Multiple sequence alignment - TraesCS6D01G146700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G146700 chr6D 100.000 4709 0 0 1 4709 118636883 118632175 0.000000e+00 8696.0
1 TraesCS6D01G146700 chr6A 95.661 2051 82 7 2029 4077 145188770 145190815 0.000000e+00 3288.0
2 TraesCS6D01G146700 chr6A 89.948 965 61 19 646 1607 145187198 145188129 0.000000e+00 1212.0
3 TraesCS6D01G146700 chr6A 88.732 639 61 11 1 634 145186595 145187227 0.000000e+00 771.0
4 TraesCS6D01G146700 chr6A 89.172 628 38 17 4099 4709 145190894 145191508 0.000000e+00 756.0
5 TraesCS6D01G146700 chr6A 100.000 33 0 0 2005 2037 145188585 145188617 1.410000e-05 62.1
6 TraesCS6D01G146700 chr6B 92.672 1965 125 11 2124 4077 207452974 207454930 0.000000e+00 2813.0
7 TraesCS6D01G146700 chr6B 91.167 1619 117 16 5 1620 207451142 207452737 0.000000e+00 2174.0
8 TraesCS6D01G146700 chr6B 90.939 618 34 13 4098 4709 207455002 207455603 0.000000e+00 811.0
9 TraesCS6D01G146700 chr6B 90.141 71 7 0 2036 2106 207452850 207452920 5.020000e-15 93.5
10 TraesCS6D01G146700 chr3D 98.356 365 5 1 1616 1979 383522910 383523274 1.430000e-179 640.0
11 TraesCS6D01G146700 chr4D 97.826 368 7 1 1612 1979 43295261 43294895 6.650000e-178 634.0
12 TraesCS6D01G146700 chr1A 96.953 361 11 0 1619 1979 164463793 164463433 1.450000e-169 606.0
13 TraesCS6D01G146700 chr1A 79.032 124 20 5 196 314 398106681 398106803 3.910000e-11 80.5
14 TraesCS6D01G146700 chr1B 96.944 360 11 0 1620 1979 660462169 660462528 5.210000e-169 604.0
15 TraesCS6D01G146700 chr1B 95.604 364 13 3 1616 1978 373264866 373265227 8.780000e-162 580.0
16 TraesCS6D01G146700 chr5A 96.685 362 11 1 1618 1979 322911332 322911692 6.740000e-168 601.0
17 TraesCS6D01G146700 chr2A 95.890 365 14 1 1616 1979 324607576 324607940 1.460000e-164 590.0
18 TraesCS6D01G146700 chr7A 95.868 363 15 0 1617 1979 585050099 585049737 5.250000e-164 588.0
19 TraesCS6D01G146700 chr7B 95.592 363 16 0 1617 1979 211115819 211116181 2.440000e-162 582.0
20 TraesCS6D01G146700 chr5B 77.295 207 35 11 174 373 382734548 382734347 1.390000e-20 111.0
21 TraesCS6D01G146700 chr3A 78.333 180 24 11 202 371 627918071 627918245 8.340000e-18 102.0
22 TraesCS6D01G146700 chr7D 77.419 186 31 9 174 354 532608326 532608505 3.000000e-17 100.0
23 TraesCS6D01G146700 chr4A 78.235 170 26 10 147 308 556779979 556779813 1.080000e-16 99.0
24 TraesCS6D01G146700 chr3B 77.297 185 30 9 200 377 43185824 43186003 1.080000e-16 99.0
25 TraesCS6D01G146700 chr3B 77.596 183 28 11 200 373 647697042 647697220 1.080000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G146700 chr6D 118632175 118636883 4708 True 8696.000 8696 100.00000 1 4709 1 chr6D.!!$R1 4708
1 TraesCS6D01G146700 chr6A 145186595 145191508 4913 False 1217.820 3288 92.70260 1 4709 5 chr6A.!!$F1 4708
2 TraesCS6D01G146700 chr6B 207451142 207455603 4461 False 1472.875 2813 91.22975 5 4709 4 chr6B.!!$F1 4704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 499 0.584876 ACTACGCGGACTTTTTGTGC 59.415 50.0 12.47 0.0 0.00 4.57 F
1227 1239 0.179145 GGCTCGCGCTACTAACTTCA 60.179 55.0 5.56 0.0 36.09 3.02 F
1842 1855 0.036388 GAAGGCCTCACATGGTCGAA 60.036 55.0 5.23 0.0 36.69 3.71 F
1867 1880 0.036765 ACGCGTTCCTATGCTTCCAA 60.037 50.0 5.58 0.0 33.99 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 1836 0.036388 TTCGACCATGTGAGGCCTTC 60.036 55.0 6.77 4.06 0.00 3.46 R
3103 3377 0.902531 TACTAGGAACCAGGTGCAGC 59.097 55.0 8.11 8.11 0.00 5.25 R
3572 3851 0.249996 CCCCTGCAGCAACCAAAAAG 60.250 55.0 8.66 0.00 0.00 2.27 R
3780 4059 0.924090 GTCTGCCTCAGCGATTTACG 59.076 55.0 0.00 0.00 44.31 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.199531 GGGTTTTCACTGTTTAAAATCGGTTC 59.800 38.462 0.00 0.00 0.00 3.62
68 69 6.976349 GGTTTTCACTGTTTAAAATCGGTTCT 59.024 34.615 0.00 0.00 0.00 3.01
71 72 8.623310 TTTCACTGTTTAAAATCGGTTCTTTC 57.377 30.769 0.00 0.00 0.00 2.62
76 77 5.595133 TGTTTAAAATCGGTTCTTTCTGGGT 59.405 36.000 0.00 0.00 0.00 4.51
79 80 7.820578 TTAAAATCGGTTCTTTCTGGGTTTA 57.179 32.000 0.00 0.00 0.00 2.01
88 90 5.467035 TCTTTCTGGGTTTATTTGGCTTG 57.533 39.130 0.00 0.00 0.00 4.01
106 108 4.027945 GGCTTGTCGTTTTCTTCGTTTTTC 60.028 41.667 0.00 0.00 0.00 2.29
119 121 7.852971 TCTTCGTTTTTCTGGTTCTTTCTTA 57.147 32.000 0.00 0.00 0.00 2.10
484 488 3.062042 ACACTTCCTTTAAACTACGCGG 58.938 45.455 12.47 0.00 0.00 6.46
495 499 0.584876 ACTACGCGGACTTTTTGTGC 59.415 50.000 12.47 0.00 0.00 4.57
896 902 3.133365 AAGCAACTTGGGTCGGCCT 62.133 57.895 5.77 0.00 34.45 5.19
906 912 1.335145 GGGTCGGCCTATTAGTAGCA 58.665 55.000 5.77 0.00 34.45 3.49
963 969 1.000717 ACGGCCCAAACTTCGATTTTG 60.001 47.619 11.37 11.37 34.31 2.44
990 996 1.680651 CTCGTCTGACAGGGCCTCT 60.681 63.158 0.95 0.00 0.00 3.69
1010 1016 0.325577 GCCTGGGGAATGGAATTGGT 60.326 55.000 0.00 0.00 36.07 3.67
1184 1196 2.829003 TACCTCCTCTGCCGCTCG 60.829 66.667 0.00 0.00 0.00 5.03
1215 1227 1.300233 GGAGGTAGATTGGCTCGCG 60.300 63.158 0.00 0.00 0.00 5.87
1217 1229 2.107141 GGTAGATTGGCTCGCGCT 59.893 61.111 5.56 0.00 36.09 5.92
1221 1233 1.266175 GTAGATTGGCTCGCGCTACTA 59.734 52.381 5.56 0.00 36.09 1.82
1224 1236 0.460311 ATTGGCTCGCGCTACTAACT 59.540 50.000 5.56 0.00 36.09 2.24
1227 1239 0.179145 GGCTCGCGCTACTAACTTCA 60.179 55.000 5.56 0.00 36.09 3.02
1286 1298 1.214673 TGGCTCTACGTCCTCACCTAT 59.785 52.381 0.00 0.00 0.00 2.57
1292 1304 2.423898 CGTCCTCACCTATGGCGGT 61.424 63.158 0.00 0.00 37.93 5.68
1399 1411 0.837691 TGCTGGCTCTTCCCTGAGAA 60.838 55.000 0.00 0.00 36.23 2.87
1508 1520 6.607019 TCCACCAAGGTAATTCTACTTGTTT 58.393 36.000 12.72 1.52 39.02 2.83
1510 1522 8.219178 TCCACCAAGGTAATTCTACTTGTTTTA 58.781 33.333 12.72 0.00 39.02 1.52
1609 1622 9.334947 TCTTAATATGCAGTAGTAGTACTTCGT 57.665 33.333 8.40 7.35 37.40 3.85
1639 1652 2.044888 TTCGAGAAAACGCAAATGGC 57.955 45.000 0.00 0.00 39.90 4.40
1640 1653 1.234821 TCGAGAAAACGCAAATGGCT 58.765 45.000 0.00 0.00 41.67 4.75
1641 1654 1.606668 TCGAGAAAACGCAAATGGCTT 59.393 42.857 0.00 0.00 41.67 4.35
1642 1655 2.034053 TCGAGAAAACGCAAATGGCTTT 59.966 40.909 0.00 0.00 41.67 3.51
1643 1656 2.794350 CGAGAAAACGCAAATGGCTTTT 59.206 40.909 0.00 0.00 44.85 2.27
1644 1657 3.361917 CGAGAAAACGCAAATGGCTTTTG 60.362 43.478 18.52 18.52 42.45 2.44
1658 1671 3.524763 GCTTTTGCGTTTCATTGCATT 57.475 38.095 0.00 0.00 41.42 3.56
1659 1672 3.219981 GCTTTTGCGTTTCATTGCATTG 58.780 40.909 2.08 2.08 41.42 2.82
1660 1673 3.801293 CTTTTGCGTTTCATTGCATTGG 58.199 40.909 8.64 0.00 41.42 3.16
1661 1674 2.808523 TTGCGTTTCATTGCATTGGA 57.191 40.000 8.64 0.00 41.42 3.53
1662 1675 2.808523 TGCGTTTCATTGCATTGGAA 57.191 40.000 8.64 3.52 35.90 3.53
1663 1676 3.103447 TGCGTTTCATTGCATTGGAAA 57.897 38.095 3.90 4.19 35.90 3.13
1664 1677 3.058450 TGCGTTTCATTGCATTGGAAAG 58.942 40.909 10.19 10.19 35.90 2.62
1665 1678 3.243670 TGCGTTTCATTGCATTGGAAAGA 60.244 39.130 16.61 0.00 35.90 2.52
1666 1679 3.740321 GCGTTTCATTGCATTGGAAAGAA 59.260 39.130 16.61 4.72 31.75 2.52
