Multiple sequence alignment - TraesCS6D01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G148100 chr6D 100.000 2702 0 0 1 2702 121171812 121169111 0.000000e+00 4990.0
1 TraesCS6D01G148100 chr6D 100.000 2298 0 0 2967 5264 121168846 121166549 0.000000e+00 4244.0
2 TraesCS6D01G148100 chr6D 98.598 214 3 0 5051 5264 121161559 121161346 3.850000e-101 379.0
3 TraesCS6D01G148100 chr6D 83.544 79 10 3 418 495 82941897 82941973 2.630000e-08 71.3
4 TraesCS6D01G148100 chr6D 92.683 41 3 0 4407 4447 56277730 56277770 5.690000e-05 60.2
5 TraesCS6D01G148100 chr6B 97.274 2091 34 10 2967 5050 213238362 213236288 0.000000e+00 3524.0
6 TraesCS6D01G148100 chr6B 97.121 1806 31 5 903 2702 213240564 213238774 0.000000e+00 3027.0
7 TraesCS6D01G148100 chr6B 84.211 456 27 9 301 742 213241129 213240705 8.210000e-108 401.0
8 TraesCS6D01G148100 chr6B 79.911 224 40 5 3942 4162 706113844 706114065 5.460000e-35 159.0
9 TraesCS6D01G148100 chr6B 96.154 52 0 2 1778 1829 225872631 225872680 3.380000e-12 84.2
10 TraesCS6D01G148100 chr1D 98.598 214 3 0 5051 5264 47721618 47721831 3.850000e-101 379.0
11 TraesCS6D01G148100 chr1D 98.131 214 3 1 5051 5264 47716496 47716708 6.440000e-99 372.0
12 TraesCS6D01G148100 chr1D 97.196 214 6 0 5051 5264 33318414 33318201 3.870000e-96 363.0
13 TraesCS6D01G148100 chr1D 96.729 214 7 0 5051 5264 33064825 33064612 1.800000e-94 357.0
14 TraesCS6D01G148100 chr1D 96.729 214 7 0 5051 5264 33313347 33313134 1.800000e-94 357.0
15 TraesCS6D01G148100 chr1D 94.340 53 3 0 1785 1837 404066315 404066367 1.210000e-11 82.4
16 TraesCS6D01G148100 chr3D 97.664 214 5 0 5051 5264 56444201 56443988 8.330000e-98 368.0
17 TraesCS6D01G148100 chr3D 96.729 214 7 0 5051 5264 56439266 56439053 1.800000e-94 357.0
18 TraesCS6D01G148100 chr5D 95.133 226 7 4 5039 5262 406110829 406111052 2.330000e-93 353.0
19 TraesCS6D01G148100 chr5D 96.078 51 2 0 1781 1831 491004595 491004645 3.380000e-12 84.2
20 TraesCS6D01G148100 chr5D 92.857 56 3 1 1778 1832 173749850 173749795 4.370000e-11 80.5
21 TraesCS6D01G148100 chr4D 81.659 229 30 12 3956 4176 87725957 87725733 4.190000e-41 180.0
22 TraesCS6D01G148100 chr5A 79.032 248 43 8 3962 4204 522059447 522059204 1.520000e-35 161.0
23 TraesCS6D01G148100 chr5A 94.118 85 5 0 1 85 554875586 554875502 4.280000e-26 130.0
24 TraesCS6D01G148100 chr5A 82.418 91 11 1 4405 4490 457945655 457945565 2.030000e-09 75.0
25 TraesCS6D01G148100 chr1B 78.968 252 36 15 3962 4204 377191061 377191304 7.060000e-34 156.0
26 TraesCS6D01G148100 chr3A 79.808 208 38 4 3982 4188 741619288 741619084 1.180000e-31 148.0
27 TraesCS6D01G148100 chr3A 92.958 71 5 0 1 71 701924536 701924606 2.590000e-18 104.0
28 TraesCS6D01G148100 chr3A 82.222 90 8 4 4404 4487 87363869 87363956 2.630000e-08 71.3
29 TraesCS6D01G148100 chr7D 80.296 203 33 6 3942 4141 18257280 18257478 4.250000e-31 147.0
30 TraesCS6D01G148100 chr7D 86.842 76 5 2 4419 4489 625355911 625355836 4.370000e-11 80.5
31 TraesCS6D01G148100 chr2D 79.167 216 35 10 3935 4143 579585793 579586005 1.980000e-29 141.0
32 TraesCS6D01G148100 chr2D 86.598 97 7 3 4405 4495 61023706 61023802 9.330000e-18 102.0
33 TraesCS6D01G148100 chr2A 78.899 218 34 12 3949 4161 221202896 221203106 2.560000e-28 137.0
34 TraesCS6D01G148100 chr2A 85.714 84 12 0 2 85 605041115 605041032 7.260000e-14 89.8
35 TraesCS6D01G148100 chr2A 94.231 52 3 0 2 53 719341372 719341423 4.370000e-11 80.5
36 TraesCS6D01G148100 chr2A 97.436 39 1 0 15 53 719340496 719340534 3.400000e-07 67.6
37 TraesCS6D01G148100 chr2A 94.286 35 1 1 4413 4447 3718924 3718891 1.000000e-02 52.8
38 TraesCS6D01G148100 chr6A 79.227 207 33 9 3945 4145 410909890 410910092 9.200000e-28 135.0
39 TraesCS6D01G148100 chr6A 97.959 49 1 0 1788 1836 614534042 614533994 9.390000e-13 86.1
40 TraesCS6D01G148100 chr6A 97.143 35 1 0 50 84 5440580 5440546 5.690000e-05 60.2
41 TraesCS6D01G148100 chr1A 77.928 222 35 13 3949 4162 137923994 137924209 5.530000e-25 126.0
42 TraesCS6D01G148100 chr1A 77.027 222 37 13 3949 4162 115566912 115566697 1.200000e-21 115.0
43 TraesCS6D01G148100 chr1A 83.784 74 3 3 4420 4488 60355387 60355456 1.580000e-05 62.1
44 TraesCS6D01G148100 chr5B 97.917 48 1 0 1782 1829 35382365 35382412 3.380000e-12 84.2
45 TraesCS6D01G148100 chr4A 97.917 48 1 0 1785 1832 311662733 311662686 3.380000e-12 84.2
46 TraesCS6D01G148100 chr4A 84.507 71 11 0 20 90 84372258 84372188 2.630000e-08 71.3
47 TraesCS6D01G148100 chr4B 95.833 48 2 0 1781 1828 667977367 667977414 1.570000e-10 78.7
48 TraesCS6D01G148100 chr7B 100.000 30 0 0 4420 4449 554189197 554189226 7.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G148100 chr6D 121166549 121171812 5263 True 4617.000000 4990 100.000000 1 5264 2 chr6D.!!$R2 5263
1 TraesCS6D01G148100 chr6B 213236288 213241129 4841 True 2317.333333 3524 92.868667 301 5050 3 chr6B.!!$R1 4749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.035458 GGATGGCTGGGTTCCTATCG 59.965 60.000 0.00 0.0 0.0 2.92 F
837 882 0.036010 CTTGCACTCCCAATCGACCT 60.036 55.000 0.00 0.0 0.0 3.85 F
838 883 0.400213 TTGCACTCCCAATCGACCTT 59.600 50.000 0.00 0.0 0.0 3.50 F
840 885 1.066430 TGCACTCCCAATCGACCTTAC 60.066 52.381 0.00 0.0 0.0 2.34 F
2225 2273 1.289530 TCTCTTTTTGGGGTTGTGGGT 59.710 47.619 0.00 0.0 0.0 4.51 F
2304 2352 1.754803 TGGTACCTCTTATGACGCCAG 59.245 52.381 14.36 0.0 0.0 4.85 F
3223 3421 0.108898 CTGCAGTGAAGGGAGACTCG 60.109 60.000 5.25 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1028 1073 0.179189 GATGTTCCTTTGCTTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46 R
2224 2272 2.143876 ATTAGCAACACATCCCCCAC 57.856 50.000 0.00 0.00 0.00 4.61 R
2304 2352 2.352651 TGATTGTCGCAAGCTTCTATGC 59.647 45.455 0.00 0.00 39.17 3.14 R
2410 2458 7.179694 ACAAATCCTTGAAGATGAACATCCATT 59.820 33.333 10.63 0.95 36.13 3.16 R
3220 3418 0.821711 TCCCAACTTTGTTGCCCGAG 60.822 55.000 5.04 0.00 0.00 4.63 R
3355 3553 0.969149 AGAGTCGATGGCACTGACAA 59.031 50.000 19.39 0.00 35.09 3.18 R
5219 5424 0.030399 GGTAGGGATGTAGGTGGGGT 60.030 60.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.971261 GGTGAAAACGAACGAGATTTGC 59.029 45.455 0.14 0.00 0.00 3.68
22 23 3.547214 GGTGAAAACGAACGAGATTTGCA 60.547 43.478 0.14 0.00 0.00 4.08
23 24 4.032355 GTGAAAACGAACGAGATTTGCAA 58.968 39.130 0.00 0.00 0.00 4.08
24 25 4.497608 GTGAAAACGAACGAGATTTGCAAA 59.502 37.500 15.44 15.44 0.00 3.68
25 26 4.732923 TGAAAACGAACGAGATTTGCAAAG 59.267 37.500 18.19 6.32 0.00 2.77
26 27 2.969443 ACGAACGAGATTTGCAAAGG 57.031 45.000 18.19 9.07 0.00 3.11
27 28 1.535462 ACGAACGAGATTTGCAAAGGG 59.465 47.619 18.19 8.73 0.00 3.95
28 29 1.535462 CGAACGAGATTTGCAAAGGGT 59.465 47.619 18.19 9.34 0.00 4.34
29 30 2.665519 CGAACGAGATTTGCAAAGGGTG 60.666 50.000 18.19 9.94 0.00 4.61
30 31 1.247567 ACGAGATTTGCAAAGGGTGG 58.752 50.000 18.19 8.12 0.00 4.61
31 32 1.202879 ACGAGATTTGCAAAGGGTGGA 60.203 47.619 18.19 0.00 0.00 4.02
32 33 1.200020 CGAGATTTGCAAAGGGTGGAC 59.800 52.381 18.19 4.08 0.00 4.02
33 34 1.200020 GAGATTTGCAAAGGGTGGACG 59.800 52.381 18.19 0.00 0.00 4.79
34 35 0.388520 GATTTGCAAAGGGTGGACGC 60.389 55.000 18.19 0.00 0.00 5.19
35 36 2.141122 ATTTGCAAAGGGTGGACGCG 62.141 55.000 18.19 3.53 0.00 6.01
36 37 4.555709 TGCAAAGGGTGGACGCGT 62.556 61.111 13.85 13.85 0.00 6.01
37 38 4.025401 GCAAAGGGTGGACGCGTG 62.025 66.667 20.70 0.00 0.00 5.34
38 39 3.353836 CAAAGGGTGGACGCGTGG 61.354 66.667 20.70 0.00 0.00 4.94
39 40 3.552384 AAAGGGTGGACGCGTGGA 61.552 61.111 20.70 0.00 0.00 4.02
40 41 2.890766 AAAGGGTGGACGCGTGGAT 61.891 57.895 20.70 0.00 0.00 3.41
41 42 3.605749 AAGGGTGGACGCGTGGATG 62.606 63.158 20.70 0.00 0.00 3.51
