Multiple sequence alignment - TraesCS6D01G146000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G146000 chr6D 100.000 5972 0 0 1 5972 116367180 116361209 0.000000e+00 11029.0
1 TraesCS6D01G146000 chr6A 95.046 6036 191 39 1 5972 144723728 144717737 0.000000e+00 9391.0
2 TraesCS6D01G146000 chr6B 96.725 3664 76 20 456 4106 206448907 206445275 0.000000e+00 6061.0
3 TraesCS6D01G146000 chr6B 96.140 1114 34 4 4184 5290 206444969 206443858 0.000000e+00 1810.0
4 TraesCS6D01G146000 chr6B 91.223 695 34 9 5289 5972 206443832 206443154 0.000000e+00 920.0
5 TraesCS6D01G146000 chr6B 96.226 53 2 0 4091 4143 206445037 206444985 2.960000e-13 87.9
6 TraesCS6D01G146000 chr7D 90.152 264 21 4 3553 3815 45399748 45399489 7.410000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G146000 chr6D 116361209 116367180 5971 True 11029.000 11029 100.0000 1 5972 1 chr6D.!!$R1 5971
1 TraesCS6D01G146000 chr6A 144717737 144723728 5991 True 9391.000 9391 95.0460 1 5972 1 chr6A.!!$R1 5971
2 TraesCS6D01G146000 chr6B 206443154 206448907 5753 True 2219.725 6061 95.0785 456 5972 4 chr6B.!!$R1 5516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 156 0.395586 TACGTGGTACTACCGGCCAT 60.396 55.000 0.0 0.0 42.58 4.40 F
1378 1407 0.327964 CCCTCTCCCCCATCCTCTTT 60.328 60.000 0.0 0.0 0.00 2.52 F
1427 1457 0.250295 CCCCTTGCGTTTCTGACAGA 60.250 55.000 0.0 0.0 0.00 3.41 F
2345 2381 1.165907 AGTCATGTGTGCCAACGGTG 61.166 55.000 0.0 0.0 0.00 4.94 F
4134 4429 2.014857 GTTGTTTAGCGGAGGATTCCC 58.985 52.381 0.0 0.0 40.67 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1457 0.476771 ACGGTGTCAGACCCCAATTT 59.523 50.000 2.68 0.0 42.62 1.82 R
2384 2422 6.015688 AGGAAAAAGATGCTGCATATATGTGG 60.016 38.462 16.23 8.3 0.00 4.17 R
2804 2843 6.652481 CGACAAGAAGATATGCATTAGGGAAT 59.348 38.462 3.54 0.0 0.00 3.01 R
4151 4456 4.452455 AGAAGTGCTATCAAGTCCAAAACG 59.548 41.667 0.00 0.0 0.00 3.60 R
5367 5708 0.753111 GAGGCGCAGGGAATCCAAAT 60.753 55.000 10.83 0.0 34.83 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.131396 CAAGCGTTACTACATCATCCCC 58.869 50.000 0.00 0.00 0.00 4.81
57 58 0.960364 TGCAGAAAAGCCCCTAAGCG 60.960 55.000 0.00 0.00 38.01 4.68
58 59 1.657751 GCAGAAAAGCCCCTAAGCGG 61.658 60.000 0.00 0.00 38.01 5.52
69 70 1.410648 CCCTAAGCGGTAGTAGGTCCA 60.411 57.143 10.64 0.00 35.97 4.02
132 146 2.636768 ACCGCTTTAGTACGTGGTAC 57.363 50.000 0.00 0.00 41.89 3.34
134 148 3.343617 ACCGCTTTAGTACGTGGTACTA 58.656 45.455 10.70 10.70 45.99 1.82
