Multiple sequence alignment - TraesCS6D01G145700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G145700 chr6D 100.000 5637 0 0 1 5637 116342687 116337051 0.000000e+00 10410.0
1 TraesCS6D01G145700 chr6A 97.104 2659 69 6 1571 4226 144524097 144521444 0.000000e+00 4477.0
2 TraesCS6D01G145700 chr6A 96.270 1421 33 9 4226 5637 144521412 144520003 0.000000e+00 2313.0
3 TraesCS6D01G145700 chr6A 93.640 739 35 4 830 1559 144525065 144524330 0.000000e+00 1094.0
4 TraesCS6D01G145700 chr6B 96.362 2419 77 9 1815 4226 206013518 206011104 0.000000e+00 3969.0
5 TraesCS6D01G145700 chr6B 96.692 1421 34 6 4226 5637 206011072 206009656 0.000000e+00 2351.0
6 TraesCS6D01G145700 chr6B 91.150 1130 53 12 735 1818 206014705 206013577 0.000000e+00 1489.0
7 TraesCS6D01G145700 chr6B 87.832 715 62 16 2 707 206017807 206017109 0.000000e+00 815.0
8 TraesCS6D01G145700 chr3A 83.871 93 7 6 520 609 439285207 439285120 1.300000e-11 82.4
9 TraesCS6D01G145700 chr3A 100.000 36 0 0 646 681 741781330 741781365 3.640000e-07 67.6
10 TraesCS6D01G145700 chr2D 97.143 35 1 0 647 681 441373115 441373149 6.100000e-05 60.2
11 TraesCS6D01G145700 chr2D 96.970 33 0 1 648 680 30098167 30098198 3.000000e-03 54.7
12 TraesCS6D01G145700 chr7D 97.059 34 1 0 646 679 236831600 236831567 2.190000e-04 58.4
13 TraesCS6D01G145700 chr2A 97.059 34 1 0 646 679 768625113 768625080 2.190000e-04 58.4
14 TraesCS6D01G145700 chr1D 96.875 32 0 1 648 679 485505274 485505244 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G145700 chr6D 116337051 116342687 5636 True 10410 10410 100.000000 1 5637 1 chr6D.!!$R1 5636
1 TraesCS6D01G145700 chr6A 144520003 144525065 5062 True 2628 4477 95.671333 830 5637 3 chr6A.!!$R1 4807
2 TraesCS6D01G145700 chr6B 206009656 206017807 8151 True 2156 3969 93.009000 2 5637 4 chr6B.!!$R1 5635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 3242 1.138883 CAGCGATTCGAACGGGAGA 59.861 57.895 10.88 0.0 0.0 3.71 F
1206 3609 0.517316 CTGTCCAACGGCTTTACTGC 59.483 55.000 0.00 0.0 0.0 4.40 F
2562 5260 0.250553 CCGGAACCTTGCCTGTTGTA 60.251 55.000 0.00 0.0 0.0 2.41 F
3110 5810 1.444119 GATGGTGTGTGCGGTTGTGT 61.444 55.000 0.00 0.0 0.0 3.72 F
4478 7214 3.004944 TCCCTTTTGTTTATCCACGTTGC 59.995 43.478 0.00 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 4641 0.955919 CACCAGTTTTCGGAGGAGGC 60.956 60.000 0.00 0.0 0.00 4.70 R
3110 5810 0.321564 CAATGCTCCGTTCAGTCCCA 60.322 55.000 0.00 0.0 0.00 4.37 R
4504 7240 0.458669 CCATTGATGCAGCACCCTTC 59.541 55.000 2.94 0.0 0.00 3.46 R
4540 7276 2.143925 GCTCCTGCTTGACGTAAAACT 58.856 47.619 0.00 0.0 36.03 2.66 R
