Multiple sequence alignment - TraesCS6D01G148300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G148300 chr6D 100.000 2273 0 0 1 2273 121292805 121290533 0.000000e+00 4198.0
1 TraesCS6D01G148300 chr4A 95.169 1304 57 2 1 1304 19527822 19526525 0.000000e+00 2054.0
2 TraesCS6D01G148300 chr7B 95.000 1300 59 2 5 1304 740171966 740173259 0.000000e+00 2036.0
3 TraesCS6D01G148300 chr7B 94.474 1303 66 4 1 1303 433797539 433796243 0.000000e+00 2002.0
4 TraesCS6D01G148300 chr7B 80.645 217 35 6 1568 1780 31825503 31825716 6.500000e-36 161.0
5 TraesCS6D01G148300 chr3A 94.862 1304 61 3 1 1304 171251154 171249857 0.000000e+00 2032.0
6 TraesCS6D01G148300 chr3A 80.786 229 39 4 1568 1792 66436146 66436373 8.350000e-40 174.0
7 TraesCS6D01G148300 chr6B 92.402 1303 87 6 1 1303 665099335 665098045 0.000000e+00 1847.0
8 TraesCS6D01G148300 chr6B 92.222 630 44 5 1444 2070 213484471 213485098 0.000000e+00 887.0
9 TraesCS6D01G148300 chr6B 94.395 339 18 1 1304 1641 213149247 213148909 9.310000e-144 520.0
10 TraesCS6D01G148300 chr6B 77.542 236 49 4 1568 1801 693878383 693878616 3.040000e-29 139.0
11 TraesCS6D01G148300 chr1A 94.926 1143 54 1 162 1304 29199046 29197908 0.000000e+00 1786.0
12 TraesCS6D01G148300 chr4B 94.434 1060 45 8 253 1310 42140145 42141192 0.000000e+00 1618.0
13 TraesCS6D01G148300 chr7A 94.633 708 34 1 597 1304 85340421 85339718 0.000000e+00 1094.0
14 TraesCS6D01G148300 chr1B 94.877 527 23 1 778 1304 86748592 86749114 0.000000e+00 821.0
15 TraesCS6D01G148300 chr1B 87.671 219 26 1 1571 1788 452011198 452010980 1.040000e-63 254.0
16 TraesCS6D01G148300 chr2A 83.312 779 116 10 218 995 674196068 674195303 0.000000e+00 706.0
17 TraesCS6D01G148300 chr6A 88.889 216 18 4 1320 1535 162807201 162807410 6.230000e-66 261.0
18 TraesCS6D01G148300 chr6A 87.069 232 25 4 1320 1551 158307430 158307656 8.060000e-65 257.0
19 TraesCS6D01G148300 chr6A 82.474 291 36 7 1822 2110 162809570 162809847 8.110000e-60 241.0
20 TraesCS6D01G148300 chr3B 86.383 235 30 2 1568 1801 771726324 771726091 2.900000e-64 255.0
21 TraesCS6D01G148300 chr5B 81.356 236 42 2 1567 1801 657159662 657159896 8.290000e-45 191.0
22 TraesCS6D01G148300 chr3D 89.286 56 6 0 1822 1877 506207520 506207575 1.130000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G148300 chr6D 121290533 121292805 2272 True 4198 4198 100.0000 1 2273 1 chr6D.!!$R1 2272
1 TraesCS6D01G148300 chr4A 19526525 19527822 1297 True 2054 2054 95.1690 1 1304 1 chr4A.!!$R1 1303
2 TraesCS6D01G148300 chr7B 740171966 740173259 1293 False 2036 2036 95.0000 5 1304 1 chr7B.!!$F2 1299
3 TraesCS6D01G148300 chr7B 433796243 433797539 1296 True 2002 2002 94.4740 1 1303 1 chr7B.!!$R1 1302
4 TraesCS6D01G148300 chr3A 171249857 171251154 1297 True 2032 2032 94.8620 1 1304 1 chr3A.!!$R1 1303
5 TraesCS6D01G148300 chr6B 665098045 665099335 1290 True 1847 1847 92.4020 1 1303 1 chr6B.!!$R2 1302
6 TraesCS6D01G148300 chr6B 213484471 213485098 627 False 887 887 92.2220 1444 2070 1 chr6B.!!$F1 626
7 TraesCS6D01G148300 chr1A 29197908 29199046 1138 True 1786 1786 94.9260 162 1304 1 chr1A.!!$R1 1142
8 TraesCS6D01G148300 chr4B 42140145 42141192 1047 False 1618 1618 94.4340 253 1310 1 chr4B.!!$F1 1057
9 TraesCS6D01G148300 chr7A 85339718 85340421 703 True 1094 1094 94.6330 597 1304 1 chr7A.!!$R1 707
10 TraesCS6D01G148300 chr1B 86748592 86749114 522 False 821 821 94.8770 778 1304 1 chr1B.!!$F1 526
11 TraesCS6D01G148300 chr2A 674195303 674196068 765 True 706 706 83.3120 218 995 1 chr2A.!!$R1 777
12 TraesCS6D01G148300 chr6A 162807201 162809847 2646 False 251 261 85.6815 1320 2110 2 chr6A.!!$F2 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.887933 ACGACCATGAAACCAATGCC 59.112 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1428 0.716108 GCGAGTTCAAGATGACACCG 59.284 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.887933 ACGACCATGAAACCAATGCC 59.112 50.000 0.00 0.00 0.00 4.40