135 149 3.127030 ACCGCTTTAGTACGTGGTACTAC 59.873 47.826 13.59 0.00 46.86 2.73
136 150 3.487544 CCGCTTTAGTACGTGGTACTACC 60.488 52.174 13.59 0.00 46.86 3.18
137 151 3.685058 GCTTTAGTACGTGGTACTACCG 58.315 50.000 13.59 9.53 46.86 4.02
139 153 1.663695 TAGTACGTGGTACTACCGGC 58.336 55.000 0.00 0.00 45.99 6.13
140 154 1.032114 AGTACGTGGTACTACCGGCC 61.032 60.000 0.00 0.00 45.99 6.13
141 155 1.001517 TACGTGGTACTACCGGCCA 60.002 57.895 0.00 0.00 42.58 5.36
142 156 0.395586 TACGTGGTACTACCGGCCAT 60.396 55.000 0.00 0.00 42.58 4.40
143 157 0.395586 ACGTGGTACTACCGGCCATA 60.396 55.000 0.00 0.00 42.58 2.74
157 171 3.318017 CGGCCATATGTGCTAGAAGTAC 58.682 50.000 2.24 0.00 0.00 2.73
159 173 4.217767 CGGCCATATGTGCTAGAAGTACTA 59.782 45.833 2.24 0.00 31.77 1.82
191 205 2.158755 GGAGTGGTGCTGGCTACAATAT 60.159 50.000 0.00 0.00 0.00 1.28
196 210 4.152402 GTGGTGCTGGCTACAATATTATCG 59.848 45.833 0.00 0.00 0.00 2.92
203 217 4.935205 TGGCTACAATATTATCGGATGTGC 59.065 41.667 0.00 0.00 0.00 4.57
211 225 8.077991 ACAATATTATCGGATGTGCATTTTCAG 58.922 33.333 0.00 0.00 0.00 3.02
215 229 4.844998 TCGGATGTGCATTTTCAGAAAA 57.155 36.364 10.80 10.80 34.41 2.29
231 245 8.610248 TTTCAGAAAACAGACGTAAATGGATA 57.390 30.769 0.00 0.00 0.00 2.59
244 258 6.040616 ACGTAAATGGATACTCTCCTCGAAAT 59.959 38.462 0.00 0.00 45.21 2.17
300 314 9.355215 TGTTTTGTGTACGTGTTTAATTTCATT 57.645 25.926 0.00 0.00 0.00 2.57
310 324 9.010029 ACGTGTTTAATTTCATTCATACCTTCT 57.990 29.630 0.00 0.00 0.00 2.85
318 332 5.531122 TCATTCATACCTTCTAACTCGGG 57.469 43.478 0.00 0.00 0.00 5.14
320 334 2.037144 TCATACCTTCTAACTCGGGCC 58.963 52.381 0.00 0.00 0.00 5.80
324 338 1.687297 CCTTCTAACTCGGGCCCCTC 61.687 65.000 18.66 0.00 0.00 4.30
336 350 2.748465 CGGGCCCCTCTTAAAAGTATGG 60.748 54.545 18.66 0.00 0.00 2.74
337 351 2.512476 GGGCCCCTCTTAAAAGTATGGA 59.488 50.000 12.23 0.00 0.00 3.41
349 363 9.457436 TCTTAAAAGTATGGATTTCCTACAACC 57.543 33.333 0.00 0.00 36.82 3.77
353 367 8.485578 AAAGTATGGATTTCCTACAACCAAAA 57.514 30.769 0.00 0.00 36.82 2.44
435 449 3.130869 TCTTGTGCCACCATTGAATATGC 59.869 43.478 0.00 0.00 0.00 3.14
438 452 2.033372 TGCCACCATTGAATATGCCTG 58.967 47.619 0.00 0.00 0.00 4.85
495 509 7.604549 TGCATTGTCATCAACACTAAAATCAT 58.395 30.769 0.00 0.00 37.70 2.45
528 542 6.942532 GGAATTTGCACTGATTCCACTATA 57.057 37.500 21.93 0.00 46.79 1.31
529 543 7.333528 GGAATTTGCACTGATTCCACTATAA 57.666 36.000 21.93 0.00 46.79 0.98
