0 0.0 0.0 4.26 F
3501 7015 0.095935 CAGATTGCGAACAGAAGGCG 59.904 55.000 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1895 0.249953 TCGGTTAGGCGCAAAGTTGA 60.250 50.0 10.83 0.00 0.00 3.18 R
1744 2118 0.606401 CCAAGTGTTCAGCCGTCCAT 60.606 55.0 0.00 0.00 0.00 3.41 R
3501 7015 0.031585 TATATGTGACGGCGTCCTGC 59.968 55.0 34.28 24.12 45.38 4.85 R
3718 7243 0.036671 GGTAGCCCACGTACAGCTTT 60.037 55.0 10.89 0.00 38.06 3.51 R
4485 8027 0.252193 CAATGGAGGGGGAAAAGGCA 60.252 55.0 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 1.135402 GCACCTTCCTTAACCAATGCG 60.135 52.381 0.00 0.00 0.00 4.73
133 134 1.062587 CTTCCTTAACCAATGCGAGCG 59.937 52.381 0.00 0.00 0.00 5.03
147 148 0.249073 CGAGCGACCTCCGATGAAAT 60.249 55.000 0.00 0.00 41.76 2.17
148 149 1.492720 GAGCGACCTCCGATGAAATC 58.507 55.000 0.00 0.00 41.76 2.17
149 150 0.105039 AGCGACCTCCGATGAAATCC 59.895 55.000 0.00 0.00 41.39 3.01
157 158 5.203528 ACCTCCGATGAAATCCATGATTTT 58.796 37.500 0.00 0.00 41.56 1.82
160 161 6.488006 CCTCCGATGAAATCCATGATTTTACT 59.512 38.462 0.00 0.00 41.56 2.24
215 217 1.481363 GGGGGATATAGTAGCGAAGGC 59.519 57.143 0.00 0.00 40.37 4.35
254 256 2.831770 CATAGGGTGATGCCGGCT 59.168 61.111 29.70 13.55 38.44 5.52
328 336 4.399303 AGAACCTGCATATGTTAAACTGGC 59.601 41.667 4.29 0.00 0.00 4.85
414 422 1.826385 CAAACATGAGGTGGGAGGAC 58.174 55.000 0.00 0.00 0.00 3.85
422 430 1.212934 AGGTGGGAGGACGAGTAGGA 61.213 60.000 0.00 0.00 0.00 2.94
429 437 3.349022 GGAGGACGAGTAGGATAGGATG 58.651 54.545 0.00 0.00 0.00 3.51
443 456 0.325296 AGGATGGGACCTAGCACGAA 60.325 55.000 0.00 0.00 38.65 3.85
444 457 0.105039 GGATGGGACCTAGCACGAAG 59.895 60.000 0.00 0.00 0.00 3.79
445 458 0.530870 GATGGGACCTAGCACGAAGC 60.531 60.000 0.00 0.00 46.19 3.86
513 526 4.379243 CTTGCTCTCCGGGTGCGT 62.379 66.667 0.00 0.00 37.26 5.24
514 527 4.680237 TTGCTCTCCGGGTGCGTG 62.680 66.667 0.00 0.00 37.26 5.34
526 539 4.994471 TGCGTGCCTGACCAGCAG 62.994 66.667 0.00 0.00 41.87 4.24
533 546 4.767255 CTGACCAGCAGCCCCGTC 62.767 72.222 0.00 0.00 37.90 4.79
676 689 2.592212 CTTTGGCAGCAACAAACGG 58.408 52.632 0.00 0.00 34.43 4.44
690 706 0.324943 AAACGGGTGAGGTCCAGATG 59.675 55.000 0.00 0.00 0.00 2.90
691 707 0.836400 AACGGGTGAGGTCCAGATGT 60.836 55.000 0.00 0.00 0.00 3.06
692 708 0.040646 ACGGGTGAGGTCCAGATGTA 59.959 55.000 0.00 0.00 0.00 2.29
693 709 0.747255 CGGGTGAGGTCCAGATGTAG 59.253 60.000 0.00 0.00 0.00 2.74
694 710 1.685180 CGGGTGAGGTCCAGATGTAGA 60.685 57.143 0.00 0.00 0.00 2.59
812 843 4.489771 CGAGGAAGCCCGGCCATT 62.490 66.667 5.55 0.00 37.58 3.16
813 844 2.517166 GAGGAAGCCCGGCCATTC 60.517 66.667 5.55 4.21 37.58 2.67
814 845 4.129148 AGGAAGCCCGGCCATTCC 62.129 66.667 18.69 18.69 42.37 3.01
850 883 5.594317 GCCTGCCCTTCTTCATTAAAATCTA 59.406 40.000 0.00 0.00 0.00 1.98
852 885 7.522889 GCCTGCCCTTCTTCATTAAAATCTATC 60.523 40.741 0.00 0.00 0.00 2.08
862 895 7.297936 TCATTAAAATCTATCGCTAGACCCA 57.702 36.000 0.00 0.00 36.81 4.51
864 897 9.031537 TCATTAAAATCTATCGCTAGACCCATA 57.968 33.333 0.00 0.00 36.81 2.74
910 1057 2.797278 GGTCGCATGGGTCTCCGAT 61.797 63.158 9.86 0.00 35.24 4.18
978 1125 4.833380 TCCCTTCTTCTTCTTCTTCTTCGA 59.167 41.667 0.00 0.00 0.00 3.71
1032 1367 3.392285 TCGATCTGAATCAACCCATCCAT 59.608 43.478 0.00 0.00 31.76 3.41
1302 1642 4.031418 TGTTCATGTTCTTGCAGTTGTG 57.969 40.909 0.00 0.00 0.00 3.33
1369 1710 2.719531 TCAGTTAGGGTTTGTGCACA 57.280 45.000 17.42 17.42 0.00 4.57
1393 1742 4.949238 TCTGTTTAGTTGTGCATGCCATAT 59.051 37.500 16.68 6.99 0.00 1.78
1400 1749 2.425539 TGTGCATGCCATATATGTCCG 58.574 47.619 16.68 0.00 0.00 4.79
1435 1805 8.833231 TGATTTCTTCGTAAAATCAGAGTTCT 57.167 30.769 14.25 0.00 44.21 3.01
1443 1813 8.294341 TCGTAAAATCAGAGTTCTGTTTGTAG 57.706 34.615 8.85 2.78 44.12 2.74
1444 1814 8.139350 TCGTAAAATCAGAGTTCTGTTTGTAGA 58.861 33.333 8.85 4.54 44.12 2.59
1525 1895 1.133513 TGACAGGGCACAAGAAACCAT 60.134 47.619 0.00 0.00 0.00 3.55
1585 1955 5.570344 TGTCGAATTTACTTGCGAAAACAA 58.430 33.333 0.00 0.00 34.29 2.83
1744 2118 1.586422 GCATTCCATCGAGCAGCTTA 58.414 50.000 0.00 0.00 0.00 3.09
2512 5961 0.463474 GGCTGGACAAGAGGATGAGC 60.463 60.000 0.00 0.00 0.00 4.26
2907 6365 3.059868 CGCGTTATCGATTAGGCACAAAT 60.060 43.478 23.64 0.00 39.71 2.32
2993 6451 5.589452 TGGTGGTTTTGTGTAAATAACTCGT 59.411 36.000 0.00 0.00 0.00 4.18
2994 6452 6.095160 TGGTGGTTTTGTGTAAATAACTCGTT 59.905 34.615 0.00 0.00 0.00 3.85
2995 6453 6.974048 GGTGGTTTTGTGTAAATAACTCGTTT 59.026 34.615 0.00 0.00 0.00 3.60
2996 6454 7.043920 GGTGGTTTTGTGTAAATAACTCGTTTG 60.044 37.037 0.00 0.00 0.00 2.93
2997 6455 7.485595 GTGGTTTTGTGTAAATAACTCGTTTGT 59.514 33.333 0.00 0.00 0.00 2.83
2998 6456 8.671921 TGGTTTTGTGTAAATAACTCGTTTGTA 58.328 29.630 0.00 0.00 0.00 2.41
2999 6457 9.161684 GGTTTTGTGTAAATAACTCGTTTGTAG 57.838 33.333 0.00 0.00 0.00 2.74
3000 6458 9.919348 GTTTTGTGTAAATAACTCGTTTGTAGA 57.081 29.630 0.00 0.00 0.00 2.59
3034 6492 6.530913 TTTCTCGAATATGCTATTGTCAGC 57.469 37.500 0.00 0.00 42.15 4.26
3035 6493 4.229876 TCTCGAATATGCTATTGTCAGCG 58.770 43.478 0.00 0.00 44.88 5.18
3036 6494 3.977427 TCGAATATGCTATTGTCAGCGT 58.023 40.909 0.00 0.00 44.88 5.07
3037 6495 5.048991 TCTCGAATATGCTATTGTCAGCGTA 60.049 40.000 0.00 0.00 44.82 4.42
3043 6501 5.602458 ATGCTATTGTCAGCGTATCATTG 57.398 39.130 0.00 0.00 44.88 2.82
3044 6502 3.248363 TGCTATTGTCAGCGTATCATTGC 59.752 43.478 0.00 0.00 44.88 3.56
3045 6503 3.248363 GCTATTGTCAGCGTATCATTGCA 59.752 43.478 0.00 0.00 0.00 4.08
3046 6504 4.083643 GCTATTGTCAGCGTATCATTGCAT 60.084 41.667 0.00 0.00 0.00 3.96
3047 6505 4.906065 ATTGTCAGCGTATCATTGCATT 57.094 36.364 0.00 0.00 0.00 3.56
3048 6506 3.678915 TGTCAGCGTATCATTGCATTG 57.321 42.857 2.08 2.08 0.00 2.82
3049 6507 3.269178 TGTCAGCGTATCATTGCATTGA 58.731 40.909 13.30 13.30 0.00 2.57
3050 6508 3.878699 TGTCAGCGTATCATTGCATTGAT 59.121 39.130 23.42 23.42 39.60 2.57
3051 6509 5.055812 TGTCAGCGTATCATTGCATTGATA 58.944 37.500 21.66 21.66 37.51 2.15
3052 6510 5.178067 TGTCAGCGTATCATTGCATTGATAG 59.822 40.000 24.60 19.64 38.83 2.08
3053 6511 5.406477 GTCAGCGTATCATTGCATTGATAGA 59.594 40.000 24.60 17.51 38.83 1.98
3054 6512 5.990996 TCAGCGTATCATTGCATTGATAGAA 59.009 36.000 24.60 9.27 38.83 2.10
3055 6513 6.146673 TCAGCGTATCATTGCATTGATAGAAG 59.853 38.462 24.60 19.93 38.83 2.85
