Multiple sequence alignment - TraesCS6D01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G148800 chr6D 100.000 4514 0 0 1 4514 122516546 122521059 0.000000e+00 8336.0
1 TraesCS6D01G148800 chr6D 94.737 57 3 0 42 98 122414012 122414068 6.220000e-14 89.8
2 TraesCS6D01G148800 chr6A 93.941 2971 92 31 844 3758 160473838 160476776 0.000000e+00 4409.0
3 TraesCS6D01G148800 chr6A 91.368 475 20 7 392 847 160473333 160473805 8.240000e-177 630.0
4 TraesCS6D01G148800 chr6B 94.690 2599 65 14 1196 3760 216354759 216357318 0.000000e+00 3967.0
5 TraesCS6D01G148800 chr6B 89.693 553 27 9 660 1200 216352489 216353023 0.000000e+00 678.0
6 TraesCS6D01G148800 chr6B 88.325 394 26 7 295 669 216350031 216350423 5.320000e-124 455.0
7 TraesCS6D01G148800 chr6B 85.207 169 9 6 1 154 572379449 572379616 4.670000e-35 159.0
8 TraesCS6D01G148800 chr6B 100.000 29 0 0 4481 4509 720503087 720503115 2.000000e-03 54.7
9 TraesCS6D01G148800 chr7A 78.938 2203 325 92 1083 3219 652286501 652288630 0.000000e+00 1369.0
10 TraesCS6D01G148800 chr7A 77.475 2131 350 79 1091 3175 652195269 652197315 0.000000e+00 1157.0
11 TraesCS6D01G148800 chr7A 93.137 714 28 10 3796 4490 37852577 37851866 0.000000e+00 1027.0
12 TraesCS6D01G148800 chr7A 77.469 1802 317 43 1406 3175 652357298 652359042 0.000000e+00 996.0
13 TraesCS6D01G148800 chr7A 78.524 908 166 16 1438 2340 652163852 652164735 1.820000e-158 569.0
14 TraesCS6D01G148800 chr7A 78.507 884 165 12 1406 2284 652338370 652339233 1.420000e-154 556.0
15 TraesCS6D01G148800 chr7A 83.404 235 33 3 1092 1320 652162162 652162396 3.540000e-51 213.0
16 TraesCS6D01G148800 chr7A 82.511 223 39 0 3261 3483 652165618 652165840 3.560000e-46 196.0
17 TraesCS6D01G148800 chr7A 82.222 225 40 0 3262 3486 652177193 652177417 1.280000e-45 195.0
18 TraesCS6D01G148800 chr7A 83.453 139 23 0 1185 1323 652232094 652232232 3.660000e-26 130.0
19 TraesCS6D01G148800 chr7B 79.071 1787 287 50 1409 3180 616822863 616821149 0.000000e+00 1147.0
20 TraesCS6D01G148800 chr7B 78.460 1792 316 35 1406 3171 616836628 616838375 0.000000e+00 1107.0
21 TraesCS6D01G148800 chr7B 77.889 1800 321 46 1409 3180 616903481 616905231 0.000000e+00 1048.0
22 TraesCS6D01G148800 chr7B 81.086 1216 188 28 1092 2295 616749837 616748652 0.000000e+00 933.0
23 TraesCS6D01G148800 chr7B 78.123 1289 222 38 1091 2353 617485903 617487157 0.000000e+00 763.0
24 TraesCS6D01G148800 chr7B 78.108 1279 204 43 1092 2335 617557873 617556636 0.000000e+00 741.0
25 TraesCS6D01G148800 chr7B 83.838 693 89 12 2505 3181 617487293 617487978 4.920000e-179 638.0
26 TraesCS6D01G148800 chr7B 84.179 670 81 18 2523 3175 617579198 617579859 1.070000e-175 627.0
27 TraesCS6D01G148800 chr7B 84.327 587 47 23 3917 4490 447998877 447999431 2.390000e-147 532.0
28 TraesCS6D01G148800 chr7B 81.982 333 46 12 4145 4471 604310069 604310393 2.070000e-68 270.0
29 TraesCS6D01G148800 chr7B 85.776 232 33 0 3265 3496 617555745 617555514 3.490000e-61 246.0
30 TraesCS6D01G148800 chr7B 85.778 225 32 0 3262 3486 616838430 616838654 5.840000e-59 239.0
31 TraesCS6D01G148800 chr7B 84.416 154 13 5 4346 4490 448003485 448003636 1.690000e-29 141.0
32 TraesCS6D01G148800 chr7B 84.921 126 13 4 4367 4490 468417808 468417687 6.130000e-24 122.0
33 TraesCS6D01G148800 chr7D 91.933 595 21 13 3920 4490 540844934 540844343 0.000000e+00 808.0
34 TraesCS6D01G148800 chr7D 78.288 1285 227 33 1091 2353 565643716 565644970 0.000000e+00 780.0
35 TraesCS6D01G148800 chr7D 85.369 704 82 14 2503 3191 566015437 566016134 0.000000e+00 710.0
36 TraesCS6D01G148800 chr7D 84.030 670 84 16 2522 3175 566038929 566039591 1.380000e-174 623.0
37 TraesCS6D01G148800 chr7D 83.877 583 46 24 3917 4490 430487865 430488408 3.110000e-141 512.0
38 TraesCS6D01G148800 chr7D 82.597 362 40 15 4146 4490 430488479 430488834 9.490000e-77 298.0
39 TraesCS6D01G148800 chr7D 84.848 231 35 0 3266 3496 566016173 566016403 2.720000e-57 233.0
40 TraesCS6D01G148800 chr7D 84.071 226 34 2 3262 3486 565619575 565619799 2.730000e-52 217.0
41 TraesCS6D01G148800 chr7D 80.952 189 13 6 3793 3980 430487715 430487881 1.320000e-25 128.0
42 TraesCS6D01G148800 chr7D 95.000 80 4 0 3793 3872 540845091 540845012 4.740000e-25 126.0
43 TraesCS6D01G148800 chr7D 80.808 99 13 3 3880 3973 540845026 540844929 6.260000e-09 73.1
44 TraesCS6D01G148800 chr2A 87.414 580 42 17 3920 4490 196503864 196503307 4.920000e-179 638.0
45 TraesCS6D01G148800 chr2A 80.488 82 14 2 2729 2809 202890293 202890373 1.360000e-05 62.1
46 TraesCS6D01G148800 chr2A 88.235 51 4 2 1 50 744896670 744896621 4.880000e-05 60.2
47 TraesCS6D01G148800 chr2A 100.000 28 0 0 23 50 543619207 543619234 8.000000e-03 52.8
48 TraesCS6D01G148800 chr1B 83.871 372 31 24 4145 4490 100638401 100638769 1.210000e-85 327.0
49 TraesCS6D01G148800 chr1B 100.000 30 0 0 3986 4015 74248001 74247972 6.310000e-04 56.5
50 TraesCS6D01G148800 chr1B 100.000 29 0 0 4481 4509 102141261 102141233 2.000000e-03 54.7
51 TraesCS6D01G148800 chr5B 82.534 292 35 7 4210 4490 314274909 314275195 4.510000e-60 243.0
52 TraesCS6D01G148800 chr5B 89.796 98 8 2 1 98 687208465 687208560 1.700000e-24 124.0
53 TraesCS6D01G148800 chr4B 80.678 295 42 7 4208 4490 664091300 664091009 9.830000e-52 215.0
54 TraesCS6D01G148800 chr4B 78.467 274 25 18 3793 4036 538950465 538950196 1.010000e-31 148.0
55 TraesCS6D01G148800 chr3A 87.571 177 8 6 1 163 8553133 8552957 4.610000e-45 193.0
56 TraesCS6D01G148800 chr3A 94.444 36 2 0 4479 4514 428568346 428568311 6.310000e-04 56.5
57 TraesCS6D01G148800 chr3A 100.000 29 0 0 4486 4514 98833148 98833176 2.000000e-03 54.7
58 TraesCS6D01G148800 chr3A 100.000 29 0 0 4486 4514 658863914 658863942 2.000000e-03 54.7
59 TraesCS6D01G148800 chrUn 85.311 177 10 9 1 163 45191930 45191756 7.770000e-38 169.0
60 TraesCS6D01G148800 chr2B 84.831 178 12 9 1 164 144616331 144616155 1.000000e-36 165.0
61 TraesCS6D01G148800 chr2B 83.824 136 7 9 42 163 144643968 144643834 1.030000e-21 115.0
62 TraesCS6D01G148800 chr5D 84.324 185 7 1 1 163 472754579 472754395 1.300000e-35 161.0
63 TraesCS6D01G148800 chr5D 87.850 107 12 1 1 106 531483265 531483159 1.700000e-24 124.0
64 TraesCS6D01G148800 chr3B 84.270 178 13 2 1 163 40251685 40251508 4.670000e-35 159.0
65 TraesCS6D01G148800 chr3B 92.632 95 7 0 1 95 596717356 596717262 2.190000e-28 137.0
66 TraesCS6D01G148800 chr3B 83.212 137 8 8 41 163 801030312 801030177 1.330000e-20 111.0
67 TraesCS6D01G148800 chr3B 95.312 64 3 0 98 161 789637562 789637625 7.990000e-18 102.0
68 TraesCS6D01G148800 chr3B 100.000 30 0 0 4485 4514 752166495 752166466 6.310000e-04 56.5
69 TraesCS6D01G148800 chr2D 83.088 136 7 3 42 163 88153835 88153702 4.770000e-20 110.0
70 TraesCS6D01G148800 chr2D 80.488 82 14 2 2729 2809 188837978 188838058 1.360000e-05 62.1
71 TraesCS6D01G148800 chr2D 96.970 33 0 1 4480 4512 598020573 598020542 2.000000e-03 54.7
72 TraesCS6D01G148800 chr2D 96.970 33 0 1 4480 4512 598048764 598048733 2.000000e-03 54.7
73 TraesCS6D01G148800 chr1D 92.537 67 4 1 98 164 183004483 183004418 1.340000e-15 95.3