530 544 7.945134 GGAATTTGCACTGATTCCACTATAAT 58.055 34.615 21.93 0.00 46.79 1.28
932 952 0.539986 ACCAGTCACCGTCAAACACT 59.460 50.000 0.00 0.00 0.00 3.55
1215 1237 2.679287 GAGGGGGACGTCGAGGTT 60.679 66.667 12.67 0.00 35.25 3.50
1377 1406 1.238896 TCCCTCTCCCCCATCCTCTT 61.239 60.000 0.00 0.00 0.00 2.85
1378 1407 0.327964 CCCTCTCCCCCATCCTCTTT 60.328 60.000 0.00 0.00 0.00 2.52
1427 1457 0.250295 CCCCTTGCGTTTCTGACAGA 60.250 55.000 0.00 0.00 0.00 3.41
1534 1565 1.464189 GCGCGAGGAAGTTGTTTGATC 60.464 52.381 12.10 0.00 0.00 2.92
1555 1586 2.093783 CGCAGTCCGTTCCTATTTGAAC 59.906 50.000 0.00 0.00 40.96 3.18
1556 1587 3.335579 GCAGTCCGTTCCTATTTGAACT 58.664 45.455 0.00 0.00 41.95 3.01
1623 1654 3.678548 GTCCAACGTCTGATTTAGTGGAC 59.321 47.826 12.92 12.92 36.88 4.02
1848 1880 1.600957 CTCTCGTATTGCTTGCCATGG 59.399 52.381 7.63 7.63 0.00 3.66
2173 2207 7.317722 ACCTTTCCTAGTGAAATAAGTCTGT 57.682 36.000 6.79 0.00 41.96 3.41
2180 2214 9.793259 TCCTAGTGAAATAAGTCTGTTCAAATT 57.207 29.630 0.00 0.00 33.29 1.82
2345 2381 1.165907 AGTCATGTGTGCCAACGGTG 61.166 55.000 0.00 0.00 0.00 4.94
2530 2568 7.493971 CCTGATTTTCTGTGACACCTTCTATAG 59.506 40.741 2.45 0.00 0.00 1.31
2667 2706 6.322201 CCTAAGGTTCCGTTCTACTATTGGTA 59.678 42.308 0.00 0.00 0.00 3.25
2670 2709 4.354587 GTTCCGTTCTACTATTGGTACCG 58.645 47.826 7.57 0.00 0.00 4.02
2774 2813 4.923281 GGCTGTTAAATGCGAGAAAATGTT 59.077 37.500 0.00 0.00 0.00 2.71
2804 2843 5.127194 ACTGAACTGTCTGTTGAACTGTAGA 59.873 40.000 12.85 0.00 39.30 2.59
2923 2962 3.505680 TCACTTCGCCATTGCAAGTAATT 59.494 39.130 4.94 0.00 37.00 1.40
3639 3680 7.041167 GCTATGTCAAGGTATGCAATATCAACA 60.041 37.037 0.00 0.00 30.32 3.33
3853 3894 8.200792 AGGTACTTGTATTCAGCTTCATCTTAG 58.799 37.037 0.00 0.00 27.25 2.18
4134 4429 2.014857 GTTGTTTAGCGGAGGATTCCC 58.985 52.381 0.00 0.00 40.67 3.97
4151 4456 4.782019 TTCCCAACACATACTTTGATGC 57.218 40.909 0.00 0.00 0.00 3.91
4162 4467 5.009610 ACATACTTTGATGCGTTTTGGACTT 59.990 36.000 0.00 0.00 0.00 3.01
4805 5115 2.747446 CCGTGCCCATATATGCCTAAAC 59.253 50.000 7.24 0.73 0.00 2.01
5128 5440 4.754618 TGTGTTTGTAGCTGTACTTGATGG 59.245 41.667 0.00 0.00 0.00 3.51
5242 5554 9.449719 TTCTTATTAAGAAGTCCTGTTCCATTC 57.550 33.333 13.62 0.00 42.31 2.67
5248 5560 5.552178 AGAAGTCCTGTTCCATTCTGTAAC 58.448 41.667 0.00 0.00 0.00 2.50
5251 5563 6.875972 AGTCCTGTTCCATTCTGTAACTAT 57.124 37.500 0.00 0.00 0.00 2.12