3056 6514 5.410746 AGCGTATCATTGCATTGATAGAAGG 59.589 40.000 24.60 15.64 38.83 3.46
3057 6515 5.391310 GCGTATCATTGCATTGATAGAAGGG 60.391 44.000 24.60 15.24 38.83 3.95
3058 6516 5.122869 CGTATCATTGCATTGATAGAAGGGG 59.877 44.000 24.60 11.03 38.83 4.79
3059 6517 4.524802 TCATTGCATTGATAGAAGGGGT 57.475 40.909 7.19 0.00 0.00 4.95
3060 6518 4.870636 TCATTGCATTGATAGAAGGGGTT 58.129 39.130 7.19 0.00 0.00 4.11
3061 6519 5.271598 TCATTGCATTGATAGAAGGGGTTT 58.728 37.500 7.19 0.00 0.00 3.27
3062 6520 5.360714 TCATTGCATTGATAGAAGGGGTTTC 59.639 40.000 7.19 0.00 35.97 2.78
3063 6521 4.314522 TGCATTGATAGAAGGGGTTTCA 57.685 40.909 0.00 0.00 38.31 2.69
3064 6522 4.671831 TGCATTGATAGAAGGGGTTTCAA 58.328 39.130 0.00 0.00 38.31 2.69
3065 6523 4.462483 TGCATTGATAGAAGGGGTTTCAAC 59.538 41.667 0.00 0.00 38.31 3.18
3066 6524 4.462483 GCATTGATAGAAGGGGTTTCAACA 59.538 41.667 0.00 0.00 38.31 3.33
3067 6525 5.127682 GCATTGATAGAAGGGGTTTCAACAT 59.872 40.000 0.00 0.00 38.31 2.71
3068 6526 6.321181 GCATTGATAGAAGGGGTTTCAACATA 59.679 38.462 0.00 0.00 38.31 2.29
3069 6527 7.682021 GCATTGATAGAAGGGGTTTCAACATAC 60.682 40.741 0.00 0.00 38.31 2.39
3070 6528 6.381498 TGATAGAAGGGGTTTCAACATACA 57.619 37.500 0.00 0.00 38.31 2.29
3071 6529 6.414732 TGATAGAAGGGGTTTCAACATACAG 58.585 40.000 0.00 0.00 38.31 2.74
3072 6530 4.993705 AGAAGGGGTTTCAACATACAGA 57.006 40.909 0.00 0.00 38.31 3.41
3073 6531 4.911390 AGAAGGGGTTTCAACATACAGAG 58.089 43.478 0.00 0.00 38.31 3.35
3074 6532 4.351111 AGAAGGGGTTTCAACATACAGAGT 59.649 41.667 0.00 0.00 38.31 3.24
3075 6533 4.021102 AGGGGTTTCAACATACAGAGTG 57.979 45.455 0.00 0.00 0.00 3.51
3076 6534 3.081804 GGGGTTTCAACATACAGAGTGG 58.918 50.000 0.00 0.00 0.00 4.00
3077 6535 2.488153 GGGTTTCAACATACAGAGTGGC 59.512 50.000 0.00 0.00 0.00 5.01
3078 6536 3.146066 GGTTTCAACATACAGAGTGGCA 58.854 45.455 0.00 0.00 0.00 4.92
3079 6537 3.758554 GGTTTCAACATACAGAGTGGCAT 59.241 43.478 0.00 0.00 0.00 4.40
3080 6538 4.142600 GGTTTCAACATACAGAGTGGCATC 60.143 45.833 0.00 0.00 0.00 3.91
3081 6539 2.892374 TCAACATACAGAGTGGCATCG 58.108 47.619 0.00 0.00 0.00 3.84
3082 6540 2.233676 TCAACATACAGAGTGGCATCGT 59.766 45.455 0.00 0.00 0.00 3.73
3083 6541 2.299993 ACATACAGAGTGGCATCGTG 57.700 50.000 0.00 0.00 0.00 4.35
3084 6542 1.134699 ACATACAGAGTGGCATCGTGG 60.135 52.381 0.00 0.00 0.00 4.94
3085 6543 1.134699 CATACAGAGTGGCATCGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
3086 6544 0.530744 TACAGAGTGGCATCGTGGTC 59.469 55.000 0.00 0.00 0.00 4.02
3087 6545 1.293179 CAGAGTGGCATCGTGGTCA 59.707 57.895 0.00 0.00 0.00 4.02
3088 6546 1.016130 CAGAGTGGCATCGTGGTCAC 61.016 60.000 5.83 5.83 43.60 3.67
3106 6564 4.068302 GTACACTACGAGGCGTGC 57.932 61.111 2.33 0.00 41.39 5.34
3107 6565 1.210931 GTACACTACGAGGCGTGCA 59.789 57.895 2.33 0.00 41.39 4.57
3108 6566 1.069378 GTACACTACGAGGCGTGCAC 61.069 60.000 6.82 6.82 41.39 4.57
3109 6567 1.517210 TACACTACGAGGCGTGCACA 61.517 55.000 18.64 0.00 41.39 4.57
3110 6568 2.049433 ACTACGAGGCGTGCACAC 60.049 61.111 18.64 7.05 41.39 3.82
3123 6581 3.980238 GTGCACACGATACAAAGAGAG 57.020 47.619 13.17 0.00 0.00 3.20
3124 6582 2.668457 GTGCACACGATACAAAGAGAGG 59.332 50.000 13.17 0.00 0.00 3.69
3125 6583 2.271800 GCACACGATACAAAGAGAGGG 58.728 52.381 0.00 0.00 0.00 4.30
3126 6584 2.893637 CACACGATACAAAGAGAGGGG 58.106 52.381 0.00 0.00 0.00 4.79
3127 6585 2.233922 CACACGATACAAAGAGAGGGGT 59.766 50.000 0.00 0.00 0.00 4.95
3128 6586 2.904434 ACACGATACAAAGAGAGGGGTT 59.096 45.455 0.00 0.00 0.00 4.11
3129 6587 3.326880 ACACGATACAAAGAGAGGGGTTT 59.673 43.478 0.00 0.00 0.00 3.27
3130 6588 3.684788 CACGATACAAAGAGAGGGGTTTG 59.315 47.826 0.00 0.00 39.19 2.93
3131 6589 3.326880 ACGATACAAAGAGAGGGGTTTGT 59.673 43.478 5.82 5.82 46.20 2.83
3133 6591 5.109903 CGATACAAAGAGAGGGGTTTGTAG 58.890 45.833 11.91 0.00 46.79 2.74
3134 6592 5.105473 CGATACAAAGAGAGGGGTTTGTAGA 60.105 44.000 11.91 0.00 46.79 2.59
3135 6593 6.407074 CGATACAAAGAGAGGGGTTTGTAGAT 60.407 42.308 11.91 0.05 46.79 1.98
3157 6615 7.318141 AGATTACTTTGAATGGTGCAATTGAG 58.682 34.615 10.34 0.00 0.00 3.02
3295 6753 4.039609 TGCATGATGCTACTGCTGTATACT 59.960 41.667 19.19 0.00 45.31 2.12
3308 6820 8.455903 ACTGCTGTATACTCAATTAATTGCAT 57.544 30.769 21.15 15.71 37.68 3.96
3375 6887 8.766994 ACCCAAATAATCTGTATTGCTATTGT 57.233 30.769 0.00 0.00 0.00 2.71
3384 6896 7.686438 TCTGTATTGCTATTGTTCACAACAT 57.314 32.000 0.00 0.00 41.79 2.71
3385 6897 7.529158 TCTGTATTGCTATTGTTCACAACATG 58.471 34.615 0.00 0.00 41.79 3.21
3387 6899 7.304735 TGTATTGCTATTGTTCACAACATGTC 58.695 34.615 0.00 0.00 41.79 3.06
3389 6901 5.611796 TGCTATTGTTCACAACATGTCTC 57.388 39.130 0.00 0.00 41.79 3.36
3390 6902 5.062528 TGCTATTGTTCACAACATGTCTCA 58.937 37.500 0.00 0.00 41.79 3.27
3391 6903 5.179929 TGCTATTGTTCACAACATGTCTCAG 59.820 40.000 0.00 0.00 41.79 3.35
3441 6955 9.071276 ACTTTTGGTAGAATTATATGATGCCTG 57.929 33.333 0.00 0.00 0.00 4.85
3477 6991 3.245990 GCTTGTGCTTCCATTTTGTTCAC 59.754 43.478 0.00 0.00 36.03 3.18
3478 6992 4.431809 CTTGTGCTTCCATTTTGTTCACA 58.568 39.130 0.00 0.00 0.00 3.58
3479 6993 4.044336 TGTGCTTCCATTTTGTTCACAG 57.956 40.909 0.00 0.00 0.00 3.66
3482 6996 3.068024 TGCTTCCATTTTGTTCACAGACC 59.932 43.478 0.00 0.00 0.00 3.85
3483 6997 3.068024 GCTTCCATTTTGTTCACAGACCA 59.932 43.478 0.00 0.00 0.00 4.02
3484 6998 4.794003 GCTTCCATTTTGTTCACAGACCAG 60.794 45.833 0.00 0.00 0.00 4.00
3486 7000 4.728772 TCCATTTTGTTCACAGACCAGAT 58.271 39.130 0.00 0.00 0.00 2.90
3487 7001 5.139727 TCCATTTTGTTCACAGACCAGATT 58.860 37.500 0.00 0.00 0.00 2.40
3488 7002 5.009911 TCCATTTTGTTCACAGACCAGATTG 59.990 40.000 0.00 0.00 0.00 2.67
3491 7005 1.069978 TGTTCACAGACCAGATTGCGA 59.930 47.619 0.00 0.00 0.00 5.10
3493 7007 1.795768 TCACAGACCAGATTGCGAAC 58.204 50.000 0.00 0.00 0.00 3.95
3494 7008 1.069978 TCACAGACCAGATTGCGAACA 59.930 47.619 0.00 0.00 0.00 3.18
3495 7009 1.462283 CACAGACCAGATTGCGAACAG 59.538 52.381 0.00 0.00 0.00 3.16
3496 7010 1.344438 ACAGACCAGATTGCGAACAGA 59.656 47.619 0.00 0.00 0.00 3.41
3498 7012 2.414481 CAGACCAGATTGCGAACAGAAG 59.586 50.000 0.00 0.00 0.00 2.85
3499 7013 1.734465 GACCAGATTGCGAACAGAAGG 59.266 52.381 0.00 0.00 0.00 3.46
3500 7014 0.449388 CCAGATTGCGAACAGAAGGC 59.551 55.000 0.00 0.00 0.00 4.35
3501 7015 0.095935 CAGATTGCGAACAGAAGGCG 59.904 55.000 0.00 0.00 0.00 5.52