230 231 5.002464 ACTACACTGTTAAATCGGCGTAT 57.998 39.130 6.85 0.00 0.00 3.06
231 232 5.413499 ACTACACTGTTAAATCGGCGTATT 58.587 37.500 6.85 5.96 0.00 1.89
241 242 2.860628 CGGCGTATTGTGCTCTCGC 61.861 63.158 0.00 0.00 44.95 5.03
411 413 4.000988 GGATGAACAAACACTACGGACAT 58.999 43.478 0.00 0.00 0.00 3.06
501 504 2.401583 TCACCGTGCTCATGCTAATT 57.598 45.000 0.00 0.00 40.48 1.40
514 517 6.626623 GCTCATGCTAATTGTTTCTGGAATGT 60.627 38.462 0.00 0.00 36.03 2.71
679 682 1.549170 GTTAAAGCACGAGGAGGAGGA 59.451 52.381 0.00 0.00 0.00 3.71
762 765 3.244422 ACGGAAACATACACTGGTCATGT 60.244 43.478 0.00 0.00 34.42 3.21
789 792 1.059584 TGGCTGGAGACCACCTGAAA 61.060 55.000 0.00 0.00 30.29 2.69
814 817 5.163447 CGGGGTTAGTCAAGATCAATACAGA 60.163 44.000 0.00 0.00 0.00 3.41
815 818 6.463049 CGGGGTTAGTCAAGATCAATACAGAT 60.463 42.308 0.00 0.00 0.00 2.90
816 819 6.708054 GGGGTTAGTCAAGATCAATACAGATG 59.292 42.308 0.00 0.00 0.00 2.90
817 820 6.203723 GGGTTAGTCAAGATCAATACAGATGC 59.796 42.308 0.00 0.00 0.00 3.91
1151 1154 5.302360 TGTAATAAGGTCAGCAAACGTTCT 58.698 37.500 0.00 0.00 0.00 3.01
1218 1221 1.674057 CTGGCTCGAAGACAACCCT 59.326 57.895 0.00 0.00 29.23 4.34
1242 1245 5.013704 TGGTTTTCTCCTGACCAGCTTATTA 59.986 40.000 0.00 0.00 38.47 0.98
1243 1246 5.944007 GGTTTTCTCCTGACCAGCTTATTAA 59.056 40.000 0.00 0.00 33.61 1.40
1293 1296 5.994250 TGAATAAAGCTCTCTACATTGCCT 58.006 37.500 0.00 0.00 0.00 4.75
1324 1327 7.597288 AAAAGAGCCTTGTTAGGTGTAAAAT 57.403 32.000 0.00 0.00 44.00 1.82
1330 1333 5.151389 CCTTGTTAGGTGTAAAATCGTTGC 58.849 41.667 0.00 0.00 36.74 4.17
1348 1351 0.108138 GCCCTGCATACGTGAAGAGT 60.108 55.000 0.00 0.00 32.12 3.24
1350 1353 1.204704 CCCTGCATACGTGAAGAGTCA 59.795 52.381 0.00 0.00 32.12 3.41
1351 1354 2.534298 CCTGCATACGTGAAGAGTCAG 58.466 52.381 0.00 0.00 32.12 3.51
1352 1355 1.923204 CTGCATACGTGAAGAGTCAGC 59.077 52.381 0.00 0.00 32.12 4.26
1353 1356 1.546029 TGCATACGTGAAGAGTCAGCT 59.454 47.619 0.00 0.00 33.27 4.24
1354 1357 2.029020 TGCATACGTGAAGAGTCAGCTT 60.029 45.455 0.00 0.00 33.27 3.74
1355 1358 2.346847 GCATACGTGAAGAGTCAGCTTG 59.653 50.000 0.00 0.00 33.27 4.01
1360 1363 5.386958 ACGTGAAGAGTCAGCTTGTTATA 57.613 39.130 0.00 0.00 33.27 0.98
1371 1374 3.509575 CAGCTTGTTATAGGGGTGCAAAA 59.490 43.478 0.00 0.00 0.00 2.44
1460 1463 5.174398 TGAACTCGCAAAACTTTCGTACTAG 59.826 40.000 0.00 0.00 0.00 2.57
1570 2903 6.425721 ACATGTACGTGTGTAAATTAACTGCT 59.574 34.615 19.84 0.00 30.94 4.24
1697 3669 2.094906 ACGCAAATAGCAGACACGTCTA 60.095 45.455 0.00 0.00 46.13 2.59
1698 3670 2.279136 CGCAAATAGCAGACACGTCTAC 59.721 50.000 0.00 0.00 46.13 2.59
1722 3694 7.453393 ACACATAATGCTAGTATGGCTAACAT 58.547 34.615 0.00 0.00 46.01 2.71
1739 3712 7.996066 TGGCTAACATATAAATAAACAGGAGCA 59.004 33.333 0.00 0.00 0.00 4.26
1761 3735 7.013220 AGCAGGATAAATGAGTATACTCTCCA 58.987 38.462 28.53 13.64 43.25 3.86
1770 3744 4.106502 TGAGTATACTCTCCAGTAGGCCAT 59.893 45.833 28.53 0.00 43.25 4.40
1899 3881 5.086058 GGCATTGACAGTATTAAACACGTG 58.914 41.667 15.48 15.48 0.00 4.49
1911 3893 8.388103 AGTATTAAACACGTGCTGATATTTGAC 58.612 33.333 17.22 7.71 0.00 3.18
1937 3919 6.808704 CACATAAGCACGTACTAGATGCATAT 59.191 38.462 0.00 0.00 41.97 1.78
1976 3958 2.914695 AGTTAGTACGGCCAACACAA 57.085 45.000 2.24 0.00 0.00 3.33
1986 3969 3.572255 ACGGCCAACACAAAGATAAACAT 59.428 39.130 2.24 0.00 0.00 2.71
2020 4003 3.484407 TGAGTTATACCCTCTAGTCGGC 58.516 50.000 0.00 0.00 0.00 5.54
2076 4060 1.808945 GCTTCAGTGGACCTGTTGATG 59.191 52.381 0.00 0.00 42.19 3.07
2084 4068 1.275291 GGACCTGTTGATGACGAAGGA 59.725 52.381 0.00 0.00 0.00 3.36
2095 4079 2.248248 TGACGAAGGAGACAAGGACAT 58.752 47.619 0.00 0.00 0.00 3.06
2097 4081 3.444034 TGACGAAGGAGACAAGGACATAG 59.556 47.826 0.00 0.00 0.00 2.23
2099 4083 4.282496 ACGAAGGAGACAAGGACATAGAT 58.718 43.478 0.00 0.00 0.00 1.98
2110 4094 0.792640 GACATAGATGAATGGCGGCG 59.207 55.000 0.51 0.51 0.00 6.46
2111 4095 0.392706 ACATAGATGAATGGCGGCGA 59.607 50.000 12.98 0.00 0.00 5.54