1667 1680 4.210955 GCGTTTCATTGCATTGGAAAGAAA 59.789 37.500 16.61 14.63 31.75 2.52
1668 1681 5.106987 GCGTTTCATTGCATTGGAAAGAAAT 60.107 36.000 19.43 0.00 31.75 2.17
1669 1682 6.301108 CGTTTCATTGCATTGGAAAGAAATG 58.699 36.000 19.43 19.39 37.94 2.32
1670 1683 6.604930 GTTTCATTGCATTGGAAAGAAATGG 58.395 36.000 19.43 0.00 35.88 3.16
1671 1684 4.834534 TCATTGCATTGGAAAGAAATGGG 58.165 39.130 8.64 0.00 35.88 4.00
1672 1685 4.531339 TCATTGCATTGGAAAGAAATGGGA 59.469 37.500 8.64 0.00 35.88 4.37
1673 1686 4.970860 TTGCATTGGAAAGAAATGGGAA 57.029 36.364 0.00 0.00 35.88 3.97
1674 1687 5.502089 TTGCATTGGAAAGAAATGGGAAT 57.498 34.783 0.00 0.00 35.88 3.01
1675 1688 5.502089 TGCATTGGAAAGAAATGGGAATT 57.498 34.783 0.00 0.00 35.88 2.17
1676 1689 5.878627 TGCATTGGAAAGAAATGGGAATTT 58.121 33.333 0.00 0.00 35.88 1.82
1677 1690 7.013823 TGCATTGGAAAGAAATGGGAATTTA 57.986 32.000 0.00 0.00 35.88 1.40
1678 1691 6.878389 TGCATTGGAAAGAAATGGGAATTTAC 59.122 34.615 0.00 0.00 35.88 2.01
1679 1692 6.878389 GCATTGGAAAGAAATGGGAATTTACA 59.122 34.615 0.00 0.00 35.88 2.41
1680 1693 7.553760 GCATTGGAAAGAAATGGGAATTTACAT 59.446 33.333 0.00 0.00 35.88 2.29
1681 1694 9.101655 CATTGGAAAGAAATGGGAATTTACATC 57.898 33.333 0.00 0.00 32.46 3.06
1682 1695 7.181569 TGGAAAGAAATGGGAATTTACATCC 57.818 36.000 0.00 0.00 36.16 3.51
1683 1696 6.959366 TGGAAAGAAATGGGAATTTACATCCT 59.041 34.615 0.00 0.00 37.14 3.24
1684 1697 7.124147 TGGAAAGAAATGGGAATTTACATCCTC 59.876 37.037 0.00 0.00 37.14 3.71
1685 1698 7.417911 GGAAAGAAATGGGAATTTACATCCTCC 60.418 40.741 0.00 0.00 37.14 4.30
1686 1699 6.347061 AGAAATGGGAATTTACATCCTCCT 57.653 37.500 0.00 0.00 37.14 3.69
1687 1700 7.465900 AGAAATGGGAATTTACATCCTCCTA 57.534 36.000 0.00 0.00 37.14 2.94
1688 1701 7.521669 AGAAATGGGAATTTACATCCTCCTAG 58.478 38.462 0.00 0.00 37.14 3.02
1689 1702 5.850046 ATGGGAATTTACATCCTCCTAGG 57.150 43.478 0.82 0.82 37.14 3.02
1705 1718 6.210287 CTCCTAGGAGGTAGTTTTACACAG 57.790 45.833 28.68 0.01 38.51 3.66
1706 1719 4.465305 TCCTAGGAGGTAGTTTTACACAGC 59.535 45.833 7.62 0.00 36.53 4.40
1707 1720 3.697619 AGGAGGTAGTTTTACACAGCC 57.302 47.619 0.00 0.00 0.00 4.85
1708 1721 2.976882 AGGAGGTAGTTTTACACAGCCA 59.023 45.455 0.00 0.00 0.00 4.75
1709 1722 3.393278 AGGAGGTAGTTTTACACAGCCAA 59.607 43.478 0.00 0.00 0.00 4.52
1710 1723 3.751698 GGAGGTAGTTTTACACAGCCAAG 59.248 47.826 0.00 0.00 0.00 3.61
1711 1724 4.504340 GGAGGTAGTTTTACACAGCCAAGA 60.504 45.833 0.00 0.00 0.00 3.02
1712 1725 4.642429 AGGTAGTTTTACACAGCCAAGAG 58.358 43.478 0.00 0.00 0.00 2.85
1713 1726 3.751698 GGTAGTTTTACACAGCCAAGAGG 59.248 47.826 0.00 0.00 38.23 3.69
1714 1727 2.863809 AGTTTTACACAGCCAAGAGGG 58.136 47.619 0.00 0.00 40.85 4.30
1723 1736 2.673523 CCAAGAGGGCCTCAGTGG 59.326 66.667 33.86 32.02 33.70 4.00
1724 1737 1.920325 CCAAGAGGGCCTCAGTGGA 60.920 63.158 35.83 0.00 39.05 4.02
1725 1738 1.298014 CAAGAGGGCCTCAGTGGAC 59.702 63.158 33.86 7.21 45.48 4.02
1730 1743 2.592308 GGCCTCAGTGGACATCCC 59.408 66.667 0.00 0.00 45.54 3.85
1731 1744 2.300967 GGCCTCAGTGGACATCCCA 61.301 63.158 0.00 0.00 45.54 4.37
1748 1761 2.639970 CAGGATGGTGGCAAAACGA 58.360 52.632 0.00 0.00 0.00 3.85
1749 1762 0.240945 CAGGATGGTGGCAAAACGAC 59.759 55.000 0.00 0.00 0.00 4.34
1750 1763 0.893727 AGGATGGTGGCAAAACGACC 60.894 55.000 0.00 0.00 46.86 4.79
1751 1764 1.584495 GATGGTGGCAAAACGACCC 59.416 57.895 0.00 0.00 46.17 4.46
1752 1765 0.893727 GATGGTGGCAAAACGACCCT 60.894 55.000 0.00 0.00 46.17 4.34
1753 1766 1.178534 ATGGTGGCAAAACGACCCTG 61.179 55.000 0.00 0.00 46.17 4.45
1754 1767 1.527380 GGTGGCAAAACGACCCTGA 60.527 57.895 0.00 0.00 41.13 3.86
1755 1768 1.515521 GGTGGCAAAACGACCCTGAG 61.516 60.000 0.00 0.00 41.13 3.35
1756 1769 1.896660 TGGCAAAACGACCCTGAGC 60.897 57.895 0.00 0.00 0.00 4.26
1757 1770 2.626780 GGCAAAACGACCCTGAGCC 61.627 63.158 0.00 0.00 0.00 4.70
1758 1771 2.626780 GCAAAACGACCCTGAGCCC 61.627 63.158 0.00 0.00 0.00 5.19
1759 1772 1.073199 CAAAACGACCCTGAGCCCT 59.927 57.895 0.00 0.00 0.00 5.19
1760 1773 0.537371 CAAAACGACCCTGAGCCCTT 60.537 55.000 0.00 0.00 0.00 3.95
1761 1774 0.537371 AAAACGACCCTGAGCCCTTG 60.537 55.000 0.00 0.00 0.00 3.61
1762 1775 1.415672 AAACGACCCTGAGCCCTTGA 61.416 55.000 0.00 0.00 0.00 3.02
1763 1776 1.831652 AACGACCCTGAGCCCTTGAG 61.832 60.000 0.00 0.00 0.00 3.02
1764 1777 2.270527 GACCCTGAGCCCTTGAGC 59.729 66.667 0.00 0.00 0.00 4.26
1773 1786 3.721706 CCCTTGAGCTCCGGCCTT 61.722 66.667 12.15 0.00 39.73 4.35
1774 1787 2.352805 CCTTGAGCTCCGGCCTTT 59.647 61.111 12.15 0.00 39.73 3.11
1775 1788 2.042831 CCTTGAGCTCCGGCCTTTG 61.043 63.158 12.15 0.00 39.73 2.77
1776 1789 2.672996 TTGAGCTCCGGCCTTTGC 60.673 61.111 12.15 1.37 39.73 3.68
1786 1799 2.573340 GCCTTTGCCCAACATCGG 59.427 61.111 0.00 0.00 0.00 4.18
1793 1806 2.978824 CCCAACATCGGGTCTCGT 59.021 61.111 0.00 0.00 41.83 4.18
1794 1807 1.153628 CCCAACATCGGGTCTCGTC 60.154 63.158 0.00 0.00 41.83 4.20
1795 1808 1.605058 CCCAACATCGGGTCTCGTCT 61.605 60.000 0.00 0.00 41.83 4.18
1796 1809 0.246635 CCAACATCGGGTCTCGTCTT 59.753 55.000 0.00 0.00 40.32 3.01
1797 1810 1.337823 CCAACATCGGGTCTCGTCTTT 60.338 52.381 0.00 0.00 40.32 2.52
1798 1811 2.094390 CCAACATCGGGTCTCGTCTTTA 60.094 50.000 0.00 0.00 40.32 1.85
1799 1812 3.581755 CAACATCGGGTCTCGTCTTTAA 58.418 45.455 0.00 0.00 40.32 1.52
1800 1813 4.181578 CAACATCGGGTCTCGTCTTTAAT 58.818 43.478 0.00 0.00 40.32 1.40
1801 1814 4.043037 ACATCGGGTCTCGTCTTTAATC 57.957 45.455 0.00 0.00 40.32 1.75
1802 1815 3.181478 ACATCGGGTCTCGTCTTTAATCC 60.181 47.826 0.00 0.00 40.32 3.01
1803 1816 2.731572 TCGGGTCTCGTCTTTAATCCT 58.268 47.619 0.00 0.00 40.32 3.24
1804 1817 2.426024 TCGGGTCTCGTCTTTAATCCTG 59.574 50.000 0.00 0.00 40.32 3.86
1805 1818 2.165845 CGGGTCTCGTCTTTAATCCTGT 59.834 50.000 0.00 0.00 0.00 4.00
1806 1819 3.734293 CGGGTCTCGTCTTTAATCCTGTC 60.734 52.174 0.00 0.00 0.00 3.51
1807 1820 3.447944 GGGTCTCGTCTTTAATCCTGTCT 59.552 47.826 0.00 0.00 0.00 3.41
1808 1821 4.643784 GGGTCTCGTCTTTAATCCTGTCTA 59.356 45.833 0.00 0.00 0.00 2.59
1809 1822 5.450274 GGGTCTCGTCTTTAATCCTGTCTAC 60.450 48.000 0.00 0.00 0.00 2.59
1810 1823 5.450274 GGTCTCGTCTTTAATCCTGTCTACC 60.450 48.000 0.00 0.00 0.00 3.18
1811 1824 5.125097 GTCTCGTCTTTAATCCTGTCTACCA 59.875 44.000 0.00 0.00 0.00 3.25
1812 1825 5.357314 TCTCGTCTTTAATCCTGTCTACCAG 59.643 44.000 0.00 0.00 41.15 4.00
1813 1826 4.113354 CGTCTTTAATCCTGTCTACCAGC 58.887 47.826 0.00 0.00 40.06 4.85
1814 1827 4.142138 CGTCTTTAATCCTGTCTACCAGCT 60.142 45.833 0.00 0.00 40.06 4.24
1815 1828 5.353111 GTCTTTAATCCTGTCTACCAGCTC 58.647 45.833 0.00 0.00 40.06 4.09
1816 1829 5.023452 TCTTTAATCCTGTCTACCAGCTCA 58.977 41.667 0.00 0.00 40.06 4.26
1817 1830 5.663106 TCTTTAATCCTGTCTACCAGCTCAT 59.337 40.000 0.00 0.00 40.06 2.90
1818 1831 5.957771 TTAATCCTGTCTACCAGCTCATT 57.042 39.130 0.00 0.00 40.06 2.57
1819 1832 4.414337 AATCCTGTCTACCAGCTCATTC 57.586 45.455 0.00 0.00 40.06 2.67
1820 1833 2.820178 TCCTGTCTACCAGCTCATTCA 58.180 47.619 0.00 0.00 40.06 2.57
