Multiple sequence alignment - TraesCS6D01G143700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G143700 chr6D 100.000 5970 0 0 1 5970 114227928 114233897 0.000000e+00 11025.0
1 TraesCS6D01G143700 chr6D 82.902 386 58 7 1350 1731 294412888 294412507 2.060000e-89 340.0
2 TraesCS6D01G143700 chr6D 82.558 86 13 2 3295 3378 455101183 455101268 2.310000e-09 75.0
3 TraesCS6D01G143700 chr6D 100.000 34 0 0 1972 2005 114229848 114229881 5.000000e-06 63.9
4 TraesCS6D01G143700 chr6D 100.000 34 0 0 1921 1954 114229899 114229932 5.000000e-06 63.9
5 TraesCS6D01G143700 chr6B 95.064 2593 78 12 3380 5970 203921744 203924288 0.000000e+00 4034.0
6 TraesCS6D01G143700 chr6B 94.485 1233 47 10 2115 3336 203920515 203921737 0.000000e+00 1881.0
7 TraesCS6D01G143700 chr6B 87.838 370 35 5 1 362 203913164 203913531 5.530000e-115 425.0
8 TraesCS6D01G143700 chr6B 95.455 242 9 2 725 964 203919599 203919840 9.390000e-103 385.0
9 TraesCS6D01G143700 chr6B 83.333 384 52 8 1351 1730 688597190 688597565 1.590000e-90 344.0
10 TraesCS6D01G143700 chr6B 83.374 409 27 22 948 1323 203919861 203920261 2.060000e-89 340.0
11 TraesCS6D01G143700 chr6B 94.611 167 6 1 1953 2116 203920304 203920470 7.680000e-64 255.0
12 TraesCS6D01G143700 chr6B 100.000 33 0 0 1922 1954 203920327 203920359 1.800000e-05 62.1
13 TraesCS6D01G143700 chr6A 91.405 1815 103 27 3380 5154 142782420 142784221 0.000000e+00 2438.0
14 TraesCS6D01G143700 chr6A 92.491 1425 87 12 1921 3336 142781000 142782413 0.000000e+00 2021.0
15 TraesCS6D01G143700 chr6A 94.389 802 30 12 5184 5970 142784410 142785211 0.000000e+00 1218.0
16 TraesCS6D01G143700 chr6A 90.353 850 51 18 948 1788 142780174 142781001 0.000000e+00 1086.0
17 TraesCS6D01G143700 chr6A 81.974 466 65 11 1 450 142779362 142779824 1.570000e-100 377.0
18 TraesCS6D01G143700 chr6A 91.781 219 11 4 725 940 142779913 142780127 1.260000e-76 298.0
19 TraesCS6D01G143700 chr6A 90.667 225 15 4 500 721 466276055 466276276 1.630000e-75 294.0
20 TraesCS6D01G143700 chr6A 95.122 41 0 1 1916 1954 142781042 142781082 5.000000e-06 63.9
21 TraesCS6D01G143700 chr5B 82.443 393 61 7 1344 1732 507805747 507806135 2.670000e-88 337.0
22 TraesCS6D01G143700 chr5B 80.336 417 63 14 1323 1731 122095673 122095268 1.260000e-76 298.0
23 TraesCS6D01G143700 chr5B 77.778 252 46 6 4 254 255549590 255549348 4.820000e-31 147.0
24 TraesCS6D01G143700 chr3B 83.424 368 49 9 1368 1731 597820629 597820988 1.240000e-86 331.0
25 TraesCS6D01G143700 chr3B 100.000 43 0 0 3338 3380 324235518 324235476 4.960000e-11 80.5
26 TraesCS6D01G143700 chr1A 81.221 426 63 14 1318 1736 63851505 63851090 1.600000e-85 327.0
27 TraesCS6D01G143700 chr5A 81.250 416 59 16 1325 1732 533345801 533345397 9.660000e-83 318.0
28 TraesCS6D01G143700 chr3D 81.010 416 65 10 1325 1731 609016697 609017107 9.660000e-83 318.0
29 TraesCS6D01G143700 chr3D 77.093 227 36 14 501 721 258918475 258918259 3.780000e-22 117.0
30 TraesCS6D01G143700 chr2D 89.427 227 17 5 500 721 636053123 636052899 4.560000e-71 279.0
31 TraesCS6D01G143700 chr2D 91.275 149 5 3 1785 1925 626411575 626411427 4.720000e-46 196.0
32 TraesCS6D01G143700 chr2D 94.545 55 1 2 3324 3378 186755933 186755985 3.830000e-12 84.2
33 TraesCS6D01G143700 chr2B 81.928 332 55 4 1 331 572680255 572679928 5.890000e-70 276.0
34 TraesCS6D01G143700 chr2B 88.571 140 8 4 1790 1921 415996160 415996299 4.790000e-36 163.0
35 TraesCS6D01G143700 chr2B 89.873 79 8 0 1010 1088 369808732 369808654 1.060000e-17 102.0
36 TraesCS6D01G143700 chr4A 87.168 226 21 6 500 722 684508332 684508552 3.570000e-62 250.0
37 TraesCS6D01G143700 chr4A 85.903 227 24 5 500 722 347512601 347512823 1.000000e-57 235.0
38 TraesCS6D01G143700 chr4A 87.143 140 9 4 1790 1921 670826720 670826858 3.730000e-32 150.0
39 TraesCS6D01G143700 chr7A 91.061 179 13 2 500 677 538447245 538447069 7.730000e-59 239.0
40 TraesCS6D01G143700 chr7A 88.095 126 7 3 1805 1922 596019982 596019857 6.240000e-30 143.0
41 TraesCS6D01G143700 chr7A 91.026 78 7 0 1010 1087 679927431 679927354 8.180000e-19 106.0
42 TraesCS6D01G143700 chr2A 83.333 228 31 5 500 721 169451898 169451672 2.820000e-48 204.0
43 TraesCS6D01G143700 chr2A 80.870 230 35 6 500 721 83467913 83468141 7.950000e-39 172.0
44 TraesCS6D01G143700 chr2A 80.328 183 24 12 500 677 723565570 723565745 1.750000e-25 128.0
45 TraesCS6D01G143700 chr2A 83.516 91 7 7 3299 3382 711978712 711978801 1.780000e-10 78.7
46 TraesCS6D01G143700 chr1D 91.489 141 4 3 1790 1922 486120899 486120759 2.840000e-43 187.0
47 TraesCS6D01G143700 chr1D 100.000 28 0 0 427 454 453584216 453584243 1.100000e-02 52.8
48 TraesCS6D01G143700 chr7B 91.139 79 7 0 1010 1088 660362506 660362428 2.280000e-19 108.0
49 TraesCS6D01G143700 chr7B 89.873 79 8 0 1010 1088 699156223 699156145 1.060000e-17 102.0
50 TraesCS6D01G143700 chr7B 87.143 70 5 4 3311 3378 718350984 718351051 6.420000e-10 76.8
51 TraesCS6D01G143700 chr7D 89.873 79 8 0 1010 1088 588068112 588068034 1.060000e-17 102.0
52 TraesCS6D01G143700 chr7D 90.625 64 4 2 3318 3380 60339131 60339069 3.830000e-12 84.2
53 TraesCS6D01G143700 chr7D 91.803 61 3 1 3322 3380 519264528 519264588 3.830000e-12 84.2
54 TraesCS6D01G143700 chr3A 92.982 57 4 0 3322 3378 726424291 726424235 3.830000e-12 84.2
55 TraesCS6D01G143700 chr3A 92.308 52 4 0 80 131 549263771 549263720 2.310000e-09 75.0
56 TraesCS6D01G143700 chr3A 95.652 46 1 1 211 256 344965405 344965449 8.300000e-09 73.1
57 TraesCS6D01G143700 chr5D 88.060 67 5 3 3314 3380 104973036 104972973 6.420000e-10 76.8
58 TraesCS6D01G143700 chr4D 95.000 40 2 0 211 250 124533518 124533479 5.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G143700 chr6D 114227928 114233897 5969 False 11025.000000 11025 100.000000 1 5970 1 chr6D.!!$F1 5969
1 TraesCS6D01G143700 chr6B 203919599 203924288 4689 False 1159.516667 4034 93.831500 725 5970 6 chr6B.!!$F3 5245
2 TraesCS6D01G143700 chr6A 142779362 142785211 5849 False 1071.700000 2438 91.073571 1 5970 7 chr6A.!!$F2 5969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 238 0.033504 AGACGCTTCAATGTCGGTGT 59.966 50.000 0.00 0.0 40.05 4.16 F
1693 1819 0.036765 TCACGGTACTGTTCATGCCC 60.037 55.000 4.06 0.0 0.00 5.36 F
1812 1938 0.038159 CTGTTCGGTTTCTCTCCGCT 60.038 55.000 0.00 0.0 46.49 5.52 F
1813 1939 0.038526 TGTTCGGTTTCTCTCCGCTC 60.039 55.000 0.00 0.0 46.49 5.03 F
1909 2035 0.108567 GAGCGGAGTGGAGAGAAACC 60.109 60.000 0.00 0.0 0.00 3.27 F
3681 3883 0.176680 CCGTCCCACAATCAGGAGAG 59.823 60.000 0.00 0.0 31.17 3.20 F
4364 4572 1.539869 AGCACATCTGGGTGGGAGT 60.540 57.895 0.00 0.0 39.19 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2024 0.032952 CACCGTTCGGTTTCTCTCCA 59.967 55.000 14.42 0.0 36.17 3.86 R
3662 3864 0.176680 CTCTCCTGATTGTGGGACGG 59.823 60.000 0.00 0.0 0.00 4.79 R
3681 3883 0.179045 AACAGGACTGCACTCACCAC 60.179 55.000 0.00 0.0 0.00 4.16 R
3713 3915 3.259425 GAACTGCTGTGGCGCTTGG 62.259 63.158 7.64 0.0 42.25 3.61 R
3974 4176 3.256558 GAGATGAACAAAAATGGGCTGC 58.743 45.455 0.00 0.0 0.00 5.25 R
4824 5073 0.748367 CTGGTGCTGATGCTGATGCT 60.748 55.000 0.00 0.0 40.48 3.79 R
5208 5616 1.200948 CTAGCTTGCTCAGTTTTGCCC 59.799 52.381 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.607148 GCTTAAATACCGGGTGGATGC 59.393 52.381 10.66 3.12 39.21 3.91
46 47 1.216710 GAGGCGTCAACCAGAGAGG 59.783 63.158 0.52 0.00 45.67 3.69
62 63 3.833070 AGAGAGGTGTTTAATGTCGGTCT 59.167 43.478 0.00 0.00 0.00 3.85
66 67 2.550606 GGTGTTTAATGTCGGTCTGCAA 59.449 45.455 0.00 0.00 0.00 4.08
75 76 2.359975 GGTCTGCAAAGGGACGGG 60.360 66.667 0.00 0.00 33.70 5.28
101 102 3.075005 GCTCGGGGTGCCAGAGTA 61.075 66.667 0.00 0.00 45.33 2.59
102 103 3.082579 GCTCGGGGTGCCAGAGTAG 62.083 68.421 0.00 0.00 45.33 2.57
131 132 1.981254 CACAAGCGCTGGTTTAATGG 58.019 50.000 16.72 0.00 0.00 3.16
132 133 0.887933 ACAAGCGCTGGTTTAATGGG 59.112 50.000 12.94 0.00 0.00 4.00
150 151 3.766691 GGTAGGCGGGCAGACGAA 61.767 66.667 3.78 0.00 35.47 3.85
153 154 3.733344 TAGGCGGGCAGACGAATGC 62.733 63.158 3.78 7.88 45.74 3.56
169 170 3.674682 CGAATGCCCTTTTTAATGCGGAA 60.675 43.478 0.00 0.00 0.00 4.30
170 171 3.525268 ATGCCCTTTTTAATGCGGAAG 57.475 42.857 0.00 0.00 0.00 3.46
171 172 2.520069 TGCCCTTTTTAATGCGGAAGA 58.480 42.857 0.00 0.00 0.00 2.87
187 188 2.392613 AAGAAAAGCGTGTGCAGCGG 62.393 55.000 11.77 0.00 46.23 5.52
220 232 1.532868 GCTGACAAGACGCTTCAATGT 59.467 47.619 2.01 2.01 0.00 2.71
221 233 2.412065 GCTGACAAGACGCTTCAATGTC 60.412 50.000 17.04 17.04 39.52 3.06