47 48 4.451150 GACGCGTGGATGGCCTGA 62.451 66.667 20.70 0.00 34.31 3.86
48 49 4.457496 ACGCGTGGATGGCCTGAG 62.457 66.667 12.93 0.00 34.31 3.35
50 51 3.785859 GCGTGGATGGCCTGAGGA 61.786 66.667 0.65 0.00 34.31 3.71
51 52 3.112205 GCGTGGATGGCCTGAGGAT 62.112 63.158 0.65 0.00 34.31 3.24
52 53 1.227764 CGTGGATGGCCTGAGGATG 60.228 63.158 0.65 0.00 34.31 3.51
53 54 1.150081 GTGGATGGCCTGAGGATGG 59.850 63.158 0.65 0.00 34.31 3.51
59 60 3.415087 GCCTGAGGATGGCTGGGT 61.415 66.667 0.65 0.00 46.38 4.51
60 61 2.988839 GCCTGAGGATGGCTGGGTT 61.989 63.158 0.65 0.00 46.38 4.11
61 62 1.225704 CCTGAGGATGGCTGGGTTC 59.774 63.158 0.00 0.00 0.00 3.62
62 63 1.225704 CTGAGGATGGCTGGGTTCC 59.774 63.158 0.00 0.00 0.00 3.62
63 64 1.229951 TGAGGATGGCTGGGTTCCT 60.230 57.895 0.00 0.00 42.58 3.36
64 65 0.044092 TGAGGATGGCTGGGTTCCTA 59.956 55.000 0.00 0.00 39.98 2.94
65 66 1.345422 TGAGGATGGCTGGGTTCCTAT 60.345 52.381 0.00 0.00 39.98 2.57
66 67 1.349357 GAGGATGGCTGGGTTCCTATC 59.651 57.143 0.00 0.00 39.98 2.08
67 68 0.035458 GGATGGCTGGGTTCCTATCG 59.965 60.000 0.00 0.00 0.00 2.92
68 69 0.759346 GATGGCTGGGTTCCTATCGT 59.241 55.000 0.00 0.00 0.00 3.73
69 70 0.759346 ATGGCTGGGTTCCTATCGTC 59.241 55.000 0.00 0.00 0.00 4.20
70 71 0.616395 TGGCTGGGTTCCTATCGTCA 60.616 55.000 0.00 0.00 0.00 4.35
71 72 0.759346 GGCTGGGTTCCTATCGTCAT 59.241 55.000 0.00 0.00 0.00 3.06
72 73 1.141053 GGCTGGGTTCCTATCGTCATT 59.859 52.381 0.00 0.00 0.00 2.57
73 74 2.421529 GGCTGGGTTCCTATCGTCATTT 60.422 50.000 0.00 0.00 0.00 2.32
74 75 3.181458 GGCTGGGTTCCTATCGTCATTTA 60.181 47.826 0.00 0.00 0.00 1.40
75 76 4.505039 GGCTGGGTTCCTATCGTCATTTAT 60.505 45.833 0.00 0.00 0.00 1.40
76 77 5.279809 GGCTGGGTTCCTATCGTCATTTATA 60.280 44.000 0.00 0.00 0.00 0.98
77 78 6.407202 GCTGGGTTCCTATCGTCATTTATAT 58.593 40.000 0.00 0.00 0.00 0.86
78 79 6.313905 GCTGGGTTCCTATCGTCATTTATATG 59.686 42.308 0.00 0.00 0.00 1.78
79 80 7.311092 TGGGTTCCTATCGTCATTTATATGT 57.689 36.000 0.00 0.00 33.34 2.29
80 81 7.741785 TGGGTTCCTATCGTCATTTATATGTT 58.258 34.615 0.00 0.00 33.34 2.71
81 82 8.872134 TGGGTTCCTATCGTCATTTATATGTTA 58.128 33.333 0.00 0.00 33.34 2.41
82 83 9.715121 GGGTTCCTATCGTCATTTATATGTTAA 57.285 33.333 0.00 0.00 33.34 2.01
109 110 9.715121 ATTAAAGATATTTATTGGCCTTGCATG 57.285 29.630 3.32 0.00 0.00 4.06
110 111 6.982160 AAGATATTTATTGGCCTTGCATGA 57.018 33.333 3.32 0.00 0.00 3.07
111 112 7.549147 AAGATATTTATTGGCCTTGCATGAT 57.451 32.000 3.32 0.00 0.00 2.45
112 113 7.549147 AGATATTTATTGGCCTTGCATGATT 57.451 32.000 3.32 0.00 0.00 2.57
113 114 7.609056 AGATATTTATTGGCCTTGCATGATTC 58.391 34.615 3.32 0.00 0.00 2.52
114 115 5.881923 ATTTATTGGCCTTGCATGATTCT 57.118 34.783 3.32 0.00 0.00 2.40
115 116 6.982160 ATTTATTGGCCTTGCATGATTCTA 57.018 33.333 3.32 0.00 0.00 2.10
116 117 6.788598 TTTATTGGCCTTGCATGATTCTAA 57.211 33.333 3.32 0.00 0.00 2.10
117 118 6.788598 TTATTGGCCTTGCATGATTCTAAA 57.211 33.333 3.32 0.00 0.00 1.85
118 119 5.680594 ATTGGCCTTGCATGATTCTAAAA 57.319 34.783 3.32 0.00 0.00 1.52
119 120 5.480642 TTGGCCTTGCATGATTCTAAAAA 57.519 34.783 3.32 0.00 0.00 1.94
142 143 7.458409 AAAGCTAGCATGATATTTACATGGG 57.542 36.000 18.83 0.00 43.39 4.00
143 144 6.131972 AGCTAGCATGATATTTACATGGGT 57.868 37.500 18.83 0.00 43.39 4.51
144 145 6.546484 AGCTAGCATGATATTTACATGGGTT 58.454 36.000 18.83 0.00 43.39 4.11
145 146 6.432162 AGCTAGCATGATATTTACATGGGTTG 59.568 38.462 18.83 0.00 43.39 3.77
146 147 6.207417 GCTAGCATGATATTTACATGGGTTGT 59.793 38.462 10.63 0.00 43.39 3.32
147 148 6.639632 AGCATGATATTTACATGGGTTGTC 57.360 37.500 0.00 0.00 43.39 3.18
148 149 5.239306 AGCATGATATTTACATGGGTTGTCG 59.761 40.000 0.00 0.00 43.39 4.35
149 150 5.562696 GCATGATATTTACATGGGTTGTCGG 60.563 44.000 0.00 0.00 43.39 4.79
150 151 5.105567 TGATATTTACATGGGTTGTCGGT 57.894 39.130 0.00 0.00 39.87 4.69
151 152 5.502079 TGATATTTACATGGGTTGTCGGTT 58.498 37.500 0.00 0.00 39.87 4.44
152 153 5.946972 TGATATTTACATGGGTTGTCGGTTT 59.053 36.000 0.00 0.00 39.87 3.27
153 154 6.434652 TGATATTTACATGGGTTGTCGGTTTT 59.565 34.615 0.00 0.00 39.87 2.43
154 155 5.538849 ATTTACATGGGTTGTCGGTTTTT 57.461 34.783 0.00 0.00 39.87 1.94
178 179 9.601971 TTTTATGTCTTTGCAACGTTAGATTAC 57.398 29.630 0.00 0.00 0.00 1.89
179 180 8.542497 TTATGTCTTTGCAACGTTAGATTACT 57.458 30.769 0.00 0.00 0.00 2.24
180 181 9.642327 TTATGTCTTTGCAACGTTAGATTACTA 57.358 29.630 0.00 0.00 0.00 1.82
181 182 7.576750 TGTCTTTGCAACGTTAGATTACTAG 57.423 36.000 0.00 0.00 0.00 2.57
182 183 7.149973 TGTCTTTGCAACGTTAGATTACTAGT 58.850 34.615 0.00 0.00 0.00 2.57
183 184 8.298854 TGTCTTTGCAACGTTAGATTACTAGTA 58.701 33.333 0.00 0.00 0.00 1.82
184 185 8.582096 GTCTTTGCAACGTTAGATTACTAGTAC 58.418 37.037 0.00 0.00 0.00 2.73
185 186 8.298854 TCTTTGCAACGTTAGATTACTAGTACA 58.701 33.333 0.00 0.00 0.00 2.90
186 187 7.801547 TTGCAACGTTAGATTACTAGTACAC 57.198 36.000 0.00 0.00 0.00 2.90
187 188 7.149569 TGCAACGTTAGATTACTAGTACACT 57.850 36.000 0.00 7.57 0.00 3.55
188 189 7.025365 TGCAACGTTAGATTACTAGTACACTG 58.975 38.462 0.00 0.00 0.00 3.66
189 190 7.025963 GCAACGTTAGATTACTAGTACACTGT 58.974 38.462 0.00 0.00 0.00 3.55
190 191 7.217825 GCAACGTTAGATTACTAGTACACTGTC 59.782 40.741 0.00 0.00 0.00 3.51
191 192 7.912056 ACGTTAGATTACTAGTACACTGTCA 57.088 36.000 0.91 0.00 0.00 3.58
192 193 8.327941 ACGTTAGATTACTAGTACACTGTCAA 57.672 34.615 0.91 0.00 0.00 3.18
193 194 8.786898 ACGTTAGATTACTAGTACACTGTCAAA 58.213 33.333 0.91 0.00 0.00 2.69
194 195 9.275231 CGTTAGATTACTAGTACACTGTCAAAG 57.725 37.037 0.91 0.00 0.00 2.77
195 196 9.570488 GTTAGATTACTAGTACACTGTCAAAGG 57.430 37.037 0.91 0.00 0.00 3.11
196 197 6.631962 AGATTACTAGTACACTGTCAAAGGC 58.368 40.000 0.91 0.00 0.00 4.35
197 198 5.794726 TTACTAGTACACTGTCAAAGGCA 57.205 39.130 0.91 0.00 0.00 4.75
198 199 4.891992 ACTAGTACACTGTCAAAGGCAT 57.108 40.909 0.00 0.00 0.00 4.40
199 200 5.228945 ACTAGTACACTGTCAAAGGCATT 57.771 39.130 0.00 0.00 0.00 3.56
200 201 4.997395 ACTAGTACACTGTCAAAGGCATTG 59.003 41.667 0.00 0.00 40.58 2.82
201 202 4.085357 AGTACACTGTCAAAGGCATTGA 57.915 40.909 0.22 0.22 45.71 2.57
210 211 4.226427 TCAAAGGCATTGAGTAGATGCT 57.774 40.909 0.22 0.00 46.92 3.79
211 212 4.592942 TCAAAGGCATTGAGTAGATGCTT 58.407 39.130 0.22 0.00 46.92 3.91
214 215 4.978083 AGGCATTGAGTAGATGCTTTTG 57.022 40.909 8.73 0.00 46.92 2.44
215 216 3.129988 AGGCATTGAGTAGATGCTTTTGC 59.870 43.478 8.73 0.00 46.92 3.68
232 233 6.929896 GCTTTTGCATCATGCTTACTATTTG 58.070 36.000 11.84 0.00 45.31 2.32
233 234 6.532657 GCTTTTGCATCATGCTTACTATTTGT 59.467 34.615 11.84 0.00 45.31 2.83
234 235 7.063780 GCTTTTGCATCATGCTTACTATTTGTT 59.936 33.333 11.84 0.00 45.31 2.83
235 236 7.815398 TTTGCATCATGCTTACTATTTGTTG 57.185 32.000 11.84 0.00 45.31 3.33
236 237 6.756299 TGCATCATGCTTACTATTTGTTGA 57.244 33.333 11.84 0.00 45.31 3.18
237 238 6.788243 TGCATCATGCTTACTATTTGTTGAG 58.212 36.000 11.84 0.00 45.31 3.02
238 239 6.375174 TGCATCATGCTTACTATTTGTTGAGT 59.625 34.615 11.84 0.00 45.31 3.41
239 240 7.094248 TGCATCATGCTTACTATTTGTTGAGTT 60.094 33.333 11.84 0.00 45.31 3.01
240 241 8.397906 GCATCATGCTTACTATTTGTTGAGTTA 58.602 33.333 1.02 0.00 40.96 2.24
243 244 9.665719 TCATGCTTACTATTTGTTGAGTTATGA 57.334 29.630 0.00 0.00 0.00 2.15
284 285 9.871238 TTGACCTTTATTATAGAGTGTTGTCTC 57.129 33.333 0.00 0.00 34.96 3.36
285 286 9.031537 TGACCTTTATTATAGAGTGTTGTCTCA 57.968 33.333 0.00 0.00 36.97 3.27
286 287 9.303537 GACCTTTATTATAGAGTGTTGTCTCAC 57.696 37.037 0.00 0.00 36.97 3.51
287 288 8.258708 ACCTTTATTATAGAGTGTTGTCTCACC 58.741 37.037 0.00 0.00 38.91 4.02
288 289 7.435488 CCTTTATTATAGAGTGTTGTCTCACCG 59.565 40.741 0.00 0.00 38.91 4.94