3522 7038 0.672342 AGGACGCCGTCACATATACC 59.328 55.000 20.08 0.00 33.68 2.73
3534 7050 5.440685 GTCACATATACCGCATGCTTTTAC 58.559 41.667 17.13 0.00 0.00 2.01
3535 7051 5.007234 GTCACATATACCGCATGCTTTTACA 59.993 40.000 17.13 0.00 0.00 2.41
3536 7052 5.236263 TCACATATACCGCATGCTTTTACAG 59.764 40.000 17.13 3.62 0.00 2.74
3537 7053 5.236263 CACATATACCGCATGCTTTTACAGA 59.764 40.000 17.13 0.00 0.00 3.41
3538 7054 5.466728 ACATATACCGCATGCTTTTACAGAG 59.533 40.000 17.13 0.00 0.00 3.35
3539 7055 1.453155 ACCGCATGCTTTTACAGAGG 58.547 50.000 17.13 8.51 0.00 3.69
3540 7056 1.003118 ACCGCATGCTTTTACAGAGGA 59.997 47.619 17.13 0.00 0.00 3.71
3542 7058 2.159517 CCGCATGCTTTTACAGAGGAAC 60.160 50.000 17.13 0.00 0.00 3.62
3543 7059 2.474526 CGCATGCTTTTACAGAGGAACG 60.475 50.000 17.13 0.00 0.00 3.95
3545 7061 1.519408 TGCTTTTACAGAGGAACGGC 58.481 50.000 0.00 0.00 0.00 5.68
3546 7062 0.442699 GCTTTTACAGAGGAACGGCG 59.557 55.000 4.80 4.80 0.00 6.46
3547 7063 0.442699 CTTTTACAGAGGAACGGCGC 59.557 55.000 6.90 0.00 0.00 6.53
3548 7064 1.286354 TTTTACAGAGGAACGGCGCG 61.286 55.000 6.90 0.00 0.00 6.86
3549 7065 4.789075 TACAGAGGAACGGCGCGC 62.789 66.667 25.94 25.94 0.00 6.86
3573 7098 3.309954 GTGGAATTATGAAGCGTGGAGTC 59.690 47.826 0.00 0.00 0.00 3.36
3574 7099 3.055458 TGGAATTATGAAGCGTGGAGTCA 60.055 43.478 0.00 0.00 0.00 3.41
3575 7100 3.557595 GGAATTATGAAGCGTGGAGTCAG 59.442 47.826 0.00 0.00 0.00 3.51
3576 7101 3.895232 ATTATGAAGCGTGGAGTCAGT 57.105 42.857 0.00 0.00 0.00 3.41
3577 7102 5.339008 AATTATGAAGCGTGGAGTCAGTA 57.661 39.130 0.00 0.00 0.00 2.74
3578 7103 2.949451 ATGAAGCGTGGAGTCAGTAG 57.051 50.000 0.00 0.00 0.00 2.57
3579 7104 1.905637 TGAAGCGTGGAGTCAGTAGA 58.094 50.000 0.00 0.00 0.00 2.59
3580 7105 1.813178 TGAAGCGTGGAGTCAGTAGAG 59.187 52.381 0.00 0.00 0.00 2.43
3581 7106 0.528470 AAGCGTGGAGTCAGTAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
3582 7107 1.139947 GCGTGGAGTCAGTAGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
3583 7108 1.429825 CGTGGAGTCAGTAGAGCCG 59.570 63.158 0.00 0.00 0.00 5.52
3584 7109 1.306642 CGTGGAGTCAGTAGAGCCGT 61.307 60.000 0.00 0.00 0.00 5.68
3585 7110 0.171455 GTGGAGTCAGTAGAGCCGTG 59.829 60.000 0.00 0.00 0.00 4.94
3586 7111 0.251209 TGGAGTCAGTAGAGCCGTGT 60.251 55.000 0.00 0.00 0.00 4.49
3587 7112 0.452585 GGAGTCAGTAGAGCCGTGTC 59.547 60.000 0.00 0.00 0.00 3.67
3588 7113 0.097325 GAGTCAGTAGAGCCGTGTCG 59.903 60.000 0.00 0.00 0.00 4.35
3600 7125 2.776072 GTGTCGGACGAAATGCGG 59.224 61.111 3.34 0.00 46.49 5.69
3601 7126 2.433491 TGTCGGACGAAATGCGGG 60.433 61.111 3.34 0.00 46.49 6.13
3602 7127 2.433664 GTCGGACGAAATGCGGGT 60.434 61.111 0.00 0.00 46.49 5.28
3603 7128 2.433491 TCGGACGAAATGCGGGTG 60.433 61.111 0.00 0.00 46.49 4.61
3604 7129 4.160635 CGGACGAAATGCGGGTGC 62.161 66.667 0.00 0.00 46.49 5.01
3605 7130 3.810896 GGACGAAATGCGGGTGCC 61.811 66.667 0.00 0.00 46.49 5.01
3606 7131 2.746277 GACGAAATGCGGGTGCCT 60.746 61.111 0.00 0.00 46.49 4.75
3607 7132 3.039202 GACGAAATGCGGGTGCCTG 62.039 63.158 0.00 0.00 46.49 4.85
3608 7133 3.055719 CGAAATGCGGGTGCCTGT 61.056 61.111 0.00 0.00 41.78 4.00
3609 7134 2.568090 GAAATGCGGGTGCCTGTG 59.432 61.111 0.00 0.00 41.78 3.66
3610 7135 1.971167 GAAATGCGGGTGCCTGTGA 60.971 57.895 0.00 0.00 41.78 3.58
3611 7136 1.926511 GAAATGCGGGTGCCTGTGAG 61.927 60.000 0.00 0.00 41.78 3.51
3612 7137 3.925630 AATGCGGGTGCCTGTGAGG 62.926 63.158 0.00 0.00 41.78 3.86
3615 7140 4.394712 CGGGTGCCTGTGAGGGTC 62.395 72.222 0.00 0.00 35.37 4.46
3616 7141 4.394712 GGGTGCCTGTGAGGGTCG 62.395 72.222 0.00 0.00 35.37 4.79
3617 7142 3.626924 GGTGCCTGTGAGGGTCGT 61.627 66.667 0.00 0.00 35.37 4.34
3618 7143 2.357517 GTGCCTGTGAGGGTCGTG 60.358 66.667 0.00 0.00 35.37 4.35
3619 7144 4.314440 TGCCTGTGAGGGTCGTGC 62.314 66.667 0.00 0.00 35.37 5.34
3620 7145 4.314440 GCCTGTGAGGGTCGTGCA 62.314 66.667 0.00 0.00 35.37 4.57
3632 7157 1.069596 TCGTGCAGCGCATATGGAT 59.930 52.632 11.47 0.00 41.91 3.41
3643 7168 1.091771 CATATGGATGATCGGGCGCC 61.092 60.000 21.18 21.18 34.73 6.53
3668 7193 0.393808 GGTGGAATACATGCCGTGGT 60.394 55.000 0.00 0.00 0.00 4.16
3677 7202 1.073025 ATGCCGTGGTGAGCAAGAA 59.927 52.632 0.00 0.00 43.36 2.52
3718 7243 3.015145 GGGTGGAGCTTGGCCCTA 61.015 66.667 0.00 0.00 38.12 3.53
3720 7245 1.382629 GGTGGAGCTTGGCCCTAAA 59.617 57.895 0.00 0.00 0.00 1.85
3735 7260 1.479323 CCTAAAGCTGTACGTGGGCTA 59.521 52.381 11.05 0.00 35.06 3.93
3834 7359 1.809684 AAGAAGGTAAACTGAGGCGC 58.190 50.000 0.00 0.00 0.00 6.53
3864 7389 6.219473 CGAATAATCTCATCAAGCCTACTGT 58.781 40.000 0.00 0.00 0.00 3.55
4055 7580 3.871594 GCTTCGCTTATGGTGTCAGTAAT 59.128 43.478 0.00 0.00 0.00 1.89
4066 7591 5.812652 TGGTGTCAGTAATCGAACAAAAAC 58.187 37.500 0.00 0.00 0.00 2.43
4070 7595 5.912396 TGTCAGTAATCGAACAAAAACATGC 59.088 36.000 0.00 0.00 0.00 4.06
4090 7615 2.801342 GCAAGGACTCGATCAGCTTAGG 60.801 54.545 0.00 0.00 0.00 2.69
4118 7643 5.833667 TCTCTCACAAGATGGATTATACGGT 59.166 40.000 0.00 0.00 0.00 4.83
4150 7675 1.939113 CCCAGGAGGCTAGTCCCTA 59.061 63.158 4.30 0.00 37.31 3.53
4155 7680 2.085934 AGGAGGCTAGTCCCTATGGAT 58.914 52.381 2.83 0.00 44.28 3.41
4158 7683 1.509961 AGGCTAGTCCCTATGGATGGT 59.490 52.381 0.00 0.00 44.28 3.55
4175 7700 2.238521 TGGTCAGATGGTTTTGGAAGC 58.761 47.619 0.00 0.00 0.00 3.86
4228 7753 8.827677 GCGTATTATGATCCTGGTATAATTTCC 58.172 37.037 14.13 0.00 31.50 3.13
4249 7774 2.095668 CGTTCACGTCTTCTCTGCTACT 60.096 50.000 0.00 0.00 34.11 2.57
4251 7776 2.779506 TCACGTCTTCTCTGCTACTGA 58.220 47.619 0.00 0.00 0.00 3.41
4252 7777 3.348119 TCACGTCTTCTCTGCTACTGAT 58.652 45.455 0.00 0.00 0.00 2.90
4253 7778 3.759086 TCACGTCTTCTCTGCTACTGATT 59.241 43.478 0.00 0.00 0.00 2.57
4254 7779 4.941873 TCACGTCTTCTCTGCTACTGATTA 59.058 41.667 0.00 0.00 0.00 1.75
4281 7806 8.585471 ATTATATTAGGCATTCTTGTGGGATG 57.415 34.615 0.00 0.00 0.00 3.51
4282 7807 2.057137 TAGGCATTCTTGTGGGATGC 57.943 50.000 0.63 0.63 37.51 3.91
4436 7978 9.838975 TTTTTCATTTTCTCTTTTGCTTTTTCC 57.161 25.926 0.00 0.00 0.00 3.13
4437 7979 7.552458 TTCATTTTCTCTTTTGCTTTTTCCC 57.448 32.000 0.00 0.00 0.00 3.97
4438 7980 6.054941 TCATTTTCTCTTTTGCTTTTTCCCC 58.945 36.000 0.00 0.00 0.00 4.81
4439 7981 4.415881 TTTCTCTTTTGCTTTTTCCCCC 57.584 40.909 0.00 0.00 0.00 5.40
4440 7982 3.328535 TCTCTTTTGCTTTTTCCCCCT 57.671 42.857 0.00 0.00 0.00 4.79