2112 4096 1.073964 CATAGATGAATGGCGGCGAG 58.926 55.000 12.98 0.00 0.00 5.03
2113 4097 0.036952 ATAGATGAATGGCGGCGAGG 60.037 55.000 12.98 0.00 0.00 4.63
2114 4098 1.399744 TAGATGAATGGCGGCGAGGT 61.400 55.000 12.98 0.00 0.00 3.85
2115 4099 2.203070 ATGAATGGCGGCGAGGTC 60.203 61.111 12.98 1.82 0.00 3.85
2116 4100 2.923426 GATGAATGGCGGCGAGGTCA 62.923 60.000 12.98 8.34 0.00 4.02
2117 4101 2.435938 GAATGGCGGCGAGGTCAA 60.436 61.111 12.98 0.00 0.00 3.18
2118 4102 1.819632 GAATGGCGGCGAGGTCAAT 60.820 57.895 12.98 0.00 0.00 2.57
2119 4103 0.531974 GAATGGCGGCGAGGTCAATA 60.532 55.000 12.98 0.00 0.00 1.90
2120 4104 0.532862 AATGGCGGCGAGGTCAATAG 60.533 55.000 12.98 0.00 0.00 1.73
2121 4105 1.399744 ATGGCGGCGAGGTCAATAGA 61.400 55.000 12.98 0.00 0.00 1.98
2122 4106 1.300233 GGCGGCGAGGTCAATAGAG 60.300 63.158 12.98 0.00 0.00 2.43
2123 4107 1.437986 GCGGCGAGGTCAATAGAGT 59.562 57.895 12.98 0.00 0.00 3.24
2124 4108 0.872021 GCGGCGAGGTCAATAGAGTG 60.872 60.000 12.98 0.00 0.00 3.51
2125 4109 0.872021 CGGCGAGGTCAATAGAGTGC 60.872 60.000 0.00 0.00 0.00 4.40
2126 4110 0.461961 GGCGAGGTCAATAGAGTGCT 59.538 55.000 0.00 0.00 0.00 4.40
2127 4111 1.537135 GGCGAGGTCAATAGAGTGCTC 60.537 57.143 0.00 0.00 0.00 4.26
2128 4112 1.135139 GCGAGGTCAATAGAGTGCTCA 59.865 52.381 1.82 0.00 0.00 4.26
2129 4113 2.803451 CGAGGTCAATAGAGTGCTCAC 58.197 52.381 1.82 0.00 0.00 3.51
2130 4114 2.792890 CGAGGTCAATAGAGTGCTCACG 60.793 54.545 1.82 0.00 36.20 4.35
2131 4115 2.423892 GAGGTCAATAGAGTGCTCACGA 59.576 50.000 1.82 0.00 36.20 4.35
2132 4116 3.027412 AGGTCAATAGAGTGCTCACGAT 58.973 45.455 1.82 0.00 36.20 3.73
2133 4117 3.449018 AGGTCAATAGAGTGCTCACGATT 59.551 43.478 1.82 0.00 36.20 3.34
2134 4118 3.553511 GGTCAATAGAGTGCTCACGATTG 59.446 47.826 10.99 10.99 34.78 2.67
2135 4119 4.177026 GTCAATAGAGTGCTCACGATTGT 58.823 43.478 14.81 0.00 34.91 2.71
2136 4120 4.627467 GTCAATAGAGTGCTCACGATTGTT 59.373 41.667 14.81 3.26 34.91 2.83
2137 4121 4.864806 TCAATAGAGTGCTCACGATTGTTC 59.135 41.667 14.81 2.62 34.91 3.18
2138 4122 2.820059 AGAGTGCTCACGATTGTTCA 57.180 45.000 1.82 0.00 36.20 3.18
2139 4123 3.111853 AGAGTGCTCACGATTGTTCAA 57.888 42.857 1.82 0.00 36.20 2.69
2140 4124 3.062763 AGAGTGCTCACGATTGTTCAAG 58.937 45.455 1.82 0.00 36.20 3.02
2141 4125 2.146342 AGTGCTCACGATTGTTCAAGG 58.854 47.619 0.00 0.00 36.20 3.61
2142 4126 1.873591 GTGCTCACGATTGTTCAAGGT 59.126 47.619 0.00 0.00 0.00 3.50
2143 4127 2.096218 GTGCTCACGATTGTTCAAGGTC 60.096 50.000 0.00 0.00 0.00 3.85
2144 4128 1.464997 GCTCACGATTGTTCAAGGTCC 59.535 52.381 0.00 0.00 0.00 4.46
2145 4129 2.076863 CTCACGATTGTTCAAGGTCCC 58.923 52.381 0.00 0.00 0.00 4.46
2146 4130 1.697432 TCACGATTGTTCAAGGTCCCT 59.303 47.619 0.00 0.00 0.00 4.20
2147 4131 2.901192 TCACGATTGTTCAAGGTCCCTA 59.099 45.455 0.00 0.00 0.00 3.53
2148 4132 3.056107 TCACGATTGTTCAAGGTCCCTAG 60.056 47.826 0.00 0.00 0.00 3.02
2149 4133 2.904434 ACGATTGTTCAAGGTCCCTAGT 59.096 45.455 0.00 0.00 0.00 2.57
2150 4134 4.081862 CACGATTGTTCAAGGTCCCTAGTA 60.082 45.833 0.00 0.00 0.00 1.82
2151 4135 4.159879 ACGATTGTTCAAGGTCCCTAGTAG 59.840 45.833 0.00 0.00 0.00 2.57
2152 4136 3.975168 TTGTTCAAGGTCCCTAGTAGC 57.025 47.619 0.00 0.00 0.00 3.58
2153 4137 3.185880 TGTTCAAGGTCCCTAGTAGCT 57.814 47.619 0.00 0.00 0.00 3.32
2154 4138 2.832129 TGTTCAAGGTCCCTAGTAGCTG 59.168 50.000 0.00 0.00 0.00 4.24
2155 4139 2.160721 TCAAGGTCCCTAGTAGCTGG 57.839 55.000 0.00 0.00 0.00 4.85
2156 4140 1.361543 TCAAGGTCCCTAGTAGCTGGT 59.638 52.381 0.00 0.00 0.00 4.00
2157 4141 1.757699 CAAGGTCCCTAGTAGCTGGTC 59.242 57.143 0.00 0.00 0.00 4.02
2158 4142 1.008403 AGGTCCCTAGTAGCTGGTCA 58.992 55.000 0.00 0.00 0.00 4.02
2159 4143 1.576272 AGGTCCCTAGTAGCTGGTCAT 59.424 52.381 0.00 0.00 0.00 3.06
2160 4144 2.789992 AGGTCCCTAGTAGCTGGTCATA 59.210 50.000 0.00 0.00 0.00 2.15
2161 4145 3.158676 GGTCCCTAGTAGCTGGTCATAG 58.841 54.545 0.00 0.00 0.00 2.23
2162 4146 3.158676 GTCCCTAGTAGCTGGTCATAGG 58.841 54.545 0.00 9.27 34.08 2.57