5365 8113 2.847327 ATCTCACTGTTGGTGGACTG 57.153 50.000 0.00 0.0 45.38 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.179443 ACGTCACACAAACAGATCAGT 57.821 42.857 0.00 0.00 0.00 3.41
67 68 3.329093 GCCCATCCTCTCAAGGCT 58.671 61.111 0.00 0.00 43.02 4.58
81 82 2.840038 TCAAGGCTGTACATCATCCTGT 59.160 45.455 0.00 0.00 41.22 4.00
147 148 7.132694 TGCAGTATTGTGAAGTAAGAACATG 57.867 36.000 0.00 0.00 0.00 3.21
148 149 6.149308 TGCAGTATTGTGAAGTAAGAACATGG 59.851 38.462 0.00 0.00 0.00 3.66
149 150 6.371548 GCAGTATTGTGAAGTAAGAACATGGA 59.628 38.462 0.00 0.00 0.00 3.41
151 152 8.783093 CAGTATTGTGAAGTAAGAACATGGAAA 58.217 33.333 0.00 0.00 0.00 3.13
159 160 2.496899 AGAACATGGAAATGCGGACT 57.503 45.000 0.00 0.00 0.00 3.85
185 186 5.685511 GTGATAGTTCGCACAAAACAAATGT 59.314 36.000 0.00 0.00 35.19 2.71
250 251 8.012957 AGAACTTATCGTCTCAGGTTTATCAT 57.987 34.615 0.00 0.00 0.00 2.45
284 285 6.853362 GCAGACAATGTAACTTCTCTTTTCAC 59.147 38.462 0.00 0.00 0.00 3.18
287 288 7.552687 AGACAATGTAACTTCTCTTTTCACACA 59.447 33.333 0.00 0.00 0.00 3.72
309 310 6.146184 CACAACTACTGAGGTCACAAACTATG 59.854 42.308 0.00 0.00 0.00 2.23
313 314 5.552870 ACTGAGGTCACAAACTATGAACT 57.447 39.130 0.00 0.00 46.95 3.01
330 331 9.507329 ACTATGAACTGATACAAAAGAACATGT 57.493 29.630 0.00 0.00 0.00 3.21
476 477 7.792383 TTTTTCAACATGTGTGCAAATTTTG 57.208 28.000 0.00 4.72 0.00 2.44
504 514 6.497437 GCTTTTTGGAGCATTGATTTTGTTT 58.503 32.000 0.00 0.00 42.25 2.83
505 515 6.974048 GCTTTTTGGAGCATTGATTTTGTTTT 59.026 30.769 0.00 0.00 42.25 2.43
506 516 7.488792 GCTTTTTGGAGCATTGATTTTGTTTTT 59.511 29.630 0.00 0.00 42.25 1.94
672 684 7.483580 AAGGACTTATATTTAGGATCGGAGG 57.516 40.000 0.00 0.00 0.00 4.30
687 699 2.824341 TCGGAGGGAGTAGAACTGAAAC 59.176 50.000 0.00 0.00 0.00 2.78
697 709 4.865365 AGTAGAACTGAAACTAAGCATCGC 59.135 41.667 0.00 0.00 0.00 4.58
700 712 3.319137 ACTGAAACTAAGCATCGCAGA 57.681 42.857 0.00 0.00 45.75 4.26
707 719 3.983741 ACTAAGCATCGCAGACCTTATC 58.016 45.455 0.00 0.00 42.51 1.75
708 720 2.988010 AAGCATCGCAGACCTTATCA 57.012 45.000 0.00 0.00 42.51 2.15
709 721 2.988010 AGCATCGCAGACCTTATCAA 57.012 45.000 0.00 0.00 42.51 2.57
710 722 2.831333 AGCATCGCAGACCTTATCAAG 58.169 47.619 0.00 0.00 42.51 3.02
711 723 1.262683 GCATCGCAGACCTTATCAAGC 59.737 52.381 0.00 0.00 42.51 4.01
712 724 2.554142 CATCGCAGACCTTATCAAGCA 58.446 47.619 0.00 0.00 42.51 3.91
713 725 2.760634 TCGCAGACCTTATCAAGCAA 57.239 45.000 0.00 0.00 32.52 3.91
714 726 2.621338 TCGCAGACCTTATCAAGCAAG 58.379 47.619 0.00 0.00 32.52 4.01
715 727 2.233676 TCGCAGACCTTATCAAGCAAGA 59.766 45.455 0.00 0.00 32.52 3.02