74 TraesCS6D01G148800 chr3D 92.424 66 4 1 98 163 596273413 596273349 4.810000e-15 93.5
75 TraesCS6D01G148800 chr4D 89.706 68 6 1 39 106 28560483 28560549 8.050000e-13 86.1
76 TraesCS6D01G148800 chr4A 96.970 33 0 1 4482 4514 492533617 492533648 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G148800 chr6D 122516546 122521059 4513 False 8336.000000 8336 100.000000 1 4514 1 chr6D.!!$F2 4513
1 TraesCS6D01G148800 chr6A 160473333 160476776 3443 False 2519.500000 4409 92.654500 392 3758 2 chr6A.!!$F1 3366
2 TraesCS6D01G148800 chr6B 216350031 216357318 7287 False 1700.000000 3967 90.902667 295 3760 3 chr6B.!!$F3 3465
3 TraesCS6D01G148800 chr7A 652286501 652288630 2129 False 1369.000000 1369 78.938000 1083 3219 1 chr7A.!!$F4 2136
4 TraesCS6D01G148800 chr7A 652195269 652197315 2046 False 1157.000000 1157 77.475000 1091 3175 1 chr7A.!!$F2 2084
5 TraesCS6D01G148800 chr7A 37851866 37852577 711 True 1027.000000 1027 93.137000 3796 4490 1 chr7A.!!$R1 694
6 TraesCS6D01G148800 chr7A 652357298 652359042 1744 False 996.000000 996 77.469000 1406 3175 1 chr7A.!!$F6 1769
7 TraesCS6D01G148800 chr7A 652338370 652339233 863 False 556.000000 556 78.507000 1406 2284 1 chr7A.!!$F5 878
8 TraesCS6D01G148800 chr7A 652162162 652165840 3678 False 326.000000 569 81.479667 1092 3483 3 chr7A.!!$F7 2391
9 TraesCS6D01G148800 chr7B 616821149 616822863 1714 True 1147.000000 1147 79.071000 1409 3180 1 chr7B.!!$R3 1771
10 TraesCS6D01G148800 chr7B 616903481 616905231 1750 False 1048.000000 1048 77.889000 1409 3180 1 chr7B.!!$F4 1771
11 TraesCS6D01G148800 chr7B 616748652 616749837 1185 True 933.000000 933 81.086000 1092 2295 1 chr7B.!!$R2 1203
12 TraesCS6D01G148800 chr7B 617485903 617487978 2075 False 700.500000 763 80.980500 1091 3181 2 chr7B.!!$F7 2090
13 TraesCS6D01G148800 chr7B 616836628 616838654 2026 False 673.000000 1107 82.119000 1406 3486 2 chr7B.!!$F6 2080
14 TraesCS6D01G148800 chr7B 617579198 617579859 661 False 627.000000 627 84.179000 2523 3175 1 chr7B.!!$F5 652
15 TraesCS6D01G148800 chr7B 447998877 447999431 554 False 532.000000 532 84.327000 3917 4490 1 chr7B.!!$F1 573
16 TraesCS6D01G148800 chr7B 617555514 617557873 2359 True 493.500000 741 81.942000 1092 3496 2 chr7B.!!$R4 2404
17 TraesCS6D01G148800 chr7D 565643716 565644970 1254 False 780.000000 780 78.288000 1091 2353 1 chr7D.!!$F2 1262
18 TraesCS6D01G148800 chr7D 566038929 566039591 662 False 623.000000 623 84.030000 2522 3175 1 chr7D.!!$F3 653
19 TraesCS6D01G148800 chr7D 566015437 566016403 966 False 471.500000 710 85.108500 2503 3496 2 chr7D.!!$F5 993
20 TraesCS6D01G148800 chr7D 540844343 540845091 748 True 335.700000 808 89.247000 3793 4490 3 chr7D.!!$R1 697
21 TraesCS6D01G148800 chr7D 430487715 430488834 1119 False 312.666667 512 82.475333 3793 4490 3 chr7D.!!$F4 697
22 TraesCS6D01G148800 chr2A 196503307 196503864 557 True 638.000000 638 87.414000 3920 4490 1 chr2A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.037605 CACCGACCCACCTACTGAAC 60.038 60.000 0.0 0.0 0.00 3.18 F
1065 3224 0.107703 CTCATTCTTGCCCGGTAGCA 60.108 55.000 0.0 0.0 42.17 3.49 F
1391 5326 1.343465 GGAGGAGGAGTCGAACAACAA 59.657 52.381 0.0 0.0 0.00 2.83 F
2578 7905 0.319555 CGCCACCAAGAACTTCTCGA 60.320 55.000 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 5335 0.170116 CACCGCAGTGTTGTTGTTGT 59.830 50.000 0.0 0.0 39.30 3.32 R
2418 7745 2.677524 AATGCCGCTGCCACACAT 60.678 55.556 0.0 0.0 36.33 3.21 R
3213 8586 4.159901 TCGCTGCCATCATCGCCA 62.160 61.111 0.0 0.0 32.42 5.69 R
3559 8938 2.512515 GCGCTCCTGATGTGGGAC 60.513 66.667 0.0 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.057406 CCTTCTAGATGCTTCAGGAGTG 57.943 50.000 0.20 0.00 0.00 3.51
22 23 3.703556 CCTTCTAGATGCTTCAGGAGTGA 59.296 47.826 0.20 0.00 0.00 3.41
23 24 4.202141 CCTTCTAGATGCTTCAGGAGTGAG 60.202 50.000 0.20 0.93 32.98 3.51
24 25 3.974719 TCTAGATGCTTCAGGAGTGAGT 58.025 45.455 2.07 0.00 32.98 3.41
25 26 4.348486 TCTAGATGCTTCAGGAGTGAGTT 58.652 43.478 2.07 0.00 32.98 3.01
26 27 5.510430 TCTAGATGCTTCAGGAGTGAGTTA 58.490 41.667 2.07 0.00 32.98 2.24
27 28 5.952347 TCTAGATGCTTCAGGAGTGAGTTAA 59.048 40.000 2.07 0.00 32.98 2.01
28 29 5.083533 AGATGCTTCAGGAGTGAGTTAAG 57.916 43.478 2.07 0.00 32.98 1.85
29 30 4.774726 AGATGCTTCAGGAGTGAGTTAAGA 59.225 41.667 2.07 0.00 32.98 2.10
30 31 5.424895 AGATGCTTCAGGAGTGAGTTAAGAT 59.575 40.000 2.07 0.00 32.98 2.40
31 32 5.489792 TGCTTCAGGAGTGAGTTAAGATT 57.510 39.130 0.00 0.00 32.98 2.40
32 33 5.240891 TGCTTCAGGAGTGAGTTAAGATTG 58.759 41.667 0.00 0.00 32.98 2.67
33 34 5.012046 TGCTTCAGGAGTGAGTTAAGATTGA 59.988 40.000 0.00 0.00 32.98 2.57
34 35 5.580297 GCTTCAGGAGTGAGTTAAGATTGAG 59.420 44.000 0.00 0.00 32.98 3.02
35 36 5.667539 TCAGGAGTGAGTTAAGATTGAGG 57.332 43.478 0.00 0.00 0.00 3.86
36 37 4.467795 TCAGGAGTGAGTTAAGATTGAGGG 59.532 45.833 0.00 0.00 0.00 4.30
37 38 4.467795 CAGGAGTGAGTTAAGATTGAGGGA 59.532 45.833 0.00 0.00 0.00 4.20
38 39 4.714308 AGGAGTGAGTTAAGATTGAGGGAG 59.286 45.833 0.00 0.00 0.00 4.30
39 40 4.141824 GGAGTGAGTTAAGATTGAGGGAGG 60.142 50.000 0.00 0.00 0.00 4.30
40 41 4.689062 AGTGAGTTAAGATTGAGGGAGGA 58.311 43.478 0.00 0.00 0.00 3.71
41 42 5.284582 AGTGAGTTAAGATTGAGGGAGGAT 58.715 41.667 0.00 0.00 0.00 3.24
42 43 5.130145 AGTGAGTTAAGATTGAGGGAGGATG 59.870 44.000 0.00 0.00 0.00 3.51
43 44 5.032846 TGAGTTAAGATTGAGGGAGGATGT 58.967 41.667 0.00 0.00 0.00 3.06
44 45 5.488919 TGAGTTAAGATTGAGGGAGGATGTT 59.511 40.000 0.00 0.00 0.00 2.71
45 46 6.672218 TGAGTTAAGATTGAGGGAGGATGTTA 59.328 38.462 0.00 0.00 0.00 2.41
46 47 7.130681 AGTTAAGATTGAGGGAGGATGTTAG 57.869 40.000 0.00 0.00 0.00 2.34
47 48 6.903534 AGTTAAGATTGAGGGAGGATGTTAGA 59.096 38.462 0.00 0.00 0.00 2.10
48 49 5.622346 AAGATTGAGGGAGGATGTTAGAC 57.378 43.478 0.00 0.00 0.00 2.59
49 50 4.889780 AGATTGAGGGAGGATGTTAGACT 58.110 43.478 0.00 0.00 0.00 3.24
50 51 5.284582 AGATTGAGGGAGGATGTTAGACTT 58.715 41.667 0.00 0.00 0.00 3.01
51 52 5.365314 AGATTGAGGGAGGATGTTAGACTTC 59.635 44.000 0.00 0.00 0.00 3.01
52 53 4.061131 TGAGGGAGGATGTTAGACTTCA 57.939 45.455 0.00 0.00 0.00 3.02
53 54 4.624913 TGAGGGAGGATGTTAGACTTCAT 58.375 43.478 0.00 0.00 0.00 2.57
54 55 5.777449 TGAGGGAGGATGTTAGACTTCATA 58.223 41.667 0.00 0.00 0.00 2.15
55 56 6.385443 TGAGGGAGGATGTTAGACTTCATAT 58.615 40.000 0.00 0.00 0.00 1.78
56 57 6.846505 TGAGGGAGGATGTTAGACTTCATATT 59.153 38.462 0.00 0.00 0.00 1.28
57 58 7.072263 AGGGAGGATGTTAGACTTCATATTG 57.928 40.000 0.00 0.00 0.00 1.90
58 59 6.617371 AGGGAGGATGTTAGACTTCATATTGT 59.383 38.462 0.00 0.00 0.00 2.71
59 60 7.789831 AGGGAGGATGTTAGACTTCATATTGTA 59.210 37.037 0.00 0.00 0.00 2.41
60 61 8.091449 GGGAGGATGTTAGACTTCATATTGTAG 58.909 40.741 0.00 0.00 0.00 2.74
61 62 7.600752 GGAGGATGTTAGACTTCATATTGTAGC 59.399 40.741 0.00 0.00 0.00 3.58
62 63 7.445945 AGGATGTTAGACTTCATATTGTAGCC 58.554 38.462 0.00 0.00 0.00 3.93
63 64 6.651225 GGATGTTAGACTTCATATTGTAGCCC 59.349 42.308 0.00 0.00 0.00 5.19
64 65 5.925509 TGTTAGACTTCATATTGTAGCCCC 58.074 41.667 0.00 0.00 0.00 5.80