224 236 1.148310 CAAGACGCTTCAATGTCGGT 58.852 50.000 0.00 0.00 40.05 4.69
226 238 0.033504 AGACGCTTCAATGTCGGTGT 59.966 50.000 0.00 0.00 40.05 4.16
239 251 1.210413 CGGTGTCAGTGAGAGGTCG 59.790 63.158 0.00 0.00 0.00 4.79
240 252 1.516365 CGGTGTCAGTGAGAGGTCGT 61.516 60.000 0.00 0.00 0.00 4.34
243 255 0.952280 TGTCAGTGAGAGGTCGTGTC 59.048 55.000 0.00 0.00 0.00 3.67
244 256 1.240256 GTCAGTGAGAGGTCGTGTCT 58.760 55.000 0.00 0.00 0.00 3.41
248 260 0.109504 GTGAGAGGTCGTGTCTGCTC 60.110 60.000 0.00 0.00 0.00 4.26
250 262 0.170116 GAGAGGTCGTGTCTGCTCTG 59.830 60.000 0.00 0.00 0.00 3.35
251 263 0.538516 AGAGGTCGTGTCTGCTCTGT 60.539 55.000 0.00 0.00 0.00 3.41
252 264 0.387878 GAGGTCGTGTCTGCTCTGTG 60.388 60.000 0.00 0.00 0.00 3.66
254 266 2.024319 GTCGTGTCTGCTCTGTGCC 61.024 63.158 0.00 0.00 42.00 5.01
256 268 2.340078 GTGTCTGCTCTGTGCCGA 59.660 61.111 0.00 0.00 42.00 5.54
260 272 1.290324 TCTGCTCTGTGCCGACTTC 59.710 57.895 0.00 0.00 42.00 3.01
262 274 0.601046 CTGCTCTGTGCCGACTTCAA 60.601 55.000 0.00 0.00 42.00 2.69
266 278 0.250252 TCTGTGCCGACTTCAATGCA 60.250 50.000 0.00 0.00 0.00 3.96
275 287 2.028523 CGACTTCAATGCAGAGCGTAAG 59.971 50.000 0.00 0.00 43.44 2.34
295 307 1.079819 TCTGGAGGAAAAGAGCGCG 60.080 57.895 0.00 0.00 0.00 6.86
298 310 3.500642 GAGGAAAAGAGCGCGGGC 61.501 66.667 17.92 17.92 40.37 6.13
316 328 0.253327 GCGAGGGAGAGGATTTTGGT 59.747 55.000 0.00 0.00 0.00 3.67
318 330 2.359900 CGAGGGAGAGGATTTTGGTTG 58.640 52.381 0.00 0.00 0.00 3.77
336 348 2.897326 GTTGGGCCAGGTTTGTTAGAAT 59.103 45.455 6.23 0.00 0.00 2.40
345 357 0.800012 TTTGTTAGAATCGGGCGTGC 59.200 50.000 0.00 0.00 0.00 5.34
362 374 3.059982 CCAGCGGTTCTGACTCCA 58.940 61.111 0.00 0.00 45.72 3.86
363 375 1.374758 CCAGCGGTTCTGACTCCAC 60.375 63.158 0.00 0.00 45.72 4.02
364 376 1.367471 CAGCGGTTCTGACTCCACA 59.633 57.895 0.00 0.00 45.72 4.17
365 377 0.946221 CAGCGGTTCTGACTCCACAC 60.946 60.000 0.00 0.00 45.72 3.82
369 382 1.270305 CGGTTCTGACTCCACACACAT 60.270 52.381 0.26 0.00 0.00 3.21
371 384 2.417719 GTTCTGACTCCACACACATCC 58.582 52.381 0.00 0.00 0.00 3.51
377 390 0.238289 CTCCACACACATCCGTTTGC 59.762 55.000 0.00 0.00 0.00 3.68
381 394 0.951558 ACACACATCCGTTTGCTTCC 59.048 50.000 0.00 0.00 0.00 3.46
386 399 0.596082 CATCCGTTTGCTTCCGGTTT 59.404 50.000 0.00 0.00 44.51 3.27
387 400 0.596082 ATCCGTTTGCTTCCGGTTTG 59.404 50.000 0.00 0.00 44.51 2.93
388 401 1.660264 CCGTTTGCTTCCGGTTTGC 60.660 57.895 0.00 5.18 39.38 3.68
390 403 1.660264 GTTTGCTTCCGGTTTGCGG 60.660 57.895 0.00 0.00 0.00 5.69
391 404 2.851071 TTTGCTTCCGGTTTGCGGG 61.851 57.895 0.00 0.00 36.54 6.13
411 425 1.936658 AAAAAGACGTTCGGACCGC 59.063 52.632 9.66 0.00 0.00 5.68
430 444 2.586900 GCCTCGCGAACAGATATAGAC 58.413 52.381 11.33 0.00 0.00 2.59
433 447 1.534163 TCGCGAACAGATATAGACCCG 59.466 52.381 6.20 0.00 0.00 5.28
434 448 1.266175 CGCGAACAGATATAGACCCGT 59.734 52.381 0.00 0.00 0.00 5.28
450 465 0.387202 CCGTGTTGGATGGCAAAACA 59.613 50.000 9.00 9.00 42.00 2.83
451 466 1.000731 CCGTGTTGGATGGCAAAACAT 59.999 47.619 14.30 0.00 42.00 2.71
459 474 2.800516 TGGCAAAACATGTCACGGT 58.199 47.368 0.00 0.00 39.16 4.83
460 475 1.107114 TGGCAAAACATGTCACGGTT 58.893 45.000 0.00 0.00 39.16 4.44
462 477 0.852136 GCAAAACATGTCACGGTTGC 59.148 50.000 0.00 7.07 35.13 4.17
464 479 2.118683 CAAAACATGTCACGGTTGCAG 58.881 47.619 0.00 0.00 0.00 4.41
466 481 1.795170 AACATGTCACGGTTGCAGGC 61.795 55.000 0.00 0.00 0.00 4.85
467 482 3.049674 ATGTCACGGTTGCAGGCG 61.050 61.111 0.00 0.00 0.00 5.52
470 485 4.555709 TCACGGTTGCAGGCGGTT 62.556 61.111 0.00 0.00 0.00 4.44
475 504 1.600916 GGTTGCAGGCGGTTCTTCT 60.601 57.895 0.00 0.00 0.00 2.85
478 507 0.108585 TTGCAGGCGGTTCTTCTTCT 59.891 50.000 0.00 0.00 0.00 2.85
498 527 2.415983 TCTTCTTCTTGGTCCTCCCA 57.584 50.000 0.00 0.00 43.27 4.37
499 528 1.978580 TCTTCTTCTTGGTCCTCCCAC 59.021 52.381 0.00 0.00 45.19 4.61
500 529 1.003696 CTTCTTCTTGGTCCTCCCACC 59.996 57.143 0.00 0.00 45.19 4.61
501 530 1.192146 TCTTCTTGGTCCTCCCACCG 61.192 60.000 0.00 0.00 45.19 4.94
502 531 2.804828 CTTCTTGGTCCTCCCACCGC 62.805 65.000 0.00 0.00 45.19 5.68
503 532 4.410400 CTTGGTCCTCCCACCGCC 62.410 72.222 0.00 0.00 45.19 6.13
522 551 4.024984 CCCCCTCCACCTCCTCCA 62.025 72.222 0.00 0.00 0.00 3.86
524 553 2.780693 CCCTCCACCTCCTCCAGA 59.219 66.667 0.00 0.00 0.00 3.86
525 554 1.382420 CCCTCCACCTCCTCCAGAG 60.382 68.421 0.00 0.00 42.83 3.35
526 555 2.063378 CCTCCACCTCCTCCAGAGC 61.063 68.421 0.00 0.00 41.74 4.09
527 556 2.039624 TCCACCTCCTCCAGAGCC 59.960 66.667 0.00 0.00 41.74 4.70
528 557 2.040278 CCACCTCCTCCAGAGCCT 59.960 66.667 0.00 0.00 41.74 4.58
529 558 2.365586 CCACCTCCTCCAGAGCCTG 61.366 68.421 0.00 0.00 41.74 4.85
530 559 1.305633 CACCTCCTCCAGAGCCTGA 60.306 63.158 4.00 0.00 41.74 3.86
531 560 0.690411 CACCTCCTCCAGAGCCTGAT 60.690 60.000 4.00 0.00 41.74 2.90
532 561 0.043940 ACCTCCTCCAGAGCCTGATT 59.956 55.000 4.00 0.00 41.74 2.57
533 562 1.292242 ACCTCCTCCAGAGCCTGATTA 59.708 52.381 4.00 0.00 41.74 1.75
534 563 1.969923 CCTCCTCCAGAGCCTGATTAG 59.030 57.143 4.00 0.02 41.74 1.73
535 564 2.425538 CCTCCTCCAGAGCCTGATTAGA 60.426 54.545 4.00 0.00 41.74 2.10
536 565 3.509442 CTCCTCCAGAGCCTGATTAGAT 58.491 50.000 4.00 0.00 35.31 1.98
537 566 3.237746 TCCTCCAGAGCCTGATTAGATG 58.762 50.000 4.00 0.00 32.44 2.90
538 567 2.289569 CCTCCAGAGCCTGATTAGATGC 60.290 54.545 4.00 0.00 32.44 3.91
539 568 2.633967 CTCCAGAGCCTGATTAGATGCT 59.366 50.000 4.00 0.00 36.62 3.79
540 569 3.044156 TCCAGAGCCTGATTAGATGCTT 58.956 45.455 4.00 0.00 33.41 3.91
541 570 3.139850 CCAGAGCCTGATTAGATGCTTG 58.860 50.000 4.00 0.00 33.41 4.01
542 571 3.139850 CAGAGCCTGATTAGATGCTTGG 58.860 50.000 0.00 0.00 33.41 3.61
543 572 1.878734 GAGCCTGATTAGATGCTTGGC 59.121 52.381 0.00 0.00 39.19 4.52
544 573 0.590195 GCCTGATTAGATGCTTGGCG 59.410 55.000 0.00 0.00 0.00 5.69
545 574 1.811558 GCCTGATTAGATGCTTGGCGA 60.812 52.381 0.00 0.00 0.00 5.54
546 575 2.141517 CCTGATTAGATGCTTGGCGAG 58.858 52.381 0.00 0.00 0.00 5.03
608 637 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
609 638 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
610 639 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
611 640 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
622 651 2.859992 GCCCTCAGCAGTACCTTTG 58.140 57.895 0.00 0.00 42.97 2.77
623 652 0.678048 GCCCTCAGCAGTACCTTTGG 60.678 60.000 0.00 0.00 42.97 3.28
624 653 0.984230 CCCTCAGCAGTACCTTTGGA 59.016 55.000 0.00 0.00 0.00 3.53
625 654 1.561542 CCCTCAGCAGTACCTTTGGAT 59.438 52.381 0.00 0.00 0.00 3.41
626 655 2.420687 CCCTCAGCAGTACCTTTGGATC 60.421 54.545 0.00 0.00 0.00 3.36
627 656 2.503356 CCTCAGCAGTACCTTTGGATCT 59.497 50.000 0.00 0.00 0.00 2.75
628 657 3.431486 CCTCAGCAGTACCTTTGGATCTC 60.431 52.174 0.00 0.00 0.00 2.75
629 658 2.166459 TCAGCAGTACCTTTGGATCTCG 59.834 50.000 0.00 0.00 0.00 4.04
630 659 1.482593 AGCAGTACCTTTGGATCTCGG 59.517 52.381 0.00 0.00 0.00 4.63
631 660 1.207329 GCAGTACCTTTGGATCTCGGT 59.793 52.381 0.00 0.00 0.00 4.69
632 661 2.893637 CAGTACCTTTGGATCTCGGTG 58.106 52.381 0.00 0.00 0.00 4.94
633 662 2.233922 CAGTACCTTTGGATCTCGGTGT 59.766 50.000 0.00 0.00 0.00 4.16
634 663 2.233922 AGTACCTTTGGATCTCGGTGTG 59.766 50.000 0.00 0.00 0.00 3.82
635 664 1.056660 ACCTTTGGATCTCGGTGTGT 58.943 50.000 0.00 0.00 0.00 3.72
636 665 1.420138 ACCTTTGGATCTCGGTGTGTT 59.580 47.619 0.00 0.00 0.00 3.32
637 666 2.158667 ACCTTTGGATCTCGGTGTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
638 667 2.884639 CCTTTGGATCTCGGTGTGTTTT 59.115 45.455 0.00 0.00 0.00 2.43
639 668 3.317993 CCTTTGGATCTCGGTGTGTTTTT 59.682 43.478 0.00 0.00 0.00 1.94
659 688 6.425577 TTTTTAGGTGTGTGTGTTCTGTAC 57.574 37.500 0.00 0.00 0.00 2.90
660 689 5.347620 TTTAGGTGTGTGTGTTCTGTACT 57.652 39.130 0.00 0.00 0.00 2.73
661 690 6.468333 TTTAGGTGTGTGTGTTCTGTACTA 57.532 37.500 0.00 0.00 0.00 1.82
662 691 4.585955 AGGTGTGTGTGTTCTGTACTAG 57.414 45.455 0.00 0.00 0.00 2.57
663 692 4.212716 AGGTGTGTGTGTTCTGTACTAGA 58.787 43.478 0.00 0.00 0.00 2.43
664 693 4.037684 AGGTGTGTGTGTTCTGTACTAGAC 59.962 45.833 0.00 0.00 34.43 2.59
665 694 4.296690 GTGTGTGTGTTCTGTACTAGACC 58.703 47.826 0.00 0.00 34.43 3.85
666 695 4.037684 GTGTGTGTGTTCTGTACTAGACCT 59.962 45.833 0.00 0.00 34.43 3.85
667 696 4.647853 TGTGTGTGTTCTGTACTAGACCTT 59.352 41.667 0.00 0.00 34.43 3.50
668 697 4.982916 GTGTGTGTTCTGTACTAGACCTTG 59.017 45.833 0.00 0.00 34.43 3.61
669 698 4.647853 TGTGTGTTCTGTACTAGACCTTGT 59.352 41.667 0.00 0.00 34.43 3.16