4441 7983 3.230976 TCTCTTTTGCTTTTTCCCCCTC 58.769 45.455 0.00 0.00 0.00 4.30
4442 7984 2.300152 CTCTTTTGCTTTTTCCCCCTCC 59.700 50.000 0.00 0.00 0.00 4.30
4443 7985 2.046292 CTTTTGCTTTTTCCCCCTCCA 58.954 47.619 0.00 0.00 0.00 3.86
4444 7986 2.414250 TTTGCTTTTTCCCCCTCCAT 57.586 45.000 0.00 0.00 0.00 3.41
4445 7987 2.414250 TTGCTTTTTCCCCCTCCATT 57.586 45.000 0.00 0.00 0.00 3.16
4446 7988 1.643310 TGCTTTTTCCCCCTCCATTG 58.357 50.000 0.00 0.00 0.00 2.82
4447 7989 1.132881 TGCTTTTTCCCCCTCCATTGT 60.133 47.619 0.00 0.00 0.00 2.71
4448 7990 2.110899 TGCTTTTTCCCCCTCCATTGTA 59.889 45.455 0.00 0.00 0.00 2.41
4449 7991 2.496070 GCTTTTTCCCCCTCCATTGTAC 59.504 50.000 0.00 0.00 0.00 2.90
4450 7992 3.773560 CTTTTTCCCCCTCCATTGTACA 58.226 45.455 0.00 0.00 0.00 2.90
4451 7993 3.905493 TTTTCCCCCTCCATTGTACAA 57.095 42.857 11.41 11.41 0.00 2.41
4452 7994 4.412060 TTTTCCCCCTCCATTGTACAAT 57.588 40.909 15.47 15.47 0.00 2.71
4453 7995 4.412060 TTTCCCCCTCCATTGTACAATT 57.588 40.909 18.50 1.72 0.00 2.32
4454 7996 4.412060 TTCCCCCTCCATTGTACAATTT 57.588 40.909 18.50 0.00 0.00 1.82
4455 7997 5.538082 TTCCCCCTCCATTGTACAATTTA 57.462 39.130 18.50 8.66 0.00 1.40
4456 7998 5.538082 TCCCCCTCCATTGTACAATTTAA 57.462 39.130 18.50 6.29 0.00 1.52
4457 7999 5.265989 TCCCCCTCCATTGTACAATTTAAC 58.734 41.667 18.50 0.00 0.00 2.01
4458 8000 5.020132 CCCCCTCCATTGTACAATTTAACA 58.980 41.667 18.50 0.69 0.00 2.41
4459 8001 5.482175 CCCCCTCCATTGTACAATTTAACAA 59.518 40.000 18.50 5.14 39.73 2.83
4460 8002 6.156083 CCCCCTCCATTGTACAATTTAACAAT 59.844 38.462 18.50 8.65 44.94 2.71
4461 8003 7.310983 CCCCCTCCATTGTACAATTTAACAATT 60.311 37.037 18.50 0.00 42.22 2.32
4462 8004 8.100164 CCCCTCCATTGTACAATTTAACAATTT 58.900 33.333 18.50 0.00 42.22 1.82
4463 8005 9.500785 CCCTCCATTGTACAATTTAACAATTTT 57.499 29.630 18.50 0.00 42.22 1.82
4486 8028 7.985634 TTTTCGTCTTCCATTTTCTCTTTTG 57.014 32.000 0.00 0.00 0.00 2.44
4487 8029 5.108385 TCGTCTTCCATTTTCTCTTTTGC 57.892 39.130 0.00 0.00 0.00 3.68
4488 8030 4.023193 TCGTCTTCCATTTTCTCTTTTGCC 60.023 41.667 0.00 0.00 0.00 4.52
4489 8031 4.022849 CGTCTTCCATTTTCTCTTTTGCCT 60.023 41.667 0.00 0.00 0.00 4.75
4490 8032 5.507985 CGTCTTCCATTTTCTCTTTTGCCTT 60.508 40.000 0.00 0.00 0.00 4.35
4491 8033 6.283694 GTCTTCCATTTTCTCTTTTGCCTTT 58.716 36.000 0.00 0.00 0.00 3.11
4492 8034 6.763135 GTCTTCCATTTTCTCTTTTGCCTTTT 59.237 34.615 0.00 0.00 0.00 2.27
4493 8035 6.986231 TCTTCCATTTTCTCTTTTGCCTTTTC 59.014 34.615 0.00 0.00 0.00 2.29
4494 8036 5.610398 TCCATTTTCTCTTTTGCCTTTTCC 58.390 37.500 0.00 0.00 0.00 3.13
4495 8037 4.756642 CCATTTTCTCTTTTGCCTTTTCCC 59.243 41.667 0.00 0.00 0.00 3.97
4496 8038 4.415881 TTTTCTCTTTTGCCTTTTCCCC 57.584 40.909 0.00 0.00 0.00 4.81
4497 8039 2.009681 TCTCTTTTGCCTTTTCCCCC 57.990 50.000 0.00 0.00 0.00 5.40
4498 8040 1.503347 TCTCTTTTGCCTTTTCCCCCT 59.497 47.619 0.00 0.00 0.00 4.79
4499 8041 1.895798 CTCTTTTGCCTTTTCCCCCTC 59.104 52.381 0.00 0.00 0.00 4.30
4500 8042 0.976641 CTTTTGCCTTTTCCCCCTCC 59.023 55.000 0.00 0.00 0.00 4.30
4501 8043 0.266152 TTTTGCCTTTTCCCCCTCCA 59.734 50.000 0.00 0.00 0.00 3.86
4502 8044 0.491371 TTTGCCTTTTCCCCCTCCAT 59.509 50.000 0.00 0.00 0.00 3.41
4503 8045 0.491371 TTGCCTTTTCCCCCTCCATT 59.509 50.000 0.00 0.00 0.00 3.16
4504 8046 0.252193 TGCCTTTTCCCCCTCCATTG 60.252 55.000 0.00 0.00 0.00 2.82
4505 8047 0.252239 GCCTTTTCCCCCTCCATTGT 60.252 55.000 0.00 0.00 0.00 2.71
4506 8048 1.006639 GCCTTTTCCCCCTCCATTGTA 59.993 52.381 0.00 0.00 0.00 2.41
4507 8049 2.735151 CCTTTTCCCCCTCCATTGTAC 58.265 52.381 0.00 0.00 0.00 2.90
4508 8050 2.042433 CCTTTTCCCCCTCCATTGTACA 59.958 50.000 0.00 0.00 0.00 2.90
4509 8051 3.501385 CCTTTTCCCCCTCCATTGTACAA 60.501 47.826 11.41 11.41 0.00 2.41
4510 8052 4.352893 CTTTTCCCCCTCCATTGTACAAT 58.647 43.478 15.47 15.47 0.00 2.71
4511 8053 4.412060 TTTCCCCCTCCATTGTACAATT 57.588 40.909 18.50 1.72 0.00 2.32
4512 8054 4.412060 TTCCCCCTCCATTGTACAATTT 57.588 40.909 18.50 0.00 0.00 1.82
4513 8055 5.538082 TTCCCCCTCCATTGTACAATTTA 57.462 39.130 18.50 8.66 0.00 1.40
4514 8056 5.538082 TCCCCCTCCATTGTACAATTTAA 57.462 39.130 18.50 6.29 0.00 1.52
4515 8057 5.265989 TCCCCCTCCATTGTACAATTTAAC 58.734 41.667 18.50 0.00 0.00 2.01
4516 8058 5.020132 CCCCCTCCATTGTACAATTTAACA 58.980 41.667 18.50 0.69 0.00 2.41
4517 8059 5.482175 CCCCCTCCATTGTACAATTTAACAA 59.518 40.000 18.50 5.14 39.73 2.83
4518 8060 6.156083 CCCCCTCCATTGTACAATTTAACAAT 59.844 38.462 18.50 8.65 44.94 2.71
4519 8061 7.310983 CCCCCTCCATTGTACAATTTAACAATT 60.311 37.037 18.50 0.00 42.22 2.32
4520 8062 8.100164 CCCCTCCATTGTACAATTTAACAATTT 58.900 33.333 18.50 0.00 42.22 1.82
4521 8063 9.500785 CCCTCCATTGTACAATTTAACAATTTT 57.499 29.630 18.50 0.00 42.22 1.82
4600 8143 0.471022 TTCTTTTCCCCCTTGCCACC 60.471 55.000 0.00 0.00 0.00 4.61
4751 8300 3.277142 ACGAGGAACTTTGTCCAAACT 57.723 42.857 0.00 0.00 41.55 2.66
4761 8310 0.031585 TGTCCAAACTGACGACTCCG 59.968 55.000 0.00 0.00 38.11 4.63
4785 8334 6.204108 CGAAAAGAAAACAGTAAGGAAGGCTA 59.796 38.462 0.00 0.00 0.00 3.93
4787 8336 5.167303 AGAAAACAGTAAGGAAGGCTAGG 57.833 43.478 0.00 0.00 0.00 3.02
4802 8351 2.483714 GGCTAGGCTTTGATGACATCGA 60.484 50.000 9.46 6.11 0.00 3.59
4813 8362 2.278026 TGACATCGACAATGACCTCG 57.722 50.000 0.00 0.00 38.83 4.63
4815 8364 2.750712 TGACATCGACAATGACCTCGTA 59.249 45.455 0.00 0.00 38.83 3.43
4840 8389 5.457148 GTGAAGATGTCGATGATGTAGTCAC 59.543 44.000 0.00 0.00 40.28 3.67
4841 8390 5.125417 TGAAGATGTCGATGATGTAGTCACA 59.875 40.000 0.00 0.00 40.28 3.58
4843 8392 5.527033 AGATGTCGATGATGTAGTCACATG 58.473 41.667 0.00 0.00 45.58 3.21
4844 8393 4.981806 TGTCGATGATGTAGTCACATGA 57.018 40.909 0.00 0.00 45.58 3.07
4845 8394 4.672409 TGTCGATGATGTAGTCACATGAC 58.328 43.478 0.00 3.72 45.58 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 2.756691 GCATGCAGATGGCCACCA 60.757 61.111 8.16 3.21 43.89 4.17
90 91 3.896133 CCGCATGCAGATGGCCAC 61.896 66.667 19.57 1.58 43.89 5.01
91 92 4.112433 TCCGCATGCAGATGGCCA 62.112 61.111 19.57 8.56 43.89 5.36
98 99 2.749044 AAGGTGCTCCGCATGCAG 60.749 61.111 19.57 9.70 41.91 4.41
116 117 0.373716 GTCGCTCGCATTGGTTAAGG 59.626 55.000 0.00 0.00 0.00 2.69
117 118 0.373716 GGTCGCTCGCATTGGTTAAG 59.626 55.000 0.00 0.00 0.00 1.85
118 119 0.036765 AGGTCGCTCGCATTGGTTAA 60.037 50.000 0.00 0.00 0.00 2.01