65 66 5.427157 TGTTAGACTTCATATTGTAGCCCCA 59.573 40.000 0.00 0.00 0.00 4.96
66 67 4.423625 AGACTTCATATTGTAGCCCCAC 57.576 45.455 0.00 0.00 0.00 4.61
67 68 4.040755 AGACTTCATATTGTAGCCCCACT 58.959 43.478 0.00 0.00 0.00 4.00
68 69 4.130118 GACTTCATATTGTAGCCCCACTG 58.870 47.826 0.00 0.00 0.00 3.66
69 70 3.523564 ACTTCATATTGTAGCCCCACTGT 59.476 43.478 0.00 0.00 0.00 3.55
70 71 3.558931 TCATATTGTAGCCCCACTGTG 57.441 47.619 0.00 0.00 0.00 3.66
71 72 2.843730 TCATATTGTAGCCCCACTGTGT 59.156 45.455 7.08 0.00 0.00 3.72
72 73 4.034410 TCATATTGTAGCCCCACTGTGTA 58.966 43.478 7.08 0.00 0.00 2.90
73 74 4.471747 TCATATTGTAGCCCCACTGTGTAA 59.528 41.667 7.08 0.00 0.00 2.41
74 75 5.131977 TCATATTGTAGCCCCACTGTGTAAT 59.868 40.000 7.08 0.00 0.00 1.89
75 76 3.343941 TTGTAGCCCCACTGTGTAATC 57.656 47.619 7.08 0.00 0.00 1.75
76 77 1.557832 TGTAGCCCCACTGTGTAATCC 59.442 52.381 7.08 0.00 0.00 3.01
77 78 1.557832 GTAGCCCCACTGTGTAATCCA 59.442 52.381 7.08 0.00 0.00 3.41
78 79 1.298953 AGCCCCACTGTGTAATCCAT 58.701 50.000 7.08 0.00 0.00 3.41
79 80 2.487775 AGCCCCACTGTGTAATCCATA 58.512 47.619 7.08 0.00 0.00 2.74
80 81 2.172717 AGCCCCACTGTGTAATCCATAC 59.827 50.000 7.08 0.00 34.92 2.39
81 82 2.748465 GCCCCACTGTGTAATCCATACC 60.748 54.545 7.08 0.00 33.27 2.73
82 83 2.484770 CCCCACTGTGTAATCCATACCG 60.485 54.545 7.08 0.00 33.27 4.02
83 84 2.169769 CCCACTGTGTAATCCATACCGT 59.830 50.000 7.08 0.00 33.27 4.83
84 85 3.385433 CCCACTGTGTAATCCATACCGTA 59.615 47.826 7.08 0.00 33.27 4.02
85 86 4.039973 CCCACTGTGTAATCCATACCGTAT 59.960 45.833 7.08 0.00 33.27 3.06
86 87 5.454187 CCCACTGTGTAATCCATACCGTATT 60.454 44.000 7.08 0.00 33.27 1.89
87 88 5.465390 CCACTGTGTAATCCATACCGTATTG 59.535 44.000 7.08 0.00 33.27 1.90
88 89 6.277605 CACTGTGTAATCCATACCGTATTGA 58.722 40.000 0.00 0.00 33.27 2.57
89 90 6.929049 CACTGTGTAATCCATACCGTATTGAT 59.071 38.462 0.00 0.26 33.27 2.57
90 91 8.085909 CACTGTGTAATCCATACCGTATTGATA 58.914 37.037 5.72 0.00 33.27 2.15
91 92 8.812972 ACTGTGTAATCCATACCGTATTGATAT 58.187 33.333 5.72 1.26 33.27 1.63
94 95 9.745880 GTGTAATCCATACCGTATTGATATAGG 57.254 37.037 5.72 0.00 33.27 2.57
95 96 9.703677 TGTAATCCATACCGTATTGATATAGGA 57.296 33.333 5.72 0.97 33.27 2.94
96 97 9.962783 GTAATCCATACCGTATTGATATAGGAC 57.037 37.037 5.72 0.00 0.00 3.85
97 98 8.840200 AATCCATACCGTATTGATATAGGACT 57.160 34.615 5.72 0.00 0.00 3.85
98 99 9.931698 AATCCATACCGTATTGATATAGGACTA 57.068 33.333 5.72 0.00 0.00 2.59
118 119 7.897864 GGACTATATATATGTGATAGGCCACC 58.102 42.308 16.51 0.00 46.71 4.61
119 120 7.038941 GGACTATATATATGTGATAGGCCACCC 60.039 44.444 16.51 0.00 46.71 4.61
120 121 6.787957 ACTATATATATGTGATAGGCCACCCC 59.212 42.308 5.01 0.00 36.26 4.95
121 122 2.132303 ATATGTGATAGGCCACCCCA 57.868 50.000 5.01 0.00 36.26 4.96
122 123 2.132303 TATGTGATAGGCCACCCCAT 57.868 50.000 5.01 2.71 36.26 4.00
123 124 2.132303 ATGTGATAGGCCACCCCATA 57.868 50.000 5.01 0.00 36.26 2.74
124 125 1.434188 TGTGATAGGCCACCCCATAG 58.566 55.000 5.01 0.00 36.26 2.23
125 126 1.061735 TGTGATAGGCCACCCCATAGA 60.062 52.381 5.01 0.00 36.26 1.98
126 127 1.625818 GTGATAGGCCACCCCATAGAG 59.374 57.143 5.01 0.00 35.39 2.43
127 128 1.280457 GATAGGCCACCCCATAGAGG 58.720 60.000 5.01 0.00 35.39 3.69
137 138 3.483954 CCATAGAGGGTTGTGCCAG 57.516 57.895 0.00 0.00 39.65 4.85
138 139 0.620556 CCATAGAGGGTTGTGCCAGT 59.379 55.000 0.00 0.00 39.65 4.00
139 140 1.004745 CCATAGAGGGTTGTGCCAGTT 59.995 52.381 0.00 0.00 39.65 3.16
140 141 2.359900 CATAGAGGGTTGTGCCAGTTC 58.640 52.381 0.00 0.00 39.65 3.01
141 142 0.690762 TAGAGGGTTGTGCCAGTTCC 59.309 55.000 0.00 0.00 39.65 3.62
142 143 1.603739 GAGGGTTGTGCCAGTTCCC 60.604 63.158 0.00 0.00 39.65 3.97
143 144 2.600470 GGGTTGTGCCAGTTCCCC 60.600 66.667 0.00 0.00 39.65 4.81
144 145 2.197324 GGTTGTGCCAGTTCCCCA 59.803 61.111 0.00 0.00 37.17 4.96
145 146 1.456705 GGTTGTGCCAGTTCCCCAA 60.457 57.895 0.00 0.00 37.17 4.12
146 147 1.045911 GGTTGTGCCAGTTCCCCAAA 61.046 55.000 0.00 0.00 37.17 3.28
147 148 0.827368 GTTGTGCCAGTTCCCCAAAA 59.173 50.000 0.00 0.00 0.00 2.44
148 149 1.208293 GTTGTGCCAGTTCCCCAAAAA 59.792 47.619 0.00 0.00 0.00 1.94
149 150 1.799933 TGTGCCAGTTCCCCAAAAAT 58.200 45.000 0.00 0.00 0.00 1.82
150 151 1.691434 TGTGCCAGTTCCCCAAAAATC 59.309 47.619 0.00 0.00 0.00 2.17
151 152 1.001974 GTGCCAGTTCCCCAAAAATCC 59.998 52.381 0.00 0.00 0.00 3.01
152 153 1.132881 TGCCAGTTCCCCAAAAATCCT 60.133 47.619 0.00 0.00 0.00 3.24
153 154 2.110899 TGCCAGTTCCCCAAAAATCCTA 59.889 45.455 0.00 0.00 0.00 2.94
154 155 3.245948 TGCCAGTTCCCCAAAAATCCTAT 60.246 43.478 0.00 0.00 0.00 2.57
155 156 3.132824 GCCAGTTCCCCAAAAATCCTATG 59.867 47.826 0.00 0.00 0.00 2.23
156 157 4.352893 CCAGTTCCCCAAAAATCCTATGT 58.647 43.478 0.00 0.00 0.00 2.29
157 158 4.402474 CCAGTTCCCCAAAAATCCTATGTC 59.598 45.833 0.00 0.00 0.00 3.06
158 159 5.264395 CAGTTCCCCAAAAATCCTATGTCT 58.736 41.667 0.00 0.00 0.00 3.41
159 160 5.716703 CAGTTCCCCAAAAATCCTATGTCTT 59.283 40.000 0.00 0.00 0.00 3.01
160 161 6.889722 CAGTTCCCCAAAAATCCTATGTCTTA 59.110 38.462 0.00 0.00 0.00 2.10
161 162 6.890268 AGTTCCCCAAAAATCCTATGTCTTAC 59.110 38.462 0.00 0.00 0.00 2.34
162 163 6.395780 TCCCCAAAAATCCTATGTCTTACA 57.604 37.500 0.00 0.00 0.00 2.41
163 164 6.184789 TCCCCAAAAATCCTATGTCTTACAC 58.815 40.000 0.00 0.00 0.00 2.90
164 165 5.359860 CCCCAAAAATCCTATGTCTTACACC 59.640 44.000 0.00 0.00 0.00 4.16
165 166 5.065988 CCCAAAAATCCTATGTCTTACACCG 59.934 44.000 0.00 0.00 0.00 4.94
166 167 5.878116 CCAAAAATCCTATGTCTTACACCGA 59.122 40.000 0.00 0.00 0.00 4.69
167 168 6.183360 CCAAAAATCCTATGTCTTACACCGAC 60.183 42.308 0.00 0.00 0.00 4.79
168 169 4.667519 AATCCTATGTCTTACACCGACC 57.332 45.455 0.00 0.00 0.00 4.79
169 170 2.381911 TCCTATGTCTTACACCGACCC 58.618 52.381 0.00 0.00 0.00 4.46
170 171 2.104967 CCTATGTCTTACACCGACCCA 58.895 52.381 0.00 0.00 0.00 4.51
171 172 2.159142 CCTATGTCTTACACCGACCCAC 60.159 54.545 0.00 0.00 0.00 4.61
172 173 0.611714 ATGTCTTACACCGACCCACC 59.388 55.000 0.00 0.00 0.00 4.61
173 174 0.470456 TGTCTTACACCGACCCACCT 60.470 55.000 0.00 0.00 0.00 4.00
174 175 1.203038 TGTCTTACACCGACCCACCTA 60.203 52.381 0.00 0.00 0.00 3.08
175 176 1.203287 GTCTTACACCGACCCACCTAC 59.797 57.143 0.00 0.00 0.00 3.18
176 177 1.076024 TCTTACACCGACCCACCTACT 59.924 52.381 0.00 0.00 0.00 2.57
177 178 1.203994 CTTACACCGACCCACCTACTG 59.796 57.143 0.00 0.00 0.00 2.74
178 179 0.405198 TACACCGACCCACCTACTGA 59.595 55.000 0.00 0.00 0.00 3.41
179 180 0.470456 ACACCGACCCACCTACTGAA 60.470 55.000 0.00 0.00 0.00 3.02
180 181 0.037605 CACCGACCCACCTACTGAAC 60.038 60.000 0.00 0.00 0.00 3.18
181 182 0.178941 ACCGACCCACCTACTGAACT 60.179 55.000 0.00 0.00 0.00 3.01
182 183 0.974383 CCGACCCACCTACTGAACTT 59.026 55.000 0.00 0.00 0.00 2.66
183 184 1.346722 CCGACCCACCTACTGAACTTT 59.653 52.381 0.00 0.00 0.00 2.66
184 185 2.413837 CGACCCACCTACTGAACTTTG 58.586 52.381 0.00 0.00 0.00 2.77
185 186 2.152016 GACCCACCTACTGAACTTTGC 58.848 52.381 0.00 0.00 0.00 3.68
186 187 1.202891 ACCCACCTACTGAACTTTGCC 60.203 52.381 0.00 0.00 0.00 4.52