670 699 5.829391 TGTGTGTTCTGTACTAGACCTTGTA 59.171 40.000 0.00 0.00 34.43 2.41
671 700 6.492429 TGTGTGTTCTGTACTAGACCTTGTAT 59.508 38.462 0.00 0.00 34.43 2.29
672 701 7.666804 TGTGTGTTCTGTACTAGACCTTGTATA 59.333 37.037 0.00 0.00 34.43 1.47
673 702 8.684520 GTGTGTTCTGTACTAGACCTTGTATAT 58.315 37.037 0.00 0.00 34.43 0.86
674 703 8.683615 TGTGTTCTGTACTAGACCTTGTATATG 58.316 37.037 0.00 0.00 34.43 1.78
675 704 8.684520 GTGTTCTGTACTAGACCTTGTATATGT 58.315 37.037 0.00 0.00 34.43 2.29
676 705 8.683615 TGTTCTGTACTAGACCTTGTATATGTG 58.316 37.037 0.00 0.00 34.43 3.21
677 706 8.684520 GTTCTGTACTAGACCTTGTATATGTGT 58.315 37.037 0.00 0.00 34.43 3.72
678 707 8.221965 TCTGTACTAGACCTTGTATATGTGTG 57.778 38.462 0.00 0.00 0.00 3.82
679 708 7.832685 TCTGTACTAGACCTTGTATATGTGTGT 59.167 37.037 0.00 0.00 0.00 3.72
680 709 7.768240 TGTACTAGACCTTGTATATGTGTGTG 58.232 38.462 0.00 0.00 0.00 3.82
681 710 6.852420 ACTAGACCTTGTATATGTGTGTGT 57.148 37.500 0.00 0.00 0.00 3.72
682 711 7.241042 ACTAGACCTTGTATATGTGTGTGTT 57.759 36.000 0.00 0.00 0.00 3.32
683 712 7.321153 ACTAGACCTTGTATATGTGTGTGTTC 58.679 38.462 0.00 0.00 0.00 3.18
684 713 6.360370 AGACCTTGTATATGTGTGTGTTCT 57.640 37.500 0.00 0.00 0.00 3.01
685 714 6.166279 AGACCTTGTATATGTGTGTGTTCTG 58.834 40.000 0.00 0.00 0.00 3.02
686 715 5.865085 ACCTTGTATATGTGTGTGTTCTGT 58.135 37.500 0.00 0.00 0.00 3.41
687 716 6.999950 ACCTTGTATATGTGTGTGTTCTGTA 58.000 36.000 0.00 0.00 0.00 2.74
688 717 6.872020 ACCTTGTATATGTGTGTGTTCTGTAC 59.128 38.462 0.00 0.00 0.00 2.90
689 718 7.097192 CCTTGTATATGTGTGTGTTCTGTACT 58.903 38.462 0.00 0.00 0.00 2.73
690 719 8.248253 CCTTGTATATGTGTGTGTTCTGTACTA 58.752 37.037 0.00 0.00 0.00 1.82
691 720 9.290483 CTTGTATATGTGTGTGTTCTGTACTAG 57.710 37.037 0.00 0.00 0.00 2.57
692 721 8.570068 TGTATATGTGTGTGTTCTGTACTAGA 57.430 34.615 0.00 0.00 0.00 2.43
693 722 8.456471 TGTATATGTGTGTGTTCTGTACTAGAC 58.544 37.037 0.00 0.00 34.43 2.59
694 723 4.579454 TGTGTGTGTTCTGTACTAGACC 57.421 45.455 0.00 0.00 34.43 3.85
695 724 4.212716 TGTGTGTGTTCTGTACTAGACCT 58.787 43.478 0.00 0.00 34.43 3.85
696 725 4.647853 TGTGTGTGTTCTGTACTAGACCTT 59.352 41.667 0.00 0.00 34.43 3.50
697 726 5.128171 TGTGTGTGTTCTGTACTAGACCTTT 59.872 40.000 0.00 0.00 34.43 3.11
698 727 5.462398 GTGTGTGTTCTGTACTAGACCTTTG 59.538 44.000 0.00 0.00 34.43 2.77
699 728 5.361571 TGTGTGTTCTGTACTAGACCTTTGA 59.638 40.000 0.00 0.00 34.43 2.69
700 729 6.127281 TGTGTGTTCTGTACTAGACCTTTGAA 60.127 38.462 0.00 0.00 34.43 2.69
701 730 6.759827 GTGTGTTCTGTACTAGACCTTTGAAA 59.240 38.462 0.00 0.00 34.43 2.69
702 731 6.984474 TGTGTTCTGTACTAGACCTTTGAAAG 59.016 38.462 0.00 0.00 34.43 2.62
703 732 5.989777 TGTTCTGTACTAGACCTTTGAAAGC 59.010 40.000 0.00 0.00 34.43 3.51
704 733 4.806330 TCTGTACTAGACCTTTGAAAGCG 58.194 43.478 0.00 0.00 0.00 4.68
705 734 3.921677 TGTACTAGACCTTTGAAAGCGG 58.078 45.455 0.00 0.00 0.00 5.52
706 735 2.474410 ACTAGACCTTTGAAAGCGGG 57.526 50.000 0.00 0.00 0.00 6.13
707 736 1.003233 ACTAGACCTTTGAAAGCGGGG 59.997 52.381 0.00 0.00 0.00 5.73
708 737 0.322187 TAGACCTTTGAAAGCGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
709 738 2.978018 GACCTTTGAAAGCGGGGCG 61.978 63.158 0.00 0.00 0.00 6.13
710 739 2.671619 CCTTTGAAAGCGGGGCGA 60.672 61.111 0.00 0.00 0.00 5.54
711 740 2.265182 CCTTTGAAAGCGGGGCGAA 61.265 57.895 0.00 0.00 0.00 4.70
712 741 1.657556 CTTTGAAAGCGGGGCGAAA 59.342 52.632 0.00 0.00 0.00 3.46
713 742 0.387239 CTTTGAAAGCGGGGCGAAAG 60.387 55.000 0.00 0.00 0.00 2.62
760 789 1.122632 ACACCACGTCACCACCCATA 61.123 55.000 0.00 0.00 0.00 2.74
761 790 0.251916 CACCACGTCACCACCCATAT 59.748 55.000 0.00 0.00 0.00 1.78
762 791 0.251916 ACCACGTCACCACCCATATG 59.748 55.000 0.00 0.00 0.00 1.78
763 792 0.539518 CCACGTCACCACCCATATGA 59.460 55.000 3.65 0.00 0.00 2.15
764 793 1.140852 CCACGTCACCACCCATATGAT 59.859 52.381 3.65 0.00 0.00 2.45
765 794 2.421388 CCACGTCACCACCCATATGATT 60.421 50.000 3.65 0.00 0.00 2.57
766 795 2.872245 CACGTCACCACCCATATGATTC 59.128 50.000 3.65 0.00 0.00 2.52
808 843 5.473796 TCAAATTATTCGTTCCCGCTTAC 57.526 39.130 0.00 0.00 0.00 2.34
867 902 1.144936 GCACCGATGGAGCTAGCTT 59.855 57.895 20.42 2.13 36.40 3.74
868 906 0.878086 GCACCGATGGAGCTAGCTTC 60.878 60.000 20.42 18.55 36.40 3.86
993 1085 3.006728 GTGATCGTGGGGTGGGGA 61.007 66.667 0.00 0.00 0.00 4.81
1147 1259 8.673626 TTAATTTCTCTTTTCGATGTGCATTC 57.326 30.769 0.00 0.00 0.00 2.67
1293 1414 0.230769 GCAATCGATCCGCTCTTTCG 59.769 55.000 11.46 0.00 0.00 3.46
1336 1459 5.109903 CGGTTTCTCTCGATAATTCAACCT 58.890 41.667 8.74 0.00 31.91 3.50
1347 1470 1.302907 ATTCAACCTGGAGCCCTCAT 58.697 50.000 0.00 0.00 0.00 2.90
1348 1471 0.329261 TTCAACCTGGAGCCCTCATG 59.671 55.000 0.00 0.00 0.00 3.07
1351 1474 0.842030 AACCTGGAGCCCTCATGTGA 60.842 55.000 0.00 0.00 0.00 3.58
1353 1476 1.153208 CTGGAGCCCTCATGTGAGC 60.153 63.158 4.48 0.00 40.75 4.26
1354 1477 2.191641 GGAGCCCTCATGTGAGCC 59.808 66.667 4.48 0.00 40.75 4.70
1356 1479 3.746949 GAGCCCTCATGTGAGCCCG 62.747 68.421 4.48 0.00 40.75 6.13
1358 1481 3.402681 CCCTCATGTGAGCCCGGT 61.403 66.667 0.00 0.00 40.75 5.28
1359 1482 2.124983 CCTCATGTGAGCCCGGTG 60.125 66.667 0.00 0.00 40.75 4.94
1360 1483 2.659063 CCTCATGTGAGCCCGGTGA 61.659 63.158 0.00 0.00 40.75 4.02
1361 1484 1.296392 CTCATGTGAGCCCGGTGAA 59.704 57.895 0.00 0.00 35.13 3.18
1362 1485 1.003839 TCATGTGAGCCCGGTGAAC 60.004 57.895 0.00 0.00 0.00 3.18
1363 1486 1.302431 CATGTGAGCCCGGTGAACA 60.302 57.895 0.00 0.00 0.00 3.18
1364 1487 1.003355 ATGTGAGCCCGGTGAACAG 60.003 57.895 0.00 0.00 0.00 3.16
1365 1488 1.768684 ATGTGAGCCCGGTGAACAGT 61.769 55.000 0.00 0.00 0.00 3.55
1444 1567 0.671781 AGATGCTCCTGTGCGTGAAC 60.672 55.000 0.00 0.00 35.36 3.18
1476 1599 7.754475 GCAAAATTTTGTGAAGTTTGGACATTT 59.246 29.630 27.13 0.00 40.24 2.32
1486 1609 4.464008 AGTTTGGACATTTGAGAAGCTCA 58.536 39.130 0.00 0.00 38.87 4.26
1517 1640 3.131396 AGACAAAAGTAGGCGTGAACAG 58.869 45.455 0.00 0.00 0.00 3.16
1522 1645 1.663702 GTAGGCGTGAACAGTGCGT 60.664 57.895 0.00 0.00 0.00 5.24
1526 1649 0.524604 GGCGTGAACAGTGCGTTTTT 60.525 50.000 0.00 0.00 38.19 1.94
1562 1686 5.245075 AGACATCCGAAATTTGCCCTTTTTA 59.755 36.000 0.00 0.00 0.00 1.52
1563 1687 5.234752 ACATCCGAAATTTGCCCTTTTTAC 58.765 37.500 0.00 0.00 0.00 2.01
1564 1688 3.903360 TCCGAAATTTGCCCTTTTTACG 58.097 40.909 0.00 0.00 0.00 3.18
1572 1696 1.154197 GCCCTTTTTACGACGAGCTT 58.846 50.000 0.00 0.00 0.00 3.74
1574 1698 2.685100 CCCTTTTTACGACGAGCTTCT 58.315 47.619 0.00 0.00 0.00 2.85
1606 1730 6.983910 TCAAACTTCACAAAATTTTACACGC 58.016 32.000 2.44 0.00 0.00 5.34
1608 1732 6.952935 AACTTCACAAAATTTTACACGCAA 57.047 29.167 2.44 0.00 0.00 4.85
1609 1733 6.325849 ACTTCACAAAATTTTACACGCAAC 57.674 33.333 2.44 0.00 0.00 4.17
1612 1738 5.161358 TCACAAAATTTTACACGCAACACA 58.839 33.333 2.44 0.00 0.00 3.72
1619 1745 1.433053 TACACGCAACACACACAGGC 61.433 55.000 0.00 0.00 0.00 4.85
1620 1746 3.209097 ACGCAACACACACAGGCC 61.209 61.111 0.00 0.00 0.00 5.19
1621 1747 2.901840 CGCAACACACACAGGCCT 60.902 61.111 0.00 0.00 0.00 5.19
1636 1762 1.285962 AGGCCTATCTTGCACCACAAT 59.714 47.619 1.29 0.00 37.72 2.71
1641 1767 5.337169 GGCCTATCTTGCACCACAATAAAAA 60.337 40.000 0.00 0.00 37.72 1.94
1643 1769 6.818142 GCCTATCTTGCACCACAATAAAAATT 59.182 34.615 0.00 0.00 37.72 1.82
1644 1770 7.201548 GCCTATCTTGCACCACAATAAAAATTG 60.202 37.037 0.00 0.00 37.72 2.32
1645 1771 8.034215 CCTATCTTGCACCACAATAAAAATTGA 58.966 33.333 5.18 0.00 37.72 2.57
1646 1772 9.421806 CTATCTTGCACCACAATAAAAATTGAA 57.578 29.630 5.18 0.00 37.72 2.69
1647 1773 8.674263 ATCTTGCACCACAATAAAAATTGAAA 57.326 26.923 5.18 0.00 37.72 2.69
1649 1775 9.118300 TCTTGCACCACAATAAAAATTGAAATT 57.882 25.926 5.18 0.00 37.72 1.82
1650 1776 9.733219 CTTGCACCACAATAAAAATTGAAATTT 57.267 25.926 5.18 0.00 37.66 1.82
1693 1819 0.036765 TCACGGTACTGTTCATGCCC 60.037 55.000 4.06 0.00 0.00 5.36
1694 1820 0.321210 CACGGTACTGTTCATGCCCA 60.321 55.000 4.06 0.00 0.00 5.36
1696 1822 0.249120 CGGTACTGTTCATGCCCAGA 59.751 55.000 15.66 0.92 32.93 3.86
1782 1908 3.753272 TCAGGTTCATCTTGTAAGCTTGC 59.247 43.478 9.86 8.72 31.36 4.01
1790 1916 2.487762 TCTTGTAAGCTTGCCATTTCGG 59.512 45.455 9.86 0.00 38.11 4.30
1791 1917 1.173043 TGTAAGCTTGCCATTTCGGG 58.827 50.000 9.86 0.00 34.06 5.14
1799 1925 3.187058 CCATTTCGGGCCTGTTCG 58.813 61.111 12.43 1.38 0.00 3.95
1800 1926 2.406616 CCATTTCGGGCCTGTTCGG 61.407 63.158 12.43 4.58 0.00 4.30
1801 1927 1.674322 CATTTCGGGCCTGTTCGGT 60.674 57.895 12.43 0.00 34.25 4.69