119 120 0.459585 GAGGTCGCTCGCATTGGTTA 60.460 55.000 0.00 0.00 0.00 2.85
129 130 1.492720 GATTTCATCGGAGGTCGCTC 58.507 55.000 0.00 0.00 39.05 5.03
133 134 3.475566 TCATGGATTTCATCGGAGGTC 57.524 47.619 0.00 0.00 32.92 3.85
147 148 6.071447 CCAACATGGACAAGTAAAATCATGGA 60.071 38.462 0.00 0.00 40.96 3.41
148 149 6.101332 CCAACATGGACAAGTAAAATCATGG 58.899 40.000 0.00 0.00 40.96 3.66
149 150 6.690530 ACCAACATGGACAAGTAAAATCATG 58.309 36.000 2.85 0.00 40.96 3.07
157 158 3.866703 TCCAACCAACATGGACAAGTA 57.133 42.857 2.85 0.00 41.98 2.24
220 222 1.369091 ATGCATCACGGAGGAAACGC 61.369 55.000 0.00 0.00 34.00 4.84
221 223 1.860950 CTATGCATCACGGAGGAAACG 59.139 52.381 0.19 0.00 37.36 3.60
222 224 2.213499 CCTATGCATCACGGAGGAAAC 58.787 52.381 0.19 0.00 0.00 2.78
223 225 1.140852 CCCTATGCATCACGGAGGAAA 59.859 52.381 13.13 0.00 0.00 3.13
224 226 0.758734 CCCTATGCATCACGGAGGAA 59.241 55.000 13.13 0.00 0.00 3.36
225 227 0.398522 ACCCTATGCATCACGGAGGA 60.399 55.000 13.13 0.00 0.00 3.71
226 228 0.250038 CACCCTATGCATCACGGAGG 60.250 60.000 0.19 3.59 0.00 4.30
254 256 0.543410 TCTTCCAGCTACGACCCCAA 60.543 55.000 0.00 0.00 0.00 4.12
259 261 3.440228 GTTCATCTCTTCCAGCTACGAC 58.560 50.000 0.00 0.00 0.00 4.34
262 264 2.482142 CCGGTTCATCTCTTCCAGCTAC 60.482 54.545 0.00 0.00 0.00 3.58
328 336 8.265165 CATCATCCATGGATCTTGTTATAGTG 57.735 38.462 24.93 10.56 31.62 2.74
414 422 2.041891 AGGTCCCATCCTATCCTACTCG 59.958 54.545 0.00 0.00 35.87 4.18
422 430 1.147191 TCGTGCTAGGTCCCATCCTAT 59.853 52.381 0.00 0.00 39.07 2.57
429 437 1.153549 CTGCTTCGTGCTAGGTCCC 60.154 63.158 0.00 0.00 43.37 4.46
443 456 2.583441 TTGCTCCGCCACTACTGCT 61.583 57.895 0.00 0.00 0.00 4.24
444 457 2.047274 TTGCTCCGCCACTACTGC 60.047 61.111 0.00 0.00 0.00 4.40
445 458 2.094659 CGTTGCTCCGCCACTACTG 61.095 63.158 0.00 0.00 0.00 2.74
509 522 4.994471 CTGCTGGTCAGGCACGCA 62.994 66.667 0.00 0.00 39.15 5.24
516 529 4.767255 GACGGGGCTGCTGGTCAG 62.767 72.222 0.00 0.00 45.62 3.51
676 689 2.741145 ACTCTACATCTGGACCTCACC 58.259 52.381 0.00 0.00 0.00 4.02
690 706 4.871993 TCGTCGAAGATGGTTACTCTAC 57.128 45.455 0.00 0.00 45.05 2.59
691 707 4.514441 GGATCGTCGAAGATGGTTACTCTA 59.486 45.833 18.77 0.00 45.05 2.43
692 708 3.315749 GGATCGTCGAAGATGGTTACTCT 59.684 47.826 18.77 0.00 45.05 3.24
693 709 3.550436 GGGATCGTCGAAGATGGTTACTC 60.550 52.174 18.77 3.09 45.05 2.59
694 710 2.361438 GGGATCGTCGAAGATGGTTACT 59.639 50.000 18.77 0.00 45.05 2.24
759 790 0.398318 AGAAAAACGGCCTGAGCTCT 59.602 50.000 16.19 0.00 39.73 4.09
829 860 6.017109 GCGATAGATTTTAATGAAGAAGGGCA 60.017 38.462 0.00 0.00 39.76 5.36
910 1057 0.323999 AGCTTGCATTGCATGAGGGA 60.324 50.000 24.11 3.75 38.76 4.20
978 1125 1.875514 GTTTCGGACGGCTAGGTTTTT 59.124 47.619 0.00 0.00 0.00 1.94
1032 1367 0.105194 TCACACTCCCAGAGTCCCAA 60.105 55.000 0.00 0.00 41.37 4.12
1038 1373 2.157640 ATCTCCTCACACTCCCAGAG 57.842 55.000 0.00 0.00 35.52 3.35
1039 1374 2.311841 TGTATCTCCTCACACTCCCAGA 59.688 50.000 0.00 0.00 0.00 3.86
1081 1416 0.833834 ATCTCCTCTATGGCCGGTGG 60.834 60.000 1.90 1.48 35.26 4.61
1083 1418 0.833834 CCATCTCCTCTATGGCCGGT 60.834 60.000 1.90 0.00 37.67 5.28
1226 1565 2.362369 ATCACCTCCACCGCCTCTG 61.362 63.158 0.00 0.00 0.00 3.35
1227 1566 2.039624 ATCACCTCCACCGCCTCT 59.960 61.111 0.00 0.00 0.00 3.69
1302 1642 2.746277 AACGTCCGGCAATGGAGC 60.746 61.111 0.00 0.00 39.14 4.70
1369 1710 3.156293 TGGCATGCACAACTAAACAGAT 58.844 40.909 21.36 0.00 0.00 2.90
1393 1742 5.363868 AGAAATCATGAAGGAGACGGACATA 59.636 40.000 0.00 0.00 0.00 2.29
1400 1749 7.596749 TTTACGAAGAAATCATGAAGGAGAC 57.403 36.000 0.00 0.00 0.00 3.36
1435 1805 7.949903 TTGCGTAAATAACTCTCTACAAACA 57.050 32.000 0.00 0.00 0.00 2.83
1443 1813 6.741358 GTGATGGTTTTGCGTAAATAACTCTC 59.259 38.462 0.00 0.00 0.00 3.20
1444 1814 6.205853 TGTGATGGTTTTGCGTAAATAACTCT 59.794 34.615 0.00 0.00 0.00 3.24
1525 1895 0.249953 TCGGTTAGGCGCAAAGTTGA 60.250 50.000 10.83 0.00 0.00 3.18
1744 2118 0.606401 CCAAGTGTTCAGCCGTCCAT 60.606 55.000 0.00 0.00 0.00 3.41
2512 5961 2.764314 CCGCTTTCCCGCCATCAAG 61.764 63.158 0.00 0.00 0.00 3.02
2660 6113 4.834453 CCTCGCCCTGAGCAGCAG 62.834 72.222 0.00 0.00 43.82 4.24
2779 6237 1.407437 GGACAATTCGCTGAGGTGGAT 60.407 52.381 0.00 0.00 0.00 3.41
2907 6365 0.827368 GGGCACAAGAAACCACCAAA 59.173 50.000 0.00 0.00 0.00 3.28
3014 6472 3.983988 ACGCTGACAATAGCATATTCGAG 59.016 43.478 0.00 0.00 43.87 4.04
3015 6473 3.977427 ACGCTGACAATAGCATATTCGA 58.023 40.909 0.00 0.00 43.87 3.71
3016 6474 5.572896 TGATACGCTGACAATAGCATATTCG 59.427 40.000 0.00 0.00 43.87 3.34
3021 6479 4.083643 GCAATGATACGCTGACAATAGCAT 60.084 41.667 0.00 0.00 43.87 3.79
3022 6480 3.248363 GCAATGATACGCTGACAATAGCA 59.752 43.478 0.00 0.00 43.87 3.49
3023 6481 3.248363 TGCAATGATACGCTGACAATAGC 59.752 43.478 0.00 0.00 40.29 2.97
3024 6482 5.602458 ATGCAATGATACGCTGACAATAG 57.398 39.130 0.00 0.00 0.00 1.73
3027 6485 3.688673 TCAATGCAATGATACGCTGACAA 59.311 39.130 0.00 0.00 0.00 3.18
3028 6486 3.269178 TCAATGCAATGATACGCTGACA 58.731 40.909 0.00 0.00 0.00 3.58
3029 6487 3.950087 TCAATGCAATGATACGCTGAC 57.050 42.857 0.00 0.00 0.00 3.51
3030 6488 5.540911 TCTATCAATGCAATGATACGCTGA 58.459 37.500 18.52 12.32 40.44 4.26
3031 6489 5.851047 TCTATCAATGCAATGATACGCTG 57.149 39.130 18.52 10.44 40.44 5.18
3032 6490 5.410746 CCTTCTATCAATGCAATGATACGCT 59.589 40.000 18.52 0.51 40.44 5.07
3033 6491 5.391310 CCCTTCTATCAATGCAATGATACGC 60.391 44.000 18.52 0.00 40.44 4.42
3034 6492 5.122869 CCCCTTCTATCAATGCAATGATACG 59.877 44.000 18.52 14.61 40.44 3.06
3035 6493 6.006449 ACCCCTTCTATCAATGCAATGATAC 58.994 40.000 18.52 0.00 40.44 2.24
3036 6494 6.204852 ACCCCTTCTATCAATGCAATGATA 57.795 37.500 20.58 20.58 40.44 2.15
3037 6495 5.070823 ACCCCTTCTATCAATGCAATGAT 57.929 39.130 20.55 20.55 42.52 2.45
3038 6496 4.524802 ACCCCTTCTATCAATGCAATGA 57.475 40.909 6.97 6.97 0.00 2.57
3039 6497 5.127519 TGAAACCCCTTCTATCAATGCAATG 59.872 40.000 0.00 0.00 34.86 2.82
3040 6498 5.271598 TGAAACCCCTTCTATCAATGCAAT 58.728 37.500 0.00 0.00 34.86 3.56
3041 6499 4.671831 TGAAACCCCTTCTATCAATGCAA 58.328 39.130 0.00 0.00 34.86 4.08
3042 6500 4.314522 TGAAACCCCTTCTATCAATGCA 57.685 40.909 0.00 0.00 34.86 3.96
3043 6501 4.462483 TGTTGAAACCCCTTCTATCAATGC 59.538 41.667 0.00 0.00 34.86 3.56