289 290 7.634671 TTATTATAGAGTGTTGTCTCACCGA 57.365 36.000 0.00 0.00 38.91 4.69
290 291 5.562506 TTATAGAGTGTTGTCTCACCGAG 57.437 43.478 0.00 0.00 38.91 4.63
291 292 1.982660 AGAGTGTTGTCTCACCGAGA 58.017 50.000 0.00 0.00 38.91 4.04
292 293 1.883275 AGAGTGTTGTCTCACCGAGAG 59.117 52.381 0.00 0.00 46.14 3.20
293 294 0.315568 AGTGTTGTCTCACCGAGAGC 59.684 55.000 0.00 0.00 44.35 4.09
294 295 0.667792 GTGTTGTCTCACCGAGAGCC 60.668 60.000 0.00 0.00 44.35 4.70
295 296 1.112916 TGTTGTCTCACCGAGAGCCA 61.113 55.000 0.00 0.00 44.35 4.75
296 297 0.667792 GTTGTCTCACCGAGAGCCAC 60.668 60.000 0.00 0.00 44.35 5.01
297 298 1.816863 TTGTCTCACCGAGAGCCACC 61.817 60.000 0.00 0.00 44.35 4.61
298 299 2.117423 TCTCACCGAGAGCCACCA 59.883 61.111 0.55 0.00 44.35 4.17
299 300 1.979155 TCTCACCGAGAGCCACCAG 60.979 63.158 0.55 0.00 44.35 4.00
331 332 5.126707 GGAGAAAGAGCCATGATTTTGATGT 59.873 40.000 0.00 0.00 0.00 3.06
352 353 2.659016 CAAGGCCTGACTGAGCGA 59.341 61.111 5.69 0.00 0.00 4.93
390 391 3.323751 AGGCCAAGATTTTGATGCAAC 57.676 42.857 5.01 0.00 36.36 4.17
391 392 2.027837 AGGCCAAGATTTTGATGCAACC 60.028 45.455 5.01 0.00 36.36 3.77
392 393 2.349590 GCCAAGATTTTGATGCAACCC 58.650 47.619 0.00 0.00 36.36 4.11
393 394 2.289569 GCCAAGATTTTGATGCAACCCA 60.290 45.455 0.00 0.00 36.36 4.51
394 395 3.620472 GCCAAGATTTTGATGCAACCCAT 60.620 43.478 0.00 0.00 36.36 4.00
404 405 4.110036 GATGCAACCCATCTAACCAAAC 57.890 45.455 0.00 0.00 45.58 2.93
405 406 2.950781 TGCAACCCATCTAACCAAACA 58.049 42.857 0.00 0.00 0.00 2.83
406 407 3.505386 TGCAACCCATCTAACCAAACAT 58.495 40.909 0.00 0.00 0.00 2.71
407 408 3.257873 TGCAACCCATCTAACCAAACATG 59.742 43.478 0.00 0.00 0.00 3.21
408 409 3.258123 GCAACCCATCTAACCAAACATGT 59.742 43.478 0.00 0.00 0.00 3.21
409 410 4.618227 GCAACCCATCTAACCAAACATGTC 60.618 45.833 0.00 0.00 0.00 3.06
410 411 3.343617 ACCCATCTAACCAAACATGTCG 58.656 45.455 0.00 0.00 0.00 4.35
411 412 3.008594 ACCCATCTAACCAAACATGTCGA 59.991 43.478 0.00 0.00 0.00 4.20
412 413 4.006989 CCCATCTAACCAAACATGTCGAA 58.993 43.478 0.00 0.00 0.00 3.71
413 414 4.457603 CCCATCTAACCAAACATGTCGAAA 59.542 41.667 0.00 0.00 0.00 3.46
414 415 5.125417 CCCATCTAACCAAACATGTCGAAAT 59.875 40.000 0.00 0.00 0.00 2.17
415 416 6.350110 CCCATCTAACCAAACATGTCGAAATT 60.350 38.462 0.00 0.00 0.00 1.82
416 417 7.148154 CCCATCTAACCAAACATGTCGAAATTA 60.148 37.037 0.00 0.00 0.00 1.40
417 418 7.696453 CCATCTAACCAAACATGTCGAAATTAC 59.304 37.037 0.00 0.00 0.00 1.89
418 419 7.731882 TCTAACCAAACATGTCGAAATTACA 57.268 32.000 0.00 0.00 0.00 2.41
419 420 8.330466 TCTAACCAAACATGTCGAAATTACAT 57.670 30.769 0.00 0.00 38.08 2.29
420 421 8.447833 TCTAACCAAACATGTCGAAATTACATC 58.552 33.333 0.00 0.00 35.39 3.06
431 432 8.624367 TGTCGAAATTACATCTTTTTAAGGGA 57.376 30.769 0.00 0.00 0.00 4.20
463 464 9.232082 CGATTCTTTATTCAAACAAGTTCAACA 57.768 29.630 0.00 0.00 0.00 3.33
499 500 2.894765 TCATGTAGTCGAAGGAACCACA 59.105 45.455 0.00 0.00 0.00 4.17
500 501 2.806608 TGTAGTCGAAGGAACCACAC 57.193 50.000 0.00 0.00 0.00 3.82
501 502 2.033372 TGTAGTCGAAGGAACCACACA 58.967 47.619 0.00 0.00 0.00 3.72
502 503 2.631062 TGTAGTCGAAGGAACCACACAT 59.369 45.455 0.00 0.00 0.00 3.21
514 515 1.623811 ACCACACATGTCTACCTCCAC 59.376 52.381 0.00 0.00 0.00 4.02
518 519 3.513912 CACACATGTCTACCTCCACCTAA 59.486 47.826 0.00 0.00 0.00 2.69
531 532 9.907229 CTACCTCCACCTAAAGATAAAGAAAAT 57.093 33.333 0.00 0.00 0.00 1.82
565 566 8.526978 TGCTACTATCAGCCTCATAATTTCTAG 58.473 37.037 0.00 0.00 41.04 2.43
571 572 5.899547 TCAGCCTCATAATTTCTAGACCTCA 59.100 40.000 0.00 0.00 0.00 3.86
680 682 4.319249 GGCAAAACAAGCCGTGTC 57.681 55.556 0.00 0.00 43.15 3.67
681 683 1.733526 GGCAAAACAAGCCGTGTCT 59.266 52.632 0.00 0.00 43.15 3.41
682 684 0.948678 GGCAAAACAAGCCGTGTCTA 59.051 50.000 0.00 0.00 43.15 2.59
766 810 0.179124 GTCTAGCCAGCTCTGTTCGG 60.179 60.000 0.00 0.00 0.00 4.30
782 826 1.229336 CGGGAGGCTGGATAGGGAT 60.229 63.158 0.00 0.00 0.00 3.85
811 856 2.107204 ACAATCATGCCATAGGTCTCCC 59.893 50.000 0.00 0.00 0.00 4.30
837 882 0.036010 CTTGCACTCCCAATCGACCT 60.036 55.000 0.00 0.00 0.00 3.85
838 883 0.400213 TTGCACTCCCAATCGACCTT 59.600 50.000 0.00 0.00 0.00 3.50
840 885 1.066430 TGCACTCCCAATCGACCTTAC 60.066 52.381 0.00 0.00 0.00 2.34
844 889 4.682320 GCACTCCCAATCGACCTTACATAA 60.682 45.833 0.00 0.00 0.00 1.90
846 891 5.878116 CACTCCCAATCGACCTTACATAAAA 59.122 40.000 0.00 0.00 0.00 1.52
848 893 6.057321 TCCCAATCGACCTTACATAAAAGT 57.943 37.500 0.00 0.00 0.00 2.66
850 895 5.065988 CCCAATCGACCTTACATAAAAGTGG 59.934 44.000 0.00 0.00 0.00 4.00
852 897 6.037172 CCAATCGACCTTACATAAAAGTGGAG 59.963 42.308 0.00 0.00 0.00 3.86
853 898 5.080969 TCGACCTTACATAAAAGTGGAGG 57.919 43.478 0.00 0.00 34.57 4.30
854 899 4.773674 TCGACCTTACATAAAAGTGGAGGA 59.226 41.667 0.00 0.00 33.41 3.71
855 900 5.424252 TCGACCTTACATAAAAGTGGAGGAT 59.576 40.000 0.00 0.00 33.41 3.24
856 901 6.070424 TCGACCTTACATAAAAGTGGAGGATT 60.070 38.462 0.00 0.00 33.41 3.01
857 902 6.258068 CGACCTTACATAAAAGTGGAGGATTC 59.742 42.308 0.00 0.00 33.41 2.52
964 1009 1.556911 TGCCCAGACTCTTCCTTCATC 59.443 52.381 0.00 0.00 0.00 2.92
1144 1189 5.440610 CAGGTGCAAACCTTATCTCCTTAT 58.559 41.667 0.00 0.00 38.22 1.73
1330 1375 2.511600 GCGTCGCCAGCATTACCT 60.512 61.111 5.75 0.00 34.19 3.08
1388 1433 6.532826 TCTGCTTGTGTATGCCATATCAATA 58.467 36.000 6.00 0.87 0.00 1.90
1498 1543 8.854614 ATTCTAGAAACAGCAGACTTACATTT 57.145 30.769 9.71 0.00 0.00 2.32
1499 1544 9.944376 ATTCTAGAAACAGCAGACTTACATTTA 57.056 29.630 9.71 0.00 0.00 1.40
1500 1545 9.772973 TTCTAGAAACAGCAGACTTACATTTAA 57.227 29.630 1.68 0.00 0.00 1.52
1501 1546 9.424319 TCTAGAAACAGCAGACTTACATTTAAG 57.576 33.333 0.00 0.00 40.68 1.85
1503 1548 8.451908 AGAAACAGCAGACTTACATTTAAGTT 57.548 30.769 5.77 0.00 46.67 2.66
1504 1549 8.903820 AGAAACAGCAGACTTACATTTAAGTTT 58.096 29.630 5.77 0.00 46.67 2.66
1505 1550 8.856490 AAACAGCAGACTTACATTTAAGTTTG 57.144 30.769 14.80 14.80 46.67 2.93
1506 1551 6.970484 ACAGCAGACTTACATTTAAGTTTGG 58.030 36.000 18.67 9.38 46.67 3.28
1507 1552 5.858581 CAGCAGACTTACATTTAAGTTTGGC 59.141 40.000 18.67 15.15 46.67 4.52
1508 1553 5.048013 AGCAGACTTACATTTAAGTTTGGCC 60.048 40.000 18.67 0.00 46.67 5.36
1509 1554 5.048013 GCAGACTTACATTTAAGTTTGGCCT 60.048 40.000 18.67 4.85 46.67 5.19
1510 1555 6.516693 GCAGACTTACATTTAAGTTTGGCCTT 60.517 38.462 18.67 0.00 46.67 4.35
1800 1848 6.071278 GCTTCTTTCTTCTACTCCCTCTGTAA 60.071 42.308 0.00 0.00 0.00 2.41
1814 1862 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
1944 1992 4.938575 TTTATGAGAGCCCCTGGTTTAA 57.061 40.909 0.00 0.00 0.00 1.52
2159 2207 5.180117 GTGCAACTGTATCTGAACACATTCT 59.820 40.000 0.00 0.00 35.69 2.40
2221 2269 2.024369 ACAGGTCTCTTTTTGGGGTTGT 60.024 45.455 0.00 0.00 0.00 3.32
2224 2272 1.686587 GTCTCTTTTTGGGGTTGTGGG 59.313 52.381 0.00 0.00 0.00 4.61
2225 2273 1.289530 TCTCTTTTTGGGGTTGTGGGT 59.710 47.619 0.00 0.00 0.00 4.51
2246 2294 2.830923 TGGGGGATGTGTTGCTAATTTG 59.169 45.455 0.00 0.00 0.00 2.32
2257 2305 8.049655 TGTGTTGCTAATTTGTATGATGCTTA 57.950 30.769 0.00 0.00 0.00 3.09
2304 2352 1.754803 TGGTACCTCTTATGACGCCAG 59.245 52.381 14.36 0.00 0.00 4.85
2410 2458 5.391950 GGAAATTAGCGAGAACAGAAATGCA 60.392 40.000 0.00 0.00 0.00 3.96
3053 3251 4.400567 GGTAAGTGATAACAGGAGTACGGT 59.599 45.833 0.00 0.00 0.00 4.83
3152 3350 2.676471 ATGGAGCGGTTTGGTGGC 60.676 61.111 0.00 0.00 0.00 5.01
3220 3418 0.390998 GCTCTGCAGTGAAGGGAGAC 60.391 60.000 19.61 0.00 0.00 3.36
3223 3421 0.108898 CTGCAGTGAAGGGAGACTCG 60.109 60.000 5.25 0.00 0.00 4.18
3289 3487 7.693969 AAAACAATCAAACACAATTTTGGGA 57.306 28.000 0.00 0.00 37.13 4.37
3355 3553 2.430694 TCGAGTTGCATGCTATAGTGGT 59.569 45.455 20.33 0.00 0.00 4.16