187 188 1.202879 CCCACCTACTGAACTTTGCCA 60.203 52.381 0.00 0.00 0.00 4.92
188 189 2.555227 CCCACCTACTGAACTTTGCCAT 60.555 50.000 0.00 0.00 0.00 4.40
189 190 2.749621 CCACCTACTGAACTTTGCCATC 59.250 50.000 0.00 0.00 0.00 3.51
190 191 2.416547 CACCTACTGAACTTTGCCATCG 59.583 50.000 0.00 0.00 0.00 3.84
191 192 2.301870 ACCTACTGAACTTTGCCATCGA 59.698 45.455 0.00 0.00 0.00 3.59
192 193 3.244422 ACCTACTGAACTTTGCCATCGAA 60.244 43.478 0.00 0.00 0.00 3.71
193 194 3.125316 CCTACTGAACTTTGCCATCGAAC 59.875 47.826 0.00 0.00 0.00 3.95
194 195 2.571212 ACTGAACTTTGCCATCGAACA 58.429 42.857 0.00 0.00 0.00 3.18
195 196 2.549754 ACTGAACTTTGCCATCGAACAG 59.450 45.455 0.00 0.00 0.00 3.16
196 197 1.266718 TGAACTTTGCCATCGAACAGC 59.733 47.619 0.00 0.00 0.00 4.40
197 198 1.266718 GAACTTTGCCATCGAACAGCA 59.733 47.619 3.53 3.53 33.97 4.41
198 199 0.877071 ACTTTGCCATCGAACAGCAG 59.123 50.000 7.34 1.28 37.89 4.24
199 200 0.877071 CTTTGCCATCGAACAGCAGT 59.123 50.000 7.34 0.00 37.89 4.40
200 201 1.267806 CTTTGCCATCGAACAGCAGTT 59.732 47.619 7.34 0.00 41.64 3.16
201 202 0.592637 TTGCCATCGAACAGCAGTTG 59.407 50.000 0.00 0.00 38.30 3.16
202 203 1.236616 TGCCATCGAACAGCAGTTGG 61.237 55.000 0.00 0.00 38.30 3.77
203 204 1.926511 GCCATCGAACAGCAGTTGGG 61.927 60.000 0.00 0.00 38.30 4.12
204 205 0.321564 CCATCGAACAGCAGTTGGGA 60.322 55.000 0.00 0.00 38.30 4.37
205 206 1.522668 CATCGAACAGCAGTTGGGAA 58.477 50.000 0.00 0.00 38.30 3.97
206 207 1.879380 CATCGAACAGCAGTTGGGAAA 59.121 47.619 0.00 0.00 38.30 3.13
207 208 1.593196 TCGAACAGCAGTTGGGAAAG 58.407 50.000 0.00 0.00 38.30 2.62
208 209 1.140052 TCGAACAGCAGTTGGGAAAGA 59.860 47.619 0.00 0.00 38.30 2.52
209 210 1.946768 CGAACAGCAGTTGGGAAAGAA 59.053 47.619 0.00 0.00 38.30 2.52
210 211 2.554032 CGAACAGCAGTTGGGAAAGAAT 59.446 45.455 0.00 0.00 38.30 2.40
211 212 3.751175 CGAACAGCAGTTGGGAAAGAATA 59.249 43.478 0.00 0.00 38.30 1.75
212 213 4.378459 CGAACAGCAGTTGGGAAAGAATAC 60.378 45.833 0.00 0.00 38.30 1.89
213 214 3.074412 ACAGCAGTTGGGAAAGAATACG 58.926 45.455 0.00 0.00 0.00 3.06
214 215 2.420022 CAGCAGTTGGGAAAGAATACGG 59.580 50.000 0.00 0.00 0.00 4.02
215 216 2.304761 AGCAGTTGGGAAAGAATACGGA 59.695 45.455 0.00 0.00 0.00 4.69
216 217 2.678336 GCAGTTGGGAAAGAATACGGAG 59.322 50.000 0.00 0.00 0.00 4.63
217 218 3.618997 GCAGTTGGGAAAGAATACGGAGA 60.619 47.826 0.00 0.00 0.00 3.71
218 219 4.770795 CAGTTGGGAAAGAATACGGAGAT 58.229 43.478 0.00 0.00 0.00 2.75
219 220 5.186198 CAGTTGGGAAAGAATACGGAGATT 58.814 41.667 0.00 0.00 0.00 2.40
220 221 5.648092 CAGTTGGGAAAGAATACGGAGATTT 59.352 40.000 0.00 0.00 0.00 2.17
221 222 6.151144 CAGTTGGGAAAGAATACGGAGATTTT 59.849 38.462 0.00 0.00 0.00 1.82
222 223 6.719829 AGTTGGGAAAGAATACGGAGATTTTT 59.280 34.615 0.00 0.00 0.00 1.94
257 258 3.992943 AAATACGGAGATGGTTCCACA 57.007 42.857 0.00 0.00 37.05 4.17
258 259 4.503714 AAATACGGAGATGGTTCCACAT 57.496 40.909 0.00 0.00 37.05 3.21
259 260 2.979814 TACGGAGATGGTTCCACATG 57.020 50.000 0.00 0.00 37.05 3.21
260 261 0.984230 ACGGAGATGGTTCCACATGT 59.016 50.000 0.00 0.00 37.05 3.21
261 262 2.184533 ACGGAGATGGTTCCACATGTA 58.815 47.619 0.00 0.00 37.05 2.29
262 263 2.093658 ACGGAGATGGTTCCACATGTAC 60.094 50.000 0.00 0.00 37.05 2.90
263 264 2.550978 GGAGATGGTTCCACATGTACG 58.449 52.381 0.00 0.00 37.20 3.67
264 265 2.093658 GGAGATGGTTCCACATGTACGT 60.094 50.000 0.00 0.00 37.20 3.57
265 266 3.131577 GGAGATGGTTCCACATGTACGTA 59.868 47.826 0.00 0.00 37.20 3.57
266 267 4.382254 GGAGATGGTTCCACATGTACGTAA 60.382 45.833 0.00 0.00 37.20 3.18
267 268 5.353394 AGATGGTTCCACATGTACGTAAT 57.647 39.130 0.00 0.00 0.00 1.89
268 269 5.741011 AGATGGTTCCACATGTACGTAATT 58.259 37.500 0.00 0.00 0.00 1.40
269 270 6.177610 AGATGGTTCCACATGTACGTAATTT 58.822 36.000 0.00 0.00 0.00 1.82
270 271 5.866335 TGGTTCCACATGTACGTAATTTC 57.134 39.130 0.00 0.00 0.00 2.17
271 272 5.553123 TGGTTCCACATGTACGTAATTTCT 58.447 37.500 0.00 0.00 0.00 2.52
272 273 6.699366 TGGTTCCACATGTACGTAATTTCTA 58.301 36.000 0.00 0.00 0.00 2.10
273 274 7.160049 TGGTTCCACATGTACGTAATTTCTAA 58.840 34.615 0.00 0.00 0.00 2.10
274 275 7.118101 TGGTTCCACATGTACGTAATTTCTAAC 59.882 37.037 0.00 0.00 0.00 2.34
275 276 6.874297 TCCACATGTACGTAATTTCTAACG 57.126 37.500 0.00 0.00 44.47 3.18
276 277 6.619744 TCCACATGTACGTAATTTCTAACGA 58.380 36.000 0.00 0.00 41.55 3.85
277 278 7.089538 TCCACATGTACGTAATTTCTAACGAA 58.910 34.615 0.00 0.00 41.55 3.85
278 279 7.274033 TCCACATGTACGTAATTTCTAACGAAG 59.726 37.037 0.00 0.00 41.55 3.79
279 280 6.892951 CACATGTACGTAATTTCTAACGAAGC 59.107 38.462 0.00 0.00 41.55 3.86
280 281 6.035327 ACATGTACGTAATTTCTAACGAAGCC 59.965 38.462 0.00 0.00 41.55 4.35
281 282 5.468592 TGTACGTAATTTCTAACGAAGCCA 58.531 37.500 5.54 0.00 41.55 4.75
282 283 4.916099 ACGTAATTTCTAACGAAGCCAC 57.084 40.909 5.54 0.00 41.55 5.01
283 284 4.309099 ACGTAATTTCTAACGAAGCCACA 58.691 39.130 5.54 0.00 41.55 4.17
284 285 4.751098 ACGTAATTTCTAACGAAGCCACAA 59.249 37.500 5.54 0.00 41.55 3.33
285 286 5.236911 ACGTAATTTCTAACGAAGCCACAAA 59.763 36.000 5.54 0.00 41.55 2.83
286 287 5.788531 CGTAATTTCTAACGAAGCCACAAAG 59.211 40.000 0.00 0.00 41.55 2.77
287 288 5.767816 AATTTCTAACGAAGCCACAAAGT 57.232 34.783 0.00 0.00 0.00 2.66
288 289 6.870971 AATTTCTAACGAAGCCACAAAGTA 57.129 33.333 0.00 0.00 0.00 2.24
289 290 5.662211 TTTCTAACGAAGCCACAAAGTAC 57.338 39.130 0.00 0.00 0.00 2.73
290 291 3.311106 TCTAACGAAGCCACAAAGTACG 58.689 45.455 0.00 0.00 0.00 3.67
291 292 1.944032 AACGAAGCCACAAAGTACGT 58.056 45.000 0.00 0.00 0.00 3.57
292 293 1.494824 ACGAAGCCACAAAGTACGTC 58.505 50.000 0.00 0.00 0.00 4.34
293 294 1.068127 ACGAAGCCACAAAGTACGTCT 59.932 47.619 0.00 0.00 0.00 4.18
299 300 1.944024 CCACAAAGTACGTCTGGCAAA 59.056 47.619 0.00 0.00 0.00 3.68
317 318 3.186613 GCAAAGGCCAGCTATATTCGTAC 59.813 47.826 5.01 0.00 0.00 3.67
318 319 3.299340 AAGGCCAGCTATATTCGTACG 57.701 47.619 9.53 9.53 0.00 3.67
324 326 4.720090 CCAGCTATATTCGTACGTACCAG 58.280 47.826 19.67 7.18 0.00 4.00
342 344 2.031157 CCAGGAAAACCGTAGCAAGTTG 60.031 50.000 0.00 0.00 0.00 3.16
385 387 1.981256 AAGAAAGACCCACACGCATT 58.019 45.000 0.00 0.00 0.00 3.56
429 436 3.243434 CCATGATTTGATGGCTCTGCTTC 60.243 47.826 0.00 0.00 36.69 3.86
453 460 4.631377 TGTTTTGTTGCAGGAGATCTATCG 59.369 41.667 0.00 0.00 0.00 2.92
572 597 7.149288 CGAAAATCTGCTACACTTTCTTTTTCG 60.149 37.037 10.88 10.88 43.20 3.46
647 674 3.936203 AGCCAACCGGACGAGCAA 61.936 61.111 9.46 0.00 0.00 3.91
659 686 2.331451 GAGCAACCGTGGTGCAAC 59.669 61.111 14.93 0.00 35.00 4.17
771 2879 0.521735 CGTGCAGCCTTTTTACCTCC 59.478 55.000 0.00 0.00 0.00 4.30
776 2884 1.000496 AGCCTTTTTACCTCCTCCCC 59.000 55.000 0.00 0.00 0.00 4.81
962 3117 2.029666 CGGTCGCCATCCATCTCC 59.970 66.667 0.00 0.00 0.00 3.71
989 3148 4.877823 CCTGATCGAGAATTCAATTCACCA 59.122 41.667 12.74 0.00 41.71 4.17
1053 3212 0.805322 CGCTCTGCTTCGCTCATTCT 60.805 55.000 0.00 0.00 0.00 2.40
1065 3224 0.107703 CTCATTCTTGCCCGGTAGCA 60.108 55.000 0.00 0.00 42.17 3.49
1356 5279 2.126965 GTGTGGTCGTCGTCGAGG 60.127 66.667 4.68 8.62 46.96 4.63