1821 1834 2.762887 TCCTGTCTACCAGCTCATTCAG 59.237 50.000 0.00 0.00 40.06 3.02
1829 1842 3.105659 GCTCATTCAGCGAAGGCC 58.894 61.111 0.00 0.00 38.76 5.19
1830 1843 1.451028 GCTCATTCAGCGAAGGCCT 60.451 57.895 0.00 0.00 38.76 5.19
1831 1844 1.435408 GCTCATTCAGCGAAGGCCTC 61.435 60.000 5.23 0.00 38.76 4.70
1832 1845 0.107993 CTCATTCAGCGAAGGCCTCA 60.108 55.000 5.23 0.00 41.24 3.86
1833 1846 0.391661 TCATTCAGCGAAGGCCTCAC 60.392 55.000 5.23 2.20 41.24 3.51
1834 1847 0.674581 CATTCAGCGAAGGCCTCACA 60.675 55.000 5.23 0.00 41.24 3.58
1835 1848 0.254178 ATTCAGCGAAGGCCTCACAT 59.746 50.000 5.23 0.00 41.24 3.21
1836 1849 0.674581 TTCAGCGAAGGCCTCACATG 60.675 55.000 5.23 3.40 41.24 3.21
1837 1850 2.110967 CAGCGAAGGCCTCACATGG 61.111 63.158 5.23 0.00 41.24 3.66
1838 1851 2.045926 GCGAAGGCCTCACATGGT 60.046 61.111 5.23 0.00 0.00 3.55
1839 1852 2.109126 GCGAAGGCCTCACATGGTC 61.109 63.158 5.23 0.00 0.00 4.02
1840 1853 1.811266 CGAAGGCCTCACATGGTCG 60.811 63.158 5.23 5.94 36.69 4.79
1841 1854 1.596934 GAAGGCCTCACATGGTCGA 59.403 57.895 5.23 0.00 36.69 4.20
1842 1855 0.036388 GAAGGCCTCACATGGTCGAA 60.036 55.000 5.23 0.00 36.69 3.71
1843 1856 0.400213 AAGGCCTCACATGGTCGAAA 59.600 50.000 5.23 0.00 36.69 3.46
1844 1857 0.400213 AGGCCTCACATGGTCGAAAA 59.600 50.000 0.00 0.00 36.69 2.29
1845 1858 0.521735 GGCCTCACATGGTCGAAAAC 59.478 55.000 0.00 0.00 0.00 2.43
1846 1859 1.234821 GCCTCACATGGTCGAAAACA 58.765 50.000 0.00 0.00 0.00 2.83
1847 1860 1.069227 GCCTCACATGGTCGAAAACAC 60.069 52.381 0.00 0.00 0.00 3.32
1848 1861 2.217750 CCTCACATGGTCGAAAACACA 58.782 47.619 0.00 0.00 0.00 3.72
1849 1862 2.032030 CCTCACATGGTCGAAAACACAC 60.032 50.000 0.00 0.00 0.00 3.82
1850 1863 1.595328 TCACATGGTCGAAAACACACG 59.405 47.619 0.00 0.00 0.00 4.49
1851 1864 0.306533 ACATGGTCGAAAACACACGC 59.693 50.000 0.00 0.00 0.00 5.34
1852 1865 0.721155 CATGGTCGAAAACACACGCG 60.721 55.000 3.53 3.53 0.00 6.01
1853 1866 1.155424 ATGGTCGAAAACACACGCGT 61.155 50.000 5.58 5.58 0.00 6.01
1854 1867 1.349282 GGTCGAAAACACACGCGTT 59.651 52.632 10.22 0.00 0.00 4.84
1855 1868 0.652465 GGTCGAAAACACACGCGTTC 60.652 55.000 10.22 1.85 0.00 3.95
1856 1869 0.652465 GTCGAAAACACACGCGTTCC 60.652 55.000 10.22 0.00 0.00 3.62
1857 1870 0.806884 TCGAAAACACACGCGTTCCT 60.807 50.000 10.22 0.00 0.00 3.36
1858 1871 0.854062 CGAAAACACACGCGTTCCTA 59.146 50.000 10.22 0.00 0.00 2.94
1859 1872 1.458064 CGAAAACACACGCGTTCCTAT 59.542 47.619 10.22 0.00 0.00 2.57
1860 1873 2.720590 CGAAAACACACGCGTTCCTATG 60.721 50.000 10.22 5.81 0.00 2.23
1861 1874 0.515564 AAACACACGCGTTCCTATGC 59.484 50.000 10.22 0.00 0.00 3.14
1862 1875 0.320421 AACACACGCGTTCCTATGCT 60.320 50.000 10.22 0.00 33.99 3.79
1863 1876 0.320421 ACACACGCGTTCCTATGCTT 60.320 50.000 10.22 0.00 33.99 3.91
1864 1877 0.370273 CACACGCGTTCCTATGCTTC 59.630 55.000 10.22 0.00 33.99 3.86
1865 1878 0.739813 ACACGCGTTCCTATGCTTCC 60.740 55.000 10.22 0.00 33.99 3.46
1866 1879 0.739462 CACGCGTTCCTATGCTTCCA 60.739 55.000 10.22 0.00 33.99 3.53
1867 1880 0.036765 ACGCGTTCCTATGCTTCCAA 60.037 50.000 5.58 0.00 33.99 3.53
1868 1881 1.083489 CGCGTTCCTATGCTTCCAAA 58.917 50.000 0.00 0.00 33.99 3.28
1869 1882 1.202031 CGCGTTCCTATGCTTCCAAAC 60.202 52.381 0.00 0.00 33.99 2.93
1870 1883 1.132453 GCGTTCCTATGCTTCCAAACC 59.868 52.381 0.00 0.00 33.36 3.27
1871 1884 2.432444 CGTTCCTATGCTTCCAAACCA 58.568 47.619 0.00 0.00 0.00 3.67
1872 1885 3.016736 CGTTCCTATGCTTCCAAACCAT 58.983 45.455 0.00 0.00 0.00 3.55
1873 1886 3.065371 CGTTCCTATGCTTCCAAACCATC 59.935 47.826 0.00 0.00 0.00 3.51
1874 1887 3.297134 TCCTATGCTTCCAAACCATCC 57.703 47.619 0.00 0.00 0.00 3.51
1875 1888 2.580322 TCCTATGCTTCCAAACCATCCA 59.420 45.455 0.00 0.00 0.00 3.41
1876 1889 2.689983 CCTATGCTTCCAAACCATCCAC 59.310 50.000 0.00 0.00 0.00 4.02
1877 1890 1.176527 ATGCTTCCAAACCATCCACG 58.823 50.000 0.00 0.00 0.00 4.94
1878 1891 0.893270 TGCTTCCAAACCATCCACGG 60.893 55.000 0.00 0.00 0.00 4.94
1879 1892 0.893727 GCTTCCAAACCATCCACGGT 60.894 55.000 0.00 0.00 42.71 4.83
1880 1893 1.612199 GCTTCCAAACCATCCACGGTA 60.612 52.381 0.00 0.00 38.76 4.02
1881 1894 2.081462 CTTCCAAACCATCCACGGTAC 58.919 52.381 0.00 0.00 38.76 3.34
1882 1895 0.325602 TCCAAACCATCCACGGTACC 59.674 55.000 0.16 0.16 38.76 3.34
1883 1896 0.037017 CCAAACCATCCACGGTACCA 59.963 55.000 13.54 0.00 38.76 3.25
1884 1897 1.545875 CCAAACCATCCACGGTACCAA 60.546 52.381 13.54 0.00 38.76 3.67
1885 1898 1.810151 CAAACCATCCACGGTACCAAG 59.190 52.381 13.54 2.92 38.76 3.61
1886 1899 1.354101 AACCATCCACGGTACCAAGA 58.646 50.000 13.54 5.31 38.76 3.02
1887 1900 0.902531 ACCATCCACGGTACCAAGAG 59.097 55.000 13.54 0.00 37.57 2.85
1888 1901 0.462047 CCATCCACGGTACCAAGAGC 60.462 60.000 13.54 0.00 0.00 4.09
1889 1902 0.806102 CATCCACGGTACCAAGAGCG 60.806 60.000 13.54 0.00 45.55 5.03
1890 1903 2.573609 ATCCACGGTACCAAGAGCGC 62.574 60.000 13.54 0.00 43.96 5.92
1891 1904 2.813908 CACGGTACCAAGAGCGCC 60.814 66.667 13.54 0.00 43.96 6.53
1892 1905 3.307906 ACGGTACCAAGAGCGCCA 61.308 61.111 13.54 0.00 43.96 5.69
1893 1906 2.813908 CGGTACCAAGAGCGCCAC 60.814 66.667 13.54 0.00 33.05 5.01
1894 1907 2.345991 GGTACCAAGAGCGCCACA 59.654 61.111 7.15 0.00 0.00 4.17
1895 1908 1.741770 GGTACCAAGAGCGCCACAG 60.742 63.158 7.15 0.00 0.00 3.66
1896 1909 1.292223 GTACCAAGAGCGCCACAGA 59.708 57.895 2.29 0.00 0.00 3.41
1897 1910 0.108138 GTACCAAGAGCGCCACAGAT 60.108 55.000 2.29 0.00 0.00 2.90
1898 1911 0.613260 TACCAAGAGCGCCACAGATT 59.387 50.000 2.29 0.00 0.00 2.40
1899 1912 0.250901 ACCAAGAGCGCCACAGATTT 60.251 50.000 2.29 0.00 0.00 2.17
1900 1913 0.169672 CCAAGAGCGCCACAGATTTG 59.830 55.000 2.29 0.00 0.00 2.32
1901 1914 1.159285 CAAGAGCGCCACAGATTTGA 58.841 50.000 2.29 0.00 0.00 2.69
1902 1915 1.536766 CAAGAGCGCCACAGATTTGAA 59.463 47.619 2.29 0.00 0.00 2.69
1903 1916 1.160137 AGAGCGCCACAGATTTGAAC 58.840 50.000 2.29 0.00 0.00 3.18
1904 1917 0.179215 GAGCGCCACAGATTTGAACG 60.179 55.000 2.29 0.00 0.00 3.95
1905 1918 1.797537 GCGCCACAGATTTGAACGC 60.798 57.895 0.00 6.56 36.72 4.84
1906 1919 1.154225 CGCCACAGATTTGAACGCC 60.154 57.895 0.00 0.00 0.00 5.68
1907 1920 1.577328 CGCCACAGATTTGAACGCCT 61.577 55.000 0.00 0.00 0.00 5.52
1908 1921 0.598065 GCCACAGATTTGAACGCCTT 59.402 50.000 0.00 0.00 0.00 4.35
1909 1922 1.666888 GCCACAGATTTGAACGCCTTG 60.667 52.381 0.00 0.00 0.00 3.61
1910 1923 1.666888 CCACAGATTTGAACGCCTTGC 60.667 52.381 0.00 0.00 0.00 4.01
1922 1935 4.093952 CCTTGCGAAGTGCTGGCG 62.094 66.667 0.00 0.00 46.63 5.69
1923 1936 4.093952 CTTGCGAAGTGCTGGCGG 62.094 66.667 0.00 0.00 46.63 6.13
1924 1937 4.927782 TTGCGAAGTGCTGGCGGT 62.928 61.111 0.00 0.00 46.63 5.68
1927 1940 3.414700 CGAAGTGCTGGCGGTGTC 61.415 66.667 0.00 0.00 0.00 3.67
1928 1941 2.280797 GAAGTGCTGGCGGTGTCA 60.281 61.111 0.00 0.00 0.00 3.58
1929 1942 1.891919 GAAGTGCTGGCGGTGTCAA 60.892 57.895 0.00 0.00 0.00 3.18
1930 1943 1.228245 AAGTGCTGGCGGTGTCAAT 60.228 52.632 0.00 0.00 0.00 2.57
1931 1944 0.823356 AAGTGCTGGCGGTGTCAATT 60.823 50.000 0.00 0.00 0.00 2.32