3419 3617 2.069273 GACATCAGGGTTGAACGTGAG 58.931 52.381 5.44 1.69 38.47 3.51
3420 3618 1.270839 ACATCAGGGTTGAACGTGAGG 60.271 52.381 8.74 8.74 41.24 3.86
3421 3619 1.001974 CATCAGGGTTGAACGTGAGGA 59.998 52.381 5.38 0.00 38.78 3.71
3422 3620 0.391597 TCAGGGTTGAACGTGAGGAC 59.608 55.000 0.00 0.00 32.17 3.85
3423 3621 0.393077 CAGGGTTGAACGTGAGGACT 59.607 55.000 0.00 0.00 0.00 3.85
3424 3622 0.680061 AGGGTTGAACGTGAGGACTC 59.320 55.000 0.00 0.00 0.00 3.36
3425 3623 0.666577 GGGTTGAACGTGAGGACTCG 60.667 60.000 0.00 0.00 38.66 4.18
3426 3624 0.666577 GGTTGAACGTGAGGACTCGG 60.667 60.000 0.00 0.00 37.34 4.63
3427 3625 0.031721 GTTGAACGTGAGGACTCGGT 59.968 55.000 0.00 0.00 37.34 4.69
3428 3626 0.313043 TTGAACGTGAGGACTCGGTC 59.687 55.000 0.00 0.00 45.80 4.79
3452 3650 5.527214 CAGAATTTGAGTGTGTGGTAGACAA 59.473 40.000 0.00 0.00 35.91 3.18
3487 3685 4.404715 AGGCAATCTTTTCCATCTCCATTG 59.595 41.667 0.00 0.00 0.00 2.82
3520 3718 4.507512 GGATTAAGGATTAAGAGCAGGGGG 60.508 50.000 0.00 0.00 44.82 5.40
3613 3811 2.730550 CCAAAGTCCATTCTGGCAAC 57.269 50.000 0.00 0.00 37.47 4.17
3614 3812 2.242043 CCAAAGTCCATTCTGGCAACT 58.758 47.619 0.00 0.00 37.47 3.16
3697 3895 3.052455 TCCAAGTGCGATGTGTTGTAT 57.948 42.857 0.00 0.00 0.00 2.29
3756 3954 4.142469 GCTACAAACTGGGTGCGAAATAAT 60.142 41.667 0.00 0.00 0.00 1.28
3757 3955 5.065474 GCTACAAACTGGGTGCGAAATAATA 59.935 40.000 0.00 0.00 0.00 0.98
3758 3956 5.305139 ACAAACTGGGTGCGAAATAATAC 57.695 39.130 0.00 0.00 0.00 1.89
3796 3994 6.534634 AGATGGTATAGGCAATTTAGACACC 58.465 40.000 0.00 0.00 0.00 4.16
3838 4036 4.084223 CGTTGTTTTTGTACCAGCTACGAT 60.084 41.667 0.00 0.00 0.00 3.73
4153 4352 3.051606 CTTGGTCAAAGTGTGTGAACG 57.948 47.619 0.00 0.00 35.34 3.95
4167 4366 4.142988 TGTGTGAACGTTGACTTTTGAGAC 60.143 41.667 18.62 7.30 0.00 3.36
4275 4474 3.993081 TCCAGCAATAAACAAAAATGGCG 59.007 39.130 0.00 0.00 0.00 5.69
4318 4517 7.150447 TCCATGATCTAGACTGTACTCCTTA 57.850 40.000 0.00 0.00 0.00 2.69
4490 4694 1.486211 ATGGAACGGAGGGAGTAGTG 58.514 55.000 0.00 0.00 0.00 2.74
4604 4808 3.070476 TGCTCAAATGTGTGGCTATGA 57.930 42.857 5.51 0.00 0.00 2.15
4605 4809 3.623703 TGCTCAAATGTGTGGCTATGAT 58.376 40.909 5.51 0.00 0.00 2.45
4611 4815 6.182627 TCAAATGTGTGGCTATGATTTCTCT 58.817 36.000 0.00 0.00 0.00 3.10
4790 4995 9.767684 TTTTTGTGTTAATCTACATAATGCTCG 57.232 29.630 0.00 0.00 30.74 5.03
4867 5072 2.125310 TTGTGGAGCGGGTATGCG 60.125 61.111 0.00 0.00 40.67 4.73
4886 5091 4.241681 TGCGTTGCCTTCATTATTTTTCC 58.758 39.130 0.00 0.00 0.00 3.13
4941 5146 4.676546 CTTATTGCCTTTCTAAAGCTGGC 58.323 43.478 2.12 2.12 43.49 4.85
5060 5265 9.952030 TTAATGTGTTGATACTTGTTAGGATGA 57.048 29.630 0.00 0.00 0.00 2.92
5062 5267 8.668510 ATGTGTTGATACTTGTTAGGATGATC 57.331 34.615 0.00 0.00 0.00 2.92
5063 5268 7.851228 TGTGTTGATACTTGTTAGGATGATCT 58.149 34.615 0.00 0.00 0.00 2.75
5064 5269 7.981789 TGTGTTGATACTTGTTAGGATGATCTC 59.018 37.037 0.00 0.00 0.00 2.75
5065 5270 7.439655 GTGTTGATACTTGTTAGGATGATCTCC 59.560 40.741 0.00 0.00 45.33 3.71
5073 5278 3.369381 GGATGATCTCCACCGTGTG 57.631 57.895 0.00 0.00 44.26 3.82
5101 5306 4.089839 CCCACCAGGCCCTTAGAT 57.910 61.111 0.00 0.00 0.00 1.98
5102 5307 1.839894 CCCACCAGGCCCTTAGATC 59.160 63.158 0.00 0.00 0.00 2.75
5103 5308 1.709994 CCCACCAGGCCCTTAGATCC 61.710 65.000 0.00 0.00 0.00 3.36
5104 5309 1.447643 CACCAGGCCCTTAGATCCG 59.552 63.158 0.00 0.00 0.00 4.18
5105 5310 2.427753 CCAGGCCCTTAGATCCGC 59.572 66.667 0.00 0.00 0.00 5.54
5106 5311 2.029666 CAGGCCCTTAGATCCGCG 59.970 66.667 0.00 0.00 0.00 6.46
5107 5312 3.930012 AGGCCCTTAGATCCGCGC 61.930 66.667 0.00 0.00 0.00 6.86
5108 5313 4.990553 GGCCCTTAGATCCGCGCC 62.991 72.222 0.00 0.00 0.00 6.53
5109 5314 4.990553 GCCCTTAGATCCGCGCCC 62.991 72.222 0.00 0.00 0.00 6.13
5110 5315 3.234730 CCCTTAGATCCGCGCCCT 61.235 66.667 0.00 0.00 0.00 5.19
5111 5316 2.029666 CCTTAGATCCGCGCCCTG 59.970 66.667 0.00 0.00 0.00 4.45
5112 5317 2.498941 CCTTAGATCCGCGCCCTGA 61.499 63.158 0.00 0.00 0.00 3.86
5113 5318 1.668294 CTTAGATCCGCGCCCTGAT 59.332 57.895 0.00 0.88 0.00 2.90
5114 5319 0.389166 CTTAGATCCGCGCCCTGATC 60.389 60.000 17.05 17.05 38.10 2.92
5115 5320 2.142357 TTAGATCCGCGCCCTGATCG 62.142 60.000 18.09 0.00 41.76 3.69
5126 5331 4.161295 CTGATCGGGGGCGCTCAA 62.161 66.667 10.74 0.00 0.00 3.02
5127 5332 4.467084 TGATCGGGGGCGCTCAAC 62.467 66.667 10.74 0.00 0.00 3.18
5135 5340 3.813596 GGCGCTCAACCCACTATG 58.186 61.111 7.64 0.00 0.00 2.23
5136 5341 1.819632 GGCGCTCAACCCACTATGG 60.820 63.158 7.64 0.00 37.25 2.74
5137 5342 1.078426 GCGCTCAACCCACTATGGT 60.078 57.895 0.00 0.00 41.55 3.55
5143 5348 3.948735 AACCCACTATGGTTGACGG 57.051 52.632 0.00 0.00 46.76 4.79
5144 5349 0.326927 AACCCACTATGGTTGACGGG 59.673 55.000 1.22 1.22 46.76 5.28
5145 5350 1.451387 CCCACTATGGTTGACGGGC 60.451 63.158 0.00 0.00 35.17 6.13
5146 5351 1.451387 CCACTATGGTTGACGGGCC 60.451 63.158 0.00 0.00 31.35 5.80
5147 5352 1.451387 CACTATGGTTGACGGGCCC 60.451 63.158 13.57 13.57 0.00 5.80
5148 5353 2.192175 CTATGGTTGACGGGCCCC 59.808 66.667 18.66 2.97 0.00 5.80
5149 5354 2.285818 TATGGTTGACGGGCCCCT 60.286 61.111 18.66 3.90 0.00 4.79
5150 5355 2.608970 CTATGGTTGACGGGCCCCTG 62.609 65.000 18.66 5.47 0.00 4.45
5161 5366 3.958860 GCCCCTGTCACCTGCACT 61.959 66.667 0.00 0.00 0.00 4.40
5162 5367 2.592993 GCCCCTGTCACCTGCACTA 61.593 63.158 0.00 0.00 0.00 2.74
5163 5368 1.915078 GCCCCTGTCACCTGCACTAT 61.915 60.000 0.00 0.00 0.00 2.12
5164 5369 1.496060 CCCCTGTCACCTGCACTATA 58.504 55.000 0.00 0.00 0.00 1.31
5165 5370 2.050144 CCCCTGTCACCTGCACTATAT 58.950 52.381 0.00 0.00 0.00 0.86
5166 5371 3.239449 CCCCTGTCACCTGCACTATATA 58.761 50.000 0.00 0.00 0.00 0.86
5167 5372 3.840666 CCCCTGTCACCTGCACTATATAT 59.159 47.826 0.00 0.00 0.00 0.86
5168 5373 5.023452 CCCCTGTCACCTGCACTATATATA 58.977 45.833 0.00 0.00 0.00 0.86
5169 5374 5.483937 CCCCTGTCACCTGCACTATATATAA 59.516 44.000 0.00 0.00 0.00 0.98
5170 5375 6.013725 CCCCTGTCACCTGCACTATATATAAA 60.014 42.308 0.00 0.00 0.00 1.40
5171 5376 7.099764 CCCTGTCACCTGCACTATATATAAAG 58.900 42.308 0.00 0.00 0.00 1.85
5172 5377 7.039011 CCCTGTCACCTGCACTATATATAAAGA 60.039 40.741 0.00 0.00 0.00 2.52
5173 5378 8.031864 CCTGTCACCTGCACTATATATAAAGAG 58.968 40.741 0.00 0.00 0.00 2.85
5174 5379 7.896811 TGTCACCTGCACTATATATAAAGAGG 58.103 38.462 0.00 0.00 0.00 3.69
5175 5380 7.509318 TGTCACCTGCACTATATATAAAGAGGT 59.491 37.037 0.00 0.00 0.00 3.85
5176 5381 7.815068 GTCACCTGCACTATATATAAAGAGGTG 59.185 40.741 21.12 21.12 46.20 4.00
5177 5382 7.039011 TCACCTGCACTATATATAAAGAGGTGG 60.039 40.741 23.74 14.22 45.31 4.61
5178 5383 6.213600 ACCTGCACTATATATAAAGAGGTGGG 59.786 42.308 9.75 6.87 30.04 4.61
5179 5384 6.352222 CCTGCACTATATATAAAGAGGTGGGG 60.352 46.154 9.75 0.00 0.00 4.96
5180 5385 6.088819 TGCACTATATATAAAGAGGTGGGGT 58.911 40.000 9.75 0.00 0.00 4.95
5181 5386 6.212791 TGCACTATATATAAAGAGGTGGGGTC 59.787 42.308 9.75 0.00 0.00 4.46
5182 5387 6.627508 GCACTATATATAAAGAGGTGGGGTCG 60.628 46.154 9.75 0.00 0.00 4.79
5183 5388 5.956563 ACTATATATAAAGAGGTGGGGTCGG 59.043 44.000 0.00 0.00 0.00 4.79
5184 5389 1.125633 TATAAAGAGGTGGGGTCGGC 58.874 55.000 0.00 0.00 0.00 5.54
5185 5390 1.968050 ATAAAGAGGTGGGGTCGGCG 61.968 60.000 0.00 0.00 0.00 6.46
5220 5425 4.112256 CGTCGCAACGCCGTACAC 62.112 66.667 0.00 0.00 42.82 2.90
5221 5426 3.770424 GTCGCAACGCCGTACACC 61.770 66.667 0.00 0.00 0.00 4.16
5224 5429 4.992511 GCAACGCCGTACACCCCA 62.993 66.667 0.00 0.00 0.00 4.96
5225 5430 3.045492 CAACGCCGTACACCCCAC 61.045 66.667 0.00 0.00 0.00 4.61
5226 5431 4.318949 AACGCCGTACACCCCACC 62.319 66.667 0.00 0.00 0.00 4.61