1802 1928 1.074248 ATTTCGGGCCTGTTCGGTT 59.926 52.632 12.43 0.00 34.25 4.44
1803 1929 0.538746 ATTTCGGGCCTGTTCGGTTT 60.539 50.000 12.43 0.00 34.25 3.27
1804 1930 1.167781 TTTCGGGCCTGTTCGGTTTC 61.168 55.000 12.43 0.00 34.25 2.78
1805 1931 2.032071 CGGGCCTGTTCGGTTTCT 59.968 61.111 2.29 0.00 34.25 2.52
1806 1932 2.033194 CGGGCCTGTTCGGTTTCTC 61.033 63.158 2.29 0.00 34.25 2.87
1807 1933 1.375326 GGGCCTGTTCGGTTTCTCT 59.625 57.895 0.84 0.00 34.25 3.10
1808 1934 0.673956 GGGCCTGTTCGGTTTCTCTC 60.674 60.000 0.84 0.00 34.25 3.20
1809 1935 0.673956 GGCCTGTTCGGTTTCTCTCC 60.674 60.000 0.00 0.00 34.25 3.71
1811 1937 1.014564 CCTGTTCGGTTTCTCTCCGC 61.015 60.000 0.00 0.00 46.49 5.54
1812 1938 0.038159 CTGTTCGGTTTCTCTCCGCT 60.038 55.000 0.00 0.00 46.49 5.52
1813 1939 0.038526 TGTTCGGTTTCTCTCCGCTC 60.039 55.000 0.00 0.00 46.49 5.03
1814 1940 0.736672 GTTCGGTTTCTCTCCGCTCC 60.737 60.000 0.00 0.00 46.49 4.70
1815 1941 1.885163 TTCGGTTTCTCTCCGCTCCC 61.885 60.000 0.00 0.00 46.49 4.30
1816 1942 2.646175 CGGTTTCTCTCCGCTCCCA 61.646 63.158 0.00 0.00 41.48 4.37
1817 1943 1.079057 GGTTTCTCTCCGCTCCCAC 60.079 63.158 0.00 0.00 0.00 4.61
1818 1944 1.446272 GTTTCTCTCCGCTCCCACG 60.446 63.158 0.00 0.00 0.00 4.94
1819 1945 1.605451 TTTCTCTCCGCTCCCACGA 60.605 57.895 0.00 0.00 34.06 4.35
1820 1946 1.874345 TTTCTCTCCGCTCCCACGAC 61.874 60.000 0.00 0.00 34.06 4.34
1821 1947 2.752238 CTCTCCGCTCCCACGACT 60.752 66.667 0.00 0.00 34.06 4.18
1822 1948 2.750637 TCTCCGCTCCCACGACTC 60.751 66.667 0.00 0.00 34.06 3.36
1823 1949 3.062466 CTCCGCTCCCACGACTCA 61.062 66.667 0.00 0.00 34.06 3.41
1824 1950 3.057547 CTCCGCTCCCACGACTCAG 62.058 68.421 0.00 0.00 34.06 3.35
1825 1951 4.803426 CCGCTCCCACGACTCAGC 62.803 72.222 0.00 0.00 34.06 4.26
1826 1952 3.753434 CGCTCCCACGACTCAGCT 61.753 66.667 0.00 0.00 34.06 4.24
1827 1953 2.183046 GCTCCCACGACTCAGCTC 59.817 66.667 0.00 0.00 0.00 4.09
1828 1954 2.888863 CTCCCACGACTCAGCTCC 59.111 66.667 0.00 0.00 0.00 4.70
1829 1955 2.680352 TCCCACGACTCAGCTCCC 60.680 66.667 0.00 0.00 0.00 4.30
1830 1956 4.135153 CCCACGACTCAGCTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
1831 1957 4.135153 CCACGACTCAGCTCCCGG 62.135 72.222 0.00 0.00 0.00 5.73
1832 1958 3.062466 CACGACTCAGCTCCCGGA 61.062 66.667 0.73 0.00 0.00 5.14
1833 1959 2.752238 ACGACTCAGCTCCCGGAG 60.752 66.667 10.41 10.41 38.94 4.63
1863 1989 2.921126 CTGTTGCAGCTTTTTACGGAG 58.079 47.619 1.17 0.00 0.00 4.63
1865 1991 3.468770 TGTTGCAGCTTTTTACGGAGTA 58.531 40.909 1.17 0.00 45.11 2.59
1866 1992 3.496884 TGTTGCAGCTTTTTACGGAGTAG 59.503 43.478 1.17 0.00 46.93 2.57
1867 1993 2.073816 TGCAGCTTTTTACGGAGTAGC 58.926 47.619 0.00 0.00 46.93 3.58
1868 1994 2.289444 TGCAGCTTTTTACGGAGTAGCT 60.289 45.455 0.00 0.00 46.93 3.32
1869 1995 2.348971 GCAGCTTTTTACGGAGTAGCTC 59.651 50.000 0.00 0.00 46.93 4.09
1870 1996 3.585862 CAGCTTTTTACGGAGTAGCTCA 58.414 45.455 0.00 0.00 46.93 4.26
1871 1997 3.994392 CAGCTTTTTACGGAGTAGCTCAA 59.006 43.478 0.00 0.00 46.93 3.02
1872 1998 4.451096 CAGCTTTTTACGGAGTAGCTCAAA 59.549 41.667 0.00 0.00 46.93 2.69
1873 1999 4.451435 AGCTTTTTACGGAGTAGCTCAAAC 59.549 41.667 0.00 0.00 46.93 2.93
1874 2000 4.378149 GCTTTTTACGGAGTAGCTCAAACC 60.378 45.833 0.00 0.00 46.93 3.27
1875 2001 2.642139 TTACGGAGTAGCTCAAACCG 57.358 50.000 16.14 16.14 46.93 4.44
1876 2002 1.825090 TACGGAGTAGCTCAAACCGA 58.175 50.000 21.86 8.29 45.31 4.69
1877 2003 0.526662 ACGGAGTAGCTCAAACCGAG 59.473 55.000 21.86 0.00 45.31 4.63
1884 2010 3.181967 CTCAAACCGAGCTCCGCG 61.182 66.667 8.47 0.00 34.18 6.46
1902 2028 2.811317 GCGTTGAGCGGAGTGGAG 60.811 66.667 0.00 0.00 41.69 3.86
1903 2029 2.962569 CGTTGAGCGGAGTGGAGA 59.037 61.111 0.00 0.00 36.85 3.71
1904 2030 1.153939 CGTTGAGCGGAGTGGAGAG 60.154 63.158 0.00 0.00 36.85 3.20
1905 2031 1.587043 CGTTGAGCGGAGTGGAGAGA 61.587 60.000 0.00 0.00 36.85 3.10
1906 2032 0.603569 GTTGAGCGGAGTGGAGAGAA 59.396 55.000 0.00 0.00 0.00 2.87
1907 2033 1.000955 GTTGAGCGGAGTGGAGAGAAA 59.999 52.381 0.00 0.00 0.00 2.52
1908 2034 0.603569 TGAGCGGAGTGGAGAGAAAC 59.396 55.000 0.00 0.00 0.00 2.78
1909 2035 0.108567 GAGCGGAGTGGAGAGAAACC 60.109 60.000 0.00 0.00 0.00 3.27
1910 2036 1.446272 GCGGAGTGGAGAGAAACCG 60.446 63.158 0.00 0.00 42.63 4.44
1911 2037 1.874345 GCGGAGTGGAGAGAAACCGA 61.874 60.000 0.00 0.00 42.40 4.69
1912 2038 0.601558 CGGAGTGGAGAGAAACCGAA 59.398 55.000 0.00 0.00 42.40 4.30
1913 2039 1.669211 CGGAGTGGAGAGAAACCGAAC 60.669 57.143 0.00 0.00 42.40 3.95
1914 2040 1.669211 GGAGTGGAGAGAAACCGAACG 60.669 57.143 0.00 0.00 0.00 3.95
1915 2041 0.317479 AGTGGAGAGAAACCGAACGG 59.683 55.000 11.83 11.83 42.03 4.44
1963 2089 7.646922 CAGAAATATTCTTGGCATCTTGTAAGC 59.353 37.037 0.00 0.00 38.11 3.09
1964 2090 7.559170 AGAAATATTCTTGGCATCTTGTAAGCT 59.441 33.333 0.00 0.00 36.36 3.74
2133 2305 6.465607 GCCTCCTATCAATTTCCTCATCTTCT 60.466 42.308 0.00 0.00 0.00 2.85
2135 2309 8.824783 CCTCCTATCAATTTCCTCATCTTCTAT 58.175 37.037 0.00 0.00 0.00 1.98
2170 2347 9.856162 TTAGGTTAGAAAAACCATGTTTCTAGT 57.144 29.630 13.59 8.14 44.35 2.57
2177 2354 8.624776 AGAAAAACCATGTTTCTAGTCTTCTTG 58.375 33.333 7.76 0.00 42.22 3.02
2183 2360 5.537300 TGTTTCTAGTCTTCTTGTCAGCT 57.463 39.130 0.00 0.00 0.00 4.24
2191 2368 5.241662 AGTCTTCTTGTCAGCTCATTAACC 58.758 41.667 0.00 0.00 0.00 2.85
2195 2372 5.738619 TCTTGTCAGCTCATTAACCACTA 57.261 39.130 0.00 0.00 0.00 2.74
2213 2390 4.036027 CCACTACATTGTTCATGCCATCTC 59.964 45.833 0.00 0.00 36.14 2.75
2223 2400 4.077300 TCATGCCATCTCATTGTAGGTC 57.923 45.455 0.00 0.00 0.00 3.85
2226 2403 1.202580 GCCATCTCATTGTAGGTCGCT 60.203 52.381 0.00 0.00 0.00 4.93
2384 2561 0.323725 TCCCTTGCAATGCCTCCTTC 60.324 55.000 1.53 0.00 0.00 3.46
2385 2562 0.324091 CCCTTGCAATGCCTCCTTCT 60.324 55.000 1.53 0.00 0.00 2.85
2386 2563 1.553706 CCTTGCAATGCCTCCTTCTT 58.446 50.000 1.53 0.00 0.00 2.52
2395 2572 0.393132 GCCTCCTTCTTTTCCTCCCG 60.393 60.000 0.00 0.00 0.00 5.14
2402 2579 2.833631 TCTTTTCCTCCCGAGAACAC 57.166 50.000 0.00 0.00 0.00 3.32
2419 2596 5.043248 AGAACACGGAAAAAGATTTGCAAG 58.957 37.500 0.00 0.00 36.74 4.01
2467 2650 0.903942 GAAGGCAATGGCATTTCCCA 59.096 50.000 22.70 0.00 45.27 4.37
2617 2800 7.980099 AGGAATCTAAAATACGACATCGAAACT 59.020 33.333 8.54 0.00 43.02 2.66
2670 2853 3.181464 GCCAAGGTAGGGACTATGTCTTC 60.181 52.174 0.00 0.00 45.60 2.87
2724 2907 1.508088 CTTGTGCGGATGGAAAGGC 59.492 57.895 0.00 0.00 0.00 4.35
2750 2933 0.524862 CCTGAGAAATGCAGGCACAC 59.475 55.000 0.00 0.00 45.66 3.82
2810 2993 2.418692 CATTTGCCTTCATTGCAGCAA 58.581 42.857 11.07 11.07 43.09 3.91
2859 3042 2.028112 GTCTGATCACTGCCCTGTTACA 60.028 50.000 0.00 0.00 0.00 2.41
2869 3052 1.003233 GCCCTGTTACACTACTGGCTT 59.997 52.381 0.00 0.00 36.21 4.35
3318 3518 9.643693 CATCTTCTTTATGCCAAATTTGTACTT 57.356 29.630 16.73 9.13 0.00 2.24
3344 3544 9.474313 TTGTTATTGCTTTGAATTATACTCCCT 57.526 29.630 0.00 0.00 0.00 4.20
3345 3545 9.120538 TGTTATTGCTTTGAATTATACTCCCTC 57.879 33.333 0.00 0.00 0.00 4.30
3346 3546 8.568794 GTTATTGCTTTGAATTATACTCCCTCC 58.431 37.037 0.00 0.00 0.00 4.30
3347 3547 4.703897 TGCTTTGAATTATACTCCCTCCG 58.296 43.478 0.00 0.00 0.00 4.63
3348 3548 4.163458 TGCTTTGAATTATACTCCCTCCGT 59.837 41.667 0.00 0.00 0.00 4.69
3349 3549 4.750598 GCTTTGAATTATACTCCCTCCGTC 59.249 45.833 0.00 0.00 0.00 4.79
3350 3550 4.950205 TTGAATTATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
3351 3551 3.236896 TGAATTATACTCCCTCCGTCCC 58.763 50.000 0.00 0.00 0.00 4.46
3352 3552 3.236896 GAATTATACTCCCTCCGTCCCA 58.763 50.000 0.00 0.00 0.00 4.37
3353 3553 3.562108 ATTATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
3354 3554 4.687262 ATTATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
3355 3555 4.474303 TTATACTCCCTCCGTCCCATAA 57.526 45.455 0.00 0.00 0.00 1.90