1391 5326 1.343465 GGAGGAGGAGTCGAACAACAA 59.657 52.381 0.00 0.00 0.00 2.83
1392 5327 2.405172 GAGGAGGAGTCGAACAACAAC 58.595 52.381 0.00 0.00 0.00 3.32
1393 5328 1.760613 AGGAGGAGTCGAACAACAACA 59.239 47.619 0.00 0.00 0.00 3.33
1394 5329 2.169769 AGGAGGAGTCGAACAACAACAA 59.830 45.455 0.00 0.00 0.00 2.83
1395 5330 2.287103 GGAGGAGTCGAACAACAACAAC 59.713 50.000 0.00 0.00 0.00 3.32
1396 5331 2.933906 GAGGAGTCGAACAACAACAACA 59.066 45.455 0.00 0.00 0.00 3.33
1397 5332 3.340034 AGGAGTCGAACAACAACAACAA 58.660 40.909 0.00 0.00 0.00 2.83
1398 5333 3.126343 AGGAGTCGAACAACAACAACAAC 59.874 43.478 0.00 0.00 0.00 3.32
1399 5334 3.120130 GGAGTCGAACAACAACAACAACA 60.120 43.478 0.00 0.00 0.00 3.33
1400 5335 4.468643 GAGTCGAACAACAACAACAACAA 58.531 39.130 0.00 0.00 0.00 2.83
1401 5336 4.223659 AGTCGAACAACAACAACAACAAC 58.776 39.130 0.00 0.00 0.00 3.32
1402 5337 3.975670 GTCGAACAACAACAACAACAACA 59.024 39.130 0.00 0.00 0.00 3.33
1403 5338 4.441415 GTCGAACAACAACAACAACAACAA 59.559 37.500 0.00 0.00 0.00 2.83
1404 5339 4.441415 TCGAACAACAACAACAACAACAAC 59.559 37.500 0.00 0.00 0.00 3.32
1662 6953 2.297698 TCTACTTCTGGAACCGGACA 57.702 50.000 9.46 2.84 0.00 4.02
2372 7699 3.136763 TGAGCAGAGCAAACAAGAAGAG 58.863 45.455 0.00 0.00 0.00 2.85
2418 7745 2.024868 CGTCGGAATCGTGTTGGCA 61.025 57.895 0.00 0.00 37.69 4.92
2578 7905 0.319555 CGCCACCAAGAACTTCTCGA 60.320 55.000 0.00 0.00 0.00 4.04
3036 8400 2.539081 GCTGGTGGGGAGGGACTTT 61.539 63.158 0.00 0.00 41.55 2.66
3144 8508 1.479323 GTGTACAGCTTCGGGATGGTA 59.521 52.381 0.00 0.00 35.35 3.25
3641 9060 8.238631 CAGTATGTGATATGATCTGAGAGACTG 58.761 40.741 0.00 0.00 0.00 3.51
3741 9160 1.019278 TGCAAGTCGATTTCTCCGCC 61.019 55.000 0.00 0.00 0.00 6.13
3764 9183 6.834133 CGTCAAATAGATACTTACGGATCG 57.166 41.667 0.00 0.00 0.00 3.69
3765 9184 5.283247 CGTCAAATAGATACTTACGGATCGC 59.717 44.000 0.00 0.00 0.00 4.58
3766 9185 6.380190 GTCAAATAGATACTTACGGATCGCT 58.620 40.000 0.00 0.00 0.00 4.93
3767 9186 7.524912 GTCAAATAGATACTTACGGATCGCTA 58.475 38.462 0.00 0.00 0.00 4.26
3768 9187 8.182881 GTCAAATAGATACTTACGGATCGCTAT 58.817 37.037 0.00 0.00 0.00 2.97
3769 9188 9.387257 TCAAATAGATACTTACGGATCGCTATA 57.613 33.333 0.00 0.00 0.00 1.31
3770 9189 9.435802 CAAATAGATACTTACGGATCGCTATAC 57.564 37.037 0.00 0.00 0.00 1.47
3771 9190 8.728337 AATAGATACTTACGGATCGCTATACA 57.272 34.615 0.00 0.00 0.00 2.29
3772 9191 8.728337 ATAGATACTTACGGATCGCTATACAA 57.272 34.615 0.00 0.00 0.00 2.41
3773 9192 7.074507 AGATACTTACGGATCGCTATACAAG 57.925 40.000 0.00 0.00 0.00 3.16
3774 9193 4.500603 ACTTACGGATCGCTATACAAGG 57.499 45.455 0.00 0.00 0.00 3.61
3775 9194 3.887716 ACTTACGGATCGCTATACAAGGT 59.112 43.478 0.00 0.00 0.00 3.50
3776 9195 2.795175 ACGGATCGCTATACAAGGTG 57.205 50.000 0.00 0.00 0.00 4.00
3777 9196 2.304092 ACGGATCGCTATACAAGGTGA 58.696 47.619 0.00 0.00 0.00 4.02
3778 9197 2.691526 ACGGATCGCTATACAAGGTGAA 59.308 45.455 0.00 0.00 0.00 3.18
3779 9198 3.131577 ACGGATCGCTATACAAGGTGAAA 59.868 43.478 0.00 0.00 0.00 2.69
3780 9199 4.202223 ACGGATCGCTATACAAGGTGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
3781 9200 5.010314 ACGGATCGCTATACAAGGTGAAATA 59.990 40.000 0.00 0.00 0.00 1.40
3782 9201 5.573282 CGGATCGCTATACAAGGTGAAATAG 59.427 44.000 0.00 0.00 0.00 1.73
3783 9202 6.569801 CGGATCGCTATACAAGGTGAAATAGA 60.570 42.308 0.00 0.00 0.00 1.98
3784 9203 7.324178 GGATCGCTATACAAGGTGAAATAGAT 58.676 38.462 0.00 0.00 0.00 1.98
3785 9204 7.276658 GGATCGCTATACAAGGTGAAATAGATG 59.723 40.741 0.00 0.00 0.00 2.90
3786 9205 7.284919 TCGCTATACAAGGTGAAATAGATGA 57.715 36.000 0.00 0.00 0.00 2.92
3787 9206 7.722363 TCGCTATACAAGGTGAAATAGATGAA 58.278 34.615 0.00 0.00 0.00 2.57
3788 9207 8.201464 TCGCTATACAAGGTGAAATAGATGAAA 58.799 33.333 0.00 0.00 0.00 2.69
3789 9208 8.993121 CGCTATACAAGGTGAAATAGATGAAAT 58.007 33.333 0.00 0.00 0.00 2.17
3856 9275 4.766404 AGTCGCCTGAACAAATTTTAGG 57.234 40.909 0.00 0.00 0.00 2.69
3859 9278 3.504520 TCGCCTGAACAAATTTTAGGGTC 59.495 43.478 8.70 0.00 0.00 4.46
3860 9279 3.254657 CGCCTGAACAAATTTTAGGGTCA 59.745 43.478 8.70 3.15 0.00 4.02
3861 9280 4.082245 CGCCTGAACAAATTTTAGGGTCAT 60.082 41.667 8.70 0.00 0.00 3.06
3968 9455 2.363795 CACCGGGACCTAGGCTGA 60.364 66.667 9.30 0.00 0.00 4.26
4019 9514 1.855295 TGCATGCTGGGTGATTCATT 58.145 45.000 20.33 0.00 0.00 2.57
4094 9589 7.673810 TTAAATAGTGTCACATGATCGTACG 57.326 36.000 9.53 9.53 0.00 3.67
4106 9604 6.953743 CACATGATCGTACGAAAGGTAAAAAG 59.046 38.462 23.56 5.67 31.61 2.27
4418 10332 3.796178 ACACAACTTGCACTAAAATTGCG 59.204 39.130 0.00 0.00 43.34 4.85
4420 10334 3.052036 CAACTTGCACTAAAATTGCGCT 58.948 40.909 9.73 0.00 43.34 5.92
4497 10412 8.648693 ACTATAATTTACACACATACTCCCTCC 58.351 37.037 0.00 0.00 0.00 4.30
4498 10413 3.880047 TTTACACACATACTCCCTCCG 57.120 47.619 0.00 0.00 0.00 4.63
4499 10414 2.519771 TACACACATACTCCCTCCGT 57.480 50.000 0.00 0.00 0.00 4.69
4500 10415 1.640917 ACACACATACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
4501 10416 1.549170 ACACACATACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
4502 10417 1.134788 CACACATACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
4503 10418 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
4504 10419 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
4505 10420 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
4506 10421 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
4507 10422 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
4508 10423 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
4509 10424 5.132144 ACATACTCCCTCCGTTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
4510 10425 6.328148 ACATACTCCCTCCGTTCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
4511 10426 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
4512 10427 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
4513 10428 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.402155 ACTCACTCCTGAAGCATCTAGAAG 59.598 45.833 0.00 0.00 0.00 2.85
2 3 4.348486 ACTCACTCCTGAAGCATCTAGAA 58.652 43.478 0.00 0.00 0.00 2.10
3 4 3.974719 ACTCACTCCTGAAGCATCTAGA 58.025 45.455 0.00 0.00 0.00 2.43
4 5 4.734398 AACTCACTCCTGAAGCATCTAG 57.266 45.455 0.00 0.00 0.00 2.43
5 6 5.952347 TCTTAACTCACTCCTGAAGCATCTA 59.048 40.000 0.00 0.00 0.00 1.98
6 7 4.774726 TCTTAACTCACTCCTGAAGCATCT 59.225 41.667 0.00 0.00 0.00 2.90
8 9 5.690464 ATCTTAACTCACTCCTGAAGCAT 57.310 39.130 0.00 0.00 0.00 3.79
9 10 5.012046 TCAATCTTAACTCACTCCTGAAGCA 59.988 40.000 0.00 0.00 0.00 3.91
10 11 5.482908 TCAATCTTAACTCACTCCTGAAGC 58.517 41.667 0.00 0.00 0.00 3.86
11 12 6.105333 CCTCAATCTTAACTCACTCCTGAAG 58.895 44.000 0.00 0.00 0.00 3.02
12 13 5.046304 CCCTCAATCTTAACTCACTCCTGAA 60.046 44.000 0.00 0.00 0.00 3.02
13 14 4.467795 CCCTCAATCTTAACTCACTCCTGA 59.532 45.833 0.00 0.00 0.00 3.86
14 15 4.467795 TCCCTCAATCTTAACTCACTCCTG 59.532 45.833 0.00 0.00 0.00 3.86
15 16 4.689062 TCCCTCAATCTTAACTCACTCCT 58.311 43.478 0.00 0.00 0.00 3.69
16 17 4.141824 CCTCCCTCAATCTTAACTCACTCC 60.142 50.000 0.00 0.00 0.00 3.85