5228 5433 3.069946 CGCCGTACACCCCACCTA 61.070 66.667 0.00 0.00 0.00 3.08
5229 5434 2.580815 GCCGTACACCCCACCTAC 59.419 66.667 0.00 0.00 0.00 3.18
5230 5435 2.285024 GCCGTACACCCCACCTACA 61.285 63.158 0.00 0.00 0.00 2.74
5231 5436 1.619807 GCCGTACACCCCACCTACAT 61.620 60.000 0.00 0.00 0.00 2.29
5232 5437 0.462789 CCGTACACCCCACCTACATC 59.537 60.000 0.00 0.00 0.00 3.06
5233 5438 0.462789 CGTACACCCCACCTACATCC 59.537 60.000 0.00 0.00 0.00 3.51
5234 5439 0.835276 GTACACCCCACCTACATCCC 59.165 60.000 0.00 0.00 0.00 3.85
5235 5440 0.720232 TACACCCCACCTACATCCCT 59.280 55.000 0.00 0.00 0.00 4.20
5236 5441 0.720232 ACACCCCACCTACATCCCTA 59.280 55.000 0.00 0.00 0.00 3.53
5237 5442 1.129058 CACCCCACCTACATCCCTAC 58.871 60.000 0.00 0.00 0.00 3.18
5238 5443 0.030399 ACCCCACCTACATCCCTACC 60.030 60.000 0.00 0.00 0.00 3.18
5239 5444 1.119574 CCCCACCTACATCCCTACCG 61.120 65.000 0.00 0.00 0.00 4.02
5240 5445 0.105862 CCCACCTACATCCCTACCGA 60.106 60.000 0.00 0.00 0.00 4.69
5241 5446 1.482553 CCCACCTACATCCCTACCGAT 60.483 57.143 0.00 0.00 0.00 4.18
5242 5447 2.326428 CCACCTACATCCCTACCGATT 58.674 52.381 0.00 0.00 0.00 3.34
5243 5448 2.704065 CCACCTACATCCCTACCGATTT 59.296 50.000 0.00 0.00 0.00 2.17
5244 5449 3.899360 CCACCTACATCCCTACCGATTTA 59.101 47.826 0.00 0.00 0.00 1.40
5245 5450 4.021368 CCACCTACATCCCTACCGATTTAG 60.021 50.000 0.00 0.00 0.00 1.85
5246 5451 4.021368 CACCTACATCCCTACCGATTTAGG 60.021 50.000 8.56 8.56 43.75 2.69
5254 5459 3.725490 CCTACCGATTTAGGGTTAGTGC 58.275 50.000 0.00 0.00 38.99 4.40
5255 5460 3.133362 CCTACCGATTTAGGGTTAGTGCA 59.867 47.826 0.00 0.00 38.99 4.57
5256 5461 3.261981 ACCGATTTAGGGTTAGTGCAG 57.738 47.619 0.00 0.00 32.70 4.41
5257 5462 2.570302 ACCGATTTAGGGTTAGTGCAGT 59.430 45.455 0.00 0.00 32.70 4.40
5258 5463 2.936498 CCGATTTAGGGTTAGTGCAGTG 59.064 50.000 3.69 0.00 0.00 3.66
5259 5464 2.351726 CGATTTAGGGTTAGTGCAGTGC 59.648 50.000 8.58 8.58 0.00 4.40
5260 5465 3.610911 GATTTAGGGTTAGTGCAGTGCT 58.389 45.455 17.60 0.00 0.00 4.40
5261 5466 2.472695 TTAGGGTTAGTGCAGTGCTG 57.527 50.000 17.60 0.00 0.00 4.41
5262 5467 1.639722 TAGGGTTAGTGCAGTGCTGA 58.360 50.000 17.60 0.00 0.00 4.26
5263 5468 0.035458 AGGGTTAGTGCAGTGCTGAC 59.965 55.000 17.60 7.10 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.971261 GCAAATCTCGTTCGTTTTCACC 59.029 45.455 0.00 0.00 0.00 4.02
1 2 3.613563 TGCAAATCTCGTTCGTTTTCAC 58.386 40.909 0.00 0.00 0.00 3.18
2 3 3.953874 TGCAAATCTCGTTCGTTTTCA 57.046 38.095 0.00 0.00 0.00 2.69
3 4 4.146443 CCTTTGCAAATCTCGTTCGTTTTC 59.854 41.667 13.23 0.00 0.00 2.29
4 5 4.041723 CCTTTGCAAATCTCGTTCGTTTT 58.958 39.130 13.23 0.00 0.00 2.43
5 6 3.550030 CCCTTTGCAAATCTCGTTCGTTT 60.550 43.478 13.23 0.00 0.00 3.60
6 7 2.031157 CCCTTTGCAAATCTCGTTCGTT 60.031 45.455 13.23 0.00 0.00 3.85
7 8 1.535462 CCCTTTGCAAATCTCGTTCGT 59.465 47.619 13.23 0.00 0.00 3.85
8 9 1.535462 ACCCTTTGCAAATCTCGTTCG 59.465 47.619 13.23 0.00 0.00 3.95
9 10 2.351738 CCACCCTTTGCAAATCTCGTTC 60.352 50.000 13.23 0.00 0.00 3.95
10 11 1.613437 CCACCCTTTGCAAATCTCGTT 59.387 47.619 13.23 0.00 0.00 3.85
11 12 1.202879 TCCACCCTTTGCAAATCTCGT 60.203 47.619 13.23 3.70 0.00 4.18
12 13 1.200020 GTCCACCCTTTGCAAATCTCG 59.800 52.381 13.23 0.36 0.00 4.04
13 14 1.200020 CGTCCACCCTTTGCAAATCTC 59.800 52.381 13.23 0.00 0.00 2.75
14 15 1.247567 CGTCCACCCTTTGCAAATCT 58.752 50.000 13.23 0.00 0.00 2.40
15 16 0.388520 GCGTCCACCCTTTGCAAATC 60.389 55.000 13.23 0.00 0.00 2.17
16 17 1.665442 GCGTCCACCCTTTGCAAAT 59.335 52.632 13.23 0.00 0.00 2.32
17 18 2.840066 CGCGTCCACCCTTTGCAAA 61.840 57.895 12.14 12.14 0.00 3.68
18 19 3.283684 CGCGTCCACCCTTTGCAA 61.284 61.111 0.00 0.00 0.00 4.08
19 20 4.555709 ACGCGTCCACCCTTTGCA 62.556 61.111 5.58 0.00 0.00 4.08
20 21 4.025401 CACGCGTCCACCCTTTGC 62.025 66.667 9.86 0.00 0.00 3.68
21 22 3.353836 CCACGCGTCCACCCTTTG 61.354 66.667 9.86 0.00 0.00 2.77
22 23 2.890766 ATCCACGCGTCCACCCTTT 61.891 57.895 9.86 0.00 0.00 3.11
23 24 3.319198 ATCCACGCGTCCACCCTT 61.319 61.111 9.86 0.00 0.00 3.95
24 25 4.082523 CATCCACGCGTCCACCCT 62.083 66.667 9.86 0.00 0.00 4.34
30 31 4.451150 TCAGGCCATCCACGCGTC 62.451 66.667 9.86 0.00 33.74 5.19
31 32 4.457496 CTCAGGCCATCCACGCGT 62.457 66.667 5.58 5.58 33.74 6.01
33 34 3.112205 ATCCTCAGGCCATCCACGC 62.112 63.158 5.01 0.00 33.74 5.34
34 35 1.227764 CATCCTCAGGCCATCCACG 60.228 63.158 5.01 0.00 33.74 4.94
35 36 1.150081 CCATCCTCAGGCCATCCAC 59.850 63.158 5.01 0.00 33.74 4.02
36 37 2.760378 GCCATCCTCAGGCCATCCA 61.760 63.158 5.01 0.00 46.50 3.41
37 38 2.114838 GCCATCCTCAGGCCATCC 59.885 66.667 5.01 0.00 46.50 3.51
43 44 1.225704 GAACCCAGCCATCCTCAGG 59.774 63.158 0.00 0.00 0.00 3.86
44 45 1.225704 GGAACCCAGCCATCCTCAG 59.774 63.158 0.00 0.00 0.00 3.35
45 46 0.044092 TAGGAACCCAGCCATCCTCA 59.956 55.000 0.00 0.00 42.53 3.86
46 47 1.349357 GATAGGAACCCAGCCATCCTC 59.651 57.143 0.00 0.00 42.53 3.71
47 48 1.439543 GATAGGAACCCAGCCATCCT 58.560 55.000 0.00 0.00 45.39 3.24
48 49 0.035458 CGATAGGAACCCAGCCATCC 59.965 60.000 0.00 0.00 0.00 3.51
49 50 0.759346 ACGATAGGAACCCAGCCATC 59.241 55.000 0.00 0.00 43.77 3.51
50 51 0.759346 GACGATAGGAACCCAGCCAT 59.241 55.000 0.00 0.00 43.77 4.40
51 52 0.616395 TGACGATAGGAACCCAGCCA 60.616 55.000 0.00 0.00 43.77 4.75
52 53 0.759346 ATGACGATAGGAACCCAGCC 59.241 55.000 0.00 0.00 43.77 4.85
53 54 2.622064 AATGACGATAGGAACCCAGC 57.378 50.000 0.00 0.00 43.77 4.85
54 55 7.386851 ACATATAAATGACGATAGGAACCCAG 58.613 38.462 0.00 0.00 37.13 4.45
55 56 7.311092 ACATATAAATGACGATAGGAACCCA 57.689 36.000 0.00 0.00 37.13 4.51
56 57 9.715121 TTAACATATAAATGACGATAGGAACCC 57.285 33.333 0.00 0.00 37.13 4.11
83 84 9.715121 CATGCAAGGCCAATAAATATCTTTAAT 57.285 29.630 5.01 0.00 30.88 1.40
84 85 8.922237 TCATGCAAGGCCAATAAATATCTTTAA 58.078 29.630 5.01 0.00 30.88 1.52
85 86 8.476064 TCATGCAAGGCCAATAAATATCTTTA 57.524 30.769 5.01 0.00 0.00 1.85
86 87 7.364149 TCATGCAAGGCCAATAAATATCTTT 57.636 32.000 5.01 0.00 0.00 2.52
87 88 6.982160 TCATGCAAGGCCAATAAATATCTT 57.018 33.333 5.01 0.00 0.00 2.40
88 89 7.453752 AGAATCATGCAAGGCCAATAAATATCT 59.546 33.333 5.01 0.00 0.00 1.98
89 90 7.609056 AGAATCATGCAAGGCCAATAAATATC 58.391 34.615 5.01 0.00 0.00 1.63
90 91 7.549147 AGAATCATGCAAGGCCAATAAATAT 57.451 32.000 5.01 0.00 0.00 1.28
91 92 6.982160 AGAATCATGCAAGGCCAATAAATA 57.018 33.333 5.01 0.00 0.00 1.40
92 93 5.881923 AGAATCATGCAAGGCCAATAAAT 57.118 34.783 5.01 0.00 0.00 1.40
93 94 6.788598 TTAGAATCATGCAAGGCCAATAAA 57.211 33.333 5.01 0.00 0.00 1.40
94 95 6.788598 TTTAGAATCATGCAAGGCCAATAA 57.211 33.333 5.01 0.00 0.00 1.40
95 96 6.788598 TTTTAGAATCATGCAAGGCCAATA 57.211 33.333 5.01 0.00 0.00 1.90
96 97 5.680594 TTTTAGAATCATGCAAGGCCAAT 57.319 34.783 5.01 0.00 0.00 3.16
97 98 5.480642 TTTTTAGAATCATGCAAGGCCAA 57.519 34.783 5.01 0.00 0.00 4.52
116 117 8.362639 CCCATGTAAATATCATGCTAGCTTTTT 58.637 33.333 17.23 9.37 40.63 1.94
117 118 7.506938 ACCCATGTAAATATCATGCTAGCTTTT 59.493 33.333 17.23 8.50 40.63 2.27
118 119 7.006509 ACCCATGTAAATATCATGCTAGCTTT 58.993 34.615 17.23 9.29 40.63 3.51
119 120 6.546484 ACCCATGTAAATATCATGCTAGCTT 58.454 36.000 17.23 6.81 40.63 3.74
120 121 6.131972 ACCCATGTAAATATCATGCTAGCT 57.868 37.500 17.23 0.00 40.63 3.32
121 122 6.207417 ACAACCCATGTAAATATCATGCTAGC 59.793 38.462 8.10 8.10 41.63 3.42
122 123 7.360353 CGACAACCCATGTAAATATCATGCTAG 60.360 40.741 0.00 0.00 44.12 3.42
123 124 6.426633 CGACAACCCATGTAAATATCATGCTA 59.573 38.462 0.00 0.00 44.12 3.49
124 125 5.239306 CGACAACCCATGTAAATATCATGCT 59.761 40.000 0.00 0.00 44.12 3.79
125 126 5.451908 CGACAACCCATGTAAATATCATGC 58.548 41.667 0.00 0.00 44.12 4.06
126 127 5.530915 ACCGACAACCCATGTAAATATCATG 59.469 40.000 0.00 0.00 44.12 3.07