2163 4147 1.896465 CCCTAGTAGCTGGTCATAGGC 59.104 57.143 0.00 0.00 33.14 3.93
2164 4148 1.896465 CCTAGTAGCTGGTCATAGGCC 59.104 57.143 0.00 0.00 0.00 5.19
2165 4149 2.491825 CCTAGTAGCTGGTCATAGGCCT 60.492 54.545 11.78 11.78 0.00 5.19
2166 4150 1.710816 AGTAGCTGGTCATAGGCCTC 58.289 55.000 9.68 0.00 0.00 4.70
2167 4151 1.062886 AGTAGCTGGTCATAGGCCTCA 60.063 52.381 9.68 0.00 0.00 3.86
2168 4152 1.762957 GTAGCTGGTCATAGGCCTCAA 59.237 52.381 9.68 0.00 0.00 3.02
2169 4153 1.289160 AGCTGGTCATAGGCCTCAAA 58.711 50.000 9.68 0.00 0.00 2.69
2170 4154 1.211457 AGCTGGTCATAGGCCTCAAAG 59.789 52.381 9.68 0.48 0.00 2.77
2171 4155 1.210478 GCTGGTCATAGGCCTCAAAGA 59.790 52.381 9.68 0.00 0.00 2.52
2172 4156 2.356125 GCTGGTCATAGGCCTCAAAGAA 60.356 50.000 9.68 0.00 0.00 2.52
2173 4157 3.686691 GCTGGTCATAGGCCTCAAAGAAT 60.687 47.826 9.68 0.00 0.00 2.40
2174 4158 3.881688 CTGGTCATAGGCCTCAAAGAATG 59.118 47.826 9.68 6.56 0.00 2.67
2175 4159 2.620585 GGTCATAGGCCTCAAAGAATGC 59.379 50.000 9.68 2.76 0.00 3.56
2176 4160 2.620585 GTCATAGGCCTCAAAGAATGCC 59.379 50.000 9.68 0.00 44.35 4.40
2179 4163 2.498077 GGCCTCAAAGAATGCCTCC 58.502 57.895 0.00 0.00 40.77 4.30
2180 4164 0.033699 GGCCTCAAAGAATGCCTCCT 60.034 55.000 0.00 0.00 40.77 3.69
2181 4165 1.387539 GCCTCAAAGAATGCCTCCTC 58.612 55.000 0.00 0.00 0.00 3.71
2182 4166 2.021208 GCCTCAAAGAATGCCTCCTCC 61.021 57.143 0.00 0.00 0.00 4.30
2183 4167 1.563410 CCTCAAAGAATGCCTCCTCCT 59.437 52.381 0.00 0.00 0.00 3.69
2184 4168 2.421248 CCTCAAAGAATGCCTCCTCCTC 60.421 54.545 0.00 0.00 0.00 3.71
2185 4169 2.238144 CTCAAAGAATGCCTCCTCCTCA 59.762 50.000 0.00 0.00 0.00 3.86
2186 4170 2.848694 TCAAAGAATGCCTCCTCCTCAT 59.151 45.455 0.00 0.00 0.00 2.90
2187 4171 3.118112 TCAAAGAATGCCTCCTCCTCATC 60.118 47.826 0.00 0.00 0.00 2.92
2188 4172 2.493099 AGAATGCCTCCTCCTCATCT 57.507 50.000 0.00 0.00 0.00 2.90
2189 4173 2.774173 AGAATGCCTCCTCCTCATCTT 58.226 47.619 0.00 0.00 0.00 2.40
2190 4174 2.438763 AGAATGCCTCCTCCTCATCTTG 59.561 50.000 0.00 0.00 0.00 3.02
2191 4175 0.473326 ATGCCTCCTCCTCATCTTGC 59.527 55.000 0.00 0.00 0.00 4.01
2192 4176 0.619832 TGCCTCCTCCTCATCTTGCT 60.620 55.000 0.00 0.00 0.00 3.91
2193 4177 0.179051 GCCTCCTCCTCATCTTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
2194 4178 0.179051 CCTCCTCCTCATCTTGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
2195 4179 0.831966 CTCCTCCTCATCTTGCTGCT 59.168 55.000 0.00 0.00 0.00 4.24
2196 4180 0.829333 TCCTCCTCATCTTGCTGCTC 59.171 55.000 0.00 0.00 0.00 4.26
2197 4181 0.540454 CCTCCTCATCTTGCTGCTCA 59.460 55.000 0.00 0.00 0.00 4.26
2198 4182 1.654317 CTCCTCATCTTGCTGCTCAC 58.346 55.000 0.00 0.00 0.00 3.51
2199 4183 1.207570 CTCCTCATCTTGCTGCTCACT 59.792 52.381 0.00 0.00 0.00 3.41
2200 4184 2.429971 CTCCTCATCTTGCTGCTCACTA 59.570 50.000 0.00 0.00 0.00 2.74
2201 4185 3.036819 TCCTCATCTTGCTGCTCACTAT 58.963 45.455 0.00 0.00 0.00 2.12
2202 4186 4.218312 TCCTCATCTTGCTGCTCACTATA 58.782 43.478 0.00 0.00 0.00 1.31
2203 4187 4.651045 TCCTCATCTTGCTGCTCACTATAA 59.349 41.667 0.00 0.00 0.00 0.98
2204 4188 5.306419 TCCTCATCTTGCTGCTCACTATAAT 59.694 40.000 0.00 0.00 0.00 1.28
2205 4189 5.996513 CCTCATCTTGCTGCTCACTATAATT 59.003 40.000 0.00 0.00 0.00 1.40
2206 4190 6.073167 CCTCATCTTGCTGCTCACTATAATTG 60.073 42.308 0.00 0.00 0.00 2.32
2207 4191 6.585416 TCATCTTGCTGCTCACTATAATTGA 58.415 36.000 0.00 0.00 0.00 2.57
2208 4192 7.222161 TCATCTTGCTGCTCACTATAATTGAT 58.778 34.615 0.00 0.00 0.00 2.57
2209 4193 6.856135 TCTTGCTGCTCACTATAATTGATG 57.144 37.500 0.00 0.00 0.00 3.07
2210 4194 5.237996 TCTTGCTGCTCACTATAATTGATGC 59.762 40.000 0.00 0.00 0.00 3.91
2211 4195 3.817084 TGCTGCTCACTATAATTGATGCC 59.183 43.478 0.00 0.00 0.00 4.40
2212 4196 3.817084 GCTGCTCACTATAATTGATGCCA 59.183 43.478 0.00 0.00 0.00 4.92
2213 4197 4.458295 GCTGCTCACTATAATTGATGCCAT 59.542 41.667 0.00 0.00 0.00 4.40
2214 4198 5.048224 GCTGCTCACTATAATTGATGCCATT 60.048 40.000 0.00 0.00 0.00 3.16