17 18 4.712337 TCCTCCCTCAATCTTAACTCACTC 59.288 45.833 0.00 0.00 0.00 3.51
18 19 4.689062 TCCTCCCTCAATCTTAACTCACT 58.311 43.478 0.00 0.00 0.00 3.41
19 20 5.104735 ACATCCTCCCTCAATCTTAACTCAC 60.105 44.000 0.00 0.00 0.00 3.51
20 21 5.032846 ACATCCTCCCTCAATCTTAACTCA 58.967 41.667 0.00 0.00 0.00 3.41
21 22 5.622346 ACATCCTCCCTCAATCTTAACTC 57.378 43.478 0.00 0.00 0.00 3.01
22 23 6.903534 TCTAACATCCTCCCTCAATCTTAACT 59.096 38.462 0.00 0.00 0.00 2.24
23 24 6.987404 GTCTAACATCCTCCCTCAATCTTAAC 59.013 42.308 0.00 0.00 0.00 2.01
24 25 6.903534 AGTCTAACATCCTCCCTCAATCTTAA 59.096 38.462 0.00 0.00 0.00 1.85
25 26 6.444704 AGTCTAACATCCTCCCTCAATCTTA 58.555 40.000 0.00 0.00 0.00 2.10
26 27 5.284582 AGTCTAACATCCTCCCTCAATCTT 58.715 41.667 0.00 0.00 0.00 2.40
27 28 4.889780 AGTCTAACATCCTCCCTCAATCT 58.110 43.478 0.00 0.00 0.00 2.40
28 29 5.129485 TGAAGTCTAACATCCTCCCTCAATC 59.871 44.000 0.00 0.00 0.00 2.67
29 30 5.032846 TGAAGTCTAACATCCTCCCTCAAT 58.967 41.667 0.00 0.00 0.00 2.57
30 31 4.425772 TGAAGTCTAACATCCTCCCTCAA 58.574 43.478 0.00 0.00 0.00 3.02
31 32 4.061131 TGAAGTCTAACATCCTCCCTCA 57.939 45.455 0.00 0.00 0.00 3.86
32 33 6.926630 ATATGAAGTCTAACATCCTCCCTC 57.073 41.667 0.00 0.00 0.00 4.30
33 34 6.617371 ACAATATGAAGTCTAACATCCTCCCT 59.383 38.462 0.00 0.00 0.00 4.20
34 35 6.831976 ACAATATGAAGTCTAACATCCTCCC 58.168 40.000 0.00 0.00 0.00 4.30
35 36 7.600752 GCTACAATATGAAGTCTAACATCCTCC 59.399 40.741 0.00 0.00 0.00 4.30
36 37 7.600752 GGCTACAATATGAAGTCTAACATCCTC 59.399 40.741 0.00 0.00 0.00 3.71
37 38 7.445945 GGCTACAATATGAAGTCTAACATCCT 58.554 38.462 0.00 0.00 0.00 3.24
38 39 6.651225 GGGCTACAATATGAAGTCTAACATCC 59.349 42.308 0.00 0.00 0.00 3.51
39 40 6.651225 GGGGCTACAATATGAAGTCTAACATC 59.349 42.308 0.00 0.00 0.00 3.06
40 41 6.101150 TGGGGCTACAATATGAAGTCTAACAT 59.899 38.462 0.00 0.00 0.00 2.71
41 42 5.427157 TGGGGCTACAATATGAAGTCTAACA 59.573 40.000 0.00 0.00 0.00 2.41
42 43 5.758784 GTGGGGCTACAATATGAAGTCTAAC 59.241 44.000 0.00 0.00 0.00 2.34
43 44 5.665812 AGTGGGGCTACAATATGAAGTCTAA 59.334 40.000 0.00 0.00 0.00 2.10
44 45 5.070446 CAGTGGGGCTACAATATGAAGTCTA 59.930 44.000 0.00 0.00 0.00 2.59
45 46 4.040755 AGTGGGGCTACAATATGAAGTCT 58.959 43.478 0.00 0.00 0.00 3.24
46 47 4.130118 CAGTGGGGCTACAATATGAAGTC 58.870 47.826 0.00 0.00 0.00 3.01
47 48 3.523564 ACAGTGGGGCTACAATATGAAGT 59.476 43.478 0.00 0.00 0.00 3.01
48 49 3.879295 CACAGTGGGGCTACAATATGAAG 59.121 47.826 0.00 0.00 0.00 3.02
49 50 3.265737 ACACAGTGGGGCTACAATATGAA 59.734 43.478 5.31 0.00 0.00 2.57
50 51 2.843730 ACACAGTGGGGCTACAATATGA 59.156 45.455 5.31 0.00 0.00 2.15
51 52 3.281727 ACACAGTGGGGCTACAATATG 57.718 47.619 5.31 0.00 0.00 1.78
52 53 5.456186 GGATTACACAGTGGGGCTACAATAT 60.456 44.000 5.31 0.00 0.00 1.28
53 54 4.141574 GGATTACACAGTGGGGCTACAATA 60.142 45.833 5.31 0.00 0.00 1.90
54 55 3.371595 GGATTACACAGTGGGGCTACAAT 60.372 47.826 5.31 0.00 0.00 2.71
55 56 2.026636 GGATTACACAGTGGGGCTACAA 60.027 50.000 5.31 0.00 0.00 2.41
56 57 1.557832 GGATTACACAGTGGGGCTACA 59.442 52.381 5.31 0.00 0.00 2.74
57 58 1.557832 TGGATTACACAGTGGGGCTAC 59.442 52.381 5.31 0.00 0.00 3.58
58 59 1.959710 TGGATTACACAGTGGGGCTA 58.040 50.000 5.31 0.00 0.00 3.93
59 60 1.298953 ATGGATTACACAGTGGGGCT 58.701 50.000 5.31 0.00 0.00 5.19
60 61 2.572290 GTATGGATTACACAGTGGGGC 58.428 52.381 5.31 0.00 0.00 5.80
61 62 2.484770 CGGTATGGATTACACAGTGGGG 60.485 54.545 5.31 0.00 31.99 4.96
62 63 2.169769 ACGGTATGGATTACACAGTGGG 59.830 50.000 5.31 0.00 31.99 4.61
63 64 3.536956 ACGGTATGGATTACACAGTGG 57.463 47.619 5.31 0.00 31.99 4.00
64 65 6.277605 TCAATACGGTATGGATTACACAGTG 58.722 40.000 0.58 0.00 31.99 3.66
65 66 6.474140 TCAATACGGTATGGATTACACAGT 57.526 37.500 0.58 0.00 31.99 3.55
68 69 9.745880 CCTATATCAATACGGTATGGATTACAC 57.254 37.037 20.24 0.00 31.41 2.90
69 70 9.703677 TCCTATATCAATACGGTATGGATTACA 57.296 33.333 20.24 6.22 31.41 2.41
70 71 9.962783 GTCCTATATCAATACGGTATGGATTAC 57.037 37.037 20.24 9.70 31.41 1.89
71 72 9.931698 AGTCCTATATCAATACGGTATGGATTA 57.068 33.333 20.24 12.45 31.41 1.75
72 73 8.840200 AGTCCTATATCAATACGGTATGGATT 57.160 34.615 20.24 12.08 31.41 3.01
91 92 9.809395 GTGGCCTATCACATATATATAGTCCTA 57.191 37.037 3.32 0.00 37.57 2.94
92 93 7.730784 GGTGGCCTATCACATATATATAGTCCT 59.269 40.741 3.32 0.00 39.27 3.85
93 94 7.038941 GGGTGGCCTATCACATATATATAGTCC 60.039 44.444 3.32 0.00 39.27 3.85
94 95 7.038941 GGGGTGGCCTATCACATATATATAGTC 60.039 44.444 3.32 0.00 39.27 2.59
95 96 6.787957 GGGGTGGCCTATCACATATATATAGT 59.212 42.308 3.32 0.00 39.27 2.12
96 97 6.787458 TGGGGTGGCCTATCACATATATATAG 59.213 42.308 3.32 0.00 39.27 1.31
97 98 6.698670 TGGGGTGGCCTATCACATATATATA 58.301 40.000 3.32 0.00 39.27 0.86
98 99 5.547599 TGGGGTGGCCTATCACATATATAT 58.452 41.667 3.32 0.00 39.27 0.86
99 100 4.966611 TGGGGTGGCCTATCACATATATA 58.033 43.478 3.32 0.00 39.27 0.86
100 101 3.814284 TGGGGTGGCCTATCACATATAT 58.186 45.455 3.32 0.00 39.27 0.86
101 102 3.283712 TGGGGTGGCCTATCACATATA 57.716 47.619 3.32 0.00 39.27 0.86
102 103 2.132303 TGGGGTGGCCTATCACATAT 57.868 50.000 3.32 0.00 39.27 1.78
103 104 2.132303 ATGGGGTGGCCTATCACATA 57.868 50.000 3.32 0.00 39.27 2.29
104 105 1.988107 CTATGGGGTGGCCTATCACAT 59.012 52.381 3.32 8.86 39.27 3.21
105 106 1.061735 TCTATGGGGTGGCCTATCACA 60.062 52.381 3.32 0.39 39.27 3.58
106 107 1.625818 CTCTATGGGGTGGCCTATCAC 59.374 57.143 3.32 0.00 36.95 3.06
107 108 1.485019 CCTCTATGGGGTGGCCTATCA 60.485 57.143 3.32 0.00 0.00 2.15
108 109 1.280457 CCTCTATGGGGTGGCCTATC 58.720 60.000 3.32 0.00 0.00 2.08
109 110 3.502086 CCTCTATGGGGTGGCCTAT 57.498 57.895 3.32 0.00 0.00 2.57
119 120 0.620556 ACTGGCACAACCCTCTATGG 59.379 55.000 0.00 0.00 38.70 2.74
120 121 2.359900 GAACTGGCACAACCCTCTATG 58.640 52.381 0.00 0.00 38.70 2.23
121 122 1.282157 GGAACTGGCACAACCCTCTAT 59.718 52.381 0.00 0.00 38.70 1.98
122 123 0.690762 GGAACTGGCACAACCCTCTA 59.309 55.000 0.00 0.00 38.70 2.43
123 124 1.456287 GGAACTGGCACAACCCTCT 59.544 57.895 0.00 0.00 38.70 3.69
124 125 1.603739 GGGAACTGGCACAACCCTC 60.604 63.158 9.87 0.00 40.97 4.30
125 126 2.520968 GGGAACTGGCACAACCCT 59.479 61.111 9.87 0.00 40.97 4.34
126 127 2.600470 GGGGAACTGGCACAACCC 60.600 66.667 8.94 8.94 42.53 4.11
127 128 1.045911 TTTGGGGAACTGGCACAACC 61.046 55.000 0.00 0.00 38.70 3.77
128 129 0.827368 TTTTGGGGAACTGGCACAAC 59.173 50.000 0.00 0.00 38.70 3.32
129 130 1.573108 TTTTTGGGGAACTGGCACAA 58.427 45.000 0.00 0.00 38.70 3.33
130 131 1.691434 GATTTTTGGGGAACTGGCACA 59.309 47.619 0.00 0.00 0.00 4.57
131 132 1.001974 GGATTTTTGGGGAACTGGCAC 59.998 52.381 0.00 0.00 0.00 5.01
132 133 1.132881 AGGATTTTTGGGGAACTGGCA 60.133 47.619 0.00 0.00 0.00 4.92
133 134 1.644509 AGGATTTTTGGGGAACTGGC 58.355 50.000 0.00 0.00 0.00 4.85
134 135 4.352893 ACATAGGATTTTTGGGGAACTGG 58.647 43.478 0.00 0.00 0.00 4.00
135 136 5.264395 AGACATAGGATTTTTGGGGAACTG 58.736 41.667 0.00 0.00 0.00 3.16
136 137 5.536497 AGACATAGGATTTTTGGGGAACT 57.464 39.130 0.00 0.00 0.00 3.01
137 138 6.661805 TGTAAGACATAGGATTTTTGGGGAAC 59.338 38.462 0.00 0.00 0.00 3.62