1932 1945 1.210155 GTGCTGGCGGTGTCAATTC 59.790 57.895 0.00 0.00 0.00 2.17
1933 1946 1.971167 TGCTGGCGGTGTCAATTCC 60.971 57.895 0.00 0.00 0.00 3.01
1934 1947 1.675641 GCTGGCGGTGTCAATTCCT 60.676 57.895 0.00 0.00 0.00 3.36
1935 1948 1.244019 GCTGGCGGTGTCAATTCCTT 61.244 55.000 0.00 0.00 0.00 3.36
1936 1949 1.247567 CTGGCGGTGTCAATTCCTTT 58.752 50.000 0.00 0.00 0.00 3.11
1937 1950 0.958091 TGGCGGTGTCAATTCCTTTG 59.042 50.000 0.00 0.00 36.61 2.77
1938 1951 0.388520 GGCGGTGTCAATTCCTTTGC 60.389 55.000 0.00 0.00 35.16 3.68
1939 1952 0.729140 GCGGTGTCAATTCCTTTGCG 60.729 55.000 0.00 0.00 35.16 4.85
1940 1953 0.729140 CGGTGTCAATTCCTTTGCGC 60.729 55.000 0.00 0.00 35.16 6.09
1941 1954 0.729140 GGTGTCAATTCCTTTGCGCG 60.729 55.000 0.00 0.00 35.16 6.86
1942 1955 1.081509 TGTCAATTCCTTTGCGCGC 60.082 52.632 27.26 27.26 35.16 6.86
1943 1956 1.081509 GTCAATTCCTTTGCGCGCA 60.082 52.632 33.09 33.09 35.16 6.09
1944 1957 1.067199 GTCAATTCCTTTGCGCGCAG 61.067 55.000 34.25 23.21 35.16 5.18
1957 1970 2.802792 CGCAGCCACCAATCCATG 59.197 61.111 0.00 0.00 0.00 3.66
1958 1971 1.750018 CGCAGCCACCAATCCATGA 60.750 57.895 0.00 0.00 0.00 3.07
1959 1972 1.721664 CGCAGCCACCAATCCATGAG 61.722 60.000 0.00 0.00 0.00 2.90
1960 1973 2.012902 GCAGCCACCAATCCATGAGC 62.013 60.000 0.00 0.00 0.00 4.26
1961 1974 1.452651 AGCCACCAATCCATGAGCG 60.453 57.895 0.00 0.00 0.00 5.03
1962 1975 1.451927 GCCACCAATCCATGAGCGA 60.452 57.895 0.00 0.00 0.00 4.93
1963 1976 1.442526 GCCACCAATCCATGAGCGAG 61.443 60.000 0.00 0.00 0.00 5.03
1964 1977 1.442526 CCACCAATCCATGAGCGAGC 61.443 60.000 0.00 0.00 0.00 5.03
1965 1978 1.153086 ACCAATCCATGAGCGAGCC 60.153 57.895 0.00 0.00 0.00 4.70
1966 1979 2.249535 CCAATCCATGAGCGAGCCG 61.250 63.158 0.00 0.00 0.00 5.52
1967 1980 1.522355 CAATCCATGAGCGAGCCGT 60.522 57.895 0.00 0.00 0.00 5.68
1968 1981 1.227380 AATCCATGAGCGAGCCGTC 60.227 57.895 0.00 0.00 0.00 4.79
1995 2008 0.322187 GGCTTCCCCGCAAAGAAGTA 60.322 55.000 8.03 0.00 41.29 2.24
2042 2274 8.903820 AGTTATTTATCAATGTAGGAAACTGGC 58.096 33.333 0.00 0.00 43.88 4.85
2053 2285 4.699925 AGGAAACTGGCTACTGTTTACA 57.300 40.909 12.78 0.00 46.19 2.41
2394 2662 3.054139 TGCTTGCAGTTATTCCAGATCCT 60.054 43.478 0.00 0.00 0.00 3.24
2523 2791 5.397360 AGTGGAGAAAAATGGGACTTCAAT 58.603 37.500 0.00 0.00 0.00 2.57
2607 2875 2.952310 GTGAACTTGTGCCTTTCTCCTT 59.048 45.455 0.00 0.00 0.00 3.36
2791 3060 7.558444 GGTTGTATTATTGGGGTAAGTTCATCA 59.442 37.037 0.00 0.00 0.00 3.07
2813 3082 7.754851 TCAGGCAGTGATACGTATATTTCTA 57.245 36.000 8.34 0.00 0.00 2.10
2816 3085 9.424319 CAGGCAGTGATACGTATATTTCTATTT 57.576 33.333 8.34 0.00 0.00 1.40
2950 3224 9.979270 GTACAATTATGCATATATCAGTTCAGC 57.021 33.333 7.36 0.00 0.00 4.26
3103 3377 5.940192 TTGGCAATTGTTACACTGTAGAG 57.060 39.130 7.40 0.00 0.00 2.43
3123 3397 1.134670 GCTGCACCTGGTTCCTAGTAG 60.135 57.143 0.00 0.00 0.00 2.57
3141 3415 5.091261 AGTAGGTCAAGTCAAGGCTATTG 57.909 43.478 0.00 0.00 0.00 1.90
3300 3578 3.366679 CCTGAATGTGAACCATGTTGCTC 60.367 47.826 0.00 0.00 32.82 4.26
3385 3664 4.006780 ACATGATGTCTGTACAACTGCA 57.993 40.909 0.00 0.00 39.58 4.41
3398 3677 1.566298 AACTGCATCCTCCCACCTCC 61.566 60.000 0.00 0.00 0.00 4.30
3477 3756 1.679977 GCCTCTTGCAGCCCATTCA 60.680 57.895 0.00 0.00 40.77 2.57
3484 3763 2.117156 GCAGCCCATTCAGTCGCAT 61.117 57.895 0.00 0.00 0.00 4.73
3503 3782 1.377333 GGTTAGCTGCCGCTCCTTT 60.377 57.895 5.68 0.00 45.15 3.11
3516 3795 3.118592 CCGCTCCTTTCTTCCTGAAGTAT 60.119 47.826 6.78 0.00 39.38 2.12
3569 3848 2.347568 CGACAGAACACGTGACAACATG 60.348 50.000 25.01 13.44 38.80 3.21
3577 3856 3.502191 ACGTGACAACATGTGCTTTTT 57.498 38.095 0.00 0.00 43.52 1.94
3648 3927 3.021695 TGAGTCCGTATACACCTTCCTG 58.978 50.000 3.32 0.00 0.00 3.86
3688 3967 1.595929 GAACCGTTCCTTGGCGTCA 60.596 57.895 0.00 0.00 0.00 4.35
3756 4035 2.567169 AGAGTCACCGGATCATGAAACA 59.433 45.455 9.46 0.00 0.00 2.83
3780 4059 2.555757 GGTGCAGATGAATAATGGAGCC 59.444 50.000 0.00 0.00 0.00 4.70
3810 4089 1.355066 GAGGCAGACACAGCTAACGC 61.355 60.000 0.00 0.00 0.00 4.84
3861 4140 1.322538 GGGCCAGGCTGTGTAAATGG 61.323 60.000 12.43 0.00 0.00 3.16
3863 4142 1.256812 GCCAGGCTGTGTAAATGGTT 58.743 50.000 14.43 0.00 33.42 3.67
3980 4259 2.902705 TACACTCTTTCTTGGCGTGT 57.097 45.000 0.00 0.00 41.26 4.49
4032 4311 7.878477 AAATCATAACTGCAAAGTTGTCATG 57.122 32.000 1.78 0.00 33.59 3.07
4040 4319 3.890756 TGCAAAGTTGTCATGGACTGAAT 59.109 39.130 0.00 0.00 35.07 2.57
4043 4322 5.507817 GCAAAGTTGTCATGGACTGAATTCA 60.508 40.000 8.12 8.12 35.07 2.57
4045 4324 5.954296 AGTTGTCATGGACTGAATTCAAG 57.046 39.130 9.88 6.49 35.07 3.02
4055 4334 3.614092 ACTGAATTCAAGGCGATGTGAT 58.386 40.909 9.88 0.00 0.00 3.06
4062 4342 4.678509 TCAAGGCGATGTGATTACAAAC 57.321 40.909 0.00 0.00 40.84 2.93
4067 4347 4.699735 AGGCGATGTGATTACAAACATGAA 59.300 37.500 0.00 0.00 40.84 2.57
4077 4357 5.720371 TTACAAACATGAACTTGGATGGG 57.280 39.130 0.00 0.00 0.00 4.00
4080 4360 1.843368 ACATGAACTTGGATGGGCTG 58.157 50.000 0.00 0.00 0.00 4.85
4082 4362 0.040058 ATGAACTTGGATGGGCTGCA 59.960 50.000 0.50 0.00 0.00 4.41
4083 4363 0.040058 TGAACTTGGATGGGCTGCAT 59.960 50.000 0.50 0.00 0.00 3.96
4084 4364 0.458669 GAACTTGGATGGGCTGCATG 59.541 55.000 0.50 0.00 0.00 4.06
4086 4366 2.037527 TTGGATGGGCTGCATGCA 59.962 55.556 21.29 21.29 45.15 3.96
4087 4367 1.382009 TTGGATGGGCTGCATGCAT 60.382 52.632 22.97 5.46 45.15 3.96
4088 4368 1.396607 TTGGATGGGCTGCATGCATC 61.397 55.000 22.97 17.75 45.15 3.91
4089 4369 2.643272 GATGGGCTGCATGCATCG 59.357 61.111 22.97 12.00 45.15 3.84
4090 4370 3.553437 GATGGGCTGCATGCATCGC 62.553 63.158 26.27 26.27 45.15 4.58
4094 4374 4.266070 GCTGCATGCATCGCCCAG 62.266 66.667 22.97 8.76 42.31 4.45
4096 4376 1.897137 CTGCATGCATCGCCCAGAT 60.897 57.895 22.97 0.00 41.01 2.90
4133 4481 2.060383 CGGGCCATCAGTCCAGAGA 61.060 63.158 4.39 0.00 0.00 3.10
4136 4484 1.407989 GGGCCATCAGTCCAGAGAAAG 60.408 57.143 4.39 0.00 0.00 2.62
4137 4485 1.407989 GGCCATCAGTCCAGAGAAAGG 60.408 57.143 0.00 0.00 0.00 3.11
4149 4497 0.692756 GAGAAAGGGAGGGAGGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
4223 4572 4.026804 GTCAAAGCGACGGTACAATGATAG 60.027 45.833 0.00 0.00 34.19 2.08
4251 4600 0.919289 TGGGGGTTCTGAATCCTCCC 60.919 60.000 16.82 12.45 43.38 4.30
4321 4672 1.134965 CCTCACTCAAGTCCGTCCATC 60.135 57.143 0.00 0.00 0.00 3.51
4428 4786 1.301716 GCCTTTCTCTGCACCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
4435 4793 1.269723 TCTCTGCACCGTCACTAACTG 59.730 52.381 0.00 0.00 0.00 3.16
4443 4801 1.269723 CCGTCACTAACTGAGCAGTGA 59.730 52.381 12.02 12.02 46.75 3.41
4452 4810 4.691860 AACTGAGCAGTGACATTATTGC 57.308 40.909 3.57 0.00 41.58 3.56
4456 4814 3.273434 GAGCAGTGACATTATTGCCTCA 58.727 45.455 0.00 0.00 37.26 3.86
4457 4815 3.689347 AGCAGTGACATTATTGCCTCAA 58.311 40.909 0.00 0.00 37.26 3.02
4458 4816 4.081406 AGCAGTGACATTATTGCCTCAAA 58.919 39.130 0.00 0.00 37.26 2.69
4459 4817 4.082571 AGCAGTGACATTATTGCCTCAAAC 60.083 41.667 0.00 0.00 37.26 2.93