127 128 5.690865 ACCGACAACCCATGTAAATATCAT 58.309 37.500 0.00 0.00 44.12 2.45
128 129 5.105567 ACCGACAACCCATGTAAATATCA 57.894 39.130 0.00 0.00 44.12 2.15
129 130 6.445357 AAACCGACAACCCATGTAAATATC 57.555 37.500 0.00 0.00 44.12 1.63
130 131 6.844097 AAAACCGACAACCCATGTAAATAT 57.156 33.333 0.00 0.00 44.12 1.28
131 132 6.651975 AAAAACCGACAACCCATGTAAATA 57.348 33.333 0.00 0.00 44.12 1.40
132 133 5.538849 AAAAACCGACAACCCATGTAAAT 57.461 34.783 0.00 0.00 44.12 1.40
152 153 9.601971 GTAATCTAACGTTGCAAAGACATAAAA 57.398 29.630 19.51 0.00 0.00 1.52
153 154 8.995220 AGTAATCTAACGTTGCAAAGACATAAA 58.005 29.630 19.51 0.09 0.00 1.40
154 155 8.542497 AGTAATCTAACGTTGCAAAGACATAA 57.458 30.769 19.51 1.10 0.00 1.90
155 156 9.297586 CTAGTAATCTAACGTTGCAAAGACATA 57.702 33.333 19.51 7.97 0.00 2.29
156 157 7.817962 ACTAGTAATCTAACGTTGCAAAGACAT 59.182 33.333 19.51 7.26 0.00 3.06
157 158 7.149973 ACTAGTAATCTAACGTTGCAAAGACA 58.850 34.615 19.51 5.09 0.00 3.41
158 159 7.578169 ACTAGTAATCTAACGTTGCAAAGAC 57.422 36.000 19.51 4.81 0.00 3.01
159 160 8.298854 TGTACTAGTAATCTAACGTTGCAAAGA 58.701 33.333 19.51 10.16 0.00 2.52
160 161 8.371053 GTGTACTAGTAATCTAACGTTGCAAAG 58.629 37.037 11.99 11.02 0.00 2.77
161 162 8.084073 AGTGTACTAGTAATCTAACGTTGCAAA 58.916 33.333 11.99 0.00 0.00 3.68
162 163 7.539710 CAGTGTACTAGTAATCTAACGTTGCAA 59.460 37.037 11.99 0.00 0.00 4.08
163 164 7.025365 CAGTGTACTAGTAATCTAACGTTGCA 58.975 38.462 11.99 0.00 0.00 4.08
164 165 7.025963 ACAGTGTACTAGTAATCTAACGTTGC 58.974 38.462 11.99 0.00 0.00 4.17
165 166 8.232513 TGACAGTGTACTAGTAATCTAACGTTG 58.767 37.037 11.99 0.97 0.00 4.10
166 167 8.327941 TGACAGTGTACTAGTAATCTAACGTT 57.672 34.615 5.88 5.88 0.00 3.99
167 168 7.912056 TGACAGTGTACTAGTAATCTAACGT 57.088 36.000 3.61 1.35 0.00 3.99
168 169 9.275231 CTTTGACAGTGTACTAGTAATCTAACG 57.725 37.037 3.61 0.00 0.00 3.18
169 170 9.570488 CCTTTGACAGTGTACTAGTAATCTAAC 57.430 37.037 3.61 0.00 0.00 2.34
170 171 8.248945 GCCTTTGACAGTGTACTAGTAATCTAA 58.751 37.037 3.61 1.36 0.00 2.10
171 172 7.395206 TGCCTTTGACAGTGTACTAGTAATCTA 59.605 37.037 3.61 0.00 0.00 1.98
172 173 6.210784 TGCCTTTGACAGTGTACTAGTAATCT 59.789 38.462 3.61 3.38 0.00 2.40
173 174 6.395629 TGCCTTTGACAGTGTACTAGTAATC 58.604 40.000 3.61 0.98 0.00 1.75
174 175 6.354794 TGCCTTTGACAGTGTACTAGTAAT 57.645 37.500 3.61 0.00 0.00 1.89
175 176 5.794726 TGCCTTTGACAGTGTACTAGTAA 57.205 39.130 3.61 0.00 0.00 2.24
176 177 5.995565 ATGCCTTTGACAGTGTACTAGTA 57.004 39.130 0.00 0.00 0.00 1.82
177 178 4.891992 ATGCCTTTGACAGTGTACTAGT 57.108 40.909 0.00 0.00 0.00 2.57
178 179 5.237815 TCAATGCCTTTGACAGTGTACTAG 58.762 41.667 0.00 0.00 39.44 2.57
179 180 5.221641 ACTCAATGCCTTTGACAGTGTACTA 60.222 40.000 0.00 0.00 39.44 1.82
180 181 4.067896 CTCAATGCCTTTGACAGTGTACT 58.932 43.478 0.00 0.00 39.44 2.73
181 182 3.815401 ACTCAATGCCTTTGACAGTGTAC 59.185 43.478 0.00 0.00 39.44 2.90
182 183 4.085357 ACTCAATGCCTTTGACAGTGTA 57.915 40.909 0.00 0.00 39.44 2.90
183 184 2.936202 ACTCAATGCCTTTGACAGTGT 58.064 42.857 0.00 0.00 39.44 3.55
184 185 4.318332 TCTACTCAATGCCTTTGACAGTG 58.682 43.478 0.00 0.00 39.44 3.66
185 186 4.623932 TCTACTCAATGCCTTTGACAGT 57.376 40.909 0.00 0.00 39.44 3.55
186 187 4.201891 GCATCTACTCAATGCCTTTGACAG 60.202 45.833 0.00 0.00 42.95 3.51
187 188 3.691118 GCATCTACTCAATGCCTTTGACA 59.309 43.478 0.00 0.00 42.95 3.58
188 189 4.284378 GCATCTACTCAATGCCTTTGAC 57.716 45.455 0.00 0.00 42.95 3.18
196 197 5.886992 TGATGCAAAAGCATCTACTCAATG 58.113 37.500 25.24 0.00 44.75 2.82
197 198 6.504398 CATGATGCAAAAGCATCTACTCAAT 58.496 36.000 25.24 11.02 44.75 2.57
198 199 5.677852 GCATGATGCAAAAGCATCTACTCAA 60.678 40.000 25.24 9.44 44.26 3.02
199 200 4.201980 GCATGATGCAAAAGCATCTACTCA 60.202 41.667 25.24 11.42 44.26 3.41
200 201 4.288531 GCATGATGCAAAAGCATCTACTC 58.711 43.478 25.24 12.03 44.26 2.59
201 202 4.303086 GCATGATGCAAAAGCATCTACT 57.697 40.909 25.24 11.62 44.26 2.57
214 215 6.789262 ACTCAACAAATAGTAAGCATGATGC 58.211 36.000 9.89 9.89 45.46 3.91
217 218 9.665719 TCATAACTCAACAAATAGTAAGCATGA 57.334 29.630 0.00 0.00 0.00 3.07
258 259 9.871238 GAGACAACACTCTATAATAAAGGTCAA 57.129 33.333 0.00 0.00 34.47 3.18
259 260 9.031537 TGAGACAACACTCTATAATAAAGGTCA 57.968 33.333 0.00 0.00 37.73 4.02
260 261 9.303537 GTGAGACAACACTCTATAATAAAGGTC 57.696 37.037 0.00 0.00 37.73 3.85
261 262 8.258708 GGTGAGACAACACTCTATAATAAAGGT 58.741 37.037 0.00 0.00 40.22 3.50
262 263 7.435488 CGGTGAGACAACACTCTATAATAAAGG 59.565 40.741 0.00 0.00 40.22 3.11
263 264 8.188799 TCGGTGAGACAACACTCTATAATAAAG 58.811 37.037 0.00 0.00 40.22 1.85
264 265 8.058667 TCGGTGAGACAACACTCTATAATAAA 57.941 34.615 0.00 0.00 40.22 1.40
265 266 7.555195 TCTCGGTGAGACAACACTCTATAATAA 59.445 37.037 0.00 0.00 40.22 1.40
266 267 7.052248 TCTCGGTGAGACAACACTCTATAATA 58.948 38.462 0.00 0.00 40.22 0.98
267 268 5.886474 TCTCGGTGAGACAACACTCTATAAT 59.114 40.000 0.00 0.00 40.22 1.28
268 269 5.250982 TCTCGGTGAGACAACACTCTATAA 58.749 41.667 0.00 0.00 40.22 0.98
269 270 4.840271 TCTCGGTGAGACAACACTCTATA 58.160 43.478 0.00 0.00 40.22 1.31
270 271 3.687125 TCTCGGTGAGACAACACTCTAT 58.313 45.455 0.00 0.00 40.22 1.98
271 272 3.075148 CTCTCGGTGAGACAACACTCTA 58.925 50.000 0.83 0.00 45.39 2.43
272 273 1.883275 CTCTCGGTGAGACAACACTCT 59.117 52.381 0.83 0.00 45.39 3.24
273 274 1.667467 GCTCTCGGTGAGACAACACTC 60.667 57.143 11.04 0.00 45.39 3.51
274 275 0.315568 GCTCTCGGTGAGACAACACT 59.684 55.000 11.04 0.00 45.39 3.55
275 276 2.815722 GCTCTCGGTGAGACAACAC 58.184 57.895 11.04 0.00 45.39 3.32
281 282 1.979155 CTGGTGGCTCTCGGTGAGA 60.979 63.158 11.04 0.00 45.39 3.27
282 283 1.536073 TTCTGGTGGCTCTCGGTGAG 61.536 60.000 2.77 2.77 45.33 3.51
283 284 1.118965 TTTCTGGTGGCTCTCGGTGA 61.119 55.000 0.00 0.00 0.00 4.02
284 285 0.250295 TTTTCTGGTGGCTCTCGGTG 60.250 55.000 0.00 0.00 0.00 4.94
285 286 0.472471 TTTTTCTGGTGGCTCTCGGT 59.528 50.000 0.00 0.00 0.00 4.69
286 287 3.322514 TTTTTCTGGTGGCTCTCGG 57.677 52.632 0.00 0.00 0.00 4.63
331 332 1.903877 GCTCAGTCAGGCCTTGGCTA 61.904 60.000 0.00 0.00 40.58 3.93
390 391 3.605634 TCGACATGTTTGGTTAGATGGG 58.394 45.455 0.00 0.00 0.00 4.00
391 392 5.621197 TTTCGACATGTTTGGTTAGATGG 57.379 39.130 0.00 0.00 0.00 3.51
392 393 8.233868 TGTAATTTCGACATGTTTGGTTAGATG 58.766 33.333 0.00 0.00 0.00 2.90
393 394 8.330466 TGTAATTTCGACATGTTTGGTTAGAT 57.670 30.769 0.00 0.00 0.00 1.98
394 395 7.731882 TGTAATTTCGACATGTTTGGTTAGA 57.268 32.000 0.00 0.00 0.00 2.10
395 396 8.450964 AGATGTAATTTCGACATGTTTGGTTAG 58.549 33.333 0.00 0.00 37.65 2.34
397 398 7.214467 AGATGTAATTTCGACATGTTTGGTT 57.786 32.000 0.00 0.00 37.65 3.67
398 399 6.817765 AGATGTAATTTCGACATGTTTGGT 57.182 33.333 0.00 0.00 37.65 3.67
399 400 8.519492 AAAAGATGTAATTTCGACATGTTTGG 57.481 30.769 12.94 0.00 45.09 3.28
403 404 9.840427 CCTTAAAAAGATGTAATTTCGACATGT 57.160 29.630 0.00 0.00 37.65 3.21
404 405 9.289303 CCCTTAAAAAGATGTAATTTCGACATG 57.711 33.333 0.00 0.00 37.65 3.21
405 406 9.238368 TCCCTTAAAAAGATGTAATTTCGACAT 57.762 29.630 0.00 0.00 40.25 3.06
406 407 8.624367 TCCCTTAAAAAGATGTAATTTCGACA 57.376 30.769 0.00 0.00 0.00 4.35
473 474 5.596772 TGGTTCCTTCGACTACATGATATCA 59.403 40.000 8.10 8.10 0.00 2.15
474 475 5.921408 GTGGTTCCTTCGACTACATGATATC 59.079 44.000 0.00 0.00 0.00 1.63
487 488 2.169832 AGACATGTGTGGTTCCTTCG 57.830 50.000 1.15 0.00 0.00 3.79
492 493 2.301870 TGGAGGTAGACATGTGTGGTTC 59.698 50.000 1.15 0.00 0.00 3.62
499 500 4.684724 TCTTTAGGTGGAGGTAGACATGT 58.315 43.478 0.00 0.00 0.00 3.21
500 501 5.878406 ATCTTTAGGTGGAGGTAGACATG 57.122 43.478 0.00 0.00 0.00 3.21
501 502 7.844779 TCTTTATCTTTAGGTGGAGGTAGACAT 59.155 37.037 0.00 0.00 0.00 3.06