3356 3556 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3357 3557 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3358 3558 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3359 3559 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3360 3560 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3361 3561 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3362 3562 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3363 3563 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3364 3564 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3365 3565 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3366 3566 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3367 3567 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3368 3568 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3369 3569 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3370 3570 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3371 3571 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3372 3572 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3373 3573 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3374 3574 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3375 3575 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3376 3576 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3403 3605 6.093633 GTAGAATTTTTGTCTAATCCGCAGGT 59.906 38.462 0.00 0.00 37.95 4.00
3540 3742 4.020218 ACCTTGATCTTGAACGATGGAAGA 60.020 41.667 0.00 0.00 0.00 2.87
3597 3799 5.334879 GGTGTTCTAATGTGCTTTTCATCGT 60.335 40.000 0.00 0.00 0.00 3.73
3662 3864 0.461961 AGTACATCAGAGAAGCGCCC 59.538 55.000 2.29 0.00 0.00 6.13
3681 3883 0.176680 CCGTCCCACAATCAGGAGAG 59.823 60.000 0.00 0.00 31.17 3.20
3713 3915 4.095036 GCAGTCCTGTTCTACAAATAAGCC 59.905 45.833 0.00 0.00 0.00 4.35
3718 3920 4.142381 CCTGTTCTACAAATAAGCCCAAGC 60.142 45.833 0.00 0.00 40.32 4.01
3949 4151 5.319043 TGGAAACCACTGGAGATTTACTT 57.681 39.130 0.71 0.00 0.00 2.24
3953 4155 6.371825 GGAAACCACTGGAGATTTACTTGTAG 59.628 42.308 0.71 0.00 0.00 2.74
4016 4219 5.045213 TCTCCTCTGAATCTCACTACTGTCT 60.045 44.000 0.00 0.00 0.00 3.41
4160 4363 5.221925 GCCATATATCCCTCTCCTGTCAAAA 60.222 44.000 0.00 0.00 0.00 2.44
4259 4467 5.782047 CATTGTTGCTTCCAAATGTCCTTA 58.218 37.500 0.00 0.00 31.68 2.69
4364 4572 1.539869 AGCACATCTGGGTGGGAGT 60.540 57.895 0.00 0.00 39.19 3.85
4408 4616 2.122783 GCTACACCAGCCAACCAATA 57.877 50.000 0.00 0.00 45.23 1.90
4488 4731 7.566760 TCAGTAAAATTCAAACTGAGCAGAA 57.433 32.000 4.21 0.00 43.45 3.02
4489 4732 8.169977 TCAGTAAAATTCAAACTGAGCAGAAT 57.830 30.769 4.21 0.00 43.45 2.40
4500 4743 4.903054 ACTGAGCAGAATGAATCACTTGA 58.097 39.130 4.21 0.00 39.69 3.02
4816 5065 1.814394 CAGCAGCAGCAGTATTTCCAA 59.186 47.619 3.17 0.00 45.49 3.53
4823 5072 2.097142 CAGCAGTATTTCCAAGCTCAGC 59.903 50.000 0.00 0.00 32.35 4.26
4824 5073 2.086869 GCAGTATTTCCAAGCTCAGCA 58.913 47.619 0.00 0.00 0.00 4.41
4825 5074 2.097142 GCAGTATTTCCAAGCTCAGCAG 59.903 50.000 0.00 0.00 0.00 4.24
4858 5107 2.372264 CACCAGTATTTCCAGCAGCAT 58.628 47.619 0.00 0.00 0.00 3.79
4879 5128 1.340893 CCCCAGTATTGTGTGCATCCA 60.341 52.381 0.00 0.00 0.00 3.41
4880 5129 2.445427 CCCAGTATTGTGTGCATCCAA 58.555 47.619 3.82 3.82 0.00 3.53
4975 5224 6.146673 GCAATTTAAGTTTGCTCTGAATTGCT 59.853 34.615 23.23 0.00 43.91 3.91
4976 5225 7.307573 GCAATTTAAGTTTGCTCTGAATTGCTT 60.308 33.333 23.23 0.00 43.91 3.91
5056 5305 8.296713 GCAACCAGTACAAATTGAATTCTTCTA 58.703 33.333 7.05 0.00 0.00 2.10
5126 5375 3.319755 CACATTTGGAGCAAACATGACC 58.680 45.455 0.00 0.00 36.13 4.02
5127 5376 2.299867 ACATTTGGAGCAAACATGACCC 59.700 45.455 0.00 0.00 36.13 4.46
5140 5389 3.751518 ACATGACCCAAGTACAACTTCC 58.248 45.455 0.00 0.00 36.03 3.46
5174 5423 7.798071 ACTAACTACATCGAATATTTCCCCAA 58.202 34.615 0.00 0.00 0.00 4.12
5186 5435 7.968405 CGAATATTTCCCCAACAGAGTAAAAAG 59.032 37.037 0.00 0.00 0.00 2.27
5277 5685 2.676748 TGTGTCCAAAAAGAATGGGCT 58.323 42.857 0.00 0.00 43.12 5.19
5696 6119 6.947644 AATTTTCTTGCAAAAAGGAAGCAT 57.052 29.167 0.00 0.00 44.51 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.153939 CTCTCTGGTTGACGCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
46 47 3.889196 TTGCAGACCGACATTAAACAC 57.111 42.857 0.00 0.00 0.00 3.32
57 58 2.742372 CCGTCCCTTTGCAGACCG 60.742 66.667 0.00 0.00 0.00 4.79
83 84 3.897681 TACTCTGGCACCCCGAGCA 62.898 63.158 1.73 0.00 36.12 4.26
90 91 0.984995 AAGGAACCTACTCTGGCACC 59.015 55.000 0.00 0.00 0.00 5.01
91 92 1.339151 CCAAGGAACCTACTCTGGCAC 60.339 57.143 0.00 0.00 0.00 5.01
101 102 1.898574 CGCTTGTGCCAAGGAACCT 60.899 57.895 14.32 0.00 35.36 3.50
102 103 2.644992 CGCTTGTGCCAAGGAACC 59.355 61.111 14.32 0.00 35.36 3.62
149 150 3.513515 TCTTCCGCATTAAAAAGGGCATT 59.486 39.130 0.00 0.00 0.00 3.56
150 151 3.096092 TCTTCCGCATTAAAAAGGGCAT 58.904 40.909 0.00 0.00 0.00 4.40
153 154 4.388773 GCTTTTCTTCCGCATTAAAAAGGG 59.611 41.667 7.69 0.00 37.39 3.95
169 170 2.633657 CGCTGCACACGCTTTTCT 59.366 55.556 0.00 0.00 39.64 2.52
170 171 2.427410 CCGCTGCACACGCTTTTC 60.427 61.111 0.00 0.00 39.64 2.29
171 172 3.964875 CCCGCTGCACACGCTTTT 61.965 61.111 0.00 0.00 39.64 2.27
193 194 1.803519 CGTCTTGTCAGCCGAGAGC 60.804 63.158 0.00 0.00 44.25 4.09
194 195 1.803519 GCGTCTTGTCAGCCGAGAG 60.804 63.158 0.00 0.00 34.09 3.20
195 196 1.806461 AAGCGTCTTGTCAGCCGAGA 61.806 55.000 0.00 0.00 0.00 4.04
197 198 1.372997 GAAGCGTCTTGTCAGCCGA 60.373 57.895 0.00 0.00 0.00 5.54
198 199 1.221466 TTGAAGCGTCTTGTCAGCCG 61.221 55.000 0.31 0.00 0.00 5.52
200 201 1.532868 ACATTGAAGCGTCTTGTCAGC 59.467 47.619 0.31 0.00 0.00 4.26
201 202 2.159920 CGACATTGAAGCGTCTTGTCAG 60.160 50.000 24.12 17.10 37.41 3.51
202 203 1.792367 CGACATTGAAGCGTCTTGTCA 59.208 47.619 24.12 4.03 37.41 3.58
203 204 1.126846 CCGACATTGAAGCGTCTTGTC 59.873 52.381 18.86 18.86 35.75 3.18
206 218 1.148310 CACCGACATTGAAGCGTCTT 58.852 50.000 0.31 0.00 0.00 3.01
220 232 1.235281 CGACCTCTCACTGACACCGA 61.235 60.000 0.00 0.00 0.00 4.69
221 233 1.210413 CGACCTCTCACTGACACCG 59.790 63.158 0.00 0.00 0.00 4.94
224 236 0.952280 GACACGACCTCTCACTGACA 59.048 55.000 0.00 0.00 0.00 3.58
226 238 1.239347 CAGACACGACCTCTCACTGA 58.761 55.000 0.00 0.00 0.00 3.41
248 260 0.167470 CTGCATTGAAGTCGGCACAG 59.833 55.000 0.00 0.00 32.06 3.66
250 262 0.445436 CTCTGCATTGAAGTCGGCAC 59.555 55.000 0.00 0.00 32.06 5.01
251 263 1.300971 GCTCTGCATTGAAGTCGGCA 61.301 55.000 0.00 0.00 34.66 5.69
252 264 1.427020 GCTCTGCATTGAAGTCGGC 59.573 57.895 0.00 0.00 0.00 5.54
254 266 1.629013 TACGCTCTGCATTGAAGTCG 58.371 50.000 7.27 7.27 0.00 4.18
256 268 1.734465 GCTTACGCTCTGCATTGAAGT 59.266 47.619 0.00 0.00 0.00 3.01
295 307 0.464554 CAAAATCCTCTCCCTCGCCC 60.465 60.000 0.00 0.00 0.00 6.13
298 310 2.359900 CAACCAAAATCCTCTCCCTCG 58.640 52.381 0.00 0.00 0.00 4.63
316 328 2.757894 TTCTAACAAACCTGGCCCAA 57.242 45.000 0.00 0.00 0.00 4.12
318 330 1.743394 CGATTCTAACAAACCTGGCCC 59.257 52.381 0.00 0.00 0.00 5.80
345 357 1.374758 GTGGAGTCAGAACCGCTGG 60.375 63.158 0.00 0.00 44.98 4.85
362 374 0.951558 GGAAGCAAACGGATGTGTGT 59.048 50.000 0.00 0.00 35.61 3.72
363 375 0.110238 CGGAAGCAAACGGATGTGTG 60.110 55.000 0.00 0.00 36.33 3.82
364 376 2.244000 CGGAAGCAAACGGATGTGT 58.756 52.632 0.00 0.00 0.00 3.72
371 384 2.008697 CGCAAACCGGAAGCAAACG 61.009 57.895 9.46 0.00 0.00 3.60
411 425 2.095161 GGGTCTATATCTGTTCGCGAGG 60.095 54.545 9.59 4.10 0.00 4.63
415 429 2.034305 ACACGGGTCTATATCTGTTCGC 59.966 50.000 0.00 0.00 0.00 4.70
416 430 3.984508 ACACGGGTCTATATCTGTTCG 57.015 47.619 0.00 0.00 0.00 3.95
420 434 4.560128 CATCCAACACGGGTCTATATCTG 58.440 47.826 0.00 0.00 34.36 2.90
421 435 3.578716 CCATCCAACACGGGTCTATATCT 59.421 47.826 0.00 0.00 34.36 1.98
430 444 0.319469 GTTTTGCCATCCAACACGGG 60.319 55.000 0.00 0.00 31.97 5.28
433 447 3.059166 GACATGTTTTGCCATCCAACAC 58.941 45.455 0.00 0.00 35.25 3.32
434 448 2.697229 TGACATGTTTTGCCATCCAACA 59.303 40.909 0.00 0.00 34.97 3.33
450 465 3.049674 CGCCTGCAACCGTGACAT 61.050 61.111 0.00 0.00 0.00 3.06
455 470 3.767630 AAGAACCGCCTGCAACCGT 62.768 57.895 5.15 0.00 0.00 4.83
456 471 2.966309 GAAGAACCGCCTGCAACCG 61.966 63.158 0.00 0.00 0.00 4.44
457 472 1.172812 AAGAAGAACCGCCTGCAACC 61.173 55.000 0.00 0.00 0.00 3.77
458 473 0.238553 GAAGAAGAACCGCCTGCAAC 59.761 55.000 0.00 0.00 0.00 4.17
459 474 0.108585 AGAAGAAGAACCGCCTGCAA 59.891 50.000 0.00 0.00 0.00 4.08
460 475 0.108585 AAGAAGAAGAACCGCCTGCA 59.891 50.000 0.00 0.00 0.00 4.41
462 477 2.464157 AGAAGAAGAAGAACCGCCTG 57.536 50.000 0.00 0.00 0.00 4.85
464 479 3.046968 AGAAGAAGAAGAAGAACCGCC 57.953 47.619 0.00 0.00 0.00 6.13
466 481 5.178438 CCAAGAAGAAGAAGAAGAAGAACCG 59.822 44.000 0.00 0.00 0.00 4.44
467 482 6.058833 ACCAAGAAGAAGAAGAAGAAGAACC 58.941 40.000 0.00 0.00 0.00 3.62
468 483 6.203915 GGACCAAGAAGAAGAAGAAGAAGAAC 59.796 42.308 0.00 0.00 0.00 3.01
469 484 6.100424 AGGACCAAGAAGAAGAAGAAGAAGAA 59.900 38.462 0.00 0.00 0.00 2.52
470 485 5.604650 AGGACCAAGAAGAAGAAGAAGAAGA 59.395 40.000 0.00 0.00 0.00 2.87
475 504 3.328050 GGGAGGACCAAGAAGAAGAAGAA 59.672 47.826 0.00 0.00 39.85 2.52
505 534 4.024984 TGGAGGAGGTGGAGGGGG 62.025 72.222 0.00 0.00 0.00 5.40