4460 4818 4.321156 GCAGTGACATTATTGCCTCAAACA 60.321 41.667 0.00 0.00 0.00 2.83
4525 4888 2.162716 GCCTGAGGCGTAGTTGTTG 58.837 57.895 8.16 0.00 39.62 3.33
4528 4891 1.270094 CCTGAGGCGTAGTTGTTGTGA 60.270 52.381 0.00 0.00 0.00 3.58
4529 4892 2.612972 CCTGAGGCGTAGTTGTTGTGAT 60.613 50.000 0.00 0.00 0.00 3.06
4530 4893 3.067106 CTGAGGCGTAGTTGTTGTGATT 58.933 45.455 0.00 0.00 0.00 2.57
4532 4895 3.496884 TGAGGCGTAGTTGTTGTGATTTC 59.503 43.478 0.00 0.00 0.00 2.17
4533 4896 3.472652 AGGCGTAGTTGTTGTGATTTCA 58.527 40.909 0.00 0.00 0.00 2.69
4534 4897 4.072131 AGGCGTAGTTGTTGTGATTTCAT 58.928 39.130 0.00 0.00 0.00 2.57
4535 4898 4.518970 AGGCGTAGTTGTTGTGATTTCATT 59.481 37.500 0.00 0.00 0.00 2.57
4627 4991 2.502130 TGTGAGTTTGTGTAGGTGGTGA 59.498 45.455 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.213891 ACAAGCCAAATAAACCCAGAAAG 57.786 39.130 0.00 0.00 0.00 2.62
68 69 4.261825 CGACAAGCCAAATAAACCCAGAAA 60.262 41.667 0.00 0.00 0.00 2.52
71 72 2.556622 ACGACAAGCCAAATAAACCCAG 59.443 45.455 0.00 0.00 0.00 4.45
76 77 5.683743 CGAAGAAAACGACAAGCCAAATAAA 59.316 36.000 0.00 0.00 0.00 1.40
79 80 3.066203 ACGAAGAAAACGACAAGCCAAAT 59.934 39.130 0.00 0.00 34.70 2.32
88 90 4.655027 ACCAGAAAAACGAAGAAAACGAC 58.345 39.130 0.00 0.00 34.70 4.34
455 459 6.277918 AGTTTAAAGGAAGTGTTTCGTACG 57.722 37.500 9.53 9.53 33.98 3.67
517 521 6.976934 ATCACACATTTATATTCCCAACCC 57.023 37.500 0.00 0.00 0.00 4.11
673 678 6.591062 GCATTCCAGAAAAGATTGCAACATTA 59.409 34.615 0.00 0.00 39.34 1.90
679 684 5.653330 TGATAGCATTCCAGAAAAGATTGCA 59.347 36.000 9.49 0.00 41.06 4.08
685 690 8.767478 AAAATGTTGATAGCATTCCAGAAAAG 57.233 30.769 0.00 0.00 35.73 2.27
690 695 7.092137 TCAGAAAATGTTGATAGCATTCCAG 57.908 36.000 0.00 0.00 35.73 3.86
810 815 7.667984 TTTCGTATTTTTGAAAACGTTCTCC 57.332 32.000 0.00 0.00 34.60 3.71
874 880 0.955919 CCGACCCAAGTTGCTTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
896 902 2.368875 GCCTCAGGCCTTGCTACTAATA 59.631 50.000 3.37 0.00 44.06 0.98
963 969 0.387929 TGTCAGACGAGTCAACCCAC 59.612 55.000 5.99 0.00 0.00 4.61
990 996 0.325484 CCAATTCCATTCCCCAGGCA 60.325 55.000 0.00 0.00 0.00 4.75
1184 1196 0.464735 TACCTCCTCTCTGAGCGAGC 60.465 60.000 13.21 0.00 39.70 5.03
1190 1202 2.246067 AGCCAATCTACCTCCTCTCTGA 59.754 50.000 0.00 0.00 0.00 3.27
1215 1227 2.678336 GCCACATGGTGAAGTTAGTAGC 59.322 50.000 0.00 0.00 35.23 3.58
1217 1229 3.307410 CCTGCCACATGGTGAAGTTAGTA 60.307 47.826 0.00 0.00 35.23 1.82
1221 1233 0.185901 ACCTGCCACATGGTGAAGTT 59.814 50.000 0.00 0.00 35.23 2.66
1227 1239 4.684134 GCCCACCTGCCACATGGT 62.684 66.667 0.00 0.00 37.57 3.55
1286 1298 4.451150 GAGACGATGCCACCGCCA 62.451 66.667 0.00 0.00 0.00 5.69
1399 1411 0.806868 CCTGCATGAACAGAACGCAT 59.193 50.000 0.00 0.00 40.25 4.73
1508 1520 6.826231 TCAGTTCAGTTGACAACCTGAAATAA 59.174 34.615 23.11 13.28 37.53 1.40
1510 1522 5.192927 TCAGTTCAGTTGACAACCTGAAAT 58.807 37.500 23.11 20.99 37.53 2.17
1619 1632 2.389998 GCCATTTGCGTTTTCTCGAAA 58.610 42.857 0.00 0.00 0.00 3.46
1620 1633 2.044888 GCCATTTGCGTTTTCTCGAA 57.955 45.000 0.00 0.00 0.00 3.71
1621 1634 3.765349 GCCATTTGCGTTTTCTCGA 57.235 47.368 0.00 0.00 0.00 4.04
1633 1646 3.303924 GCAATGAAACGCAAAAGCCATTT 60.304 39.130 0.00 0.00 0.00 2.32
1634 1647 2.223845 GCAATGAAACGCAAAAGCCATT 59.776 40.909 0.00 0.00 0.00 3.16
1635 1648 1.799994 GCAATGAAACGCAAAAGCCAT 59.200 42.857 0.00 0.00 0.00 4.40
1636 1649 1.216122 GCAATGAAACGCAAAAGCCA 58.784 45.000 0.00 0.00 0.00 4.75
1637 1650 1.216122 TGCAATGAAACGCAAAAGCC 58.784 45.000 0.00 0.00 34.59 4.35
1638 1651 3.219981 CAATGCAATGAAACGCAAAAGC 58.780 40.909 0.00 0.00 42.37 3.51
1639 1652 3.493877 TCCAATGCAATGAAACGCAAAAG 59.506 39.130 2.50 0.00 42.37 2.27
1640 1653 3.461061 TCCAATGCAATGAAACGCAAAA 58.539 36.364 2.50 0.00 42.37 2.44
1641 1654 3.103447 TCCAATGCAATGAAACGCAAA 57.897 38.095 2.50 0.00 42.37 3.68
1642 1655 2.808523 TCCAATGCAATGAAACGCAA 57.191 40.000 2.50 0.00 42.37 4.85
1643 1656 2.808523 TTCCAATGCAATGAAACGCA 57.191 40.000 2.50 0.00 43.45 5.24
1644 1657 3.316283 TCTTTCCAATGCAATGAAACGC 58.684 40.909 2.50 0.00 0.00 4.84
1645 1658 5.903764 TTTCTTTCCAATGCAATGAAACG 57.096 34.783 2.50 0.00 0.00 3.60
1646 1659 6.348704 CCCATTTCTTTCCAATGCAATGAAAC 60.349 38.462 2.50 0.00 32.67 2.78
1647 1660 5.706369 CCCATTTCTTTCCAATGCAATGAAA 59.294 36.000 2.50 5.96 33.73 2.69
1648 1661 5.012871 TCCCATTTCTTTCCAATGCAATGAA 59.987 36.000 2.50 0.00 31.26 2.57
1649 1662 4.531339 TCCCATTTCTTTCCAATGCAATGA 59.469 37.500 2.50 0.00 31.26 2.57
1650 1663 4.834534 TCCCATTTCTTTCCAATGCAATG 58.165 39.130 0.00 0.00 31.26 2.82
1651 1664 5.502089 TTCCCATTTCTTTCCAATGCAAT 57.498 34.783 0.00 0.00 31.26 3.56
1652 1665 4.970860 TTCCCATTTCTTTCCAATGCAA 57.029 36.364 0.00 0.00 31.26 4.08
1653 1666 5.502089 AATTCCCATTTCTTTCCAATGCA 57.498 34.783 0.00 0.00 31.26 3.96
1654 1667 6.878389 TGTAAATTCCCATTTCTTTCCAATGC 59.122 34.615 0.00 0.00 34.29 3.56
1655 1668 9.101655 GATGTAAATTCCCATTTCTTTCCAATG 57.898 33.333 0.00 0.00 34.29 2.82
1656 1669 8.267183 GGATGTAAATTCCCATTTCTTTCCAAT 58.733 33.333 0.00 0.00 34.29 3.16
1657 1670 7.457535 AGGATGTAAATTCCCATTTCTTTCCAA 59.542 33.333 0.00 0.00 34.29 3.53
1658 1671 6.959366 AGGATGTAAATTCCCATTTCTTTCCA 59.041 34.615 0.00 0.00 34.29 3.53
1659 1672 7.417911 GGAGGATGTAAATTCCCATTTCTTTCC 60.418 40.741 0.00 0.00 34.29 3.13
1660 1673 7.343057 AGGAGGATGTAAATTCCCATTTCTTTC 59.657 37.037 0.00 0.00 34.29 2.62
1661 1674 7.191918 AGGAGGATGTAAATTCCCATTTCTTT 58.808 34.615 0.00 0.00 34.29 2.52
1662 1675 6.745857 AGGAGGATGTAAATTCCCATTTCTT 58.254 36.000 0.00 0.00 34.29 2.52
1663 1676 6.347061 AGGAGGATGTAAATTCCCATTTCT 57.653 37.500 0.00 0.00 34.29 2.52
1664 1677 6.717084 CCTAGGAGGATGTAAATTCCCATTTC 59.283 42.308 1.05 0.00 37.67 2.17
1665 1678 6.392842 TCCTAGGAGGATGTAAATTCCCATTT 59.607 38.462 7.62 0.00 40.06 2.32
1666 1679 5.917087 TCCTAGGAGGATGTAAATTCCCATT 59.083 40.000 7.62 0.00 40.06 3.16
1667 1680 5.486332 TCCTAGGAGGATGTAAATTCCCAT 58.514 41.667 7.62 0.00 40.06 4.00
1668 1681 4.903149 TCCTAGGAGGATGTAAATTCCCA 58.097 43.478 7.62 0.00 40.06 4.37
1669 1682 5.491323 CTCCTAGGAGGATGTAAATTCCC 57.509 47.826 28.68 0.00 44.81 3.97
1682 1695 5.394333 GCTGTGTAAAACTACCTCCTAGGAG 60.394 48.000 29.27 29.27 37.67 3.69
1683 1696 4.465305 GCTGTGTAAAACTACCTCCTAGGA 59.535 45.833 11.98 11.98 37.67 2.94
1684 1697 4.382793 GGCTGTGTAAAACTACCTCCTAGG 60.383 50.000 0.82 0.82 42.49 3.02
1685 1698 4.222145 TGGCTGTGTAAAACTACCTCCTAG 59.778 45.833 0.00 0.00 0.00 3.02
1686 1699 4.161876 TGGCTGTGTAAAACTACCTCCTA 58.838 43.478 0.00 0.00 0.00 2.94
1687 1700 2.976882 TGGCTGTGTAAAACTACCTCCT 59.023 45.455 0.00 0.00 0.00 3.69
1688 1701 3.412237 TGGCTGTGTAAAACTACCTCC 57.588 47.619 0.00 0.00 0.00 4.30
1689 1702 4.638304 TCTTGGCTGTGTAAAACTACCTC 58.362 43.478 0.00 0.00 0.00 3.85
1690 1703 4.505039 CCTCTTGGCTGTGTAAAACTACCT 60.505 45.833 0.00 0.00 0.00 3.08
1691 1704 3.751698 CCTCTTGGCTGTGTAAAACTACC 59.248 47.826 0.00 0.00 0.00 3.18