718 730 4.095483 CGCAGACCTTATCAAGCAAGAAAT 59.905 41.667 0.00 0.00 32.52 2.17
719 731 5.338365 GCAGACCTTATCAAGCAAGAAATG 58.662 41.667 0.00 0.00 32.52 2.32
740 3128 9.705290 GAAATGCTCTAAATTAACCCTCAAAAA 57.295 29.630 0.00 0.00 0.00 1.94
764 3152 9.929180 AAAAAGAAATGCTCTAAATTAACCCTC 57.071 29.630 0.00 0.00 32.46 4.30
815 3203 2.436646 CAACTAGGCGGTGGCAGG 60.437 66.667 0.00 0.00 42.47 4.85
822 3210 1.377987 GGCGGTGGCAGGTGATTTA 60.378 57.895 0.00 0.00 42.47 1.40
837 3230 4.752101 GGTGATTTATTGAGTAGCAGCGAT 59.248 41.667 0.00 0.00 0.00 4.58
849 3242 1.138883 CAGCGATTCGAACGGGAGA 59.861 57.895 10.88 0.00 0.00 3.71
1153 3556 0.539986 TCCACGCCCTTTACTCATCC 59.460 55.000 0.00 0.00 0.00 3.51
1192 3595 1.817099 CTCTGCCGGCATTCTGTCC 60.817 63.158 32.87 0.00 0.00 4.02
1206 3609 0.517316 CTGTCCAACGGCTTTACTGC 59.483 55.000 0.00 0.00 0.00 4.40
1284 3690 0.822532 TCGTCCCTTCTATCCTCCGC 60.823 60.000 0.00 0.00 0.00 5.54
1385 3792 2.901249 CGTTTCGATCTGGTTATGGGT 58.099 47.619 0.00 0.00 0.00 4.51
1469 3876 6.716898 AGCGAGTGGTAAATAACTGTAAAC 57.283 37.500 0.00 0.00 0.00 2.01
1478 3885 6.791775 GGTAAATAACTGTAAACGTTTGGTCG 59.208 38.462 23.46 11.04 0.00 4.79
1516 3930 7.241042 TGGTATGAGGACCTATATTGCTAAC 57.759 40.000 0.00 0.00 40.46 2.34
1559 3973 2.047061 AGCCAGAGGTTGTCAACTGTA 58.953 47.619 15.17 0.00 0.00 2.74
1560 3974 2.037772 AGCCAGAGGTTGTCAACTGTAG 59.962 50.000 15.17 4.20 0.00 2.74
1564 3978 4.511826 CCAGAGGTTGTCAACTGTAGAAAC 59.488 45.833 15.17 0.00 0.00 2.78
1565 3979 4.209288 CAGAGGTTGTCAACTGTAGAAACG 59.791 45.833 15.17 0.00 0.00 3.60
1624 4259 6.013984 AGTCTCCTAAAAACGGTTCATCCTTA 60.014 38.462 0.00 0.00 0.00 2.69
1711 4346 4.889832 AAAAGCTGGCTAGATTTCATCG 57.110 40.909 13.95 0.00 41.35 3.84
1726 4361 1.653609 TCATCGACAACGCTGAAATCG 59.346 47.619 0.00 0.00 40.73 3.34
1803 4439 7.311360 CCAGTAGGGACTTATTTCTTTCCTTCT 60.311 40.741 0.00 0.00 41.75 2.85
1940 4638 6.318648 GTGGTGCTGTTGATAGAATAATTGGA 59.681 38.462 0.00 0.00 0.00 3.53
1943 4641 5.527214 TGCTGTTGATAGAATAATTGGACGG 59.473 40.000 0.00 0.00 0.00 4.79
2379 5077 3.691118 GCATGGTTAGTTCAGCATTCAGA 59.309 43.478 0.00 0.00 32.42 3.27
2496 5194 3.439825 TGTATTTTCGACATGTGCAGCAT 59.560 39.130 1.15 0.00 38.60 3.79
2562 5260 0.250553 CCGGAACCTTGCCTGTTGTA 60.251 55.000 0.00 0.00 0.00 2.41
2590 5288 9.264719 CATTCTTGTATTCATGCATAGTAGTGA 57.735 33.333 0.00 0.00 0.00 3.41
2950 5648 9.090692 TCTATTTTTAGCAAGTCACGGTAATAC 57.909 33.333 0.00 0.00 0.00 1.89
2959 5657 1.545136 TCACGGTAATACGGTTCAGCA 59.455 47.619 0.64 0.00 38.39 4.41