507 536 1.382420 CTCTGGAGGAGGTGGAGGG 60.382 68.421 0.00 0.00 38.35 4.30
508 537 2.063378 GCTCTGGAGGAGGTGGAGG 61.063 68.421 0.00 0.00 42.08 4.30
509 538 2.063378 GGCTCTGGAGGAGGTGGAG 61.063 68.421 0.00 0.00 42.08 3.86
510 539 2.039624 GGCTCTGGAGGAGGTGGA 59.960 66.667 0.00 0.00 42.08 4.02
512 541 0.690411 ATCAGGCTCTGGAGGAGGTG 60.690 60.000 0.00 0.00 42.08 4.00
513 542 0.043940 AATCAGGCTCTGGAGGAGGT 59.956 55.000 0.00 0.00 42.08 3.85
514 543 1.969923 CTAATCAGGCTCTGGAGGAGG 59.030 57.143 0.00 0.00 42.08 4.30
515 544 2.956132 TCTAATCAGGCTCTGGAGGAG 58.044 52.381 0.00 0.00 44.49 3.69
516 545 3.237746 CATCTAATCAGGCTCTGGAGGA 58.762 50.000 0.00 0.00 31.51 3.71
517 546 2.289569 GCATCTAATCAGGCTCTGGAGG 60.290 54.545 0.00 0.00 31.51 4.30
519 548 2.687297 AGCATCTAATCAGGCTCTGGA 58.313 47.619 2.86 0.00 31.51 3.86
520 549 3.139850 CAAGCATCTAATCAGGCTCTGG 58.860 50.000 2.86 0.00 35.11 3.86
522 551 2.486907 GCCAAGCATCTAATCAGGCTCT 60.487 50.000 0.00 0.00 37.67 4.09
524 553 1.813092 CGCCAAGCATCTAATCAGGCT 60.813 52.381 0.00 0.00 38.48 4.58
525 554 0.590195 CGCCAAGCATCTAATCAGGC 59.410 55.000 0.00 0.00 37.32 4.85
526 555 2.141517 CTCGCCAAGCATCTAATCAGG 58.858 52.381 0.00 0.00 0.00 3.86
581 610 2.888834 GCTCAACAAGCCCAGAAAAA 57.111 45.000 0.00 0.00 45.92 1.94
591 620 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
592 621 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
593 622 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
594 623 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
604 633 0.678048 CCAAAGGTACTGCTGAGGGC 60.678 60.000 0.00 0.00 40.86 5.19
605 634 0.984230 TCCAAAGGTACTGCTGAGGG 59.016 55.000 0.00 0.00 40.86 4.30
606 635 2.503356 AGATCCAAAGGTACTGCTGAGG 59.497 50.000 0.00 0.00 40.86 3.86
607 636 3.736433 CGAGATCCAAAGGTACTGCTGAG 60.736 52.174 0.00 0.00 40.86 3.35
608 637 2.166459 CGAGATCCAAAGGTACTGCTGA 59.834 50.000 0.00 0.00 40.86 4.26
609 638 2.544685 CGAGATCCAAAGGTACTGCTG 58.455 52.381 0.00 0.00 40.86 4.41
610 639 1.482593 CCGAGATCCAAAGGTACTGCT 59.517 52.381 0.00 0.00 40.86 4.24
611 640 1.207329 ACCGAGATCCAAAGGTACTGC 59.793 52.381 0.00 0.00 40.86 4.40
612 641 2.233922 ACACCGAGATCCAAAGGTACTG 59.766 50.000 0.00 0.00 40.86 2.74
614 643 2.028385 ACACACCGAGATCCAAAGGTAC 60.028 50.000 0.00 0.00 34.83 3.34
615 644 2.253610 ACACACCGAGATCCAAAGGTA 58.746 47.619 0.00 0.00 34.83 3.08
616 645 1.056660 ACACACCGAGATCCAAAGGT 58.943 50.000 0.00 0.00 37.49 3.50
617 646 2.185004 AACACACCGAGATCCAAAGG 57.815 50.000 0.00 0.00 0.00 3.11
618 647 4.568152 AAAAACACACCGAGATCCAAAG 57.432 40.909 0.00 0.00 0.00 2.77
636 665 6.174760 AGTACAGAACACACACACCTAAAAA 58.825 36.000 0.00 0.00 0.00 1.94
637 666 5.736813 AGTACAGAACACACACACCTAAAA 58.263 37.500 0.00 0.00 0.00 1.52
638 667 5.347620 AGTACAGAACACACACACCTAAA 57.652 39.130 0.00 0.00 0.00 1.85
639 668 5.829391 TCTAGTACAGAACACACACACCTAA 59.171 40.000 0.00 0.00 0.00 2.69
640 669 5.240183 GTCTAGTACAGAACACACACACCTA 59.760 44.000 0.00 0.00 34.17 3.08
641 670 4.037684 GTCTAGTACAGAACACACACACCT 59.962 45.833 0.00 0.00 34.17 4.00
642 671 4.296690 GTCTAGTACAGAACACACACACC 58.703 47.826 0.00 0.00 34.17 4.16
643 672 4.037684 AGGTCTAGTACAGAACACACACAC 59.962 45.833 11.36 0.00 44.17 3.82
644 673 4.212716 AGGTCTAGTACAGAACACACACA 58.787 43.478 11.36 0.00 44.17 3.72
645 674 4.850347 AGGTCTAGTACAGAACACACAC 57.150 45.455 11.36 0.00 44.17 3.82
646 675 4.647853 ACAAGGTCTAGTACAGAACACACA 59.352 41.667 11.36 0.00 44.17 3.72
647 676 5.197682 ACAAGGTCTAGTACAGAACACAC 57.802 43.478 11.36 0.00 44.17 3.82
648 677 8.683615 CATATACAAGGTCTAGTACAGAACACA 58.316 37.037 11.36 0.00 44.17 3.72
649 678 8.684520 ACATATACAAGGTCTAGTACAGAACAC 58.315 37.037 11.36 1.27 44.17 3.32
650 679 8.683615 CACATATACAAGGTCTAGTACAGAACA 58.316 37.037 11.36 0.00 44.17 3.18
651 680 8.684520 ACACATATACAAGGTCTAGTACAGAAC 58.315 37.037 0.00 0.00 41.79 3.01
652 681 8.683615 CACACATATACAAGGTCTAGTACAGAA 58.316 37.037 0.00 0.00 34.17 3.02
653 682 7.832685 ACACACATATACAAGGTCTAGTACAGA 59.167 37.037 0.00 0.00 0.00 3.41
654 683 7.915923 CACACACATATACAAGGTCTAGTACAG 59.084 40.741 0.00 0.00 0.00 2.74
655 684 7.395206 ACACACACATATACAAGGTCTAGTACA 59.605 37.037 0.00 0.00 0.00 2.90
656 685 7.769220 ACACACACATATACAAGGTCTAGTAC 58.231 38.462 0.00 0.00 0.00 2.73
657 686 7.949690 ACACACACATATACAAGGTCTAGTA 57.050 36.000 0.00 0.00 0.00 1.82
658 687 6.852420 ACACACACATATACAAGGTCTAGT 57.148 37.500 0.00 0.00 0.00 2.57
659 688 7.489435 CAGAACACACACATATACAAGGTCTAG 59.511 40.741 0.00 0.00 0.00 2.43
660 689 7.039293 ACAGAACACACACATATACAAGGTCTA 60.039 37.037 0.00 0.00 0.00 2.59
661 690 6.166279 CAGAACACACACATATACAAGGTCT 58.834 40.000 0.00 0.00 0.00 3.85
662 691 5.932303 ACAGAACACACACATATACAAGGTC 59.068 40.000 0.00 0.00 0.00 3.85
663 692 5.865085 ACAGAACACACACATATACAAGGT 58.135 37.500 0.00 0.00 0.00 3.50
664 693 7.097192 AGTACAGAACACACACATATACAAGG 58.903 38.462 0.00 0.00 0.00 3.61
665 694 9.290483 CTAGTACAGAACACACACATATACAAG 57.710 37.037 0.00 0.00 0.00 3.16
666 695 9.016438 TCTAGTACAGAACACACACATATACAA 57.984 33.333 0.00 0.00 0.00 2.41
667 696 8.456471 GTCTAGTACAGAACACACACATATACA 58.544 37.037 0.00 0.00 34.17 2.29
668 697 7.914346 GGTCTAGTACAGAACACACACATATAC 59.086 40.741 0.00 0.00 41.06 1.47
669 698 7.832685 AGGTCTAGTACAGAACACACACATATA 59.167 37.037 11.36 0.00 44.17 0.86
670 699 6.663953 AGGTCTAGTACAGAACACACACATAT 59.336 38.462 11.36 0.00 44.17 1.78
671 700 6.008331 AGGTCTAGTACAGAACACACACATA 58.992 40.000 11.36 0.00 44.17 2.29
672 701 4.833380 AGGTCTAGTACAGAACACACACAT 59.167 41.667 11.36 0.00 44.17 3.21
673 702 4.212716 AGGTCTAGTACAGAACACACACA 58.787 43.478 11.36 0.00 44.17 3.72
674 703 4.850347 AGGTCTAGTACAGAACACACAC 57.150 45.455 11.36 0.00 44.17 3.82
675 704 5.361571 TCAAAGGTCTAGTACAGAACACACA 59.638 40.000 11.36 0.00 44.17 3.72
676 705 5.839621 TCAAAGGTCTAGTACAGAACACAC 58.160 41.667 11.36 0.00 44.17 3.82
677 706 6.474140 TTCAAAGGTCTAGTACAGAACACA 57.526 37.500 11.36 0.00 44.17 3.72
678 707 6.073711 GCTTTCAAAGGTCTAGTACAGAACAC 60.074 42.308 11.36 1.27 44.17 3.32
679 708 5.989777 GCTTTCAAAGGTCTAGTACAGAACA 59.010 40.000 11.36 0.00 44.17 3.18
680 709 5.118817 CGCTTTCAAAGGTCTAGTACAGAAC 59.881 44.000 0.00 0.00 41.79 3.01
681 710 5.227908 CGCTTTCAAAGGTCTAGTACAGAA 58.772 41.667 0.00 0.00 34.17 3.02
682 711 4.321750 CCGCTTTCAAAGGTCTAGTACAGA 60.322 45.833 0.00 0.00 0.00 3.41
683 712 3.927142 CCGCTTTCAAAGGTCTAGTACAG 59.073 47.826 0.00 0.00 0.00 2.74
684 713 3.306502 CCCGCTTTCAAAGGTCTAGTACA 60.307 47.826 0.00 0.00 0.00 2.90
685 714 3.259902 CCCGCTTTCAAAGGTCTAGTAC 58.740 50.000 0.00 0.00 0.00 2.73
686 715 2.235402 CCCCGCTTTCAAAGGTCTAGTA 59.765 50.000 0.00 0.00 0.00 1.82
687 716 1.003233 CCCCGCTTTCAAAGGTCTAGT 59.997 52.381 0.00 0.00 0.00 2.57
688 717 1.739067 CCCCGCTTTCAAAGGTCTAG 58.261 55.000 0.00 0.00 0.00 2.43
689 718 0.322187 GCCCCGCTTTCAAAGGTCTA 60.322 55.000 0.00 0.00 0.00 2.59
690 719 1.603739 GCCCCGCTTTCAAAGGTCT 60.604 57.895 0.00 0.00 0.00 3.85
691 720 2.962569 GCCCCGCTTTCAAAGGTC 59.037 61.111 0.00 0.00 0.00 3.85
692 721 2.969300 TTCGCCCCGCTTTCAAAGGT 62.969 55.000 0.00 0.00 0.00 3.50
693 722 1.801309 TTTCGCCCCGCTTTCAAAGG 61.801 55.000 0.00 0.00 0.00 3.11
694 723 0.387239 CTTTCGCCCCGCTTTCAAAG 60.387 55.000 0.00 0.00 0.00 2.77
695 724 1.657556 CTTTCGCCCCGCTTTCAAA 59.342 52.632 0.00 0.00 0.00 2.69
696 725 2.914908 GCTTTCGCCCCGCTTTCAA 61.915 57.895 0.00 0.00 0.00 2.69
697 726 3.361977 GCTTTCGCCCCGCTTTCA 61.362 61.111 0.00 0.00 0.00 2.69
720 749 7.226918 TGGTGTTCGTATGTGTCTGATTAAAAA 59.773 33.333 0.00 0.00 0.00 1.94
721 750 6.706716 TGGTGTTCGTATGTGTCTGATTAAAA 59.293 34.615 0.00 0.00 0.00 1.52
722 751 6.146510 GTGGTGTTCGTATGTGTCTGATTAAA 59.853 38.462 0.00 0.00 0.00 1.52
723 752 5.636121 GTGGTGTTCGTATGTGTCTGATTAA 59.364 40.000 0.00 0.00 0.00 1.40
729 758 1.338973 ACGTGGTGTTCGTATGTGTCT 59.661 47.619 0.00 0.00 39.78 3.41
760 789 5.471116 CACGATGAGAGAGAGAGAGAATCAT 59.529 44.000 0.00 0.00 37.82 2.45
761 790 4.815846 CACGATGAGAGAGAGAGAGAATCA 59.184 45.833 0.00 0.00 37.82 2.57
762 791 4.319766 GCACGATGAGAGAGAGAGAGAATC 60.320 50.000 0.00 0.00 0.00 2.52
763 792 3.565482 GCACGATGAGAGAGAGAGAGAAT 59.435 47.826 0.00 0.00 0.00 2.40
764 793 2.942376 GCACGATGAGAGAGAGAGAGAA 59.058 50.000 0.00 0.00 0.00 2.87
765 794 2.170397 AGCACGATGAGAGAGAGAGAGA 59.830 50.000 0.00 0.00 0.00 3.10
766 795 2.545526 GAGCACGATGAGAGAGAGAGAG 59.454 54.545 0.00 0.00 0.00 3.20