1692 1705 3.751698 CCCTCTTGGCTGTGTAAAACTAC 59.248 47.826 0.00 0.00 0.00 2.73
1693 1706 4.015872 CCCTCTTGGCTGTGTAAAACTA 57.984 45.455 0.00 0.00 0.00 2.24
1694 1707 2.863809 CCCTCTTGGCTGTGTAAAACT 58.136 47.619 0.00 0.00 0.00 2.66
1706 1719 1.920325 TCCACTGAGGCCCTCTTGG 60.920 63.158 20.40 20.40 36.41 3.61
1707 1720 1.298014 GTCCACTGAGGCCCTCTTG 59.702 63.158 12.94 8.99 37.29 3.02
1708 1721 0.548682 ATGTCCACTGAGGCCCTCTT 60.549 55.000 12.94 0.00 37.29 2.85
1709 1722 0.980231 GATGTCCACTGAGGCCCTCT 60.980 60.000 12.94 0.00 37.29 3.69
1710 1723 1.524482 GATGTCCACTGAGGCCCTC 59.476 63.158 2.98 2.98 37.29 4.30
1711 1724 1.997874 GGATGTCCACTGAGGCCCT 60.998 63.158 0.00 0.00 37.29 5.19
1712 1725 2.592308 GGATGTCCACTGAGGCCC 59.408 66.667 0.00 0.00 37.29 5.80
1713 1726 2.262774 CTGGGATGTCCACTGAGGCC 62.263 65.000 0.00 0.00 41.46 5.19
1714 1727 1.222936 CTGGGATGTCCACTGAGGC 59.777 63.158 0.86 0.00 41.46 4.70
1715 1728 0.618680 TCCTGGGATGTCCACTGAGG 60.619 60.000 0.86 1.12 41.46 3.86
1716 1729 1.140452 CATCCTGGGATGTCCACTGAG 59.860 57.143 18.55 0.00 44.93 3.35
1717 1730 1.206878 CATCCTGGGATGTCCACTGA 58.793 55.000 18.55 0.00 44.93 3.41
1718 1731 3.794737 CATCCTGGGATGTCCACTG 57.205 57.895 18.55 0.00 44.93 3.66
1726 1739 0.413037 TTTTGCCACCATCCTGGGAT 59.587 50.000 0.00 0.00 43.37 3.85
1727 1740 0.541764 GTTTTGCCACCATCCTGGGA 60.542 55.000 0.00 0.00 43.37 4.37
1728 1741 1.876497 CGTTTTGCCACCATCCTGGG 61.876 60.000 0.00 0.00 43.37 4.45
1729 1742 0.893270 TCGTTTTGCCACCATCCTGG 60.893 55.000 0.00 0.00 45.02 4.45
1730 1743 0.240945 GTCGTTTTGCCACCATCCTG 59.759 55.000 0.00 0.00 0.00 3.86
1731 1744 0.893727 GGTCGTTTTGCCACCATCCT 60.894 55.000 0.00 0.00 0.00 3.24
1732 1745 1.584495 GGTCGTTTTGCCACCATCC 59.416 57.895 0.00 0.00 0.00 3.51
1733 1746 0.893727 AGGGTCGTTTTGCCACCATC 60.894 55.000 0.00 0.00 31.06 3.51
1734 1747 1.152830 AGGGTCGTTTTGCCACCAT 59.847 52.632 0.00 0.00 31.06 3.55
1735 1748 1.826054 CAGGGTCGTTTTGCCACCA 60.826 57.895 0.00 0.00 31.06 4.17
1736 1749 1.515521 CTCAGGGTCGTTTTGCCACC 61.516 60.000 0.00 0.00 0.00 4.61
1737 1750 1.949257 CTCAGGGTCGTTTTGCCAC 59.051 57.895 0.00 0.00 0.00 5.01
1738 1751 1.896660 GCTCAGGGTCGTTTTGCCA 60.897 57.895 0.00 0.00 0.00 4.92
1739 1752 2.626780 GGCTCAGGGTCGTTTTGCC 61.627 63.158 0.00 0.00 0.00 4.52
1740 1753 2.626780 GGGCTCAGGGTCGTTTTGC 61.627 63.158 0.00 0.00 0.00 3.68
1741 1754 0.537371 AAGGGCTCAGGGTCGTTTTG 60.537 55.000 0.00 0.00 0.00 2.44
1742 1755 0.537371 CAAGGGCTCAGGGTCGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
1743 1756 1.073199 CAAGGGCTCAGGGTCGTTT 59.927 57.895 0.00 0.00 0.00 3.60
1744 1757 1.831652 CTCAAGGGCTCAGGGTCGTT 61.832 60.000 0.00 0.00 0.00 3.85
1745 1758 2.203788 TCAAGGGCTCAGGGTCGT 60.204 61.111 0.00 0.00 0.00 4.34
1746 1759 2.581354 CTCAAGGGCTCAGGGTCG 59.419 66.667 0.00 0.00 0.00 4.79
1747 1760 2.270527 GCTCAAGGGCTCAGGGTC 59.729 66.667 0.00 0.00 0.00 4.46
1748 1761 2.204059 AGCTCAAGGGCTCAGGGT 60.204 61.111 0.00 0.00 38.24 4.34
1756 1769 3.273788 AAAGGCCGGAGCTCAAGGG 62.274 63.158 23.48 18.05 39.73 3.95
1757 1770 2.042831 CAAAGGCCGGAGCTCAAGG 61.043 63.158 17.19 18.62 39.73 3.61
1758 1771 2.694760 GCAAAGGCCGGAGCTCAAG 61.695 63.158 17.19 8.78 39.73 3.02
1759 1772 2.672996 GCAAAGGCCGGAGCTCAA 60.673 61.111 17.19 0.00 39.73 3.02
1769 1782 2.573340 CCGATGTTGGGCAAAGGC 59.427 61.111 0.00 0.00 40.13 4.35
1770 1783 3.287445 CCCGATGTTGGGCAAAGG 58.713 61.111 0.00 0.00 43.70 3.11
1777 1790 0.246635 AAGACGAGACCCGATGTTGG 59.753 55.000 0.00 0.00 41.76 3.77
1778 1791 2.080286 AAAGACGAGACCCGATGTTG 57.920 50.000 0.00 0.00 41.76 3.33
1779 1792 3.947910 TTAAAGACGAGACCCGATGTT 57.052 42.857 0.00 0.00 41.76 2.71
1780 1793 3.181478 GGATTAAAGACGAGACCCGATGT 60.181 47.826 0.00 0.00 41.76 3.06
1781 1794 3.068307 AGGATTAAAGACGAGACCCGATG 59.932 47.826 0.00 0.00 41.76 3.84
1782 1795 3.068307 CAGGATTAAAGACGAGACCCGAT 59.932 47.826 0.00 0.00 41.76 4.18
1783 1796 2.426024 CAGGATTAAAGACGAGACCCGA 59.574 50.000 0.00 0.00 41.76 5.14
1784 1797 2.165845 ACAGGATTAAAGACGAGACCCG 59.834 50.000 0.00 0.00 45.44 5.28
1785 1798 3.447944 AGACAGGATTAAAGACGAGACCC 59.552 47.826 0.00 0.00 0.00 4.46
1786 1799 4.722361 AGACAGGATTAAAGACGAGACC 57.278 45.455 0.00 0.00 0.00 3.85
1787 1800 5.125097 TGGTAGACAGGATTAAAGACGAGAC 59.875 44.000 0.00 0.00 0.00 3.36
1788 1801 5.258841 TGGTAGACAGGATTAAAGACGAGA 58.741 41.667 0.00 0.00 0.00 4.04
1789 1802 5.578005 TGGTAGACAGGATTAAAGACGAG 57.422 43.478 0.00 0.00 0.00 4.18
1790 1803 5.578005 CTGGTAGACAGGATTAAAGACGA 57.422 43.478 0.00 0.00 43.70 4.20
1803 1816 1.134995 CGCTGAATGAGCTGGTAGACA 60.135 52.381 0.00 0.00 46.64 3.41
1804 1817 1.135139 TCGCTGAATGAGCTGGTAGAC 59.865 52.381 0.00 0.00 46.64 2.59
1805 1818 1.474330 TCGCTGAATGAGCTGGTAGA 58.526 50.000 0.00 0.00 46.64 2.59
1806 1819 2.200067 CTTCGCTGAATGAGCTGGTAG 58.800 52.381 0.00 0.00 46.64 3.18
1807 1820 1.134699 CCTTCGCTGAATGAGCTGGTA 60.135 52.381 0.00 0.00 46.64 3.25
1808 1821 0.392193 CCTTCGCTGAATGAGCTGGT 60.392 55.000 0.00 0.00 46.64 4.00
1809 1822 1.712977 GCCTTCGCTGAATGAGCTGG 61.713 60.000 0.00 0.00 46.64 4.85
1810 1823 1.712977 GGCCTTCGCTGAATGAGCTG 61.713 60.000 0.00 0.00 46.64 4.24
1811 1824 1.451028 GGCCTTCGCTGAATGAGCT 60.451 57.895 0.00 0.00 46.64 4.09
1812 1825 1.435408 GAGGCCTTCGCTGAATGAGC 61.435 60.000 6.77 0.00 45.20 4.26
1813 1826 0.107993 TGAGGCCTTCGCTGAATGAG 60.108 55.000 6.77 0.00 34.44 2.90
1814 1827 0.391661 GTGAGGCCTTCGCTGAATGA 60.392 55.000 6.77 0.00 33.43 2.57
1815 1828 0.674581 TGTGAGGCCTTCGCTGAATG 60.675 55.000 6.77 0.00 37.22 2.67
1816 1829 0.254178 ATGTGAGGCCTTCGCTGAAT 59.746 50.000 6.77 0.00 37.22 2.57
1817 1830 0.674581 CATGTGAGGCCTTCGCTGAA 60.675 55.000 6.77 0.00 37.22 3.02
1818 1831 1.078918 CATGTGAGGCCTTCGCTGA 60.079 57.895 6.77 0.00 37.22 4.26
1819 1832 2.110967 CCATGTGAGGCCTTCGCTG 61.111 63.158 6.77 2.82 37.22 5.18
1820 1833 2.270205 CCATGTGAGGCCTTCGCT 59.730 61.111 6.77 0.00 37.22 4.93
1821 1834 2.045926 ACCATGTGAGGCCTTCGC 60.046 61.111 6.77 7.80 36.83 4.70
1822 1835 1.811266 CGACCATGTGAGGCCTTCG 60.811 63.158 6.77 6.53 0.00 3.79
1823 1836 0.036388 TTCGACCATGTGAGGCCTTC 60.036 55.000 6.77 4.06 0.00 3.46
1824 1837 0.400213 TTTCGACCATGTGAGGCCTT 59.600 50.000 6.77 0.00 0.00 4.35
1825 1838 0.400213 TTTTCGACCATGTGAGGCCT 59.600 50.000 3.86 3.86 0.00 5.19
1826 1839 0.521735 GTTTTCGACCATGTGAGGCC 59.478 55.000 0.00 0.00 0.00 5.19
1827 1840 1.069227 GTGTTTTCGACCATGTGAGGC 60.069 52.381 0.00 0.00 0.00 4.70
1828 1841 2.032030 GTGTGTTTTCGACCATGTGAGG 60.032 50.000 0.00 0.00 0.00 3.86
1829 1842 2.348498 CGTGTGTTTTCGACCATGTGAG 60.348 50.000 0.00 0.00 0.00 3.51
1830 1843 1.595328 CGTGTGTTTTCGACCATGTGA 59.405 47.619 0.00 0.00 0.00 3.58
1831 1844 1.919839 GCGTGTGTTTTCGACCATGTG 60.920 52.381 0.00 0.00 0.00 3.21
1832 1845 0.306533 GCGTGTGTTTTCGACCATGT 59.693 50.000 0.00 0.00 0.00 3.21
1833 1846 0.721155 CGCGTGTGTTTTCGACCATG 60.721 55.000 0.00 0.00 0.00 3.66