2215 4199 6.321848 TGCTCACTATAATTGATGCCATTG 57.678 37.500 0.00 0.00 0.00 2.82
2216 4200 5.242171 TGCTCACTATAATTGATGCCATTGG 59.758 40.000 0.00 0.00 0.00 3.16
2226 4210 2.356278 GCCATTGGCCTGGACAGA 59.644 61.111 17.28 0.00 44.06 3.41
2227 4211 1.751927 GCCATTGGCCTGGACAGAG 60.752 63.158 17.28 0.00 44.06 3.35
2228 4212 1.993653 CCATTGGCCTGGACAGAGA 59.006 57.895 0.76 0.00 38.69 3.10
2229 4213 0.107312 CCATTGGCCTGGACAGAGAG 60.107 60.000 0.76 0.00 38.69 3.20
2230 4214 0.617413 CATTGGCCTGGACAGAGAGT 59.383 55.000 0.76 0.00 0.00 3.24
2231 4215 1.833630 CATTGGCCTGGACAGAGAGTA 59.166 52.381 0.76 0.00 0.00 2.59
2232 4216 2.254152 TTGGCCTGGACAGAGAGTAT 57.746 50.000 0.76 0.00 0.00 2.12
2233 4217 1.489481 TGGCCTGGACAGAGAGTATG 58.511 55.000 3.32 0.00 0.00 2.39
2234 4218 1.007118 TGGCCTGGACAGAGAGTATGA 59.993 52.381 3.32 0.00 0.00 2.15
2235 4219 2.324541 GGCCTGGACAGAGAGTATGAT 58.675 52.381 0.00 0.00 0.00 2.45
2236 4220 2.703007 GGCCTGGACAGAGAGTATGATT 59.297 50.000 0.00 0.00 0.00 2.57
2237 4221 3.135530 GGCCTGGACAGAGAGTATGATTT 59.864 47.826 0.00 0.00 0.00 2.17
2238 4222 4.384647 GGCCTGGACAGAGAGTATGATTTT 60.385 45.833 0.00 0.00 0.00 1.82
2239 4223 5.163301 GGCCTGGACAGAGAGTATGATTTTA 60.163 44.000 0.00 0.00 0.00 1.52
2240 4224 6.465035 GGCCTGGACAGAGAGTATGATTTTAT 60.465 42.308 0.00 0.00 0.00 1.40
2241 4225 6.995091 GCCTGGACAGAGAGTATGATTTTATT 59.005 38.462 0.00 0.00 0.00 1.40
2242 4226 7.500559 GCCTGGACAGAGAGTATGATTTTATTT 59.499 37.037 0.00 0.00 0.00 1.40
2243 4227 9.401058 CCTGGACAGAGAGTATGATTTTATTTT 57.599 33.333 0.00 0.00 0.00 1.82
2245 4229 9.739276 TGGACAGAGAGTATGATTTTATTTTGT 57.261 29.630 0.00 0.00 0.00 2.83
2246 4230 9.994432 GGACAGAGAGTATGATTTTATTTTGTG 57.006 33.333 0.00 0.00 0.00 3.33
2255 4239 9.906660 GTATGATTTTATTTTGTGTGTCTTCCA 57.093 29.630 0.00 0.00 0.00 3.53
2258 4242 9.258826 TGATTTTATTTTGTGTGTCTTCCATTG 57.741 29.630 0.00 0.00 0.00 2.82
2259 4243 9.474920 GATTTTATTTTGTGTGTCTTCCATTGA 57.525 29.630 0.00 0.00 0.00 2.57
2260 4244 8.870160 TTTTATTTTGTGTGTCTTCCATTGAG 57.130 30.769 0.00 0.00 0.00 3.02
2261 4245 3.988379 TTTGTGTGTCTTCCATTGAGC 57.012 42.857 0.00 0.00 0.00 4.26
2262 4246 2.636647 TGTGTGTCTTCCATTGAGCA 57.363 45.000 0.00 0.00 0.00 4.26
2263 4247 2.221169 TGTGTGTCTTCCATTGAGCAC 58.779 47.619 0.00 0.00 0.00 4.40
2264 4248 2.221169 GTGTGTCTTCCATTGAGCACA 58.779 47.619 0.00 0.00 0.00 4.57
2265 4249 2.618241 GTGTGTCTTCCATTGAGCACAA 59.382 45.455 0.00 0.00 40.42 3.33
2266 4250 2.880268 TGTGTCTTCCATTGAGCACAAG 59.120 45.455 2.37 0.00 39.46 3.16
2267 4251 1.881973 TGTCTTCCATTGAGCACAAGC 59.118 47.619 2.37 0.00 39.46 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.869344 TCAATCACTGTATTTTCTGGTCTCG 59.131 40.000 0.00 0.00 0.00 4.04
86 87 4.225942 TCTCTTACCAACTGCTGATTCCAT 59.774 41.667 0.00 0.00 0.00 3.41
87 88 3.582647 TCTCTTACCAACTGCTGATTCCA 59.417 43.478 0.00 0.00 0.00 3.53
195 196 5.078411 ACAGTGTAGTTGCCTATCTTCTG 57.922 43.478 0.00 0.00 0.00 3.02
241 242 5.121454 AGAGCTAAGCACTCTTTTTGATTCG 59.879 40.000 0.00 0.00 41.79 3.34
411 413 3.475575 TGCTCAAATCGCTAATATGCCA 58.524 40.909 0.00 0.00 0.00 4.92
486 489 4.093514 CAGAAACAATTAGCATGAGCACG 58.906 43.478 0.00 0.00 45.49 5.34
501 504 2.224018 GCAAAGCCACATTCCAGAAACA 60.224 45.455 0.00 0.00 0.00 2.83
514 517 0.179124 GTCAAACCAACGCAAAGCCA 60.179 50.000 0.00 0.00 0.00 4.75
679 682 2.930826 ACAAGTTGTTGGATCCGACT 57.069 45.000 28.73 16.51 38.07 4.18
762 765 2.038813 TCTCCAGCCATGACCCGA 59.961 61.111 0.00 0.00 0.00 5.14
789 792 4.468510 TGTATTGATCTTGACTAACCCCGT 59.531 41.667 0.00 0.00 0.00 5.28
816 819 5.008911 TGTGTCAATAGATATTGCACCATGC 59.991 40.000 22.71 0.00 42.79 4.06
817 820 6.622833 TGTGTCAATAGATATTGCACCATG 57.377 37.500 22.71 0.00 42.79 3.66
1218 1221 1.140312 AGCTGGTCAGGAGAAAACCA 58.860 50.000 0.00 0.00 40.70 3.67
1242 1245 2.359900 GCATTCTCCCGACAATCAGTT 58.640 47.619 0.00 0.00 0.00 3.16
1243 1246 1.407437 GGCATTCTCCCGACAATCAGT 60.407 52.381 0.00 0.00 0.00 3.41