867 902 1.402194 CGCGCTAATTTTGGCAAAGGA 60.402 47.619 13.04 0.00 33.91 3.36
868 906 0.991344 CGCGCTAATTTTGGCAAAGG 59.009 50.000 13.04 6.39 33.91 3.11
919 957 4.645252 TGGGGGTGGGGGAATGGT 62.645 66.667 0.00 0.00 0.00 3.55
993 1085 2.671070 CACGACCCCATCAGGCTT 59.329 61.111 0.00 0.00 0.00 4.35
1147 1259 4.600692 TCACACATCGATTATGGTAGGG 57.399 45.455 10.42 0.00 40.16 3.53
1180 1292 1.035139 CTGTCAAACCCAAGCAAGCT 58.965 50.000 0.00 0.00 0.00 3.74
1293 1414 3.554731 CCGTCCTAAATTTTCTAGGCGAC 59.445 47.826 16.88 5.91 37.83 5.19
1336 1459 2.673200 GGCTCACATGAGGGCTCCA 61.673 63.158 14.91 0.00 42.29 3.86
1347 1470 1.978455 AACTGTTCACCGGGCTCACA 61.978 55.000 6.32 1.82 0.00 3.58
1348 1471 0.034337 TAACTGTTCACCGGGCTCAC 59.966 55.000 6.32 0.00 0.00 3.51
1351 1474 1.373812 GGTAACTGTTCACCGGGCT 59.626 57.895 6.32 0.00 0.00 5.19
1423 1546 0.894835 TCACGCACAGGAGCATCTTA 59.105 50.000 0.00 0.00 33.73 2.10
1444 1567 4.111916 ACTTCACAAAATTTTGCACGGAG 58.888 39.130 26.94 21.09 41.79 4.63
1499 1622 2.602217 GCACTGTTCACGCCTACTTTTG 60.602 50.000 0.00 0.00 0.00 2.44
1504 1627 1.219522 AACGCACTGTTCACGCCTAC 61.220 55.000 0.00 0.00 35.27 3.18
1505 1628 0.531090 AAACGCACTGTTCACGCCTA 60.531 50.000 0.00 0.00 40.84 3.93
1510 1633 4.894798 TTTTGAAAAACGCACTGTTCAC 57.105 36.364 0.00 0.00 40.84 3.18
1533 1656 4.381932 GGGCAAATTTCGGATGTCTGAATT 60.382 41.667 5.19 0.00 40.57 2.17
1534 1657 3.131046 GGGCAAATTTCGGATGTCTGAAT 59.869 43.478 5.19 0.00 40.57 2.57
1536 1659 2.091541 GGGCAAATTTCGGATGTCTGA 58.908 47.619 0.00 0.00 0.00 3.27
1537 1660 2.094675 AGGGCAAATTTCGGATGTCTG 58.905 47.619 0.00 0.00 0.00 3.51
1538 1661 2.514458 AGGGCAAATTTCGGATGTCT 57.486 45.000 0.00 0.00 0.00 3.41
1539 1662 3.592898 AAAGGGCAAATTTCGGATGTC 57.407 42.857 0.00 0.00 0.00 3.06
1545 1669 3.359580 CGTCGTAAAAAGGGCAAATTTCG 59.640 43.478 0.00 0.00 0.00 3.46
1572 1696 6.429791 TTTGTGAAGTTTGAACATTCGAGA 57.570 33.333 0.00 0.00 0.00 4.04
1574 1698 8.472683 AAATTTTGTGAAGTTTGAACATTCGA 57.527 26.923 0.00 0.00 0.00 3.71
1606 1730 2.479566 AGATAGGCCTGTGTGTGTTG 57.520 50.000 17.99 0.00 0.00 3.33
1608 1732 1.611673 GCAAGATAGGCCTGTGTGTGT 60.612 52.381 17.99 0.00 0.00 3.72
1609 1733 1.089920 GCAAGATAGGCCTGTGTGTG 58.910 55.000 17.99 9.70 0.00 3.82
1612 1738 0.035056 GGTGCAAGATAGGCCTGTGT 60.035 55.000 17.99 3.72 0.00 3.72
1619 1745 8.034215 TCAATTTTTATTGTGGTGCAAGATAGG 58.966 33.333 0.00 0.00 40.86 2.57
1620 1746 8.984891 TCAATTTTTATTGTGGTGCAAGATAG 57.015 30.769 0.00 0.00 40.86 2.08
1621 1747 9.770097 TTTCAATTTTTATTGTGGTGCAAGATA 57.230 25.926 0.00 0.00 40.86 1.98
1664 1790 9.702726 CATGAACAGTACCGTGATTTAAAATAG 57.297 33.333 0.00 0.00 0.00 1.73
1665 1791 8.178964 GCATGAACAGTACCGTGATTTAAAATA 58.821 33.333 0.00 0.00 0.00 1.40
1666 1792 7.027161 GCATGAACAGTACCGTGATTTAAAAT 58.973 34.615 0.00 0.00 0.00 1.82
1677 1803 0.249120 TCTGGGCATGAACAGTACCG 59.751 55.000 14.32 0.00 36.17 4.02
1682 1808 2.093075 AGATGAGTCTGGGCATGAACAG 60.093 50.000 9.96 9.96 32.13 3.16
1694 1820 1.760086 CCCGGGCTCAGATGAGTCT 60.760 63.158 8.08 0.00 45.60 3.24
1696 1822 3.474570 GCCCGGGCTCAGATGAGT 61.475 66.667 38.76 0.00 43.85 3.41
1722 1848 1.136500 GAAGATAAACCGGAGAGCGGT 59.864 52.381 9.46 0.00 42.14 5.68
1782 1908 2.406616 CCGAACAGGCCCGAAATGG 61.407 63.158 0.00 0.00 37.55 3.16
1790 1916 0.673956 GGAGAGAAACCGAACAGGCC 60.674 60.000 0.00 0.00 46.52 5.19
1791 1917 2.842320 GGAGAGAAACCGAACAGGC 58.158 57.895 0.00 0.00 46.52 4.85
1799 1925 1.079057 GTGGGAGCGGAGAGAAACC 60.079 63.158 0.00 0.00 0.00 3.27
1800 1926 1.446272 CGTGGGAGCGGAGAGAAAC 60.446 63.158 0.00 0.00 0.00 2.78
1801 1927 1.605451 TCGTGGGAGCGGAGAGAAA 60.605 57.895 0.00 0.00 0.00 2.52
1802 1928 2.035155 TCGTGGGAGCGGAGAGAA 59.965 61.111 0.00 0.00 0.00 2.87
1803 1929 2.750637 GTCGTGGGAGCGGAGAGA 60.751 66.667 0.00 0.00 0.00 3.10
1804 1930 2.752238 AGTCGTGGGAGCGGAGAG 60.752 66.667 0.00 0.00 0.00 3.20
1805 1931 2.750637 GAGTCGTGGGAGCGGAGA 60.751 66.667 0.00 0.00 0.00 3.71
1806 1932 3.057547 CTGAGTCGTGGGAGCGGAG 62.058 68.421 0.00 0.00 0.00 4.63
1807 1933 3.062466 CTGAGTCGTGGGAGCGGA 61.062 66.667 0.00 0.00 0.00 5.54
1808 1934 4.803426 GCTGAGTCGTGGGAGCGG 62.803 72.222 0.00 0.00 0.00 5.52
1809 1935 3.691744 GAGCTGAGTCGTGGGAGCG 62.692 68.421 0.00 0.00 36.52 5.03
1810 1936 2.183046 GAGCTGAGTCGTGGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
1811 1937 2.716017 GGGAGCTGAGTCGTGGGAG 61.716 68.421 0.00 0.00 0.00 4.30
1812 1938 2.680352 GGGAGCTGAGTCGTGGGA 60.680 66.667 0.00 0.00 0.00 4.37
1813 1939 4.135153 CGGGAGCTGAGTCGTGGG 62.135 72.222 0.00 0.00 0.00 4.61
1814 1940 4.135153 CCGGGAGCTGAGTCGTGG 62.135 72.222 0.00 0.00 0.00 4.94
1815 1941 3.057547 CTCCGGGAGCTGAGTCGTG 62.058 68.421 11.83 0.00 0.00 4.35
1816 1942 2.752238 CTCCGGGAGCTGAGTCGT 60.752 66.667 11.83 0.00 0.00 4.34
1829 1955 4.749310 ACAGCTTGCTCCGCTCCG 62.749 66.667 0.00 0.00 35.07 4.63
1830 1956 2.359230 AACAGCTTGCTCCGCTCC 60.359 61.111 0.00 0.00 35.07 4.70
1831 1957 2.866028 CAACAGCTTGCTCCGCTC 59.134 61.111 0.00 0.00 35.07 5.03
1843 1969 2.290641 ACTCCGTAAAAAGCTGCAACAG 59.709 45.455 1.02 0.00 34.12 3.16
1844 1970 2.294074 ACTCCGTAAAAAGCTGCAACA 58.706 42.857 1.02 0.00 0.00 3.33
1845 1971 3.667166 GCTACTCCGTAAAAAGCTGCAAC 60.667 47.826 1.02 0.00 0.00 4.17
1846 1972 2.482721 GCTACTCCGTAAAAAGCTGCAA 59.517 45.455 1.02 0.00 0.00 4.08
1847 1973 2.073816 GCTACTCCGTAAAAAGCTGCA 58.926 47.619 1.02 0.00 0.00 4.41
1848 1974 2.347731 AGCTACTCCGTAAAAAGCTGC 58.652 47.619 0.00 0.00 41.78 5.25
1849 1975 3.585862 TGAGCTACTCCGTAAAAAGCTG 58.414 45.455 0.00 0.00 43.31 4.24
1850 1976 3.955650 TGAGCTACTCCGTAAAAAGCT 57.044 42.857 0.00 0.00 45.82 3.74
1851 1977 4.378149 GGTTTGAGCTACTCCGTAAAAAGC 60.378 45.833 0.00 0.00 0.00 3.51
1852 1978 4.143179 CGGTTTGAGCTACTCCGTAAAAAG 60.143 45.833 9.83 0.00 36.99 2.27
1853 1979 3.742369 CGGTTTGAGCTACTCCGTAAAAA 59.258 43.478 9.83 0.00 36.99 1.94
1854 1980 3.005684 TCGGTTTGAGCTACTCCGTAAAA 59.994 43.478 15.21 0.00 41.58 1.52
1855 1981 2.557924 TCGGTTTGAGCTACTCCGTAAA 59.442 45.455 15.21 0.00 41.58 2.01
1856 1982 2.161855 TCGGTTTGAGCTACTCCGTAA 58.838 47.619 15.21 0.00 41.58 3.18
1857 1983 1.741706 CTCGGTTTGAGCTACTCCGTA 59.258 52.381 15.21 5.57 41.58 4.02
1858 1984 0.526662 CTCGGTTTGAGCTACTCCGT 59.473 55.000 15.21 0.00 41.58 4.69
1859 1985 3.330766 CTCGGTTTGAGCTACTCCG 57.669 57.895 11.25 11.25 38.03 4.63
1884 2010 4.373116 TCCACTCCGCTCAACGCC 62.373 66.667 0.00 0.00 41.76 5.68
1885 2011 2.811317 CTCCACTCCGCTCAACGC 60.811 66.667 0.00 0.00 41.76 4.84
1886 2012 1.153939 CTCTCCACTCCGCTCAACG 60.154 63.158 0.00 0.00 43.15 4.10
1887 2013 0.603569 TTCTCTCCACTCCGCTCAAC 59.396 55.000 0.00 0.00 0.00 3.18
1888 2014 1.000955 GTTTCTCTCCACTCCGCTCAA 59.999 52.381 0.00 0.00 0.00 3.02
1889 2015 0.603569 GTTTCTCTCCACTCCGCTCA 59.396 55.000 0.00 0.00 0.00 4.26
1890 2016 0.108567 GGTTTCTCTCCACTCCGCTC 60.109 60.000 0.00 0.00 0.00 5.03
1891 2017 1.878656 CGGTTTCTCTCCACTCCGCT 61.879 60.000 0.00 0.00 0.00 5.52
1892 2018 1.446272 CGGTTTCTCTCCACTCCGC 60.446 63.158 0.00 0.00 0.00 5.54
1893 2019 0.601558 TTCGGTTTCTCTCCACTCCG 59.398 55.000 0.00 0.00 39.40 4.63
1894 2020 1.669211 CGTTCGGTTTCTCTCCACTCC 60.669 57.143 0.00 0.00 0.00 3.85
1895 2021 1.669211 CCGTTCGGTTTCTCTCCACTC 60.669 57.143 2.82 0.00 0.00 3.51
1896 2022 0.317479 CCGTTCGGTTTCTCTCCACT 59.683 55.000 2.82 0.00 0.00 4.00
1897 2023 0.033090 ACCGTTCGGTTTCTCTCCAC 59.967 55.000 11.27 0.00 34.35 4.02
1898 2024 0.032952 CACCGTTCGGTTTCTCTCCA 59.967 55.000 14.42 0.00 36.17 3.86
1899 2025 1.289800 GCACCGTTCGGTTTCTCTCC 61.290 60.000 14.42 0.00 36.17 3.71
1900 2026 1.289800 GGCACCGTTCGGTTTCTCTC 61.290 60.000 14.42 0.66 36.17 3.20
1901 2027 1.301479 GGCACCGTTCGGTTTCTCT 60.301 57.895 14.42 0.00 36.17 3.10
1902 2028 0.883370 AAGGCACCGTTCGGTTTCTC 60.883 55.000 14.42 4.85 36.17 2.87
1903 2029 0.883370 GAAGGCACCGTTCGGTTTCT 60.883 55.000 14.42 11.43 36.17 2.52
1904 2030 1.572941 GAAGGCACCGTTCGGTTTC 59.427 57.895 14.42 11.94 36.17 2.78
1905 2031 2.248835 CGAAGGCACCGTTCGGTTT 61.249 57.895 14.42 6.82 42.47 3.27
1906 2032 2.663852 CGAAGGCACCGTTCGGTT 60.664 61.111 14.42 0.00 42.47 4.44
1910 2036 2.087009 CGAGACGAAGGCACCGTTC 61.087 63.158 5.71 5.23 40.67 3.95
1911 2037 2.049433 CGAGACGAAGGCACCGTT 60.049 61.111 5.71 0.00 40.67 4.44
1912 2038 4.719369 GCGAGACGAAGGCACCGT 62.719 66.667 3.93 3.93 43.56 4.83
1913 2039 3.989698 ATGCGAGACGAAGGCACCG 62.990 63.158 0.00 0.00 39.84 4.94
1914 2040 1.741770 AATGCGAGACGAAGGCACC 60.742 57.895 0.00 0.00 39.84 5.01