3044 6502 6.780457 ATGTTGAAACCCCTTCTATCAATG 57.220 37.500 0.00 0.00 34.86 2.82
3045 6503 7.410174 TGTATGTTGAAACCCCTTCTATCAAT 58.590 34.615 0.00 0.00 34.86 2.57
3046 6504 6.785076 TGTATGTTGAAACCCCTTCTATCAA 58.215 36.000 0.00 0.00 34.86 2.57
3047 6505 6.214615 TCTGTATGTTGAAACCCCTTCTATCA 59.785 38.462 0.00 0.00 34.86 2.15
3048 6506 6.650120 TCTGTATGTTGAAACCCCTTCTATC 58.350 40.000 0.00 0.00 34.86 2.08
3049 6507 6.215636 ACTCTGTATGTTGAAACCCCTTCTAT 59.784 38.462 0.00 0.00 34.86 1.98
3050 6508 5.546499 ACTCTGTATGTTGAAACCCCTTCTA 59.454 40.000 0.00 0.00 34.86 2.10
3051 6509 4.351111 ACTCTGTATGTTGAAACCCCTTCT 59.649 41.667 0.00 0.00 34.86 2.85
3052 6510 4.455877 CACTCTGTATGTTGAAACCCCTTC 59.544 45.833 0.00 0.00 34.31 3.46
3053 6511 4.398319 CACTCTGTATGTTGAAACCCCTT 58.602 43.478 0.00 0.00 0.00 3.95
3054 6512 3.244911 CCACTCTGTATGTTGAAACCCCT 60.245 47.826 0.00 0.00 0.00 4.79
3055 6513 3.081804 CCACTCTGTATGTTGAAACCCC 58.918 50.000 0.00 0.00 0.00 4.95
3056 6514 2.488153 GCCACTCTGTATGTTGAAACCC 59.512 50.000 0.00 0.00 0.00 4.11
3057 6515 3.146066 TGCCACTCTGTATGTTGAAACC 58.854 45.455 0.00 0.00 0.00 3.27
3058 6516 4.436050 CGATGCCACTCTGTATGTTGAAAC 60.436 45.833 0.00 0.00 0.00 2.78
3059 6517 3.684305 CGATGCCACTCTGTATGTTGAAA 59.316 43.478 0.00 0.00 0.00 2.69
3060 6518 3.261580 CGATGCCACTCTGTATGTTGAA 58.738 45.455 0.00 0.00 0.00 2.69
3061 6519 2.233676 ACGATGCCACTCTGTATGTTGA 59.766 45.455 0.00 0.00 0.00 3.18
3062 6520 2.349580 CACGATGCCACTCTGTATGTTG 59.650 50.000 0.00 0.00 0.00 3.33
3063 6521 2.621338 CACGATGCCACTCTGTATGTT 58.379 47.619 0.00 0.00 0.00 2.71
3064 6522 1.134699 CCACGATGCCACTCTGTATGT 60.135 52.381 0.00 0.00 0.00 2.29
3065 6523 1.134699 ACCACGATGCCACTCTGTATG 60.135 52.381 0.00 0.00 0.00 2.39
3066 6524 1.137086 GACCACGATGCCACTCTGTAT 59.863 52.381 0.00 0.00 0.00 2.29
3067 6525 0.530744 GACCACGATGCCACTCTGTA 59.469 55.000 0.00 0.00 0.00 2.74
3068 6526 1.293498 GACCACGATGCCACTCTGT 59.707 57.895 0.00 0.00 0.00 3.41
3069 6527 1.016130 GTGACCACGATGCCACTCTG 61.016 60.000 0.00 0.00 0.00 3.35
3070 6528 1.293498 GTGACCACGATGCCACTCT 59.707 57.895 0.00 0.00 0.00 3.24
3071 6529 3.876300 GTGACCACGATGCCACTC 58.124 61.111 0.00 0.00 0.00 3.51
3089 6547 1.069378 GTGCACGCCTCGTAGTGTAC 61.069 60.000 0.00 1.57 44.07 2.90
3090 6548 1.210931 GTGCACGCCTCGTAGTGTA 59.789 57.895 0.00 0.00 38.32 2.90
3091 6549 2.049433 GTGCACGCCTCGTAGTGT 60.049 61.111 0.00 0.00 38.32 3.55
3092 6550 2.049526 TGTGCACGCCTCGTAGTG 60.050 61.111 13.13 0.00 38.32 2.74
3093 6551 2.049433 GTGTGCACGCCTCGTAGT 60.049 61.111 19.81 0.00 38.32 2.73
3103 6561 2.668457 CCTCTCTTTGTATCGTGTGCAC 59.332 50.000 10.75 10.75 0.00 4.57
3104 6562 2.353704 CCCTCTCTTTGTATCGTGTGCA 60.354 50.000 0.00 0.00 0.00 4.57
3105 6563 2.271800 CCCTCTCTTTGTATCGTGTGC 58.728 52.381 0.00 0.00 0.00 4.57
3106 6564 2.233922 ACCCCTCTCTTTGTATCGTGTG 59.766 50.000 0.00 0.00 0.00 3.82
3107 6565 2.537143 ACCCCTCTCTTTGTATCGTGT 58.463 47.619 0.00 0.00 0.00 4.49
3108 6566 3.611766 AACCCCTCTCTTTGTATCGTG 57.388 47.619 0.00 0.00 0.00 4.35
3109 6567 3.326880 ACAAACCCCTCTCTTTGTATCGT 59.673 43.478 0.00 0.00 38.53 3.73
3110 6568 3.939066 ACAAACCCCTCTCTTTGTATCG 58.061 45.455 0.00 0.00 38.53 2.92
3111 6569 6.295719 TCTACAAACCCCTCTCTTTGTATC 57.704 41.667 4.02 0.00 40.40 2.24
3112 6570 6.893020 ATCTACAAACCCCTCTCTTTGTAT 57.107 37.500 4.02 0.00 40.40 2.29
3113 6571 6.697641 AATCTACAAACCCCTCTCTTTGTA 57.302 37.500 0.00 0.00 40.34 2.41
3114 6572 5.584551 AATCTACAAACCCCTCTCTTTGT 57.415 39.130 0.00 0.00 42.09 2.83
3115 6573 6.712276 AGTAATCTACAAACCCCTCTCTTTG 58.288 40.000 0.00 0.00 34.18 2.77
3116 6574 6.954352 AGTAATCTACAAACCCCTCTCTTT 57.046 37.500 0.00 0.00 0.00 2.52
3117 6575 6.954352 AAGTAATCTACAAACCCCTCTCTT 57.046 37.500 0.00 0.00 0.00 2.85
3118 6576 6.500751 TCAAAGTAATCTACAAACCCCTCTCT 59.499 38.462 0.00 0.00 0.00 3.10
3119 6577 6.708285 TCAAAGTAATCTACAAACCCCTCTC 58.292 40.000 0.00 0.00 0.00 3.20
3120 6578 6.697641 TCAAAGTAATCTACAAACCCCTCT 57.302 37.500 0.00 0.00 0.00 3.69
3121 6579 7.148069 CCATTCAAAGTAATCTACAAACCCCTC 60.148 40.741 0.00 0.00 0.00 4.30
3122 6580 6.663523 CCATTCAAAGTAATCTACAAACCCCT 59.336 38.462 0.00 0.00 0.00 4.79
3123 6581 6.436218 ACCATTCAAAGTAATCTACAAACCCC 59.564 38.462 0.00 0.00 0.00 4.95
3124 6582 7.312899 CACCATTCAAAGTAATCTACAAACCC 58.687 38.462 0.00 0.00 0.00 4.11
3125 6583 6.806739 GCACCATTCAAAGTAATCTACAAACC 59.193 38.462 0.00 0.00 0.00 3.27
3126 6584 7.367285 TGCACCATTCAAAGTAATCTACAAAC 58.633 34.615 0.00 0.00 0.00 2.93
3127 6585 7.517614 TGCACCATTCAAAGTAATCTACAAA 57.482 32.000 0.00 0.00 0.00 2.83
3128 6586 7.517614 TTGCACCATTCAAAGTAATCTACAA 57.482 32.000 0.00 0.00 0.00 2.41
3129 6587 7.701539 ATTGCACCATTCAAAGTAATCTACA 57.298 32.000 0.00 0.00 0.00 2.74
3130 6588 8.243426 TCAATTGCACCATTCAAAGTAATCTAC 58.757 33.333 0.00 0.00 0.00 2.59
3131 6589 8.347004 TCAATTGCACCATTCAAAGTAATCTA 57.653 30.769 0.00 0.00 0.00 1.98
3132 6590 7.230849 TCAATTGCACCATTCAAAGTAATCT 57.769 32.000 0.00 0.00 0.00 2.40
3133 6591 6.532657 CCTCAATTGCACCATTCAAAGTAATC 59.467 38.462 0.00 0.00 0.00 1.75
3134 6592 6.400568 CCTCAATTGCACCATTCAAAGTAAT 58.599 36.000 0.00 0.00 0.00 1.89
3135 6593 5.279406 CCCTCAATTGCACCATTCAAAGTAA 60.279 40.000 0.00 0.00 0.00 2.24
3189 6647 7.997107 TGGAGCATAAAATACTACACTAACG 57.003 36.000 0.00 0.00 0.00 3.18
3308 6820 6.108097 CGCTACGCATATTCTCTGATACTA 57.892 41.667 0.00 0.00 0.00 1.82
3325 6837 7.836358 ATACAAAATCAAATAATGCGCTACG 57.164 32.000 9.73 0.00 0.00 3.51
3359 6871 7.686438 TGTTGTGAACAATAGCAATACAGAT 57.314 32.000 0.00 0.00 38.72 2.90
3360 6872 7.174772 ACATGTTGTGAACAATAGCAATACAGA 59.825 33.333 0.00 0.00 45.86 3.41
3362 6874 7.174772 AGACATGTTGTGAACAATAGCAATACA 59.825 33.333 0.00 0.00 45.86 2.29
3363 6875 7.530010 AGACATGTTGTGAACAATAGCAATAC 58.470 34.615 0.00 0.00 45.86 1.89
3364 6876 7.390162 TGAGACATGTTGTGAACAATAGCAATA 59.610 33.333 0.00 0.00 45.86 1.90
3365 6877 6.207221 TGAGACATGTTGTGAACAATAGCAAT 59.793 34.615 0.00 0.00 45.86 3.56
3366 6878 5.530543 TGAGACATGTTGTGAACAATAGCAA 59.469 36.000 0.00 0.00 45.86 3.91
3367 6879 5.062528 TGAGACATGTTGTGAACAATAGCA 58.937 37.500 0.00 0.00 45.86 3.49
3368 6880 5.180117 ACTGAGACATGTTGTGAACAATAGC 59.820 40.000 0.00 0.00 45.86 2.97
3369 6881 6.791887 ACTGAGACATGTTGTGAACAATAG 57.208 37.500 0.00 0.00 45.86 1.73