1304 1307 4.694037 ACGATTTTACACCTAACAAGGCTC 59.306 41.667 0.00 0.00 0.00 4.70
1305 1308 4.648651 ACGATTTTACACCTAACAAGGCT 58.351 39.130 0.00 0.00 0.00 4.58
1306 1309 5.151389 CAACGATTTTACACCTAACAAGGC 58.849 41.667 0.00 0.00 0.00 4.35
1310 1313 3.502979 GGGCAACGATTTTACACCTAACA 59.497 43.478 0.00 0.00 37.60 2.41
1311 1314 3.754850 AGGGCAACGATTTTACACCTAAC 59.245 43.478 0.00 0.00 37.60 2.34
1312 1315 3.754323 CAGGGCAACGATTTTACACCTAA 59.246 43.478 0.00 0.00 37.60 2.69
1313 1316 3.340034 CAGGGCAACGATTTTACACCTA 58.660 45.455 0.00 0.00 37.60 3.08
1314 1317 2.159382 CAGGGCAACGATTTTACACCT 58.841 47.619 0.00 0.00 37.60 4.00
1315 1318 1.402325 GCAGGGCAACGATTTTACACC 60.402 52.381 0.00 0.00 37.60 4.16
1316 1319 1.268352 TGCAGGGCAACGATTTTACAC 59.732 47.619 0.00 0.00 34.76 2.90
1317 1320 1.610363 TGCAGGGCAACGATTTTACA 58.390 45.000 0.00 0.00 34.76 2.41
1318 1321 2.939460 ATGCAGGGCAACGATTTTAC 57.061 45.000 0.00 0.00 43.62 2.01
1324 1327 1.739929 CACGTATGCAGGGCAACGA 60.740 57.895 22.62 1.28 43.62 3.85
1330 1333 1.204704 TGACTCTTCACGTATGCAGGG 59.795 52.381 0.00 0.00 0.00 4.45
1348 1351 1.912731 TGCACCCCTATAACAAGCTGA 59.087 47.619 0.00 0.00 0.00 4.26
1350 1353 3.449746 TTTGCACCCCTATAACAAGCT 57.550 42.857 0.00 0.00 0.00 3.74
1351 1354 4.529109 TTTTTGCACCCCTATAACAAGC 57.471 40.909 0.00 0.00 0.00 4.01
1375 1378 4.681744 CCAACATATTGTAGCGGCAAATT 58.318 39.130 1.45 0.00 33.60 1.82
1376 1379 3.490761 GCCAACATATTGTAGCGGCAAAT 60.491 43.478 1.45 1.81 39.03 2.32
1377 1380 2.159310 GCCAACATATTGTAGCGGCAAA 60.159 45.455 1.45 0.00 39.03 3.68
1392 1395 6.061441 AGGATCGAATGTAAATATGCCAACA 58.939 36.000 0.00 0.00 0.00 3.33
1408 1411 3.006110 ACACCGAGTAAACAAGGATCGAA 59.994 43.478 0.00 0.00 35.47 3.71
1425 1428 0.716108 GCGAGTTCAAGATGACACCG 59.284 55.000 0.00 0.00 0.00 4.94
1671 3643 3.239941 CGTGTCTGCTATTTGCGTAGTAC 59.760 47.826 0.00 0.00 46.63 2.73
1683 3655 5.578776 CATTATGTGTAGACGTGTCTGCTA 58.421 41.667 17.08 8.36 41.90 3.49
1697 3669 6.826668 TGTTAGCCATACTAGCATTATGTGT 58.173 36.000 0.00 0.00 37.19 3.72
1739 3712 9.747898 CTACTGGAGAGTATACTCATTTATCCT 57.252 37.037 29.85 16.38 45.21 3.24
1761 3735 1.225704 GGCTTCTGCATGGCCTACT 59.774 57.895 3.32 0.00 42.31 2.57
1860 3842 6.183360 TGTCAATGCCATGCTCATGATTATTT 60.183 34.615 11.17 0.00 41.20 1.40
1863 3845 4.208746 TGTCAATGCCATGCTCATGATTA 58.791 39.130 11.17 0.00 41.20 1.75
1899 3881 5.514279 GTGCTTATGTGGTCAAATATCAGC 58.486 41.667 0.00 0.00 0.00 4.26
1911 3893 3.736252 GCATCTAGTACGTGCTTATGTGG 59.264 47.826 12.53 0.00 36.02 4.17
1959 3941 3.472283 TCTTTGTGTTGGCCGTACTAA 57.528 42.857 0.00 0.00 0.00 2.24
1964 3946 2.952978 TGTTTATCTTTGTGTTGGCCGT 59.047 40.909 0.00 0.00 0.00 5.68
1976 3958 6.601613 TCATTTAACCCGCTCATGTTTATCTT 59.398 34.615 0.00 0.00 0.00 2.40
1986 3969 5.362263 GGTATAACTCATTTAACCCGCTCA 58.638 41.667 0.00 0.00 0.00 4.26
2046 4030 1.902508 TCCACTGAAGCCGAGAAGAAT 59.097 47.619 0.00 0.00 0.00 2.40
2076 4060 3.695060 TCTATGTCCTTGTCTCCTTCGTC 59.305 47.826 0.00 0.00 0.00 4.20
2084 4068 4.712476 GCCATTCATCTATGTCCTTGTCT 58.288 43.478 0.00 0.00 0.00 3.41
2095 4079 1.367471 CCTCGCCGCCATTCATCTA 59.633 57.895 0.00 0.00 0.00 1.98
2097 4081 2.203070 ACCTCGCCGCCATTCATC 60.203 61.111 0.00 0.00 0.00 2.92
2099 4083 2.535485 ATTGACCTCGCCGCCATTCA 62.535 55.000 0.00 0.00 0.00 2.57
2110 4094 2.423892 TCGTGAGCACTCTATTGACCTC 59.576 50.000 0.00 0.00 0.00 3.85
2111 4095 2.447443 TCGTGAGCACTCTATTGACCT 58.553 47.619 0.00 0.00 0.00 3.85
2112 4096 2.941453 TCGTGAGCACTCTATTGACC 57.059 50.000 0.00 0.00 0.00 4.02
2113 4097 4.177026 ACAATCGTGAGCACTCTATTGAC 58.823 43.478 18.94 2.85 33.43 3.18
2114 4098 4.456280 ACAATCGTGAGCACTCTATTGA 57.544 40.909 18.94 6.24 33.43 2.57
2115 4099 4.627035 TGAACAATCGTGAGCACTCTATTG 59.373 41.667 14.14 14.14 34.36 1.90
2116 4100 4.820897 TGAACAATCGTGAGCACTCTATT 58.179 39.130 0.00 0.00 0.00 1.73
2117 4101 4.456280 TGAACAATCGTGAGCACTCTAT 57.544 40.909 0.00 0.00 0.00 1.98