1915 2041 1.291877 ACAATGCGAGACGAAGGCAC 61.292 55.000 0.00 0.00 39.84 5.01
1916 2042 0.602638 AACAATGCGAGACGAAGGCA 60.603 50.000 0.00 0.00 41.48 4.75
1917 2043 0.179215 CAACAATGCGAGACGAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
1918 2044 0.179215 GCAACAATGCGAGACGAAGG 60.179 55.000 0.00 0.00 43.83 3.46
1919 2045 3.280532 GCAACAATGCGAGACGAAG 57.719 52.632 0.00 0.00 43.83 3.79
1939 2065 7.710896 AGCTTACAAGATGCCAAGAATATTTC 58.289 34.615 0.00 0.00 0.00 2.17
1963 2089 0.729116 ATGCGAGACGAAATGGCAAG 59.271 50.000 0.00 0.00 34.97 4.01
1964 2090 1.135717 CAATGCGAGACGAAATGGCAA 60.136 47.619 0.00 0.00 34.97 4.52
2034 2160 3.139029 GGCGTATATGCAGTAGGCC 57.861 57.895 22.10 22.10 43.31 5.19
2135 2309 9.871175 ATGGTTTTTCTAACCTAAACCTTAGAA 57.129 29.630 14.78 0.00 46.91 2.10
2138 2312 8.999905 ACATGGTTTTTCTAACCTAAACCTTA 57.000 30.769 14.78 0.00 46.91 2.69
2139 2313 7.907841 ACATGGTTTTTCTAACCTAAACCTT 57.092 32.000 14.78 7.71 46.91 3.50
2140 2314 7.907841 AACATGGTTTTTCTAACCTAAACCT 57.092 32.000 14.78 1.51 46.91 3.50
2144 2318 9.856162 ACTAGAAACATGGTTTTTCTAACCTAA 57.144 29.630 14.47 0.00 42.34 2.69
2170 2347 4.997395 GTGGTTAATGAGCTGACAAGAAGA 59.003 41.667 0.00 0.00 0.00 2.87
2177 2354 5.643777 ACAATGTAGTGGTTAATGAGCTGAC 59.356 40.000 0.00 0.00 0.00 3.51
2183 2360 6.127758 GGCATGAACAATGTAGTGGTTAATGA 60.128 38.462 0.00 0.00 36.06 2.57
2191 2368 4.637091 TGAGATGGCATGAACAATGTAGTG 59.363 41.667 3.81 0.00 38.65 2.74
2195 2372 4.464951 ACAATGAGATGGCATGAACAATGT 59.535 37.500 3.81 8.65 38.65 2.71
2213 2390 3.181530 CGTCTTCAAAGCGACCTACAATG 60.182 47.826 0.00 0.00 0.00 2.82
2223 2400 3.673338 TCACTATCAACGTCTTCAAAGCG 59.327 43.478 0.00 5.46 0.00 4.68
2226 2403 7.149307 TGTGTATCACTATCAACGTCTTCAAA 58.851 34.615 0.00 0.00 35.11 2.69
2384 2561 1.429463 CGTGTTCTCGGGAGGAAAAG 58.571 55.000 0.00 0.00 0.00 2.27
2385 2562 0.034337 CCGTGTTCTCGGGAGGAAAA 59.966 55.000 5.55 0.00 45.88 2.29
2386 2563 1.669440 CCGTGTTCTCGGGAGGAAA 59.331 57.895 5.55 0.00 45.88 3.13
2395 2572 4.606961 TGCAAATCTTTTTCCGTGTTCTC 58.393 39.130 0.00 0.00 0.00 2.87
2402 2579 5.064441 AGGATCTTGCAAATCTTTTTCCG 57.936 39.130 16.14 0.00 0.00 4.30
2467 2650 4.273480 CGCCATTTCTACCGATCAAGAATT 59.727 41.667 0.00 0.00 32.05 2.17
2581 2764 8.475639 TCGTATTTTAGATTCCTAAAGCACTCT 58.524 33.333 0.00 0.00 43.43 3.24
2617 2800 1.952990 GGAGATCTCATCAGACGCTCA 59.047 52.381 23.85 0.00 36.08 4.26
2670 2853 3.869272 GCCGCCACGATTGCTGAG 61.869 66.667 0.00 0.00 0.00 3.35
2750 2933 0.737715 GCAGCGTCCTGGTTCTACTG 60.738 60.000 0.00 0.00 39.54 2.74
2810 2993 1.211457 CCCATAAGCCTGAAGAGCAGT 59.789 52.381 0.00 0.00 43.33 4.40
2859 3042 4.423625 AACAGTTCTCAAAGCCAGTAGT 57.576 40.909 0.00 0.00 0.00 2.73
2869 3052 7.931407 TGAATTCAGCTAGTAAACAGTTCTCAA 59.069 33.333 3.38 0.00 0.00 3.02
3318 3518 9.474313 AGGGAGTATAATTCAAAGCAATAACAA 57.526 29.630 0.00 0.00 0.00 2.83
3336 3536 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
3339 3539 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3340 3540 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3341 3541 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3342 3542 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3343 3543 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3344 3544 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3345 3545 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3346 3546 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3347 3547 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3348 3548 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3349 3549 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
3350 3550 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
3353 3553 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
3354 3554 8.773404 ACTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
3355 3555 9.517609 CTACTAGTGTCAAAAACGCTCTTATAT 57.482 33.333 5.39 0.00 45.69 0.86
3356 3556 8.733458 TCTACTAGTGTCAAAAACGCTCTTATA 58.267 33.333 5.39 0.00 45.69 0.98
3357 3557 7.600065 TCTACTAGTGTCAAAAACGCTCTTAT 58.400 34.615 5.39 0.00 45.69 1.73
3358 3558 6.973843 TCTACTAGTGTCAAAAACGCTCTTA 58.026 36.000 5.39 0.00 45.69 2.10
3359 3559 5.839621 TCTACTAGTGTCAAAAACGCTCTT 58.160 37.500 5.39 0.00 45.69 2.85
3360 3560 5.449107 TCTACTAGTGTCAAAAACGCTCT 57.551 39.130 5.39 0.00 45.69 4.09
3361 3561 6.707599 ATTCTACTAGTGTCAAAAACGCTC 57.292 37.500 5.39 0.00 45.69 5.03
3363 3563 8.469125 CAAAAATTCTACTAGTGTCAAAAACGC 58.531 33.333 5.39 0.00 38.74 4.84
3364 3564 9.498307 ACAAAAATTCTACTAGTGTCAAAAACG 57.502 29.630 5.39 0.00 0.00 3.60
3372 3572 9.367444 CGGATTAGACAAAAATTCTACTAGTGT 57.633 33.333 5.39 0.00 0.00 3.55
3373 3573 8.328864 GCGGATTAGACAAAAATTCTACTAGTG 58.671 37.037 5.39 0.00 0.00 2.74
3374 3574 8.038944 TGCGGATTAGACAAAAATTCTACTAGT 58.961 33.333 0.00 0.00 0.00 2.57
3375 3575 8.420374 TGCGGATTAGACAAAAATTCTACTAG 57.580 34.615 0.00 0.00 0.00 2.57
3376 3576 7.494625 CCTGCGGATTAGACAAAAATTCTACTA 59.505 37.037 0.00 0.00 0.00 1.82
3377 3577 6.316390 CCTGCGGATTAGACAAAAATTCTACT 59.684 38.462 0.00 0.00 0.00 2.57
3378 3578 6.093633 ACCTGCGGATTAGACAAAAATTCTAC 59.906 38.462 0.00 0.00 0.00 2.59
3403 3605 7.499321 TCGTAAAAATCAGCAAGGTTTTCTA 57.501 32.000 1.33 0.00 0.00 2.10
3597 3799 1.533625 GGTGGCTGTAGAACATTGCA 58.466 50.000 0.00 0.00 0.00 4.08
3662 3864 0.176680 CTCTCCTGATTGTGGGACGG 59.823 60.000 0.00 0.00 0.00 4.79
3681 3883 0.179045 AACAGGACTGCACTCACCAC 60.179 55.000 0.00 0.00 0.00 4.16
3713 3915 3.259425 GAACTGCTGTGGCGCTTGG 62.259 63.158 7.64 0.00 42.25 3.61
3974 4176 3.256558 GAGATGAACAAAAATGGGCTGC 58.743 45.455 0.00 0.00 0.00 5.25
3985 4188 5.483231 AGTGAGATTCAGAGGAGATGAACAA 59.517 40.000 0.00 0.00 39.36 2.83
4016 4219 2.914695 AAAGCATGCAAGCAGGAAAA 57.085 40.000 21.98 0.00 36.85 2.29
4246 4454 8.146053 TGATACTTTCTCTAAGGACATTTGGA 57.854 34.615 0.00 0.00 38.23 3.53
4255 4463 9.474920 GAACATCTGATGATACTTTCTCTAAGG 57.525 37.037 23.59 0.00 38.23 2.69
4259 4467 9.956640 AAAAGAACATCTGATGATACTTTCTCT 57.043 29.630 23.59 6.34 33.37 3.10
4364 4572 3.240134 GAGCAGTGACGAGGGCCAA 62.240 63.158 6.18 0.00 0.00 4.52
4424 4632 5.496330 CTAACTAGCAACGGTATTATGCG 57.504 43.478 0.00 0.00 44.60 4.73
4455 4663 9.370126 CAGTTTGAATTTTACTGAGTTCTAACG 57.630 33.333 8.89 0.00 41.33 3.18
4483 4726 7.148689 GGAAAATGTTCAAGTGATTCATTCTGC 60.149 37.037 0.00 2.75 35.25 4.26
4486 4729 8.767478 ATGGAAAATGTTCAAGTGATTCATTC 57.233 30.769 0.00 3.89 35.25 2.67
4487 4730 8.591072 AGATGGAAAATGTTCAAGTGATTCATT 58.409 29.630 0.00 6.48 35.25 2.57
4488 4731 8.033038 CAGATGGAAAATGTTCAAGTGATTCAT 58.967 33.333 0.00 0.00 35.25 2.57
4489 4732 7.231115 TCAGATGGAAAATGTTCAAGTGATTCA 59.769 33.333 0.00 0.00 35.25 2.57
4500 4743 6.438425 AGCCTGTTAATCAGATGGAAAATGTT 59.562 34.615 6.62 0.00 46.27 2.71
4689 4932 2.036098 TCACCATTGCCAGCTGGG 59.964 61.111 33.46 18.83 36.82 4.45
4771 5014 0.819666 GCTGGGGCTGGTAGTATTGC 60.820 60.000 0.00 0.00 35.22 3.56
4816 5065 0.816018 GATGCTGATGCTGCTGAGCT 60.816 55.000 5.83 0.00 46.39 4.09
4823 5072 1.029947 TGGTGCTGATGCTGATGCTG 61.030 55.000 0.00 0.00 40.48 4.41
4824 5073 0.748367 CTGGTGCTGATGCTGATGCT 60.748 55.000 0.00 0.00 40.48 3.79
4825 5074 1.030488 ACTGGTGCTGATGCTGATGC 61.030 55.000 0.00 0.00 40.48 3.91
4826 5075 2.320745 TACTGGTGCTGATGCTGATG 57.679 50.000 0.00 0.00 40.48 3.07
4827 5076 3.572632 AATACTGGTGCTGATGCTGAT 57.427 42.857 0.00 0.00 40.48 2.90
4828 5077 3.273434 GAAATACTGGTGCTGATGCTGA 58.727 45.455 0.00 0.00 40.48 4.26
4858 5107 1.064758 GGATGCACACAATACTGGGGA 60.065 52.381 0.00 0.00 0.00 4.81
4975 5224 1.704628 TGAGATCAGAAACAGGGCCAA 59.295 47.619 6.18 0.00 0.00 4.52
4976 5225 1.280133 CTGAGATCAGAAACAGGGCCA 59.720 52.381 6.18 0.00 46.59 5.36
5056 5305 7.175104 ACAACTGTACATCATCTTAACCCAAT 58.825 34.615 0.00 0.00 0.00 3.16
5087 5336 4.032960 TGTGGATATTGCAAAGGTCAGT 57.967 40.909 1.71 0.00 0.00 3.41
5161 5410 9.020731 TCTTTTTACTCTGTTGGGGAAATATTC 57.979 33.333 0.00 0.00 0.00 1.75
5186 5435 6.238759 GCCCACATGTTTATATTTCTGACCTC 60.239 42.308 0.00 0.00 0.00 3.85
5208 5616 1.200948 CTAGCTTGCTCAGTTTTGCCC 59.799 52.381 0.00 0.00 0.00 5.36
5277 5685 2.438411 ACAGGGTTTTTGTCACGTTCA 58.562 42.857 0.00 0.00 0.00 3.18
5696 6119 3.830744 TTGAACGGAAGAAAGAGACCA 57.169 42.857 0.00 0.00 0.00 4.02
5861 6284 8.035984 TGGACATTAAGATATTGTGTTCGTGTA 58.964 33.333 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.