3375 6887 9.500785 TTCATATTAACTGAGACATGTTGTGAA 57.499 29.630 0.00 0.00 0.00 3.18
3432 6946 7.456725 AGCTAGATTACAATTACAGGCATCAT 58.543 34.615 0.00 0.00 0.00 2.45
3433 6947 6.830912 AGCTAGATTACAATTACAGGCATCA 58.169 36.000 0.00 0.00 0.00 3.07
3470 6984 1.872952 CGCAATCTGGTCTGTGAACAA 59.127 47.619 0.00 0.00 0.00 2.83
3474 6988 1.069978 TGTTCGCAATCTGGTCTGTGA 59.930 47.619 0.00 0.00 0.00 3.58
3475 6989 1.462283 CTGTTCGCAATCTGGTCTGTG 59.538 52.381 0.00 0.00 0.00 3.66
3477 6991 2.084610 TCTGTTCGCAATCTGGTCTG 57.915 50.000 0.00 0.00 0.00 3.51
3478 6992 2.613977 CCTTCTGTTCGCAATCTGGTCT 60.614 50.000 0.00 0.00 0.00 3.85
3479 6993 1.734465 CCTTCTGTTCGCAATCTGGTC 59.266 52.381 0.00 0.00 0.00 4.02
3482 6996 0.095935 CGCCTTCTGTTCGCAATCTG 59.904 55.000 0.00 0.00 0.00 2.90
3483 6997 2.460330 CGCCTTCTGTTCGCAATCT 58.540 52.632 0.00 0.00 0.00 2.40
3491 7005 2.357517 CGTCCTGCGCCTTCTGTT 60.358 61.111 4.18 0.00 0.00 3.16
3501 7015 0.031585 TATATGTGACGGCGTCCTGC 59.968 55.000 34.28 24.12 45.38 4.85
3503 7017 0.672342 GGTATATGTGACGGCGTCCT 59.328 55.000 34.28 21.73 0.00 3.85
3504 7018 0.662374 CGGTATATGTGACGGCGTCC 60.662 60.000 34.28 25.29 0.00 4.79
3505 7019 1.273455 GCGGTATATGTGACGGCGTC 61.273 60.000 31.68 31.68 34.11 5.19
3522 7038 2.474526 CGTTCCTCTGTAAAAGCATGCG 60.475 50.000 13.01 0.00 0.00 4.73
3543 7059 3.276846 ATAATTCCACCGCGCGCC 61.277 61.111 27.36 8.11 0.00 6.53
3545 7061 0.042188 CTTCATAATTCCACCGCGCG 60.042 55.000 25.67 25.67 0.00 6.86
3546 7062 0.317020 GCTTCATAATTCCACCGCGC 60.317 55.000 0.00 0.00 0.00 6.86
3547 7063 0.042188 CGCTTCATAATTCCACCGCG 60.042 55.000 0.00 0.00 0.00 6.46
3548 7064 1.014352 ACGCTTCATAATTCCACCGC 58.986 50.000 0.00 0.00 0.00 5.68
3549 7065 1.330521 CCACGCTTCATAATTCCACCG 59.669 52.381 0.00 0.00 0.00 4.94
3555 7080 4.207891 ACTGACTCCACGCTTCATAATT 57.792 40.909 0.00 0.00 0.00 1.40
3583 7108 2.736682 CCCGCATTTCGTCCGACAC 61.737 63.158 0.00 0.00 36.19 3.67
3584 7109 2.433491 CCCGCATTTCGTCCGACA 60.433 61.111 0.00 0.00 36.19 4.35
3585 7110 2.433664 ACCCGCATTTCGTCCGAC 60.434 61.111 0.00 0.00 36.19 4.79
3586 7111 2.433491 CACCCGCATTTCGTCCGA 60.433 61.111 0.00 0.00 36.19 4.55
3587 7112 4.160635 GCACCCGCATTTCGTCCG 62.161 66.667 0.00 0.00 38.36 4.79
3588 7113 3.810896 GGCACCCGCATTTCGTCC 61.811 66.667 0.00 0.00 41.24 4.79
3589 7114 2.746277 AGGCACCCGCATTTCGTC 60.746 61.111 0.00 0.00 41.24 4.20
3590 7115 3.055719 CAGGCACCCGCATTTCGT 61.056 61.111 0.00 0.00 41.24 3.85
3591 7116 3.055719 ACAGGCACCCGCATTTCG 61.056 61.111 0.00 0.00 41.24 3.46
3592 7117 1.926511 CTCACAGGCACCCGCATTTC 61.927 60.000 0.00 0.00 41.24 2.17
3593 7118 1.973281 CTCACAGGCACCCGCATTT 60.973 57.895 0.00 0.00 41.24 2.32
3594 7119 2.360350 CTCACAGGCACCCGCATT 60.360 61.111 0.00 0.00 41.24 3.56
3595 7120 4.415150 CCTCACAGGCACCCGCAT 62.415 66.667 0.00 0.00 41.24 4.73
3598 7123 4.394712 GACCCTCACAGGCACCCG 62.395 72.222 0.00 0.00 32.73 5.28
3599 7124 4.394712 CGACCCTCACAGGCACCC 62.395 72.222 0.00 0.00 32.73 4.61
3600 7125 3.626924 ACGACCCTCACAGGCACC 61.627 66.667 0.00 0.00 32.73 5.01
3601 7126 2.357517 CACGACCCTCACAGGCAC 60.358 66.667 0.00 0.00 32.73 5.01
3602 7127 4.314440 GCACGACCCTCACAGGCA 62.314 66.667 0.00 0.00 32.73 4.75
3603 7128 4.314440 TGCACGACCCTCACAGGC 62.314 66.667 0.00 0.00 32.73 4.85
3604 7129 2.047844 CTGCACGACCCTCACAGG 60.048 66.667 0.00 0.00 34.30 4.00
3605 7130 2.740055 GCTGCACGACCCTCACAG 60.740 66.667 0.00 0.00 0.00 3.66
3615 7140 1.205820 CATCCATATGCGCTGCACG 59.794 57.895 9.73 4.61 43.04 5.34
3616 7141 1.129998 GATCATCCATATGCGCTGCAC 59.870 52.381 9.73 0.00 43.04 4.57
3617 7142 1.445871 GATCATCCATATGCGCTGCA 58.554 50.000 9.73 5.73 44.86 4.41
3618 7143 0.372679 CGATCATCCATATGCGCTGC 59.627 55.000 9.73 0.00 32.76 5.25
3619 7144 1.004595 CCGATCATCCATATGCGCTG 58.995 55.000 9.73 0.00 32.76 5.18
3620 7145 0.107993 CCCGATCATCCATATGCGCT 60.108 55.000 9.73 0.00 32.76 5.92
3643 7168 2.013807 CATGTATTCCACCACCGCG 58.986 57.895 0.00 0.00 0.00 6.46
3646 7171 0.393808 ACGGCATGTATTCCACCACC 60.394 55.000 0.00 0.00 0.00 4.61
3668 7193 3.668447 CAGTTCTTAGGCTTCTTGCTCA 58.332 45.455 0.00 0.00 42.39 4.26
3713 7238 0.743345 CCCACGTACAGCTTTAGGGC 60.743 60.000 4.74 0.00 0.00 5.19
3718 7243 0.036671 GGTAGCCCACGTACAGCTTT 60.037 55.000 10.89 0.00 38.06 3.51
3720 7245 2.356780 GGGTAGCCCACGTACAGCT 61.357 63.158 10.52 10.52 44.65 4.24
3747 7272 1.543941 GCTCTCGAATCGTCATGCGG 61.544 60.000 1.52 0.00 41.72 5.69
3777 7302 4.287067 AGAGTGCTCTTCTTCATACCCAAA 59.713 41.667 0.00 0.00 36.31 3.28
3834 7359 4.319333 GCTTGATGAGATTATTCGCTGTGG 60.319 45.833 0.00 0.00 0.00 4.17
3845 7370 4.141756 CCTCACAGTAGGCTTGATGAGATT 60.142 45.833 15.32 0.00 36.50 2.40
3864 7389 2.105821 ACATTTTTCCTGTCGTCCCTCA 59.894 45.455 0.00 0.00 0.00 3.86
4004 7529 4.202182 GCCCCGTCTGATACAGTAATAACA 60.202 45.833 0.00 0.00 32.61 2.41
4055 7580 3.380004 AGTCCTTGCATGTTTTTGTTCGA 59.620 39.130 0.00 0.00 0.00 3.71
4066 7591 0.935898 GCTGATCGAGTCCTTGCATG 59.064 55.000 0.00 0.00 0.00 4.06
4070 7595 2.801342 GCCTAAGCTGATCGAGTCCTTG 60.801 54.545 0.00 0.00 35.50 3.61
4090 7615 7.095857 CGTATAATCCATCTTGTGAGAGAAAGC 60.096 40.741 0.00 0.00 34.85 3.51
4150 7675 3.011595 TCCAAAACCATCTGACCATCCAT 59.988 43.478 0.00 0.00 0.00 3.41
4155 7680 2.238521 GCTTCCAAAACCATCTGACCA 58.761 47.619 0.00 0.00 0.00 4.02
4158 7683 2.559698 TCGCTTCCAAAACCATCTGA 57.440 45.000 0.00 0.00 0.00 3.27
4175 7700 2.042686 TCCATTGCTTTGGAGGATCG 57.957 50.000 4.31 0.00 40.90 3.69
4228 7753 2.095668 AGTAGCAGAGAAGACGTGAACG 60.096 50.000 0.00 0.40 46.33 3.95
4265 7790 2.057137 TAGCATCCCACAAGAATGCC 57.943 50.000 3.13 0.00 38.90 4.40
4267 7792 5.389859 TTGTTTAGCATCCCACAAGAATG 57.610 39.130 0.00 0.00 0.00 2.67
4268 7793 5.649782 CTTGTTTAGCATCCCACAAGAAT 57.350 39.130 5.16 0.00 46.08 2.40
4275 7800 2.083774 CGCTTCTTGTTTAGCATCCCA 58.916 47.619 0.00 0.00 37.23 4.37
4278 7803 2.900122 TGCGCTTCTTGTTTAGCATC 57.100 45.000 9.73 0.00 37.23 3.91
4281 7806 2.476854 CCAGATGCGCTTCTTGTTTAGC 60.477 50.000 22.03 0.00 0.00 3.09
4282 7807 2.744202 ACCAGATGCGCTTCTTGTTTAG 59.256 45.455 22.03 10.44 0.00 1.85
4366 7891 7.826744 TGAAGGGAAATAAAAGCAAAAGTTTGT 59.173 29.630 5.71 0.00 40.24 2.83
4367 7892 8.122330 GTGAAGGGAAATAAAAGCAAAAGTTTG 58.878 33.333 0.00 0.00 41.03 2.93