2118 4102 3.934457 TGAACAATCGTGAGCACTCTA 57.066 42.857 0.00 0.00 0.00 2.43
2119 4103 2.820059 TGAACAATCGTGAGCACTCT 57.180 45.000 0.00 0.00 0.00 3.24
2120 4104 2.158449 CCTTGAACAATCGTGAGCACTC 59.842 50.000 0.00 0.00 0.00 3.51
2121 4105 2.146342 CCTTGAACAATCGTGAGCACT 58.854 47.619 0.00 0.00 0.00 4.40
2122 4106 1.873591 ACCTTGAACAATCGTGAGCAC 59.126 47.619 0.00 0.00 0.00 4.40
2123 4107 2.143122 GACCTTGAACAATCGTGAGCA 58.857 47.619 0.00 0.00 0.00 4.26
2124 4108 1.464997 GGACCTTGAACAATCGTGAGC 59.535 52.381 0.00 0.00 0.00 4.26
2125 4109 2.076863 GGGACCTTGAACAATCGTGAG 58.923 52.381 0.00 0.00 0.00 3.51
2126 4110 1.697432 AGGGACCTTGAACAATCGTGA 59.303 47.619 0.00 0.00 0.00 4.35
2127 4111 2.185004 AGGGACCTTGAACAATCGTG 57.815 50.000 0.00 0.00 0.00 4.35
2128 4112 2.904434 ACTAGGGACCTTGAACAATCGT 59.096 45.455 6.81 0.00 0.00 3.73
2129 4113 3.611766 ACTAGGGACCTTGAACAATCG 57.388 47.619 6.81 0.00 0.00 3.34
2130 4114 4.162509 AGCTACTAGGGACCTTGAACAATC 59.837 45.833 6.81 0.00 0.00 2.67
2131 4115 4.080863 CAGCTACTAGGGACCTTGAACAAT 60.081 45.833 6.81 0.00 0.00 2.71
2132 4116 3.260884 CAGCTACTAGGGACCTTGAACAA 59.739 47.826 6.81 0.00 0.00 2.83
2133 4117 2.832129 CAGCTACTAGGGACCTTGAACA 59.168 50.000 6.81 0.00 0.00 3.18
2134 4118 2.168728 CCAGCTACTAGGGACCTTGAAC 59.831 54.545 6.81 0.00 0.00 3.18
2135 4119 2.225547 ACCAGCTACTAGGGACCTTGAA 60.226 50.000 6.81 0.00 0.00 2.69
2136 4120 1.361543 ACCAGCTACTAGGGACCTTGA 59.638 52.381 6.81 0.00 0.00 3.02
2137 4121 1.757699 GACCAGCTACTAGGGACCTTG 59.242 57.143 0.00 0.00 0.00 3.61
2138 4122 1.361543 TGACCAGCTACTAGGGACCTT 59.638 52.381 0.00 0.00 0.00 3.50
2139 4123 1.008403 TGACCAGCTACTAGGGACCT 58.992 55.000 0.00 0.00 0.00 3.85
2140 4124 2.089600 ATGACCAGCTACTAGGGACC 57.910 55.000 0.00 0.00 0.00 4.46
2141 4125 3.158676 CCTATGACCAGCTACTAGGGAC 58.841 54.545 0.00 0.00 0.00 4.46
2142 4126 2.491086 GCCTATGACCAGCTACTAGGGA 60.491 54.545 0.00 0.00 31.50 4.20
2143 4127 1.896465 GCCTATGACCAGCTACTAGGG 59.104 57.143 0.00 0.00 31.50 3.53
2144 4128 1.896465 GGCCTATGACCAGCTACTAGG 59.104 57.143 0.00 0.00 33.54 3.02
2145 4129 2.823154 GAGGCCTATGACCAGCTACTAG 59.177 54.545 4.42 0.00 0.00 2.57
2146 4130 2.177016 TGAGGCCTATGACCAGCTACTA 59.823 50.000 4.42 0.00 0.00 1.82
2147 4131 1.062886 TGAGGCCTATGACCAGCTACT 60.063 52.381 4.42 0.00 0.00 2.57
2148 4132 1.414158 TGAGGCCTATGACCAGCTAC 58.586 55.000 4.42 0.00 0.00 3.58
2149 4133 2.174685 TTGAGGCCTATGACCAGCTA 57.825 50.000 4.42 0.00 0.00 3.32
2150 4134 1.211457 CTTTGAGGCCTATGACCAGCT 59.789 52.381 4.42 0.00 0.00 4.24
2151 4135 1.210478 TCTTTGAGGCCTATGACCAGC 59.790 52.381 4.42 0.00 0.00 4.85
2152 4136 3.634397 TTCTTTGAGGCCTATGACCAG 57.366 47.619 4.42 0.00 0.00 4.00
2153 4137 3.889815 CATTCTTTGAGGCCTATGACCA 58.110 45.455 4.42 0.00 0.00 4.02
2154 4138 2.620585 GCATTCTTTGAGGCCTATGACC 59.379 50.000 4.42 0.00 0.00 4.02
2155 4139 2.620585 GGCATTCTTTGAGGCCTATGAC 59.379 50.000 4.42 2.30 43.09 3.06
2156 4140 2.936202 GGCATTCTTTGAGGCCTATGA 58.064 47.619 4.42 0.00 43.09 2.15
2161 4145 0.033699 AGGAGGCATTCTTTGAGGCC 60.034 55.000 0.00 0.00 46.77 5.19
2162 4146 1.387539 GAGGAGGCATTCTTTGAGGC 58.612 55.000 0.00 0.00 0.00 4.70
2163 4147 1.563410 AGGAGGAGGCATTCTTTGAGG 59.437 52.381 0.00 0.00 0.00 3.86
2164 4148 2.238144 TGAGGAGGAGGCATTCTTTGAG 59.762 50.000 0.00 0.00 0.00 3.02
2165 4149 2.269023 TGAGGAGGAGGCATTCTTTGA 58.731 47.619 0.00 0.00 0.00 2.69
2166 4150 2.795231 TGAGGAGGAGGCATTCTTTG 57.205 50.000 0.00 0.00 0.00 2.77
2167 4151 3.121688 AGATGAGGAGGAGGCATTCTTT 58.878 45.455 0.00 0.00 0.00 2.52
2168 4152 2.774173 AGATGAGGAGGAGGCATTCTT 58.226 47.619 0.00 0.00 0.00 2.52
2169 4153 2.438763 CAAGATGAGGAGGAGGCATTCT 59.561 50.000 0.00 0.00 0.00 2.40
2170 4154 2.848691 CAAGATGAGGAGGAGGCATTC 58.151 52.381 0.00 0.00 0.00 2.67
2171 4155 1.133853 GCAAGATGAGGAGGAGGCATT 60.134 52.381 0.00 0.00 0.00 3.56
2172 4156 0.473326 GCAAGATGAGGAGGAGGCAT 59.527 55.000 0.00 0.00 0.00 4.40