1834 1847 1.155424 ACGCGTGTGTTTTCGACCAT 61.155 50.000 12.93 0.00 0.00 3.55
1835 1848 1.360194 AACGCGTGTGTTTTCGACCA 61.360 50.000 14.98 0.00 0.00 4.02
1836 1849 0.652465 GAACGCGTGTGTTTTCGACC 60.652 55.000 14.98 0.00 30.75 4.79
1837 1850 0.652465 GGAACGCGTGTGTTTTCGAC 60.652 55.000 14.98 0.00 30.75 4.20
1838 1851 0.806884 AGGAACGCGTGTGTTTTCGA 60.807 50.000 14.98 0.00 30.75 3.71
1839 1852 0.854062 TAGGAACGCGTGTGTTTTCG 59.146 50.000 14.98 0.00 30.75 3.46
1840 1853 2.834689 CATAGGAACGCGTGTGTTTTC 58.165 47.619 14.98 4.90 30.75 2.29
1841 1854 1.069500 GCATAGGAACGCGTGTGTTTT 60.069 47.619 14.98 0.00 30.75 2.43
1842 1855 0.515564 GCATAGGAACGCGTGTGTTT 59.484 50.000 14.98 0.00 30.75 2.83
1843 1856 0.320421 AGCATAGGAACGCGTGTGTT 60.320 50.000 14.98 0.00 34.02 3.32
1844 1857 0.320421 AAGCATAGGAACGCGTGTGT 60.320 50.000 14.98 0.00 0.00 3.72
1845 1858 0.370273 GAAGCATAGGAACGCGTGTG 59.630 55.000 14.98 8.47 0.00 3.82
1846 1859 0.739813 GGAAGCATAGGAACGCGTGT 60.740 55.000 14.98 2.40 0.00 4.49
1847 1860 0.739462 TGGAAGCATAGGAACGCGTG 60.739 55.000 14.98 0.00 0.00 5.34
1848 1861 0.036765 TTGGAAGCATAGGAACGCGT 60.037 50.000 5.58 5.58 0.00 6.01
1849 1862 1.083489 TTTGGAAGCATAGGAACGCG 58.917 50.000 3.53 3.53 0.00 6.01
1850 1863 1.132453 GGTTTGGAAGCATAGGAACGC 59.868 52.381 0.00 0.00 0.00 4.84
1851 1864 2.432444 TGGTTTGGAAGCATAGGAACG 58.568 47.619 0.00 0.00 33.29 3.95
1859 1872 0.893270 CCGTGGATGGTTTGGAAGCA 60.893 55.000 0.00 0.00 43.83 3.91
1860 1873 0.893727 ACCGTGGATGGTTTGGAAGC 60.894 55.000 0.00 0.00 39.99 3.86
1861 1874 2.081462 GTACCGTGGATGGTTTGGAAG 58.919 52.381 0.00 0.00 43.56 3.46
1862 1875 1.271488 GGTACCGTGGATGGTTTGGAA 60.271 52.381 0.00 0.00 43.56 3.53
1863 1876 0.325602 GGTACCGTGGATGGTTTGGA 59.674 55.000 0.00 0.00 43.56 3.53
1864 1877 0.037017 TGGTACCGTGGATGGTTTGG 59.963 55.000 7.57 0.00 43.56 3.28
1865 1878 1.810151 CTTGGTACCGTGGATGGTTTG 59.190 52.381 7.57 0.00 43.56 2.93
1866 1879 1.700739 TCTTGGTACCGTGGATGGTTT 59.299 47.619 7.57 0.00 43.56 3.27
1867 1880 1.278127 CTCTTGGTACCGTGGATGGTT 59.722 52.381 7.57 0.00 43.56 3.67
1868 1881 0.902531 CTCTTGGTACCGTGGATGGT 59.097 55.000 7.57 0.00 46.26 3.55
1869 1882 0.462047 GCTCTTGGTACCGTGGATGG 60.462 60.000 7.57 0.00 0.00 3.51
1870 1883 0.806102 CGCTCTTGGTACCGTGGATG 60.806 60.000 7.57 0.00 0.00 3.51
1871 1884 1.515954 CGCTCTTGGTACCGTGGAT 59.484 57.895 7.57 0.00 0.00 3.41
1872 1885 2.967397 CGCTCTTGGTACCGTGGA 59.033 61.111 7.57 4.36 0.00 4.02
1873 1886 2.813908 GCGCTCTTGGTACCGTGG 60.814 66.667 7.57 0.00 0.00 4.94
1874 1887 2.813908 GGCGCTCTTGGTACCGTG 60.814 66.667 7.64 2.30 0.00 4.94
1875 1888 3.307906 TGGCGCTCTTGGTACCGT 61.308 61.111 7.64 0.00 0.00 4.83
1876 1889 2.813908 GTGGCGCTCTTGGTACCG 60.814 66.667 7.64 0.00 0.00 4.02
1877 1890 1.741770 CTGTGGCGCTCTTGGTACC 60.742 63.158 7.64 4.43 0.00 3.34
1878 1891 0.108138 ATCTGTGGCGCTCTTGGTAC 60.108 55.000 7.64 0.00 0.00 3.34
1879 1892 0.613260 AATCTGTGGCGCTCTTGGTA 59.387 50.000 7.64 0.00 0.00 3.25
1880 1893 0.250901 AAATCTGTGGCGCTCTTGGT 60.251 50.000 7.64 0.00 0.00 3.67
1881 1894 0.169672 CAAATCTGTGGCGCTCTTGG 59.830 55.000 7.64 0.00 0.00 3.61
1882 1895 1.159285 TCAAATCTGTGGCGCTCTTG 58.841 50.000 7.64 2.34 0.00 3.02
1883 1896 1.537202 GTTCAAATCTGTGGCGCTCTT 59.463 47.619 7.64 0.00 0.00 2.85
1884 1897 1.160137 GTTCAAATCTGTGGCGCTCT 58.840 50.000 7.64 0.00 0.00 4.09
1885 1898 0.179215 CGTTCAAATCTGTGGCGCTC 60.179 55.000 7.64 1.21 0.00 5.03
1886 1899 1.868997 CGTTCAAATCTGTGGCGCT 59.131 52.632 7.64 0.00 0.00 5.92
1887 1900 1.797537 GCGTTCAAATCTGTGGCGC 60.798 57.895 0.00 0.00 36.65 6.53
1888 1901 1.154225 GGCGTTCAAATCTGTGGCG 60.154 57.895 0.00 0.00 0.00 5.69
1889 1902 0.598065 AAGGCGTTCAAATCTGTGGC 59.402 50.000 0.00 0.00 0.00 5.01
1890 1903 1.666888 GCAAGGCGTTCAAATCTGTGG 60.667 52.381 0.00 0.00 0.00 4.17
1891 1904 1.689959 GCAAGGCGTTCAAATCTGTG 58.310 50.000 0.00 0.00 0.00 3.66
1905 1918 4.093952 CGCCAGCACTTCGCAAGG 62.094 66.667 0.00 0.00 46.13 3.61
1906 1919 4.093952 CCGCCAGCACTTCGCAAG 62.094 66.667 0.00 0.00 46.13 4.01
1907 1920 4.927782 ACCGCCAGCACTTCGCAA 62.928 61.111 0.00 0.00 46.13 4.85
1910 1923 3.414700 GACACCGCCAGCACTTCG 61.415 66.667 0.00 0.00 0.00 3.79
1911 1924 1.237285 ATTGACACCGCCAGCACTTC 61.237 55.000 0.00 0.00 0.00 3.01
1912 1925 0.823356 AATTGACACCGCCAGCACTT 60.823 50.000 0.00 0.00 0.00 3.16
1913 1926 1.228245 AATTGACACCGCCAGCACT 60.228 52.632 0.00 0.00 0.00 4.40
1914 1927 1.210155 GAATTGACACCGCCAGCAC 59.790 57.895 0.00 0.00 0.00 4.40
1915 1928 1.971167 GGAATTGACACCGCCAGCA 60.971 57.895 0.00 0.00 0.00 4.41
1916 1929 1.244019 AAGGAATTGACACCGCCAGC 61.244 55.000 0.00 0.00 0.00 4.85
1917 1930 1.068333 CAAAGGAATTGACACCGCCAG 60.068 52.381 0.00 0.00 41.85 4.85
1918 1931 0.958091 CAAAGGAATTGACACCGCCA 59.042 50.000 0.00 0.00 41.85 5.69
1919 1932 0.388520 GCAAAGGAATTGACACCGCC 60.389 55.000 0.00 0.00 41.85 6.13
1920 1933 0.729140 CGCAAAGGAATTGACACCGC 60.729 55.000 0.00 0.00 41.85 5.68
1921 1934 0.729140 GCGCAAAGGAATTGACACCG 60.729 55.000 0.30 0.00 41.85 4.94
1922 1935 0.729140 CGCGCAAAGGAATTGACACC 60.729 55.000 8.75 0.00 41.85 4.16
1923 1936 1.337110 GCGCGCAAAGGAATTGACAC 61.337 55.000 29.10 0.00 41.85 3.67
1924 1937 1.081509 GCGCGCAAAGGAATTGACA 60.082 52.632 29.10 0.00 41.85 3.58
1925 1938 1.067199 CTGCGCGCAAAGGAATTGAC 61.067 55.000 35.50 0.00 41.85 3.18
1926 1939 1.209898 CTGCGCGCAAAGGAATTGA 59.790 52.632 35.50 7.85 41.85 2.57
1927 1940 2.438954 GCTGCGCGCAAAGGAATTG 61.439 57.895 35.50 21.11 42.21 2.32
1928 1941 2.126346 GCTGCGCGCAAAGGAATT 60.126 55.556 35.50 0.00 38.92 2.17
1929 1942 4.120331 GGCTGCGCGCAAAGGAAT 62.120 61.111 35.50 0.00 41.67 3.01
1939 1952 3.142838 ATGGATTGGTGGCTGCGC 61.143 61.111 0.00 0.00 0.00 6.09
1940 1953 1.721664 CTCATGGATTGGTGGCTGCG 61.722 60.000 0.00 0.00 0.00 5.18
1941 1954 2.012902 GCTCATGGATTGGTGGCTGC 62.013 60.000 0.00 0.00 0.00 5.25
1942 1955 1.721664 CGCTCATGGATTGGTGGCTG 61.722 60.000 0.00 0.00 0.00 4.85
1943 1956 1.452651 CGCTCATGGATTGGTGGCT 60.453 57.895 0.00 0.00 0.00 4.75
1944 1957 1.442526 CTCGCTCATGGATTGGTGGC 61.443 60.000 0.00 0.00 0.00 5.01
1945 1958 1.442526 GCTCGCTCATGGATTGGTGG 61.443 60.000 0.00 0.00 0.00 4.61
1946 1959 1.442526 GGCTCGCTCATGGATTGGTG 61.443 60.000 0.00 0.00 0.00 4.17
1947 1960 1.153086 GGCTCGCTCATGGATTGGT 60.153 57.895 0.00 0.00 0.00 3.67
1948 1961 2.249535 CGGCTCGCTCATGGATTGG 61.250 63.158 0.00 0.00 0.00 3.16
1949 1962 1.493950 GACGGCTCGCTCATGGATTG 61.494 60.000 0.00 0.00 0.00 2.67
1950 1963 1.227380 GACGGCTCGCTCATGGATT 60.227 57.895 0.00 0.00 0.00 3.01
1951 1964 2.419198 GACGGCTCGCTCATGGAT 59.581 61.111 0.00 0.00 0.00 3.41
1952 1965 4.193334 CGACGGCTCGCTCATGGA 62.193 66.667 0.00 0.00 31.91 3.41
1953 1966 4.498520 ACGACGGCTCGCTCATGG 62.499 66.667 0.00 0.00 44.33 3.66
1954 1967 3.250323 CACGACGGCTCGCTCATG 61.250 66.667 0.00 0.00 44.33 3.07
1975 1988 2.282887 TTCTTTGCGGGGAAGCCC 60.283 61.111 0.00 0.00 44.51 5.19