4368 7893 8.046708 AGTGAAGGGAAATAAAAGCAAAAGTTT 58.953 29.630 0.00 0.00 0.00 2.66
4369 7894 7.495606 CAGTGAAGGGAAATAAAAGCAAAAGTT 59.504 33.333 0.00 0.00 0.00 2.66
4370 7895 6.986231 CAGTGAAGGGAAATAAAAGCAAAAGT 59.014 34.615 0.00 0.00 0.00 2.66
4371 7896 6.986231 ACAGTGAAGGGAAATAAAAGCAAAAG 59.014 34.615 0.00 0.00 0.00 2.27
4374 7899 6.547880 TGTACAGTGAAGGGAAATAAAAGCAA 59.452 34.615 0.00 0.00 0.00 3.91
4375 7900 6.065374 TGTACAGTGAAGGGAAATAAAAGCA 58.935 36.000 0.00 0.00 0.00 3.91
4376 7901 6.569179 TGTACAGTGAAGGGAAATAAAAGC 57.431 37.500 0.00 0.00 0.00 3.51
4381 7906 9.575868 TGTTAAATTGTACAGTGAAGGGAAATA 57.424 29.630 0.00 0.00 0.00 1.40
4417 7959 4.473196 AGGGGGAAAAAGCAAAAGAGAAAA 59.527 37.500 0.00 0.00 0.00 2.29
4418 7960 4.037222 AGGGGGAAAAAGCAAAAGAGAAA 58.963 39.130 0.00 0.00 0.00 2.52
4419 7961 3.641436 GAGGGGGAAAAAGCAAAAGAGAA 59.359 43.478 0.00 0.00 0.00 2.87
4420 7962 3.230976 GAGGGGGAAAAAGCAAAAGAGA 58.769 45.455 0.00 0.00 0.00 3.10
4421 7963 2.300152 GGAGGGGGAAAAAGCAAAAGAG 59.700 50.000 0.00 0.00 0.00 2.85
4422 7964 2.325484 GGAGGGGGAAAAAGCAAAAGA 58.675 47.619 0.00 0.00 0.00 2.52
4423 7965 2.046292 TGGAGGGGGAAAAAGCAAAAG 58.954 47.619 0.00 0.00 0.00 2.27
4424 7966 2.182516 TGGAGGGGGAAAAAGCAAAA 57.817 45.000 0.00 0.00 0.00 2.44
4425 7967 2.371510 CAATGGAGGGGGAAAAAGCAAA 59.628 45.455 0.00 0.00 0.00 3.68
4426 7968 1.977129 CAATGGAGGGGGAAAAAGCAA 59.023 47.619 0.00 0.00 0.00 3.91
4427 7969 1.132881 ACAATGGAGGGGGAAAAAGCA 60.133 47.619 0.00 0.00 0.00 3.91
4428 7970 1.644509 ACAATGGAGGGGGAAAAAGC 58.355 50.000 0.00 0.00 0.00 3.51
4429 7971 3.773560 TGTACAATGGAGGGGGAAAAAG 58.226 45.455 0.00 0.00 0.00 2.27
4430 7972 3.905493 TGTACAATGGAGGGGGAAAAA 57.095 42.857 0.00 0.00 0.00 1.94
4431 7973 3.905493 TTGTACAATGGAGGGGGAAAA 57.095 42.857 3.59 0.00 0.00 2.29
4432 7974 4.412060 AATTGTACAATGGAGGGGGAAA 57.588 40.909 21.46 0.00 0.00 3.13
4433 7975 4.412060 AAATTGTACAATGGAGGGGGAA 57.588 40.909 21.46 0.00 0.00 3.97
4434 7976 5.222358 TGTTAAATTGTACAATGGAGGGGGA 60.222 40.000 21.46 0.00 0.00 4.81
4435 7977 5.020132 TGTTAAATTGTACAATGGAGGGGG 58.980 41.667 21.46 0.00 0.00 5.40
4436 7978 6.597832 TTGTTAAATTGTACAATGGAGGGG 57.402 37.500 21.46 0.00 29.82 4.79
4437 7979 9.500785 AAAATTGTTAAATTGTACAATGGAGGG 57.499 29.630 21.46 0.00 42.47 4.30
4461 8003 7.010091 GCAAAAGAGAAAATGGAAGACGAAAAA 59.990 33.333 0.00 0.00 0.00 1.94
4462 8004 6.475402 GCAAAAGAGAAAATGGAAGACGAAAA 59.525 34.615 0.00 0.00 0.00 2.29
4463 8005 5.977129 GCAAAAGAGAAAATGGAAGACGAAA 59.023 36.000 0.00 0.00 0.00 3.46
4464 8006 5.507315 GGCAAAAGAGAAAATGGAAGACGAA 60.507 40.000 0.00 0.00 0.00 3.85
4465 8007 4.023193 GGCAAAAGAGAAAATGGAAGACGA 60.023 41.667 0.00 0.00 0.00 4.20
4466 8008 4.022849 AGGCAAAAGAGAAAATGGAAGACG 60.023 41.667 0.00 0.00 0.00 4.18
4467 8009 5.459536 AGGCAAAAGAGAAAATGGAAGAC 57.540 39.130 0.00 0.00 0.00 3.01
4468 8010 6.484364 AAAGGCAAAAGAGAAAATGGAAGA 57.516 33.333 0.00 0.00 0.00 2.87
4469 8011 6.203530 GGAAAAGGCAAAAGAGAAAATGGAAG 59.796 38.462 0.00 0.00 0.00 3.46
4470 8012 6.054941 GGAAAAGGCAAAAGAGAAAATGGAA 58.945 36.000 0.00 0.00 0.00 3.53
4471 8013 5.454613 GGGAAAAGGCAAAAGAGAAAATGGA 60.455 40.000 0.00 0.00 0.00 3.41
4472 8014 4.756642 GGGAAAAGGCAAAAGAGAAAATGG 59.243 41.667 0.00 0.00 0.00 3.16
4473 8015 4.756642 GGGGAAAAGGCAAAAGAGAAAATG 59.243 41.667 0.00 0.00 0.00 2.32
4474 8016 4.202461 GGGGGAAAAGGCAAAAGAGAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
4475 8017 3.135712 GGGGGAAAAGGCAAAAGAGAAAA 59.864 43.478 0.00 0.00 0.00 2.29
4476 8018 2.703536 GGGGGAAAAGGCAAAAGAGAAA 59.296 45.455 0.00 0.00 0.00 2.52
4477 8019 2.090775 AGGGGGAAAAGGCAAAAGAGAA 60.091 45.455 0.00 0.00 0.00 2.87
4478 8020 1.503347 AGGGGGAAAAGGCAAAAGAGA 59.497 47.619 0.00 0.00 0.00 3.10
4479 8021 1.895798 GAGGGGGAAAAGGCAAAAGAG 59.104 52.381 0.00 0.00 0.00 2.85
4480 8022 1.482365 GGAGGGGGAAAAGGCAAAAGA 60.482 52.381 0.00 0.00 0.00 2.52
4481 8023 0.976641 GGAGGGGGAAAAGGCAAAAG 59.023 55.000 0.00 0.00 0.00 2.27
4482 8024 0.266152 TGGAGGGGGAAAAGGCAAAA 59.734 50.000 0.00 0.00 0.00 2.44
4483 8025 0.491371 ATGGAGGGGGAAAAGGCAAA 59.509 50.000 0.00 0.00 0.00 3.68
4484 8026 0.491371 AATGGAGGGGGAAAAGGCAA 59.509 50.000 0.00 0.00 0.00 4.52
4485 8027 0.252193 CAATGGAGGGGGAAAAGGCA 60.252 55.000 0.00 0.00 0.00 4.75
4486 8028 0.252239 ACAATGGAGGGGGAAAAGGC 60.252 55.000 0.00 0.00 0.00 4.35
4487 8029 2.042433 TGTACAATGGAGGGGGAAAAGG 59.958 50.000 0.00 0.00 0.00 3.11
4488 8030 3.449746 TGTACAATGGAGGGGGAAAAG 57.550 47.619 0.00 0.00 0.00 2.27
4489 8031 3.905493 TTGTACAATGGAGGGGGAAAA 57.095 42.857 3.59 0.00 0.00 2.29
4490 8032 4.412060 AATTGTACAATGGAGGGGGAAA 57.588 40.909 21.46 0.00 0.00 3.13
4491 8033 4.412060 AAATTGTACAATGGAGGGGGAA 57.588 40.909 21.46 0.00 0.00 3.97
4492 8034 5.222358 TGTTAAATTGTACAATGGAGGGGGA 60.222 40.000 21.46 0.00 0.00 4.81
4493 8035 5.020132 TGTTAAATTGTACAATGGAGGGGG 58.980 41.667 21.46 0.00 0.00 5.40
4494 8036 6.597832 TTGTTAAATTGTACAATGGAGGGG 57.402 37.500 21.46 0.00 29.82 4.79
4495 8037 9.500785 AAAATTGTTAAATTGTACAATGGAGGG 57.499 29.630 21.46 0.00 42.47 4.30
4519 8061 9.532494 TGGATAGAGAAAATGGAAGATGAAAAA 57.468 29.630 0.00 0.00 0.00 1.94
4520 8062 9.532494 TTGGATAGAGAAAATGGAAGATGAAAA 57.468 29.630 0.00 0.00 0.00 2.29
4521 8063 9.705103 ATTGGATAGAGAAAATGGAAGATGAAA 57.295 29.630 0.00 0.00 0.00 2.69
4522 8064 9.705103 AATTGGATAGAGAAAATGGAAGATGAA 57.295 29.630 0.00 0.00 0.00 2.57
4523 8065 9.705103 AAATTGGATAGAGAAAATGGAAGATGA 57.295 29.630 0.00 0.00 0.00 2.92
4524 8066 9.745880 CAAATTGGATAGAGAAAATGGAAGATG 57.254 33.333 0.00 0.00 0.00 2.90
4525 8067 8.419442 GCAAATTGGATAGAGAAAATGGAAGAT 58.581 33.333 0.00 0.00 0.00 2.40
4751 8300 3.523547 TGTTTTCTTTTCGGAGTCGTCA 58.476 40.909 0.00 0.00 37.69 4.35
4761 8310 6.392625 AGCCTTCCTTACTGTTTTCTTTTC 57.607 37.500 0.00 0.00 0.00 2.29
4785 8334 2.768253 TGTCGATGTCATCAAAGCCT 57.232 45.000 13.22 0.00 0.00 4.58
4787 8336 4.337763 GTCATTGTCGATGTCATCAAAGC 58.662 43.478 13.22 0.77 37.06 3.51
4802 8351 4.220821 ACATCTTCACTACGAGGTCATTGT 59.779 41.667 0.00 0.00 0.00 2.71
4813 8362 6.730175 ACTACATCATCGACATCTTCACTAC 58.270 40.000 0.00 0.00 0.00 2.73
4815 8364 5.358160 TGACTACATCATCGACATCTTCACT 59.642 40.000 0.00 0.00 29.99 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.