2173 4157 0.619832 AGCAAGATGAGGAGGAGGCA 60.620 55.000 0.00 0.00 0.00 4.75
2174 4158 0.179051 CAGCAAGATGAGGAGGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
2175 4159 0.179051 GCAGCAAGATGAGGAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
2176 4160 0.831966 AGCAGCAAGATGAGGAGGAG 59.168 55.000 0.00 0.00 0.00 3.69
2177 4161 0.829333 GAGCAGCAAGATGAGGAGGA 59.171 55.000 0.00 0.00 0.00 3.71
2178 4162 0.540454 TGAGCAGCAAGATGAGGAGG 59.460 55.000 0.00 0.00 0.00 4.30
2179 4163 1.207570 AGTGAGCAGCAAGATGAGGAG 59.792 52.381 0.00 0.00 0.00 3.69
2180 4164 1.273759 AGTGAGCAGCAAGATGAGGA 58.726 50.000 0.00 0.00 0.00 3.71
2181 4165 2.975732 TAGTGAGCAGCAAGATGAGG 57.024 50.000 0.00 0.00 0.00 3.86
2182 4166 6.704937 TCAATTATAGTGAGCAGCAAGATGAG 59.295 38.462 0.00 0.00 0.00 2.90
2183 4167 6.585416 TCAATTATAGTGAGCAGCAAGATGA 58.415 36.000 0.00 0.00 0.00 2.92
2184 4168 6.856135 TCAATTATAGTGAGCAGCAAGATG 57.144 37.500 0.00 0.00 0.00 2.90
2185 4169 6.072618 GCATCAATTATAGTGAGCAGCAAGAT 60.073 38.462 0.00 0.00 0.00 2.40
2186 4170 5.237996 GCATCAATTATAGTGAGCAGCAAGA 59.762 40.000 0.00 0.00 0.00 3.02
2187 4171 5.450171 GCATCAATTATAGTGAGCAGCAAG 58.550 41.667 0.00 0.00 0.00 4.01
2188 4172 4.276678 GGCATCAATTATAGTGAGCAGCAA 59.723 41.667 0.00 0.00 0.00 3.91
2189 4173 3.817084 GGCATCAATTATAGTGAGCAGCA 59.183 43.478 0.00 0.00 0.00 4.41
2190 4174 3.817084 TGGCATCAATTATAGTGAGCAGC 59.183 43.478 0.00 0.00 0.00 5.25
2191 4175 6.379386 CAATGGCATCAATTATAGTGAGCAG 58.621 40.000 0.00 0.00 0.00 4.24
2192 4176 5.242171 CCAATGGCATCAATTATAGTGAGCA 59.758 40.000 0.00 0.00 0.00 4.26
2193 4177 5.706916 CCAATGGCATCAATTATAGTGAGC 58.293 41.667 0.00 0.00 0.00 4.26
2210 4194 0.107312 CTCTCTGTCCAGGCCAATGG 60.107 60.000 5.01 4.76 42.11 3.16
2211 4195 0.617413 ACTCTCTGTCCAGGCCAATG 59.383 55.000 5.01 0.00 0.00 2.82
2212 4196 2.254152 TACTCTCTGTCCAGGCCAAT 57.746 50.000 5.01 0.00 0.00 3.16
2213 4197 1.833630 CATACTCTCTGTCCAGGCCAA 59.166 52.381 5.01 0.00 0.00 4.52
2214 4198 1.007118 TCATACTCTCTGTCCAGGCCA 59.993 52.381 5.01 0.00 0.00 5.36
2215 4199 1.781786 TCATACTCTCTGTCCAGGCC 58.218 55.000 0.00 0.00 0.00 5.19
2216 4200 4.414337 AAATCATACTCTCTGTCCAGGC 57.586 45.455 0.00 0.00 0.00 4.85
2217 4201 8.970859 AAATAAAATCATACTCTCTGTCCAGG 57.029 34.615 0.00 0.00 0.00 4.45
2219 4203 9.739276 ACAAAATAAAATCATACTCTCTGTCCA 57.261 29.630 0.00 0.00 0.00 4.02
2220 4204 9.994432 CACAAAATAAAATCATACTCTCTGTCC 57.006 33.333 0.00 0.00 0.00 4.02
2229 4213 9.906660 TGGAAGACACACAAAATAAAATCATAC 57.093 29.630 0.00 0.00 0.00 2.39
2232 4216 9.258826 CAATGGAAGACACACAAAATAAAATCA 57.741 29.630 0.00 0.00 0.00 2.57
2233 4217 9.474920 TCAATGGAAGACACACAAAATAAAATC 57.525 29.630 0.00 0.00 0.00 2.17
2234 4218 9.480053 CTCAATGGAAGACACACAAAATAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
2235 4219 7.437862 GCTCAATGGAAGACACACAAAATAAAA 59.562 33.333 0.00 0.00 0.00 1.52
2236 4220 6.922957 GCTCAATGGAAGACACACAAAATAAA 59.077 34.615 0.00 0.00 0.00 1.40
2237 4221 6.040278 TGCTCAATGGAAGACACACAAAATAA 59.960 34.615 0.00 0.00 0.00 1.40
2238 4222 5.534278 TGCTCAATGGAAGACACACAAAATA 59.466 36.000 0.00 0.00 0.00 1.40
2239 4223 4.341806 TGCTCAATGGAAGACACACAAAAT 59.658 37.500 0.00 0.00 0.00 1.82
2240 4224 3.698539 TGCTCAATGGAAGACACACAAAA 59.301 39.130 0.00 0.00 0.00 2.44
2241 4225 3.066621 GTGCTCAATGGAAGACACACAAA 59.933 43.478 0.00 0.00 0.00 2.83
2242 4226 2.618241 GTGCTCAATGGAAGACACACAA 59.382 45.455 0.00 0.00 0.00 3.33
2243 4227 2.221169 GTGCTCAATGGAAGACACACA 58.779 47.619 0.00 0.00 0.00 3.72
2244 4228 2.221169 TGTGCTCAATGGAAGACACAC 58.779 47.619 0.00 0.00 33.41 3.82
2245 4229 2.636647 TGTGCTCAATGGAAGACACA 57.363 45.000 0.00 0.00 35.80 3.72
2246 4230 2.351157 GCTTGTGCTCAATGGAAGACAC 60.351 50.000 0.99 0.00 36.03 3.67
2247 4231 1.881973 GCTTGTGCTCAATGGAAGACA 59.118 47.619 0.99 0.00 36.03 3.41
2248 4232 2.626088 GCTTGTGCTCAATGGAAGAC 57.374 50.000 0.99 0.00 36.03 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.