5290 5602 6.985645 CCATTTTTGACATCAAACTTTGAGGA 59.014 34.615 20.19 0.00 43.68 3.71
5291 5603 7.495279 CCATTTTTGACATCAAACTTTGAGGAA 59.505 33.333 20.19 6.47 43.68 3.36
5318 5659 7.064609 GTGATAAACGACTCATCCTTTGAATCA 59.935 37.037 0.00 0.00 29.83 2.57
5319 5660 7.606073 TGATAAACGACTCATCCTTTGAATCAA 59.394 33.333 0.00 0.00 29.83 2.57
5346 5687 6.183360 GGCTTACTCTACAAATGTTGGATTCC 60.183 42.308 0.00 0.00 34.12 3.01
5478 5828 1.188219 TGAAGCAAGGAGGCTCGAGT 61.188 55.000 15.13 0.00 45.07 4.18
5581 5931 2.031768 GCCGGAGAGCCATGGATC 59.968 66.667 22.68 22.68 0.00 3.36
5617 5967 0.896226 GAGGTGGTAGCGTCTTCCTT 59.104 55.000 4.67 0.00 0.00 3.36
5622 5972 0.460459 GGTAGCGTCTTCCTTGCTCC 60.460 60.000 0.00 0.00 40.06 4.70
5663 6016 2.093658 AGGCACTGGTGGTTATAAGTCG 60.094 50.000 2.84 0.00 37.18 4.18
5671 6024 3.196254 GGTGGTTATAAGTCGACCCAAGA 59.804 47.826 13.01 0.00 32.39 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.431766 GGGGATGATGTAGTAACGCTTGT 60.432 47.826 0.00 0.00 0.00 3.16
8 9 3.039011 AGGGGATGATGTAGTAACGCTT 58.961 45.455 0.00 0.00 0.00 4.68
21 22 2.239654 CTGCAGTTTCCTAAGGGGATGA 59.760 50.000 5.25 0.00 44.66 2.92
28 29 3.057245 GGGCTTTTCTGCAGTTTCCTAAG 60.057 47.826 14.67 9.97 34.04 2.18
38 39 0.960364 CGCTTAGGGGCTTTTCTGCA 60.960 55.000 0.00 0.00 34.04 4.41
80 81 1.202348 CTGTGTGGAGCGACACTATCA 59.798 52.381 15.11 10.42 45.52 2.15
107 121 1.135286 ACGTACTAAAGCGGTAGTGCC 60.135 52.381 11.36 0.00 34.31 5.01
108 122 1.916000 CACGTACTAAAGCGGTAGTGC 59.084 52.381 11.36 9.39 35.85 4.40
124 138 0.395586 TATGGCCGGTAGTACCACGT 60.396 55.000 19.41 11.78 38.47 4.49
132 146 1.893137 TCTAGCACATATGGCCGGTAG 59.107 52.381 7.80 13.21 0.00 3.18
133 147 2.003937 TCTAGCACATATGGCCGGTA 57.996 50.000 7.80 4.50 0.00 4.02
134 148 1.070758 CTTCTAGCACATATGGCCGGT 59.929 52.381 7.80 3.53 0.00 5.28
135 149 1.070758 ACTTCTAGCACATATGGCCGG 59.929 52.381 7.80 0.00 0.00 6.13
136 150 2.533266 ACTTCTAGCACATATGGCCG 57.467 50.000 7.80 2.88 0.00 6.13
137 151 4.608948 AGTACTTCTAGCACATATGGCC 57.391 45.455 7.80 0.00 0.00 5.36
139 153 6.071840 GGGAGTAGTACTTCTAGCACATATGG 60.072 46.154 8.54 0.00 0.00 2.74
140 154 6.717540 AGGGAGTAGTACTTCTAGCACATATG 59.282 42.308 8.54 0.00 0.00 1.78
141 155 6.854578 AGGGAGTAGTACTTCTAGCACATAT 58.145 40.000 8.54 0.00 0.00 1.78
142 156 6.263412 AGGGAGTAGTACTTCTAGCACATA 57.737 41.667 8.54 0.00 0.00 2.29
143 157 5.132043 AGGGAGTAGTACTTCTAGCACAT 57.868 43.478 8.54 0.00 0.00 3.21