1976 1989 0.322187 TACTTCTTTGCGGGGAAGCC 60.322 55.000 10.77 0.00 41.64 4.35
1977 1990 1.401905 CATACTTCTTTGCGGGGAAGC 59.598 52.381 10.77 0.00 41.64 3.86
1978 1991 2.711542 ACATACTTCTTTGCGGGGAAG 58.288 47.619 9.70 9.70 43.02 3.46
1979 1992 2.871096 ACATACTTCTTTGCGGGGAA 57.129 45.000 0.00 0.00 0.00 3.97
1980 1993 5.129815 AGTTATACATACTTCTTTGCGGGGA 59.870 40.000 0.00 0.00 0.00 4.81
1981 1994 5.365619 AGTTATACATACTTCTTTGCGGGG 58.634 41.667 0.00 0.00 0.00 5.73
1982 1995 6.292168 CGAAGTTATACATACTTCTTTGCGGG 60.292 42.308 11.97 0.00 45.87 6.13
1983 1996 6.255020 ACGAAGTTATACATACTTCTTTGCGG 59.745 38.462 11.97 1.56 45.87 5.69
1984 1997 7.111139 CACGAAGTTATACATACTTCTTTGCG 58.889 38.462 11.97 4.25 45.87 4.85
1985 1998 7.064253 ACCACGAAGTTATACATACTTCTTTGC 59.936 37.037 11.97 0.00 45.87 3.68
1986 1999 8.380644 CACCACGAAGTTATACATACTTCTTTG 58.619 37.037 11.97 9.27 45.87 2.77
1987 2000 8.092687 ACACCACGAAGTTATACATACTTCTTT 58.907 33.333 11.97 0.08 45.87 2.52
1988 2001 7.609056 ACACCACGAAGTTATACATACTTCTT 58.391 34.615 11.97 2.77 45.87 2.52
1989 2002 7.166691 ACACCACGAAGTTATACATACTTCT 57.833 36.000 11.97 0.62 45.87 2.85
1990 2003 7.823149 AACACCACGAAGTTATACATACTTC 57.177 36.000 5.92 5.92 41.61 3.01
1995 2008 9.880157 ATAACTTAACACCACGAAGTTATACAT 57.120 29.630 14.48 0.00 46.78 2.29
2262 2530 5.833131 GGGCCAAGATGTATCAATTTCCTTA 59.167 40.000 4.39 0.00 0.00 2.69
2394 2662 1.876416 GCGGTTGAGAAGCAGGTTACA 60.876 52.381 0.00 0.00 0.00 2.41
2607 2875 7.501892 TGAATATAACTTAATCTGGCACATGCA 59.498 33.333 6.15 0.00 44.36 3.96
2791 3060 9.424319 CAAATAGAAATATACGTATCACTGCCT 57.576 33.333 12.24 5.95 0.00 4.75
2816 3085 8.996651 TCTAATTGTCATATCTGTAGAGGTCA 57.003 34.615 0.00 0.00 0.00 4.02
2838 3107 5.046304 AGGCAGTTCACAAGCTATTCTTCTA 60.046 40.000 0.00 0.00 31.27 2.10
2852 3121 7.486802 TGTTAAACTTAACTAGGCAGTTCAC 57.513 36.000 12.32 1.58 44.04 3.18
2892 3166 1.072159 AGTGCAGCCTCCAACTGAC 59.928 57.895 0.00 0.00 37.32 3.51
2950 3224 4.633565 GGAGAAGAAAGTAGTGCTCATTGG 59.366 45.833 0.00 0.00 0.00 3.16
3103 3377 0.902531 TACTAGGAACCAGGTGCAGC 59.097 55.000 8.11 8.11 0.00 5.25
3123 3397 3.073274 ACCAATAGCCTTGACTTGACC 57.927 47.619 0.00 0.00 0.00 4.02
3141 3415 9.135843 GCAAATTTTATGTTAACTTGGAGTACC 57.864 33.333 7.22 0.00 0.00 3.34
3300 3578 1.325476 GGCCTGCAAAGGGAATCCTG 61.325 60.000 0.00 0.00 44.07 3.86
3432 3711 3.090532 GGGGCTCTGGGGGTGTAG 61.091 72.222 0.00 0.00 0.00 2.74
3477 3756 1.450312 GGCAGCTAACCATGCGACT 60.450 57.895 0.03 0.00 43.49 4.18
3503 3782 6.574465 GCTGTGGTTCTAATACTTCAGGAAGA 60.574 42.308 15.51 0.59 40.79 2.87
3516 3795 2.418628 GCGCAATTAGCTGTGGTTCTAA 59.581 45.455 0.30 0.00 42.61 2.10
3569 3848 0.932399 CTGCAGCAACCAAAAAGCAC 59.068 50.000 0.00 0.00 0.00 4.40
3572 3851 0.249996 CCCCTGCAGCAACCAAAAAG 60.250 55.000 8.66 0.00 0.00 2.27
3577 3856 3.177884 AGTCCCCTGCAGCAACCA 61.178 61.111 8.66 0.00 0.00 3.67
3648 3927 1.497223 GCGCTGCCAGATGATGTCTC 61.497 60.000 0.00 0.00 34.00 3.36
3688 3967 4.837093 TTCATGACGAAGAATAAGGGGT 57.163 40.909 0.00 0.00 0.00 4.95
3726 4005 1.445754 CGGTGACTCTCAGCAGCTG 60.446 63.158 17.10 17.10 44.51 4.24
3756 4035 4.321718 CTCCATTATTCATCTGCACCGAT 58.678 43.478 0.00 0.00 0.00 4.18
3780 4059 0.924090 GTCTGCCTCAGCGATTTACG 59.076 55.000 0.00 0.00 44.31 3.18
3810 4089 1.883084 GGTAAGATGGACGCCGCAG 60.883 63.158 0.00 0.00 0.00 5.18
3882 4161 6.951778 ACAAACTAATAAGGCCCAGTTAACAT 59.048 34.615 8.61 0.00 31.20 2.71
3953 4232 5.220777 CGCCAAGAAAGAGTGTAAGAAACAA 60.221 40.000 0.00 0.00 40.63 2.83
4010 4289 5.711506 TCCATGACAACTTTGCAGTTATGAT 59.288 36.000 8.74 0.00 41.69 2.45
4011 4290 5.048782 GTCCATGACAACTTTGCAGTTATGA 60.049 40.000 8.74 0.00 41.69 2.15
4012 4291 5.048504 AGTCCATGACAACTTTGCAGTTATG 60.049 40.000 0.00 2.02 41.69 1.90
4013 4292 5.048504 CAGTCCATGACAACTTTGCAGTTAT 60.049 40.000 0.00 0.00 41.69 1.89
4026 4305 3.084039 GCCTTGAATTCAGTCCATGACA 58.916 45.455 8.41 0.00 37.77 3.58
4032 4311 2.096496 CACATCGCCTTGAATTCAGTCC 59.904 50.000 8.41 0.22 0.00 3.85
4040 4319 4.517075 TGTTTGTAATCACATCGCCTTGAA 59.483 37.500 0.00 0.00 33.76 2.69
4043 4322 4.699735 TCATGTTTGTAATCACATCGCCTT 59.300 37.500 0.00 0.00 33.76 4.35
4045 4324 4.614555 TCATGTTTGTAATCACATCGCC 57.385 40.909 0.00 0.00 33.76 5.54
4055 4334 4.021544 GCCCATCCAAGTTCATGTTTGTAA 60.022 41.667 0.00 0.00 0.00 2.41
4062 4342 0.458669 GCAGCCCATCCAAGTTCATG 59.541 55.000 0.00 0.00 0.00 3.07
4067 4347 2.056223 GCATGCAGCCCATCCAAGT 61.056 57.895 14.21 0.00 37.23 3.16
4077 4357 4.266070 CTGGGCGATGCATGCAGC 62.266 66.667 25.69 25.69 45.96 5.25
4080 4360 2.643272 CATCTGGGCGATGCATGC 59.357 61.111 11.82 11.82 42.75 4.06
4090 4370 2.331893 TTTTGCCGACGCATCTGGG 61.332 57.895 0.00 0.00 46.67 4.45
4091 4371 1.154225 GTTTTGCCGACGCATCTGG 60.154 57.895 0.00 0.00 46.67 3.86
4092 4372 0.179215 GAGTTTTGCCGACGCATCTG 60.179 55.000 0.00 0.00 46.67 2.90
4094 4374 1.134694 GGAGTTTTGCCGACGCATC 59.865 57.895 0.00 0.00 46.67 3.91
4116 4464 0.620556 TTTCTCTGGACTGATGGCCC 59.379 55.000 0.00 0.00 0.00 5.80
4133 4481 1.229984 CACCTCCCTCCCTCCCTTT 60.230 63.158 0.00 0.00 0.00 3.11
4137 4485 4.423209 AGCCACCTCCCTCCCTCC 62.423 72.222 0.00 0.00 0.00 4.30
4160 4508 3.640000 CGCCCCATCATTCGTCGC 61.640 66.667 0.00 0.00 0.00 5.19
4173 4521 3.798511 CCTCCCTTCCCTTCGCCC 61.799 72.222 0.00 0.00 0.00 6.13
4223 4572 4.717313 GAACCCCCACCGCTCCAC 62.717 72.222 0.00 0.00 0.00 4.02
4292 4641 1.834856 CTTGAGTGAGGCTGCAGGGA 61.835 60.000 17.12 0.00 0.00 4.20
4387 4745 3.626729 CCAATGATGGGAGGAGAAAAGCT 60.627 47.826 0.00 0.00 43.51 3.74
4388 4746 2.692041 CCAATGATGGGAGGAGAAAAGC 59.308 50.000 0.00 0.00 43.51 3.51
4428 4786 5.352569 GCAATAATGTCACTGCTCAGTTAGT 59.647 40.000 0.00 0.00 40.20 2.24
4435 4793 3.273434 TGAGGCAATAATGTCACTGCTC 58.727 45.455 0.00 0.00 35.13 4.26
4443 4801 6.820656 TGTTTGTTTGTTTGAGGCAATAATGT 59.179 30.769 0.00 0.00 0.00 2.71
4484 4847 2.295349 CCAGCCATCATAATTGAGGTGC 59.705 50.000 0.00 0.00 34.73 5.01
4522 4885 9.906111 GTCTTTCTTTTGAAATGAAATCACAAC 57.094 29.630 16.15 8.62 46.05 3.32
4523 4886 8.806634 CGTCTTTCTTTTGAAATGAAATCACAA 58.193 29.630 16.15 0.00 46.05 3.33
4525 4888 8.472236 GTCGTCTTTCTTTTGAAATGAAATCAC 58.528 33.333 16.15 14.43 46.05 3.06
4528 4891 7.488322 TGGTCGTCTTTCTTTTGAAATGAAAT 58.512 30.769 16.15 0.00 46.05 2.17
4529 4892 6.857956 TGGTCGTCTTTCTTTTGAAATGAAA 58.142 32.000 15.32 15.32 46.05 2.69
4530 4893 6.443934 TGGTCGTCTTTCTTTTGAAATGAA 57.556 33.333 2.54 2.54 46.05 2.57
4532 4895 5.458779 GGTTGGTCGTCTTTCTTTTGAAATG 59.541 40.000 0.00 0.00 46.05 2.32
4533 4896 5.588240 GGTTGGTCGTCTTTCTTTTGAAAT 58.412 37.500 0.00 0.00 46.05 2.17
4534 4897 4.437659 CGGTTGGTCGTCTTTCTTTTGAAA 60.438 41.667 0.00 0.00 45.20 2.69
4535 4898 3.064271 CGGTTGGTCGTCTTTCTTTTGAA 59.936 43.478 0.00 0.00 36.52 2.69
4546 4909 2.431942 ATCGCACGGTTGGTCGTC 60.432 61.111 0.00 0.00 41.86 4.20
4627 4991 2.046285 GCCCCATGCACTTTACGCT 61.046 57.895 0.00 0.00 40.77 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.