502 503 7.186972 TCTTTATCTTTAGGTGGAGGTAGACA 58.813 38.462 0.00 0.00 0.00 3.41
531 532 5.163311 TGAGGCTGATAGTAGCATTGCTAAA 60.163 40.000 19.55 11.51 43.07 1.85
542 543 9.026121 GGTCTAGAAATTATGAGGCTGATAGTA 57.974 37.037 0.00 0.00 0.00 1.82
543 544 7.732593 AGGTCTAGAAATTATGAGGCTGATAGT 59.267 37.037 0.00 0.00 0.00 2.12
565 566 6.371809 TTCGGCATGTTAAATTATGAGGTC 57.628 37.500 0.00 0.00 0.00 3.85
583 584 4.900635 ATGTCTGGAATGTAATTTCGGC 57.099 40.909 0.00 0.00 38.13 5.54
666 668 1.235724 GCCTAGACACGGCTTGTTTT 58.764 50.000 0.00 0.00 44.17 2.43
672 674 1.000019 TACAGGCCTAGACACGGCT 60.000 57.895 3.98 0.00 46.73 5.52
749 793 1.142748 CCCGAACAGAGCTGGCTAG 59.857 63.158 0.00 0.00 34.19 3.42
751 795 2.604686 TCCCGAACAGAGCTGGCT 60.605 61.111 0.00 0.00 34.19 4.75
757 801 1.333636 ATCCAGCCTCCCGAACAGAG 61.334 60.000 0.00 0.00 0.00 3.35
766 810 1.130054 TGCATCCCTATCCAGCCTCC 61.130 60.000 0.00 0.00 0.00 4.30
782 826 0.251698 TGGCATGATTGTTCCCTGCA 60.252 50.000 0.00 0.00 33.45 4.41
786 830 2.887152 GACCTATGGCATGATTGTTCCC 59.113 50.000 10.98 0.00 0.00 3.97
811 856 2.747855 GGGAGTGCAAGCGGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
837 882 7.027874 AGGTGAATCCTCCACTTTTATGTAA 57.972 36.000 0.00 0.00 44.42 2.41
838 883 6.636454 AGGTGAATCCTCCACTTTTATGTA 57.364 37.500 0.00 0.00 44.42 2.29
840 885 7.938140 TTTAGGTGAATCCTCCACTTTTATG 57.062 36.000 0.00 0.00 44.42 1.90
893 938 9.764363 GATCTTTTCCTCCACTTTTATGTTTTT 57.236 29.630 0.00 0.00 0.00 1.94
894 939 8.367911 GGATCTTTTCCTCCACTTTTATGTTTT 58.632 33.333 0.00 0.00 41.78 2.43
895 940 7.039011 GGGATCTTTTCCTCCACTTTTATGTTT 60.039 37.037 0.00 0.00 44.75 2.83
896 941 6.437477 GGGATCTTTTCCTCCACTTTTATGTT 59.563 38.462 0.00 0.00 44.75 2.71
897 942 5.952347 GGGATCTTTTCCTCCACTTTTATGT 59.048 40.000 0.00 0.00 44.75 2.29
898 943 5.066505 CGGGATCTTTTCCTCCACTTTTATG 59.933 44.000 0.00 0.00 44.75 1.90
899 944 5.193679 CGGGATCTTTTCCTCCACTTTTAT 58.806 41.667 0.00 0.00 44.75 1.40
900 945 4.566907 CCGGGATCTTTTCCTCCACTTTTA 60.567 45.833 0.00 0.00 44.75 1.52
901 946 3.421844 CGGGATCTTTTCCTCCACTTTT 58.578 45.455 0.00 0.00 44.75 2.27
902 947 2.290960 CCGGGATCTTTTCCTCCACTTT 60.291 50.000 0.00 0.00 44.75 2.66
903 948 1.282157 CCGGGATCTTTTCCTCCACTT 59.718 52.381 0.00 0.00 44.75 3.16
904 949 0.912486 CCGGGATCTTTTCCTCCACT 59.088 55.000 0.00 0.00 44.75 4.00
905 950 0.618981 ACCGGGATCTTTTCCTCCAC 59.381 55.000 6.32 0.00 44.75 4.02
906 951 0.909623 GACCGGGATCTTTTCCTCCA 59.090 55.000 6.32 0.00 44.75 3.86
907 952 0.179081 CGACCGGGATCTTTTCCTCC 60.179 60.000 6.32 0.00 44.75 4.30
908 953 0.822164 TCGACCGGGATCTTTTCCTC 59.178 55.000 6.32 0.00 44.75 3.71
909 954 1.272807 TTCGACCGGGATCTTTTCCT 58.727 50.000 6.32 0.00 44.75 3.36
910 955 2.210961 GATTCGACCGGGATCTTTTCC 58.789 52.381 6.32 0.00 44.62 3.13
911 956 2.210961 GGATTCGACCGGGATCTTTTC 58.789 52.381 6.32 0.00 0.00 2.29
912 957 1.557832 TGGATTCGACCGGGATCTTTT 59.442 47.619 6.32 0.00 0.00 2.27
944 989 1.556911 GATGAAGGAAGAGTCTGGGCA 59.443 52.381 0.00 0.00 0.00 5.36
964 1009 1.334869 GTTTGGACACAGGCACTCAAG 59.665 52.381 0.00 0.00 34.60 3.02
1028 1073 0.179189 GATGTTCCTTTGCTTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
1086 1131 4.048470 GGGAGGGGGACTGTTGCC 62.048 72.222 0.00 0.00 0.00 4.52
1144 1189 5.192522 AGAATCCCTATGAGAAAGCAAGGAA 59.807 40.000 0.00 0.00 0.00 3.36
1217 1262 1.134220 TCACCAAAACGCTGTCCTCTT 60.134 47.619 0.00 0.00 0.00 2.85
1330 1375 3.615110 CGAGAAGAAAGAGCAGCCTAACA 60.615 47.826 0.00 0.00 0.00 2.41
1388 1433 6.098017 GGCTTCTTACAATACAGTACGAGTT 58.902 40.000 0.00 0.00 0.00 3.01
1498 1543 7.171630 TGTGAAAACTTAAAGGCCAAACTTA 57.828 32.000 5.01 0.00 0.00 2.24
1499 1544 6.043854 TGTGAAAACTTAAAGGCCAAACTT 57.956 33.333 5.01 0.00 0.00 2.66
1500 1545 5.669164 TGTGAAAACTTAAAGGCCAAACT 57.331 34.783 5.01 0.00 0.00 2.66
1501 1546 6.592220 TCTTTGTGAAAACTTAAAGGCCAAAC 59.408 34.615 5.01 0.00 32.48 2.93
1502 1547 6.702329 TCTTTGTGAAAACTTAAAGGCCAAA 58.298 32.000 5.01 0.00 32.48 3.28
1503 1548 6.071051 ACTCTTTGTGAAAACTTAAAGGCCAA 60.071 34.615 5.01 0.00 32.48 4.52
1504 1549 5.420739 ACTCTTTGTGAAAACTTAAAGGCCA 59.579 36.000 5.01 0.00 32.48 5.36
1505 1550 5.902681 ACTCTTTGTGAAAACTTAAAGGCC 58.097 37.500 0.00 0.00 32.48 5.19
1506 1551 7.009265 GTGAACTCTTTGTGAAAACTTAAAGGC 59.991 37.037 0.00 0.00 32.48 4.35
1507 1552 7.488150 GGTGAACTCTTTGTGAAAACTTAAAGG 59.512 37.037 0.00 0.00 32.48 3.11
1508 1553 8.244113 AGGTGAACTCTTTGTGAAAACTTAAAG 58.756 33.333 0.00 0.00 0.00 1.85
1509 1554 8.117813 AGGTGAACTCTTTGTGAAAACTTAAA 57.882 30.769 0.00 0.00 0.00 1.52
1510 1555 7.696992 AGGTGAACTCTTTGTGAAAACTTAA 57.303 32.000 0.00 0.00 0.00 1.85
1687 1735 7.254522 CGAAACAGCACCTAGTAGTTAACAAAA 60.255 37.037 8.61 0.00 0.00 2.44
1944 1992 7.224557 GTGAAACCAGTCATTTACAGCAAAATT 59.775 33.333 0.00 0.00 0.00 1.82
2159 2207 6.074648 ACCTTGTCAATTTTAGGGAACATCA 58.925 36.000 0.00 0.00 31.91 3.07
2221 2269 2.850290 CAACACATCCCCCACCCA 59.150 61.111 0.00 0.00 0.00 4.51
2224 2272 2.143876 ATTAGCAACACATCCCCCAC 57.856 50.000 0.00 0.00 0.00 4.61
2225 2273 2.830923 CAAATTAGCAACACATCCCCCA 59.169 45.455 0.00 0.00 0.00 4.96
2304 2352 2.352651 TGATTGTCGCAAGCTTCTATGC 59.647 45.455 0.00 0.00 39.17 3.14
2410 2458 7.179694 ACAAATCCTTGAAGATGAACATCCATT 59.820 33.333 10.63 0.95 36.13 3.16
3053 3251 2.673775 TTCCCATCTTGCAAACCTCA 57.326 45.000 0.00 0.00 0.00 3.86
3152 3350 3.780693 CGTACACACGCATCCCTG 58.219 61.111 0.00 0.00 42.05 4.45
3220 3418 0.821711 TCCCAACTTTGTTGCCCGAG 60.822 55.000 5.04 0.00 0.00 4.63
3223 3421 1.341209 CTCTTCCCAACTTTGTTGCCC 59.659 52.381 5.04 0.00 0.00 5.36
3285 3483 2.196997 CTCGTGCCCATCCTTTCCCA 62.197 60.000 0.00 0.00 0.00 4.37
3289 3487 1.002134 CACCTCGTGCCCATCCTTT 60.002 57.895 0.00 0.00 0.00 3.11
3355 3553 0.969149 AGAGTCGATGGCACTGACAA 59.031 50.000 19.39 0.00 35.09 3.18
3419 3617 2.996621 CACTCAAATTCTGACCGAGTCC 59.003 50.000 0.00 0.00 34.79 3.85
3420 3618 3.430218 CACACTCAAATTCTGACCGAGTC 59.570 47.826 0.00 0.00 34.79 3.36
3421 3619 3.181465 ACACACTCAAATTCTGACCGAGT 60.181 43.478 0.00 0.00 37.42 4.18
3422 3620 3.185188 CACACACTCAAATTCTGACCGAG 59.815 47.826 0.00 0.00 0.00 4.63
3423 3621 3.130633 CACACACTCAAATTCTGACCGA 58.869 45.455 0.00 0.00 0.00 4.69
3424 3622 2.224079 CCACACACTCAAATTCTGACCG 59.776 50.000 0.00 0.00 0.00 4.79
3425 3623 3.214328 ACCACACACTCAAATTCTGACC 58.786 45.455 0.00 0.00 0.00 4.02
3426 3624 5.177696 GTCTACCACACACTCAAATTCTGAC 59.822 44.000 0.00 0.00 0.00 3.51
3427 3625 5.163353 TGTCTACCACACACTCAAATTCTGA 60.163 40.000 0.00 0.00 0.00 3.27
3428 3626 5.056480 TGTCTACCACACACTCAAATTCTG 58.944 41.667 0.00 0.00 0.00 3.02
3452 3650 4.313020 AAGATTGCCTCATCTCCAACTT 57.687 40.909 0.00 0.00 0.00 2.66
3487 3685 7.518188 TCTTAATCCTTAATCCATTCCACCTC 58.482 38.462 0.00 0.00 0.00 3.85
3520 3718 5.293079 GCTCCATTCACACTTCTATTCAGAC 59.707 44.000 0.00 0.00 0.00 3.51
3613 3811 6.149973 ACATGGACACTGATAAATGTGTGAAG 59.850 38.462 3.41 0.00 45.94 3.02
3614 3812 6.003326 ACATGGACACTGATAAATGTGTGAA 58.997 36.000 3.41 0.00 45.94 3.18
3697 3895 6.549364 ACACATGGTAGAAAGGAAAACAATCA 59.451 34.615 0.00 0.00 0.00 2.57
3765 3963 9.725019 CTAAATTGCCTATACCATCTATTCACA 57.275 33.333 0.00 0.00 0.00 3.58
3784 3982 6.560253 AAGTTAGTGCTGGTGTCTAAATTG 57.440 37.500 0.00 0.00 33.08 2.32
3796 3994 5.006746 ACAACGAGAAAGAAAGTTAGTGCTG 59.993 40.000 0.00 0.00 0.00 4.41
3838 4036 3.309582 GGGAGATCTGCCCAACGA 58.690 61.111 22.16 0.00 45.31 3.85
4153 4352 4.662145 CACTGGTTGTCTCAAAAGTCAAC 58.338 43.478 6.90 6.90 45.23 3.18
4167 4366 6.926826 TCCAATAATATAGTACGCACTGGTTG 59.073 38.462 0.00 0.00 36.14 3.77