174 188 4.314961 CGATAATATTGTAGCCAGCACCA 58.685 43.478 0.00 0.00 0.00 4.17
175 189 3.684788 CCGATAATATTGTAGCCAGCACC 59.315 47.826 0.00 0.00 0.00 5.01
191 205 6.507958 TTTCTGAAAATGCACATCCGATAA 57.492 33.333 0.00 0.00 0.00 1.75
196 210 5.403466 GTCTGTTTTCTGAAAATGCACATCC 59.597 40.000 17.63 4.30 32.22 3.51
203 217 7.860373 TCCATTTACGTCTGTTTTCTGAAAATG 59.140 33.333 17.63 13.54 35.59 2.32
211 225 7.829378 AGAGTATCCATTTACGTCTGTTTTC 57.171 36.000 0.00 0.00 33.66 2.29
231 245 1.279271 CCCACCAATTTCGAGGAGAGT 59.721 52.381 0.00 0.00 0.00 3.24
244 258 2.324541 CCCACAATTTCTTCCCACCAA 58.675 47.619 0.00 0.00 0.00 3.67
300 314 2.037144 GGCCCGAGTTAGAAGGTATGA 58.963 52.381 0.00 0.00 0.00 2.15
310 324 1.955451 TTTAAGAGGGGCCCGAGTTA 58.045 50.000 18.95 13.26 0.00 2.24
318 332 5.302059 GGAAATCCATACTTTTAAGAGGGGC 59.698 44.000 0.00 0.00 35.64 5.80
320 334 8.272173 TGTAGGAAATCCATACTTTTAAGAGGG 58.728 37.037 1.67 0.00 38.89 4.30
324 338 9.238368 TGGTTGTAGGAAATCCATACTTTTAAG 57.762 33.333 1.67 0.00 38.89 1.85
353 367 5.916320 ACGAAATTTCCGACGCTTTTATTTT 59.084 32.000 12.54 0.00 0.00 1.82
374 388 7.736277 TCTTTGTAAGGAAAAGATCGAAGACGA 60.736 37.037 0.00 0.00 40.75 4.20
375 389 6.365247 TCTTTGTAAGGAAAAGATCGAAGACG 59.635 38.462 0.00 0.00 38.43 4.18
404 418 2.203294 GGCACAAGACGGTTGGGT 60.203 61.111 4.20 0.00 0.00 4.51
407 421 1.172180 ATGGTGGCACAAGACGGTTG 61.172 55.000 20.82 0.00 44.16 3.77
495 509 3.831911 CAGTGCAAATTCCCCTCCTTAAA 59.168 43.478 0.00 0.00 0.00 1.52
932 952 4.288234 ACTGTCAAGTGGGTCCGA 57.712 55.556 0.00 0.00 34.48 4.55
1022 1044 1.014564 GTGGAAAGGTCGAAGCCTCG 61.015 60.000 0.00 0.00 46.87 4.63
1150 1172 4.767255 GGAGGACTGCGGCACCTG 62.767 72.222 16.02 1.48 33.89 4.00
1153 1175 4.767255 CTGGGAGGACTGCGGCAC 62.767 72.222 0.00 0.00 0.00 5.01
1384 1413 2.052157 GATCGAACCGAAATAGCCGAG 58.948 52.381 0.00 0.00 39.99 4.63
1386 1415 1.787155 CAGATCGAACCGAAATAGCCG 59.213 52.381 0.00 0.00 39.99 5.52
1427 1457 0.476771 ACGGTGTCAGACCCCAATTT 59.523 50.000 2.68 0.00 42.62 1.82
1534 1565 2.004583 TCAAATAGGAACGGACTGCG 57.995 50.000 0.00 0.00 0.00 5.18
1555 1586 3.250744 TGAACTGGTAATCGCGAAGAAG 58.749 45.455 15.24 9.45 0.00 2.85
1556 1587 3.250744 CTGAACTGGTAATCGCGAAGAA 58.749 45.455 15.24 0.00 0.00 2.52
1623 1654 6.350445 CCTTCCAAACCTAATCACAAGAATGG 60.350 42.308 0.00 0.00 0.00 3.16
1894 1927 6.528537 AAAGCCAAATCACACTGCATTATA 57.471 33.333 0.00 0.00 0.00 0.98