2961 5659 3.380954 TCACGGTAATACGGTTCAGCATA 59.619 43.478 0.64 0.00 38.39 3.14
2962 5660 4.114073 CACGGTAATACGGTTCAGCATAA 58.886 43.478 0.64 0.00 38.39 1.90
3031 5731 5.934043 GCCTTTGCCATATTCTTTTTGAACT 59.066 36.000 0.00 0.00 37.52 3.01
3093 5793 6.887545 ACTACAGCTAGTGTAAAGAGACTGAT 59.112 38.462 0.00 0.00 41.28 2.90
3110 5810 1.444119 GATGGTGTGTGCGGTTGTGT 61.444 55.000 0.00 0.00 0.00 3.72
3330 6032 3.118629 GCCACTTCATATCCACACTCTCA 60.119 47.826 0.00 0.00 0.00 3.27
3434 6136 9.113838 TGTTACTGGTATAGTACTGTAAGCTAC 57.886 37.037 5.39 2.03 41.48 3.58
3687 6389 4.959596 GCTTGATGCTGAGAGAATTTCA 57.040 40.909 0.00 0.00 38.95 2.69
4256 6992 7.067129 GGATTCTTGGGTCCTATTTACTCAAAC 59.933 40.741 0.00 0.00 36.90 2.93
4478 7214 3.004944 TCCCTTTTGTTTATCCACGTTGC 59.995 43.478 0.00 0.00 0.00 4.17
4504 7240 7.541162 TGATAATTCATCTTGCTTCCAACTTG 58.459 34.615 0.00 0.00 34.46 3.16
4540 7276 1.004679 GGCCGGTCGAAAGGTTACA 60.005 57.895 1.90 0.00 0.00 2.41
4639 7375 5.326200 ACTTACTCCGAGTAATGTGAAGG 57.674 43.478 19.10 9.77 39.68 3.46
4645 7384 2.166459 CCGAGTAATGTGAAGGAGCAGA 59.834 50.000 0.00 0.00 0.00 4.26
4715 7454 3.077359 AGTTGTGCCTCTAGTTTGATGC 58.923 45.455 0.00 0.00 0.00 3.91
5116 7861 9.388346 TGTACACAAAAATTGCTATTTTCGTAG 57.612 29.630 17.23 10.63 41.83 3.51
5149 7894 8.700973 ACAAGTTAACCATAAGACCAATTGTTT 58.299 29.630 4.43 0.00 0.00 2.83
5282 8030 7.484035 AAAGATCAGCGATGGAACTTAATAC 57.516 36.000 0.00 0.00 28.77 1.89
5286 8034 5.597806 TCAGCGATGGAACTTAATACGATT 58.402 37.500 0.00 0.00 0.00 3.34
5332 8080 7.574404 GCCACTAACCTTGGTTTTATCAAGTAC 60.574 40.741 10.52 0.32 39.78 2.73
5365 8113 1.670967 GCAAATGCCAGGAAGAAGCAC 60.671 52.381 0.00 0.00 39.77 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.562082 TGTGTGACGTATGTAAAGAAGGG 58.438 43.478 0.00 0.00 0.00 3.95
67 68 5.104569 TGCATTCCTTACAGGATGATGTACA 60.105 40.000 0.00 0.00 45.34 2.90
147 148 3.270877 ACTATCACAAGTCCGCATTTCC 58.729 45.455 0.00 0.00 0.00 3.13
148 149 4.492570 CGAACTATCACAAGTCCGCATTTC 60.493 45.833 0.00 0.00 0.00 2.17
149 150 3.370978 CGAACTATCACAAGTCCGCATTT 59.629 43.478 0.00 0.00 0.00 2.32
151 152 2.540515 CGAACTATCACAAGTCCGCAT 58.459 47.619 0.00 0.00 0.00 4.73
185 186 7.280428 TGGTTTTGAGTAAACGTCACAAATCTA 59.720 33.333 0.00 0.00 45.75 1.98
193 194 5.561919 GCATCATGGTTTTGAGTAAACGTCA 60.562 40.000 0.00 0.00 45.75 4.35
199 200 5.815581 ACCTAGCATCATGGTTTTGAGTAA 58.184 37.500 0.00 0.00 0.00 2.24
250 251 6.403866 AGTTACATTGTCTGCCAAATTCAA 57.596 33.333 0.00 0.00 36.44 2.69
284 285 4.442706 AGTTTGTGACCTCAGTAGTTGTG 58.557 43.478 0.00 0.00 0.00 3.33