4275 4474 3.511146 TGGAAAAGCATTCCAATGACTCC 59.489 43.478 18.52 0.41 44.90 3.85
4318 4517 4.829872 AAAATGATGTTGGATGGCATGT 57.170 36.364 3.81 0.00 0.00 3.21
4464 4663 5.485209 ACTCCCTCCGTTCCATATTAATC 57.515 43.478 0.00 0.00 0.00 1.75
4477 4681 3.068307 CCAGATAAACACTACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
4490 4694 3.338249 TGTGAGCTGCTTCCAGATAAAC 58.662 45.455 2.53 0.00 41.77 2.01
4604 4808 7.108194 TCATATGAACAGAGTGCAAGAGAAAT 58.892 34.615 1.98 0.00 0.00 2.17
4605 4809 6.466812 TCATATGAACAGAGTGCAAGAGAAA 58.533 36.000 1.98 0.00 0.00 2.52
4611 4815 8.400186 CACATAAATCATATGAACAGAGTGCAA 58.600 33.333 9.99 0.00 0.00 4.08
4790 4995 3.828921 ACTTTTACCCAAGGTGAAGACC 58.171 45.455 14.74 0.00 43.52 3.85
4867 5072 8.034804 ACATGTAGGAAAAATAATGAAGGCAAC 58.965 33.333 0.00 0.00 0.00 4.17
4941 5146 8.839343 TGGCTAATATTCATACTGAAACATGTG 58.161 33.333 0.00 0.00 40.12 3.21
5084 5289 1.709994 GGATCTAAGGGCCTGGTGGG 61.710 65.000 6.92 0.00 38.36 4.61
5085 5290 1.839894 GGATCTAAGGGCCTGGTGG 59.160 63.158 6.92 0.00 0.00 4.61
5086 5291 1.447643 CGGATCTAAGGGCCTGGTG 59.552 63.158 6.92 0.00 0.00 4.17
5087 5292 2.444256 GCGGATCTAAGGGCCTGGT 61.444 63.158 6.92 0.00 0.00 4.00
5088 5293 2.427753 GCGGATCTAAGGGCCTGG 59.572 66.667 6.92 3.17 0.00 4.45
5089 5294 2.029666 CGCGGATCTAAGGGCCTG 59.970 66.667 6.92 0.00 0.00 4.85
5090 5295 3.930012 GCGCGGATCTAAGGGCCT 61.930 66.667 8.83 0.00 39.91 5.19
5092 5297 4.990553 GGGCGCGGATCTAAGGGC 62.991 72.222 8.83 13.72 44.19 5.19
5093 5298 3.234730 AGGGCGCGGATCTAAGGG 61.235 66.667 8.83 0.00 0.00 3.95
5094 5299 1.821061 ATCAGGGCGCGGATCTAAGG 61.821 60.000 8.83 0.00 0.00 2.69
5095 5300 0.389166 GATCAGGGCGCGGATCTAAG 60.389 60.000 28.34 1.14 37.52 2.18
5096 5301 1.666011 GATCAGGGCGCGGATCTAA 59.334 57.895 28.34 0.00 37.52 2.10
5097 5302 2.626780 CGATCAGGGCGCGGATCTA 61.627 63.158 30.69 2.82 38.18 1.98
5098 5303 3.983494 CGATCAGGGCGCGGATCT 61.983 66.667 30.69 9.16 38.18 2.75
5116 5321 3.043999 ATAGTGGGTTGAGCGCCCC 62.044 63.158 12.14 12.14 45.49 5.80
5117 5322 1.819632 CATAGTGGGTTGAGCGCCC 60.820 63.158 2.29 0.00 46.26 6.13
5118 5323 1.819632 CCATAGTGGGTTGAGCGCC 60.820 63.158 2.29 0.00 32.67 6.53
5119 5324 1.078426 ACCATAGTGGGTTGAGCGC 60.078 57.895 0.00 0.00 43.37 5.92
5126 5331 1.988015 CCCGTCAACCATAGTGGGT 59.012 57.895 0.52 0.00 43.37 4.51
5127 5332 1.451387 GCCCGTCAACCATAGTGGG 60.451 63.158 0.52 0.00 43.37 4.61
5128 5333 1.451387 GGCCCGTCAACCATAGTGG 60.451 63.158 0.00 0.00 45.02 4.00
5129 5334 1.451387 GGGCCCGTCAACCATAGTG 60.451 63.158 5.69 0.00 0.00 2.74
5130 5335 2.676265 GGGGCCCGTCAACCATAGT 61.676 63.158 17.79 0.00 0.00 2.12
5131 5336 2.192175 GGGGCCCGTCAACCATAG 59.808 66.667 17.79 0.00 0.00 2.23
5132 5337 2.285818 AGGGGCCCGTCAACCATA 60.286 61.111 18.95 0.00 0.00 2.74
5133 5338 4.047125 CAGGGGCCCGTCAACCAT 62.047 66.667 18.95 0.00 0.00 3.55
5135 5340 4.717313 GACAGGGGCCCGTCAACC 62.717 72.222 30.08 12.98 31.22 3.77
5136 5341 3.948719 TGACAGGGGCCCGTCAAC 61.949 66.667 33.24 19.43 35.45 3.18
5137 5342 3.948719 GTGACAGGGGCCCGTCAA 61.949 66.667 35.33 23.44 38.19 3.18
5144 5349 1.915078 ATAGTGCAGGTGACAGGGGC 61.915 60.000 0.00 0.00 0.00 5.80
5145 5350 1.496060 TATAGTGCAGGTGACAGGGG 58.504 55.000 0.00 0.00 0.00 4.79
5146 5351 6.605471 TTATATATAGTGCAGGTGACAGGG 57.395 41.667 0.00 0.00 0.00 4.45
5147 5352 7.896811 TCTTTATATATAGTGCAGGTGACAGG 58.103 38.462 0.00 0.00 0.00 4.00
5148 5353 8.031864 CCTCTTTATATATAGTGCAGGTGACAG 58.968 40.741 0.00 0.00 0.00 3.51
5149 5354 7.509318 ACCTCTTTATATATAGTGCAGGTGACA 59.491 37.037 9.75 0.00 30.35 3.58
5150 5355 7.897864 ACCTCTTTATATATAGTGCAGGTGAC 58.102 38.462 9.75 0.00 30.35 3.67
5152 5357 7.099764 CCACCTCTTTATATATAGTGCAGGTG 58.900 42.308 20.89 20.89 45.39 4.00
5153 5358 6.213600 CCCACCTCTTTATATATAGTGCAGGT 59.786 42.308 6.36 6.36 31.67 4.00
5154 5359 6.352222 CCCCACCTCTTTATATATAGTGCAGG 60.352 46.154 0.00 3.43 0.00 4.85
5155 5360 6.213600 ACCCCACCTCTTTATATATAGTGCAG 59.786 42.308 0.00 1.72 0.00 4.41
5156 5361 6.088819 ACCCCACCTCTTTATATATAGTGCA 58.911 40.000 4.35 0.00 0.00 4.57
5157 5362 6.622427 ACCCCACCTCTTTATATATAGTGC 57.378 41.667 4.35 0.00 0.00 4.40
5158 5363 6.127423 CCGACCCCACCTCTTTATATATAGTG 60.127 46.154 0.85 3.28 0.00 2.74
5159 5364 5.956563 CCGACCCCACCTCTTTATATATAGT 59.043 44.000 0.85 0.00 0.00 2.12
5160 5365 5.163437 GCCGACCCCACCTCTTTATATATAG 60.163 48.000 0.00 0.00 0.00 1.31
5161 5366 4.713321 GCCGACCCCACCTCTTTATATATA 59.287 45.833 0.00 0.00 0.00 0.86
5162 5367 3.518303 GCCGACCCCACCTCTTTATATAT 59.482 47.826 0.00 0.00 0.00 0.86
5163 5368 2.901839 GCCGACCCCACCTCTTTATATA 59.098 50.000 0.00 0.00 0.00 0.86
5164 5369 1.697982 GCCGACCCCACCTCTTTATAT 59.302 52.381 0.00 0.00 0.00 0.86
5165 5370 1.125633 GCCGACCCCACCTCTTTATA 58.874 55.000 0.00 0.00 0.00 0.98
5166 5371 1.912971 GCCGACCCCACCTCTTTAT 59.087 57.895 0.00 0.00 0.00 1.40
5167 5372 2.652095 CGCCGACCCCACCTCTTTA 61.652 63.158 0.00 0.00 0.00 1.85
5168 5373 4.016706 CGCCGACCCCACCTCTTT 62.017 66.667 0.00 0.00 0.00 2.52
5204 5409 3.770424 GGTGTACGGCGTTGCGAC 61.770 66.667 21.24 11.25 0.00 5.19
5207 5412 4.992511 TGGGGTGTACGGCGTTGC 62.993 66.667 21.24 12.77 0.00 4.17
5208 5413 3.045492 GTGGGGTGTACGGCGTTG 61.045 66.667 21.24 0.00 0.00 4.10
5209 5414 4.318949 GGTGGGGTGTACGGCGTT 62.319 66.667 21.24 1.91 0.00 4.84
5210 5415 3.884704 TAGGTGGGGTGTACGGCGT 62.885 63.158 19.64 19.64 0.00 5.68
5211 5416 3.069946 TAGGTGGGGTGTACGGCG 61.070 66.667 4.80 4.80 0.00 6.46
5212 5417 1.619807 ATGTAGGTGGGGTGTACGGC 61.620 60.000 0.00 0.00 0.00 5.68
5213 5418 0.462789 GATGTAGGTGGGGTGTACGG 59.537 60.000 0.00 0.00 0.00 4.02
5214 5419 0.462789 GGATGTAGGTGGGGTGTACG 59.537 60.000 0.00 0.00 0.00 3.67
5215 5420 0.835276 GGGATGTAGGTGGGGTGTAC 59.165 60.000 0.00 0.00 0.00 2.90
5216 5421 0.720232 AGGGATGTAGGTGGGGTGTA 59.280 55.000 0.00 0.00 0.00 2.90
5217 5422 0.720232 TAGGGATGTAGGTGGGGTGT 59.280 55.000 0.00 0.00 0.00 4.16
5218 5423 1.129058 GTAGGGATGTAGGTGGGGTG 58.871 60.000 0.00 0.00 0.00 4.61
5219 5424 0.030399 GGTAGGGATGTAGGTGGGGT 60.030 60.000 0.00 0.00 0.00 4.95
5220 5425 1.119574 CGGTAGGGATGTAGGTGGGG 61.120 65.000 0.00 0.00 0.00 4.96
5221 5426 0.105862 TCGGTAGGGATGTAGGTGGG 60.106 60.000 0.00 0.00 0.00 4.61
5222 5427 2.011122 ATCGGTAGGGATGTAGGTGG 57.989 55.000 0.00 0.00 0.00 4.61
5223 5428 4.021368 CCTAAATCGGTAGGGATGTAGGTG 60.021 50.000 9.65 0.00 44.42 4.00
5224 5429 4.158015 CCTAAATCGGTAGGGATGTAGGT 58.842 47.826 9.65 0.00 44.42 3.08
5225 5430 4.803098 CCTAAATCGGTAGGGATGTAGG 57.197 50.000 4.79 4.79 44.19 3.18
5233 5438 3.133362 TGCACTAACCCTAAATCGGTAGG 59.867 47.826 0.00 1.89 40.48 3.18
5234 5439 4.142004 ACTGCACTAACCCTAAATCGGTAG 60.142 45.833 0.00 0.00 31.69 3.18
5235 5440 3.770933 ACTGCACTAACCCTAAATCGGTA 59.229 43.478 0.00 0.00 31.69 4.02
5236 5441 2.570302 ACTGCACTAACCCTAAATCGGT 59.430 45.455 0.00 0.00 34.07 4.69
5237 5442 2.936498 CACTGCACTAACCCTAAATCGG 59.064 50.000 0.00 0.00 0.00 4.18
5238 5443 2.351726 GCACTGCACTAACCCTAAATCG 59.648 50.000 0.00 0.00 0.00 3.34
5239 5444 3.375299 CAGCACTGCACTAACCCTAAATC 59.625 47.826 3.30 0.00 0.00 2.17
5240 5445 3.009033 TCAGCACTGCACTAACCCTAAAT 59.991 43.478 3.30 0.00 0.00 1.40
5241 5446 2.370519 TCAGCACTGCACTAACCCTAAA 59.629 45.455 3.30 0.00 0.00 1.85
5242 5447 1.974957 TCAGCACTGCACTAACCCTAA 59.025 47.619 3.30 0.00 0.00 2.69
5243 5448 1.275291 GTCAGCACTGCACTAACCCTA 59.725 52.381 3.30 0.00 0.00 3.53
5244 5449 0.035458 GTCAGCACTGCACTAACCCT 59.965 55.000 3.30 0.00 0.00 4.34
5245 5450 2.544726 GTCAGCACTGCACTAACCC 58.455 57.895 3.30 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.