2384 2422 6.015688 AGGAAAAAGATGCTGCATATATGTGG 60.016 38.462 16.23 8.30 0.00 4.17
2804 2843 6.652481 CGACAAGAAGATATGCATTAGGGAAT 59.348 38.462 3.54 0.00 0.00 3.01
2923 2962 9.685276 ATTGGATGAAGTAAAGAATGATACACA 57.315 29.630 0.00 0.00 0.00 3.72
4151 4456 4.452455 AGAAGTGCTATCAAGTCCAAAACG 59.548 41.667 0.00 0.00 0.00 3.60
4162 4467 9.565090 AAGCATAATTTCATAGAAGTGCTATCA 57.435 29.630 0.00 0.00 40.44 2.15
4742 5052 4.201920 GCAGCAGTAAACTATTAACAGGCC 60.202 45.833 0.00 0.00 0.00 5.19
4786 5096 4.034285 AGGTTTAGGCATATATGGGCAC 57.966 45.455 14.51 0.00 0.00 5.01
4805 5115 3.844804 AGTTCCCTGGGAAGTAGTTTAGG 59.155 47.826 30.14 0.00 42.84 2.69
5025 5336 2.032549 GGATTGCGGTTGATGAAGATCG 60.033 50.000 0.00 0.00 0.00 3.69
5026 5337 3.209410 AGGATTGCGGTTGATGAAGATC 58.791 45.455 0.00 0.00 0.00 2.75
5128 5440 2.850647 CGTACGCTACTGCCTAGAAAAC 59.149 50.000 0.52 0.00 35.36 2.43
5284 5596 5.462530 TGAGTCGTTTATCACTTCCTCAA 57.537 39.130 0.00 0.00 0.00 3.02
5290 5602 6.464222 TCAAAGGATGAGTCGTTTATCACTT 58.536 36.000 0.00 0.00 39.64 3.16
5291 5603 6.037786 TCAAAGGATGAGTCGTTTATCACT 57.962 37.500 0.00 0.00 39.64 3.41
5294 5606 7.539712 TGATTCAAAGGATGAGTCGTTTATC 57.460 36.000 0.00 0.00 45.20 1.75
5295 5607 7.921786 TTGATTCAAAGGATGAGTCGTTTAT 57.078 32.000 0.00 0.00 45.20 1.40
5297 5609 6.349611 CCATTGATTCAAAGGATGAGTCGTTT 60.350 38.462 14.13 0.00 45.20 3.60
5298 5610 5.124457 CCATTGATTCAAAGGATGAGTCGTT 59.876 40.000 14.13 0.00 45.20 3.85
5299 5611 4.637534 CCATTGATTCAAAGGATGAGTCGT 59.362 41.667 14.13 0.00 45.20 4.34
5300 5612 4.497006 GCCATTGATTCAAAGGATGAGTCG 60.497 45.833 21.68 0.00 45.20 4.18
5303 5619 5.593679 AAGCCATTGATTCAAAGGATGAG 57.406 39.130 21.68 4.14 39.77 2.90
5318 5659 6.245408 TCCAACATTTGTAGAGTAAGCCATT 58.755 36.000 0.00 0.00 0.00 3.16
5319 5660 5.815581 TCCAACATTTGTAGAGTAAGCCAT 58.184 37.500 0.00 0.00 0.00 4.40
5367 5708 0.753111 GAGGCGCAGGGAATCCAAAT 60.753 55.000 10.83 0.00 34.83 2.32
5423 5773 5.562298 TTACTAGGAGCCAAGTTTTCTGT 57.438 39.130 0.00 0.00 0.00 3.41
5478 5828 2.944094 GCAGGGATTTAAAAGGGAGCGA 60.944 50.000 0.00 0.00 0.00 4.93
5581 5931 1.171308 CTCTGTGGAAGCAACCATGG 58.829 55.000 11.19 11.19 42.17 3.66
5622 5972 3.291383 TTCTGCGGGGCAAAACGG 61.291 61.111 0.00 0.00 38.41 4.44
5663 6016 2.289565 GATCGGATGGTTTCTTGGGTC 58.710 52.381 0.00 0.00 0.00 4.46
5671 6024 3.777522 AGAAGAAGAGGATCGGATGGTTT 59.222 43.478 0.00 0.00 42.67 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.