138 139 6.661805 GTGTAAGACATAGGATTTTTGGGGAA 59.338 38.462 0.00 0.00 0.00 3.97
139 140 6.184789 GTGTAAGACATAGGATTTTTGGGGA 58.815 40.000 0.00 0.00 0.00 4.81
140 141 5.359860 GGTGTAAGACATAGGATTTTTGGGG 59.640 44.000 0.00 0.00 0.00 4.96
141 142 5.065988 CGGTGTAAGACATAGGATTTTTGGG 59.934 44.000 0.00 0.00 0.00 4.12
142 143 5.878116 TCGGTGTAAGACATAGGATTTTTGG 59.122 40.000 0.00 0.00 0.00 3.28
143 144 6.183360 GGTCGGTGTAAGACATAGGATTTTTG 60.183 42.308 0.00 0.00 40.20 2.44
144 145 5.878669 GGTCGGTGTAAGACATAGGATTTTT 59.121 40.000 0.00 0.00 40.20 1.94
145 146 5.425630 GGTCGGTGTAAGACATAGGATTTT 58.574 41.667 0.00 0.00 40.20 1.82
146 147 4.141779 GGGTCGGTGTAAGACATAGGATTT 60.142 45.833 0.00 0.00 40.20 2.17
147 148 3.387050 GGGTCGGTGTAAGACATAGGATT 59.613 47.826 0.00 0.00 40.20 3.01
148 149 2.963782 GGGTCGGTGTAAGACATAGGAT 59.036 50.000 0.00 0.00 40.20 3.24
149 150 2.291735 TGGGTCGGTGTAAGACATAGGA 60.292 50.000 0.00 0.00 40.20 2.94
150 151 2.104967 TGGGTCGGTGTAAGACATAGG 58.895 52.381 0.00 0.00 40.20 2.57
151 152 2.159142 GGTGGGTCGGTGTAAGACATAG 60.159 54.545 0.00 0.00 40.20 2.23
152 153 1.826720 GGTGGGTCGGTGTAAGACATA 59.173 52.381 0.00 0.00 40.20 2.29
153 154 0.611714 GGTGGGTCGGTGTAAGACAT 59.388 55.000 0.00 0.00 40.20 3.06
154 155 0.470456 AGGTGGGTCGGTGTAAGACA 60.470 55.000 0.00 0.00 40.20 3.41
155 156 1.203287 GTAGGTGGGTCGGTGTAAGAC 59.797 57.143 0.00 0.00 37.86 3.01
156 157 1.076024 AGTAGGTGGGTCGGTGTAAGA 59.924 52.381 0.00 0.00 0.00 2.10
157 158 1.203994 CAGTAGGTGGGTCGGTGTAAG 59.796 57.143 0.00 0.00 0.00 2.34
158 159 1.203038 TCAGTAGGTGGGTCGGTGTAA 60.203 52.381 0.00 0.00 0.00 2.41
159 160 0.405198 TCAGTAGGTGGGTCGGTGTA 59.595 55.000 0.00 0.00 0.00 2.90
160 161 0.470456 TTCAGTAGGTGGGTCGGTGT 60.470 55.000 0.00 0.00 0.00 4.16
161 162 0.037605 GTTCAGTAGGTGGGTCGGTG 60.038 60.000 0.00 0.00 0.00 4.94
162 163 0.178941 AGTTCAGTAGGTGGGTCGGT 60.179 55.000 0.00 0.00 0.00 4.69
163 164 0.974383 AAGTTCAGTAGGTGGGTCGG 59.026 55.000 0.00 0.00 0.00 4.79
164 165 2.413837 CAAAGTTCAGTAGGTGGGTCG 58.586 52.381 0.00 0.00 0.00 4.79
165 166 2.152016 GCAAAGTTCAGTAGGTGGGTC 58.848 52.381 0.00 0.00 0.00 4.46
166 167 1.202891 GGCAAAGTTCAGTAGGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
167 168 1.202879 TGGCAAAGTTCAGTAGGTGGG 60.203 52.381 0.00 0.00 0.00 4.61
168 169 2.270352 TGGCAAAGTTCAGTAGGTGG 57.730 50.000 0.00 0.00 0.00 4.61
169 170 2.416547 CGATGGCAAAGTTCAGTAGGTG 59.583 50.000 0.00 0.00 0.00 4.00
170 171 2.301870 TCGATGGCAAAGTTCAGTAGGT 59.698 45.455 0.00 0.00 0.00 3.08
171 172 2.972625 TCGATGGCAAAGTTCAGTAGG 58.027 47.619 0.00 0.00 0.00 3.18
172 173 3.745975 TGTTCGATGGCAAAGTTCAGTAG 59.254 43.478 0.00 0.00 0.00 2.57
173 174 3.734463 TGTTCGATGGCAAAGTTCAGTA 58.266 40.909 0.00 0.00 0.00 2.74
174 175 2.549754 CTGTTCGATGGCAAAGTTCAGT 59.450 45.455 0.00 0.00 0.00 3.41
175 176 2.666619 GCTGTTCGATGGCAAAGTTCAG 60.667 50.000 0.00 0.00 0.00 3.02
176 177 1.266718 GCTGTTCGATGGCAAAGTTCA 59.733 47.619 0.00 0.00 0.00 3.18
177 178 1.266718 TGCTGTTCGATGGCAAAGTTC 59.733 47.619 0.00 0.00 32.79 3.01
178 179 1.267806 CTGCTGTTCGATGGCAAAGTT 59.732 47.619 0.00 0.00 35.49 2.66
179 180 0.877071 CTGCTGTTCGATGGCAAAGT 59.123 50.000 0.00 0.00 35.49 2.66
180 181 0.877071 ACTGCTGTTCGATGGCAAAG 59.123 50.000 0.00 0.00 35.49 2.77
181 182 1.001487 CAACTGCTGTTCGATGGCAAA 60.001 47.619 5.94 0.00 35.49 3.68
182 183 0.592637 CAACTGCTGTTCGATGGCAA 59.407 50.000 5.94 0.00 35.49 4.52
183 184 1.236616 CCAACTGCTGTTCGATGGCA 61.237 55.000 5.94 0.00 33.52 4.92
184 185 1.503542 CCAACTGCTGTTCGATGGC 59.496 57.895 5.94 0.00 33.52 4.40
185 186 0.321564 TCCCAACTGCTGTTCGATGG 60.322 55.000 5.94 5.65 33.52 3.51
186 187 1.522668 TTCCCAACTGCTGTTCGATG 58.477 50.000 5.94 0.00 33.52 3.84
187 188 2.154462 CTTTCCCAACTGCTGTTCGAT 58.846 47.619 5.94 0.00 33.52 3.59
188 189 1.140052 TCTTTCCCAACTGCTGTTCGA 59.860 47.619 5.94 2.61 33.52 3.71
189 190 1.593196 TCTTTCCCAACTGCTGTTCG 58.407 50.000 5.94 0.00 33.52 3.95
190 191 4.378459 CGTATTCTTTCCCAACTGCTGTTC 60.378 45.833 5.94 0.00 33.52 3.18
191 192 3.502211 CGTATTCTTTCCCAACTGCTGTT 59.498 43.478 2.72 2.72 36.75 3.16
192 193 3.074412 CGTATTCTTTCCCAACTGCTGT 58.926 45.455 0.00 0.00 0.00 4.40
193 194 2.420022 CCGTATTCTTTCCCAACTGCTG 59.580 50.000 0.00 0.00 0.00 4.41
194 195 2.304761 TCCGTATTCTTTCCCAACTGCT 59.695 45.455 0.00 0.00 0.00 4.24
195 196 2.678336 CTCCGTATTCTTTCCCAACTGC 59.322 50.000 0.00 0.00 0.00 4.40
196 197 4.202245 TCTCCGTATTCTTTCCCAACTG 57.798 45.455 0.00 0.00 0.00 3.16
197 198 5.437191 AATCTCCGTATTCTTTCCCAACT 57.563 39.130 0.00 0.00 0.00 3.16
198 199 6.510879 AAAATCTCCGTATTCTTTCCCAAC 57.489 37.500 0.00 0.00 0.00 3.77
235 236 4.658063 TGTGGAACCATCTCCGTATTTTT 58.342 39.130 0.00 0.00 38.44 1.94
236 237 4.295141 TGTGGAACCATCTCCGTATTTT 57.705 40.909 0.00 0.00 38.44 1.82
237 238 3.992943 TGTGGAACCATCTCCGTATTT 57.007 42.857 0.00 0.00 38.44 1.40
238 239 3.199946 ACATGTGGAACCATCTCCGTATT 59.800 43.478 0.00 0.00 38.44 1.89
239 240 2.771943 ACATGTGGAACCATCTCCGTAT 59.228 45.455 0.00 0.00 38.44 3.06
240 241 2.184533 ACATGTGGAACCATCTCCGTA 58.815 47.619 0.00 0.00 38.44 4.02
241 242 0.984230 ACATGTGGAACCATCTCCGT 59.016 50.000 0.00 0.00 38.44 4.69
242 243 2.550978 GTACATGTGGAACCATCTCCG 58.449 52.381 9.11 0.00 38.44 4.63
243 244 2.093658 ACGTACATGTGGAACCATCTCC 60.094 50.000 9.11 0.00 34.36 3.71
244 245 3.247006 ACGTACATGTGGAACCATCTC 57.753 47.619 9.11 0.00 34.36 2.75
245 246 4.811969 TTACGTACATGTGGAACCATCT 57.188 40.909 9.11 0.00 34.36 2.90
246 247 6.315393 AGAAATTACGTACATGTGGAACCATC 59.685 38.462 9.11 0.00 34.36 3.51
247 248 6.177610 AGAAATTACGTACATGTGGAACCAT 58.822 36.000 9.11 0.00 34.36 3.55
248 249 5.553123 AGAAATTACGTACATGTGGAACCA 58.447 37.500 9.11 0.00 34.36 3.67
249 250 7.458677 GTTAGAAATTACGTACATGTGGAACC 58.541 38.462 9.11 0.00 34.36 3.62
250 251 7.062138 TCGTTAGAAATTACGTACATGTGGAAC 59.938 37.037 9.11 0.00 38.79 3.62
251 252 7.089538 TCGTTAGAAATTACGTACATGTGGAA 58.910 34.615 9.11 0.00 38.79 3.53
252 253 6.619744 TCGTTAGAAATTACGTACATGTGGA 58.380 36.000 9.11 0.00 38.79 4.02
253 254 6.874297 TCGTTAGAAATTACGTACATGTGG 57.126 37.500 9.11 2.65 38.79 4.17
254 255 6.892951 GCTTCGTTAGAAATTACGTACATGTG 59.107 38.462 9.11 0.00 38.79 3.21
255 256 6.035327 GGCTTCGTTAGAAATTACGTACATGT 59.965 38.462 2.69 2.69 38.79 3.21
256 257 6.035220 TGGCTTCGTTAGAAATTACGTACATG 59.965 38.462 0.00 0.00 38.79 3.21
257 258 6.035327 GTGGCTTCGTTAGAAATTACGTACAT 59.965 38.462 0.00 0.00 38.79 2.29
258 259 5.345741 GTGGCTTCGTTAGAAATTACGTACA 59.654 40.000 0.00 0.00 38.79 2.90
259 260 5.345741 TGTGGCTTCGTTAGAAATTACGTAC 59.654 40.000 0.00 0.00 38.79 3.67
260 261 5.468592 TGTGGCTTCGTTAGAAATTACGTA 58.531 37.500 0.00 0.00 38.79 3.57
261 262 4.309099 TGTGGCTTCGTTAGAAATTACGT 58.691 39.130 0.00 0.00 38.79 3.57
262 263 4.914312 TGTGGCTTCGTTAGAAATTACG 57.086 40.909 0.00 0.00 35.71 3.18
263 264 6.665465 ACTTTGTGGCTTCGTTAGAAATTAC 58.335 36.000 0.00 0.00 35.71 1.89
264 265 6.870971 ACTTTGTGGCTTCGTTAGAAATTA 57.129 33.333 0.00 0.00 35.71 1.40