287 288 6.665992 TCATAGTTTGTGACCTCAGTAGTT 57.334 37.500 0.00 0.00 0.00 2.24
309 310 9.944663 TTAACACATGTTCTTTTGTATCAGTTC 57.055 29.630 0.00 0.00 39.31 3.01
313 314 9.072375 TCCATTAACACATGTTCTTTTGTATCA 57.928 29.630 0.00 0.00 39.31 2.15
328 329 3.792401 CTGCGTCCTATCCATTAACACA 58.208 45.455 0.00 0.00 0.00 3.72
330 331 2.434336 AGCTGCGTCCTATCCATTAACA 59.566 45.455 0.00 0.00 0.00 2.41
377 378 4.822036 TTGGATTTTACTGTTCACACGG 57.178 40.909 0.00 0.00 35.09 4.94
480 481 5.678132 ACAAAATCAATGCTCCAAAAAGC 57.322 34.783 0.00 0.00 42.82 3.51
481 482 8.914328 AAAAACAAAATCAATGCTCCAAAAAG 57.086 26.923 0.00 0.00 0.00 2.27
504 514 1.489649 TCGTGTAGGTGTGGGGAAAAA 59.510 47.619 0.00 0.00 0.00 1.94
505 515 1.129917 TCGTGTAGGTGTGGGGAAAA 58.870 50.000 0.00 0.00 0.00 2.29
506 516 1.129917 TTCGTGTAGGTGTGGGGAAA 58.870 50.000 0.00 0.00 0.00 3.13
507 517 1.002659 CATTCGTGTAGGTGTGGGGAA 59.997 52.381 0.00 0.00 0.00 3.97
508 518 0.611200 CATTCGTGTAGGTGTGGGGA 59.389 55.000 0.00 0.00 0.00 4.81
509 519 0.323629 ACATTCGTGTAGGTGTGGGG 59.676 55.000 0.00 0.00 0.00 4.96
510 520 1.438651 CACATTCGTGTAGGTGTGGG 58.561 55.000 0.00 0.00 38.56 4.61
522 532 2.112475 TCGCAACAAAACCACATTCG 57.888 45.000 0.00 0.00 0.00 3.34
534 544 2.207590 TGCATGCAAAATTTCGCAACA 58.792 38.095 20.30 6.97 42.37 3.33
649 660 5.958987 CCCTCCGATCCTAAATATAAGTCCT 59.041 44.000 0.00 0.00 0.00 3.85
650 661 5.956563 TCCCTCCGATCCTAAATATAAGTCC 59.043 44.000 0.00 0.00 0.00 3.85
652 663 6.563163 ACTCCCTCCGATCCTAAATATAAGT 58.437 40.000 0.00 0.00 0.00 2.24
653 664 8.053963 TCTACTCCCTCCGATCCTAAATATAAG 58.946 40.741 0.00 0.00 0.00 1.73
654 665 7.936497 TCTACTCCCTCCGATCCTAAATATAA 58.064 38.462 0.00 0.00 0.00 0.98
672 684 5.517054 CGATGCTTAGTTTCAGTTCTACTCC 59.483 44.000 0.00 0.00 0.00 3.85
687 699 3.982475 TGATAAGGTCTGCGATGCTTAG 58.018 45.455 0.00 0.00 0.00 2.18
711 723 8.055279 TGAGGGTTAATTTAGAGCATTTCTTG 57.945 34.615 0.00 0.00 37.36 3.02
712 724 8.650143 TTGAGGGTTAATTTAGAGCATTTCTT 57.350 30.769 0.00 0.00 37.36 2.52
713 725 8.650143 TTTGAGGGTTAATTTAGAGCATTTCT 57.350 30.769 0.00 0.00 40.06 2.52
714 726 9.705290 TTTTTGAGGGTTAATTTAGAGCATTTC 57.295 29.630 0.00 0.00 0.00 2.17
740 3128 8.650143 TGAGGGTTAATTTAGAGCATTTCTTT 57.350 30.769 0.00 0.00 37.36 2.52
807 3195 3.356290 ACTCAATAAATCACCTGCCACC 58.644 45.455 0.00 0.00 0.00 4.61
815 3203 5.914085 ATCGCTGCTACTCAATAAATCAC 57.086 39.130 0.00 0.00 0.00 3.06
822 3210 2.860735 GTTCGAATCGCTGCTACTCAAT 59.139 45.455 0.00 0.00 0.00 2.57
837 3230 0.316204 GTGGAACTCTCCCGTTCGAA 59.684 55.000 0.00 0.00 43.20 3.71
1469 3876 2.380660 CCATGAAACAACGACCAAACG 58.619 47.619 0.00 0.00 39.31 3.60
1478 3885 3.088532 TCATACCAGGCCATGAAACAAC 58.911 45.455 5.01 0.00 0.00 3.32
1516 3930 6.238593 GCTTGGAGGATTATGAGCAAGTAAAG 60.239 42.308 0.00 0.00 0.00 1.85
1559 3973 3.740115 AGCTGTTGTTACCATCGTTTCT 58.260 40.909 0.00 0.00 0.00 2.52
1560 3974 4.927425 TCTAGCTGTTGTTACCATCGTTTC 59.073 41.667 0.00 0.00 0.00 2.78
1564 3978 4.201589 CGTTTCTAGCTGTTGTTACCATCG 60.202 45.833 0.00 0.00 0.00 3.84
1565 3979 4.927425 TCGTTTCTAGCTGTTGTTACCATC 59.073 41.667 0.00 0.00 0.00 3.51
1711 4346 5.795766 TGATTAATCGATTTCAGCGTTGTC 58.204 37.500 17.19 2.95 0.00 3.18
1726 4361 5.106396 CGGAATGGGAGATGCTTGATTAATC 60.106 44.000 8.60 8.60 0.00 1.75
1803 4439 8.613060 ATGTTAGTATATACTTCGGTTCGAGA 57.387 34.615 20.21 0.00 37.14 4.04
1943 4641 0.955919 CACCAGTTTTCGGAGGAGGC 60.956 60.000 0.00 0.00 0.00 4.70
2406 5104 6.300354 ACAAAGTTGAACTATTTGGAGACG 57.700 37.500 12.73 0.00 38.06 4.18
2496 5194 5.993055 TCAATGCTCAAGATCAGTATTCCA 58.007 37.500 0.00 0.00 0.00 3.53
2497 5195 6.932356 TTCAATGCTCAAGATCAGTATTCC 57.068 37.500 0.00 0.00 0.00 3.01
3093 5793 2.045829 ACACAACCGCACACACCA 60.046 55.556 0.00 0.00 0.00 4.17
3110 5810 0.321564 CAATGCTCCGTTCAGTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
4256 6992 9.520204 CAATTGGCACTGTAATAAAATTCTAGG 57.480 33.333 0.00 0.00 0.00 3.02
4312 7048 4.998671 TTTCAGTTTGACATGCTGGAAA 57.001 36.364 0.00 0.00 0.00 3.13
4478 7214 7.330900 AGTTGGAAGCAAGATGAATTATCAG 57.669 36.000 0.00 0.00 39.39 2.90
4504 7240 0.458669 CCATTGATGCAGCACCCTTC 59.541 55.000 2.94 0.00 0.00 3.46
4540 7276 2.143925 GCTCCTGCTTGACGTAAAACT 58.856 47.619 0.00 0.00 36.03 2.66
4639 7375 5.106908 GGTCAGTAGAATGTTTTGTCTGCTC 60.107 44.000 0.00 0.00 34.98 4.26
4645 7384 6.485648 GGTTACTGGTCAGTAGAATGTTTTGT 59.514 38.462 10.26 0.00 43.92 2.83
4715 7454 9.338622 CACCTAACCTTTATGACTAAAATAGGG 57.661 37.037 0.00 0.00 35.08 3.53
4886 7628 7.557358 TGCATTCTGTTATTCCACTTGACATAT 59.443 33.333 0.00 0.00 0.00 1.78
4920 7662 3.466836 CCTGTTCAGTGCTGTCAGTTTA 58.533 45.455 17.56 0.00 34.60 2.01
5116 7861 9.444600 TGGTCTTATGGTTAACTTGTATCTTTC 57.555 33.333 5.42 0.00 0.00 2.62
5149 7894 4.484236 GTTGATTTCCGCATTCAACATCA 58.516 39.130 9.47 0.00 45.37 3.07
5272 8017 9.327529 CTCTCGTATACCAATCGTATTAAGTTC 57.672 37.037 0.00 0.00 38.64 3.01
5282 8030 7.956508 CTTATAAGCTCTCGTATACCAATCG 57.043 40.000 0.00 0.00 0.00 3.34
5332 8080 3.056678 TGGCATTTGCATTCACCTTACTG 60.057 43.478 4.74 0.00 44.36 2.74
5365 8113 2.847327 ATCTCACTGTTGGTGGACTG 57.153 50.000 0.00 0.00 45.38 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.