265 266 5.767816 ACTTTGTGGCTTCGTTAGAAATT 57.232 34.783 0.00 0.00 35.71 1.82
266 267 5.107220 CGTACTTTGTGGCTTCGTTAGAAAT 60.107 40.000 0.00 0.00 35.71 2.17
267 268 4.209703 CGTACTTTGTGGCTTCGTTAGAAA 59.790 41.667 0.00 0.00 35.71 2.52
268 269 3.737266 CGTACTTTGTGGCTTCGTTAGAA 59.263 43.478 0.00 0.00 34.76 2.10
269 270 3.243501 ACGTACTTTGTGGCTTCGTTAGA 60.244 43.478 0.00 0.00 0.00 2.10
270 271 3.054878 ACGTACTTTGTGGCTTCGTTAG 58.945 45.455 0.00 0.00 0.00 2.34
271 272 3.052036 GACGTACTTTGTGGCTTCGTTA 58.948 45.455 0.00 0.00 0.00 3.18
272 273 1.862827 GACGTACTTTGTGGCTTCGTT 59.137 47.619 0.00 0.00 0.00 3.85
273 274 1.068127 AGACGTACTTTGTGGCTTCGT 59.932 47.619 0.00 0.00 0.00 3.85
274 275 1.455786 CAGACGTACTTTGTGGCTTCG 59.544 52.381 0.00 0.00 0.00 3.79
275 276 1.798813 CCAGACGTACTTTGTGGCTTC 59.201 52.381 0.00 0.00 0.00 3.86
276 277 1.878953 CCAGACGTACTTTGTGGCTT 58.121 50.000 0.00 0.00 0.00 4.35
277 278 3.606886 CCAGACGTACTTTGTGGCT 57.393 52.632 0.00 0.00 0.00 4.75
278 279 1.866925 GCCAGACGTACTTTGTGGC 59.133 57.895 14.35 14.35 46.49 5.01
279 280 1.588674 TTGCCAGACGTACTTTGTGG 58.411 50.000 0.00 3.78 0.00 4.17
280 281 2.032030 CCTTTGCCAGACGTACTTTGTG 60.032 50.000 0.00 0.00 0.00 3.33
281 282 2.218603 CCTTTGCCAGACGTACTTTGT 58.781 47.619 0.00 0.00 0.00 2.83
282 283 1.069227 GCCTTTGCCAGACGTACTTTG 60.069 52.381 0.00 0.00 0.00 2.77
283 284 1.235724 GCCTTTGCCAGACGTACTTT 58.764 50.000 0.00 0.00 0.00 2.66
284 285 2.928416 GCCTTTGCCAGACGTACTT 58.072 52.632 0.00 0.00 0.00 2.24
285 286 4.695560 GCCTTTGCCAGACGTACT 57.304 55.556 0.00 0.00 0.00 2.73
299 300 2.236766 ACGTACGAATATAGCTGGCCT 58.763 47.619 24.41 0.00 0.00 5.19
317 318 1.337074 TGCTACGGTTTTCCTGGTACG 60.337 52.381 0.00 0.00 37.95 3.67
318 319 2.460757 TGCTACGGTTTTCCTGGTAC 57.539 50.000 0.00 0.00 37.95 3.34
324 326 2.046283 GCAACTTGCTACGGTTTTCC 57.954 50.000 6.50 0.00 40.96 3.13
342 344 0.319900 TCTTCAGGCTCGTTGACAGC 60.320 55.000 0.00 0.00 36.02 4.40
385 387 0.107410 GGAATGGGTGGTATGCGTCA 60.107 55.000 0.00 0.00 0.00 4.35
429 436 5.220548 CGATAGATCTCCTGCAACAAAACAG 60.221 44.000 0.00 0.00 39.76 3.16
453 460 1.282875 GGCAGGCAGACGTGAAAAC 59.717 57.895 0.00 0.00 33.41 2.43
572 597 8.006027 GCACGGTCCGAAATATATTAGTTTAAC 58.994 37.037 20.51 0.00 0.00 2.01
638 665 3.041940 CACCACGGTTGCTCGTCC 61.042 66.667 0.00 0.00 41.86 4.79
659 686 4.099266 TGGAAACAGATTTGTCACCTTTGG 59.901 41.667 11.18 0.00 36.23 3.28
771 2879 6.158598 CACAAATGTAAAATGTCAAGGGGAG 58.841 40.000 0.00 0.00 0.00 4.30
776 2884 6.158598 CCTCCCACAAATGTAAAATGTCAAG 58.841 40.000 0.00 0.00 0.00 3.02
921 3072 1.400629 GCGAGTGACACGTAGTTGCTA 60.401 52.381 4.12 0.00 41.61 3.49
962 3117 3.827008 TTGAATTCTCGATCAGGAGGG 57.173 47.619 7.05 0.00 34.74 4.30
989 3148 1.272490 TCGGCGACATGTTTTCTCTCT 59.728 47.619 4.99 0.00 0.00 3.10
1373 5308 1.760613 TGTTGTTGTTCGACTCCTCCT 59.239 47.619 0.00 0.00 0.00 3.69
1391 5326 4.505922 CAGTGTTGTTGTTGTTGTTGTTGT 59.494 37.500 0.00 0.00 0.00 3.32
1392 5327 4.608000 GCAGTGTTGTTGTTGTTGTTGTTG 60.608 41.667 0.00 0.00 0.00 3.33
1393 5328 3.492756 GCAGTGTTGTTGTTGTTGTTGTT 59.507 39.130 0.00 0.00 0.00 2.83
1394 5329 3.056304 GCAGTGTTGTTGTTGTTGTTGT 58.944 40.909 0.00 0.00 0.00 3.32
1395 5330 2.090349 CGCAGTGTTGTTGTTGTTGTTG 59.910 45.455 0.00 0.00 0.00 3.33
1396 5331 2.323959 CGCAGTGTTGTTGTTGTTGTT 58.676 42.857 0.00 0.00 0.00 2.83
1397 5332 1.402194 CCGCAGTGTTGTTGTTGTTGT 60.402 47.619 0.00 0.00 0.00 3.32
1398 5333 1.267365 CCGCAGTGTTGTTGTTGTTG 58.733 50.000 0.00 0.00 0.00 3.33
1399 5334 0.885196 ACCGCAGTGTTGTTGTTGTT 59.115 45.000 0.00 0.00 0.00 2.83
1400 5335 0.170116 CACCGCAGTGTTGTTGTTGT 59.830 50.000 0.00 0.00 39.30 3.32
1401 5336 0.449786 TCACCGCAGTGTTGTTGTTG 59.550 50.000 0.00 0.00 44.83 3.33
1402 5337 1.333619 GATCACCGCAGTGTTGTTGTT 59.666 47.619 0.00 0.00 44.83 2.83
1403 5338 0.944386 GATCACCGCAGTGTTGTTGT 59.056 50.000 0.00 0.00 44.83 3.32
1404 5339 0.238289 GGATCACCGCAGTGTTGTTG 59.762 55.000 0.00 0.00 44.83 3.33
1662 6953 3.812019 CTCCGCCAGTAGACGCGT 61.812 66.667 13.85 13.85 46.83 6.01
1815 7115 2.047179 GTCCCCTCGAACACCTGC 60.047 66.667 0.00 0.00 0.00 4.85
2418 7745 2.677524 AATGCCGCTGCCACACAT 60.678 55.556 0.00 0.00 36.33 3.21
2874 8238 4.471908 ACGCCGAGCATGATGCCA 62.472 61.111 14.72 0.00 46.52 4.92
3213 8586 4.159901 TCGCTGCCATCATCGCCA 62.160 61.111 0.00 0.00 32.42 5.69
3559 8938 2.512515 GCGCTCCTGATGTGGGAC 60.513 66.667 0.00 0.00 0.00 4.46
3707 9126 4.681744 GACTTGCACCATTTGTTTTCAGA 58.318 39.130 0.00 0.00 0.00 3.27
3741 9160 5.283247 GCGATCCGTAAGTATCTATTTGACG 59.717 44.000 0.00 0.00 0.00 4.35
3760 9179 8.029522 TCATCTATTTCACCTTGTATAGCGATC 58.970 37.037 0.00 0.00 0.00 3.69
3761 9180 7.896811 TCATCTATTTCACCTTGTATAGCGAT 58.103 34.615 0.00 0.00 0.00 4.58
3762 9181 7.284919 TCATCTATTTCACCTTGTATAGCGA 57.715 36.000 0.00 0.00 0.00 4.93
3763 9182 7.946655 TTCATCTATTTCACCTTGTATAGCG 57.053 36.000 0.00 0.00 0.00 4.26
3768 9187 9.573166 CCCATATTTCATCTATTTCACCTTGTA 57.427 33.333 0.00 0.00 0.00 2.41
3769 9188 8.281531 TCCCATATTTCATCTATTTCACCTTGT 58.718 33.333 0.00 0.00 0.00 3.16
3770 9189 8.571336 GTCCCATATTTCATCTATTTCACCTTG 58.429 37.037 0.00 0.00 0.00 3.61
3771 9190 8.506083 AGTCCCATATTTCATCTATTTCACCTT 58.494 33.333 0.00 0.00 0.00 3.50
3772 9191 7.941238 CAGTCCCATATTTCATCTATTTCACCT 59.059 37.037 0.00 0.00 0.00 4.00
3773 9192 7.939039 TCAGTCCCATATTTCATCTATTTCACC 59.061 37.037 0.00 0.00 0.00 4.02
3774 9193 8.778358 GTCAGTCCCATATTTCATCTATTTCAC 58.222 37.037 0.00 0.00 0.00 3.18
3775 9194 8.717717 AGTCAGTCCCATATTTCATCTATTTCA 58.282 33.333 0.00 0.00 0.00 2.69
3779 9198 9.331466 ACATAGTCAGTCCCATATTTCATCTAT 57.669 33.333 0.00 0.00 0.00 1.98
3780 9199 8.588472 CACATAGTCAGTCCCATATTTCATCTA 58.412 37.037 0.00 0.00 0.00 1.98
3781 9200 7.071698 ACACATAGTCAGTCCCATATTTCATCT 59.928 37.037 0.00 0.00 0.00 2.90
3782 9201 7.220030 ACACATAGTCAGTCCCATATTTCATC 58.780 38.462 0.00 0.00 0.00 2.92
3783 9202 7.141758 ACACATAGTCAGTCCCATATTTCAT 57.858 36.000 0.00 0.00 0.00 2.57
3784 9203 6.560003 ACACATAGTCAGTCCCATATTTCA 57.440 37.500 0.00 0.00 0.00 2.69
3785 9204 8.204836 ACTTACACATAGTCAGTCCCATATTTC 58.795 37.037 0.00 0.00 28.64 2.17
3786 9205 8.090788 ACTTACACATAGTCAGTCCCATATTT 57.909 34.615 0.00 0.00 28.64 1.40
3787 9206 7.676683 ACTTACACATAGTCAGTCCCATATT 57.323 36.000 0.00 0.00 28.64 1.28
3788 9207 7.344612 TCAACTTACACATAGTCAGTCCCATAT 59.655 37.037 0.00 0.00 33.66 1.78
3789 9208 6.666113 TCAACTTACACATAGTCAGTCCCATA 59.334 38.462 0.00 0.00 33.66 2.74
3790 9209 5.483937 TCAACTTACACATAGTCAGTCCCAT 59.516 40.000 0.00 0.00 33.66 4.00
3791 9210 4.836175 TCAACTTACACATAGTCAGTCCCA 59.164 41.667 0.00 0.00 33.66 4.37
4253 9765 5.296780 TGCCTCGAATTCATTCTTCCATAAC 59.703 40.000 6.22 0.00 34.69 1.89
4332 10231 9.817809 GGGTTTCATTCTTTCTTAGAAAACTTT 57.182 29.630 8.82 0.00 45.62 2.66
4490 10405 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
4491 10406 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
4492 10407 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.