Multiple sequence alignment - TraesCS6D01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G142800 chr6D 100.000 2802 0 0 2731 5532 113462134 113464935 0.000000e+00 5175.0
1 TraesCS6D01G142800 chr6D 100.000 2528 0 0 1 2528 113459404 113461931 0.000000e+00 4669.0
2 TraesCS6D01G142800 chr6D 93.935 676 18 8 1309 1961 178003277 178002602 0.000000e+00 1000.0
3 TraesCS6D01G142800 chr6D 96.690 574 18 1 1389 1961 76002764 76002191 0.000000e+00 953.0
4 TraesCS6D01G142800 chr6D 93.993 283 1 1 3088 3354 113460711 113460993 1.110000e-111 414.0
5 TraesCS6D01G142800 chr6D 93.993 283 1 1 1308 1590 113462491 113462757 1.110000e-111 414.0
6 TraesCS6D01G142800 chr6D 97.826 184 4 0 3174 3357 76002743 76002560 8.940000e-83 318.0
7 TraesCS6D01G142800 chr6D 96.825 189 6 0 3169 3357 178003159 178002971 3.220000e-82 316.0
8 TraesCS6D01G142800 chr6D 89.147 258 9 6 1308 1546 138812653 138812396 2.500000e-78 303.0
9 TraesCS6D01G142800 chr6D 90.541 222 16 5 1371 1590 442482805 442482587 7.010000e-74 289.0
10 TraesCS6D01G142800 chr6D 96.094 128 5 0 4722 4849 299194207 299194080 5.620000e-50 209.0
11 TraesCS6D01G142800 chr6A 95.510 1381 38 10 3351 4718 141295401 141296770 0.000000e+00 2185.0
12 TraesCS6D01G142800 chr6A 92.969 1337 56 14 1 1309 141294083 141295409 0.000000e+00 1914.0
13 TraesCS6D01G142800 chr6A 95.645 574 24 1 1389 1961 190604601 190605174 0.000000e+00 920.0
14 TraesCS6D01G142800 chr6A 93.970 597 16 3 1951 2528 100317451 100316856 0.000000e+00 885.0
15 TraesCS6D01G142800 chr6A 93.300 597 21 7 1951 2528 309874000 309873404 0.000000e+00 863.0
16 TraesCS6D01G142800 chr6A 89.867 375 23 12 4848 5214 141296772 141297139 8.390000e-128 468.0
17 TraesCS6D01G142800 chr6A 89.297 327 20 6 5220 5532 141297191 141297516 4.020000e-106 396.0
18 TraesCS6D01G142800 chr6A 97.790 181 4 0 3174 3354 190604622 190604802 4.160000e-81 313.0
19 TraesCS6D01G142800 chr6A 88.839 224 22 2 1326 1546 366032779 366033002 7.060000e-69 272.0
20 TraesCS6D01G142800 chr6A 92.982 57 2 1 4610 4664 141296606 141296662 1.280000e-11 82.4
21 TraesCS6D01G142800 chr6B 95.063 1357 35 12 3351 4696 202543539 202544874 0.000000e+00 2106.0
22 TraesCS6D01G142800 chr6B 91.673 1345 61 22 1 1309 202542218 202543547 0.000000e+00 1816.0
23 TraesCS6D01G142800 chr6B 86.828 372 17 11 4848 5218 202544876 202545216 2.420000e-103 387.0
24 TraesCS6D01G142800 chr6B 90.033 301 16 7 5220 5512 202545265 202545559 1.450000e-100 377.0
25 TraesCS6D01G142800 chr3D 93.501 677 21 8 1308 1961 121799396 121798720 0.000000e+00 985.0
26 TraesCS6D01G142800 chr3D 95.993 574 21 2 1389 1961 574778380 574777808 0.000000e+00 931.0
27 TraesCS6D01G142800 chr3D 94.828 580 11 2 1951 2511 121731101 121730522 0.000000e+00 887.0
28 TraesCS6D01G142800 chr3D 93.970 597 17 2 1951 2528 648441 647845 0.000000e+00 885.0
29 TraesCS6D01G142800 chr3D 93.802 597 18 2 1951 2528 134500191 134500787 0.000000e+00 880.0
30 TraesCS6D01G142800 chr3D 94.493 454 24 1 2731 3184 647250 646798 0.000000e+00 699.0
31 TraesCS6D01G142800 chr3D 90.492 305 7 4 1308 1590 236670541 236670845 3.130000e-102 383.0
32 TraesCS6D01G142800 chr3D 88.341 223 21 5 1371 1591 456572258 456572477 4.250000e-66 263.0
33 TraesCS6D01G142800 chr3D 89.305 187 15 5 1371 1555 67014488 67014305 4.310000e-56 230.0
34 TraesCS6D01G142800 chr3D 95.522 134 5 1 4716 4849 250932426 250932558 4.340000e-51 213.0
35 TraesCS6D01G142800 chr3D 93.985 133 8 0 4721 4853 448736471 448736603 9.400000e-48 202.0
36 TraesCS6D01G142800 chr3D 96.907 97 2 1 1308 1404 313895962 313895867 1.590000e-35 161.0
37 TraesCS6D01G142800 chr7D 97.178 567 13 2 1398 1961 110571210 110570644 0.000000e+00 955.0
38 TraesCS6D01G142800 chr7D 96.035 454 17 1 2731 3184 310994988 310995440 0.000000e+00 737.0
39 TraesCS6D01G142800 chr7D 88.372 258 10 6 1308 1546 431883289 431883545 5.420000e-75 292.0
40 TraesCS6D01G142800 chr7D 92.857 168 11 1 1378 1545 521575804 521575970 5.540000e-60 243.0
41 TraesCS6D01G142800 chr7D 93.985 133 7 1 4722 4854 501787718 501787587 3.380000e-47 200.0
42 TraesCS6D01G142800 chr3A 96.113 566 21 1 1397 1961 675345781 675346346 0.000000e+00 922.0
43 TraesCS6D01G142800 chr3A 91.938 583 43 4 2778 3358 545903626 545903046 0.000000e+00 813.0
44 TraesCS6D01G142800 chr7A 96.113 566 19 3 1398 1961 519097651 519097087 0.000000e+00 920.0
45 TraesCS6D01G142800 chr7A 93.109 595 34 2 2754 3348 200899369 200899956 0.000000e+00 865.0
46 TraesCS6D01G142800 chr7A 97.312 186 5 0 3169 3354 696025986 696026171 3.220000e-82 316.0
47 TraesCS6D01G142800 chr4A 95.296 574 26 1 1389 1961 86286732 86287305 0.000000e+00 909.0
48 TraesCS6D01G142800 chr2D 94.649 598 12 3 1951 2528 392699042 392698445 0.000000e+00 909.0
49 TraesCS6D01G142800 chr2D 94.137 597 16 2 1951 2528 99211697 99211101 0.000000e+00 891.0
50 TraesCS6D01G142800 chr2D 94.934 454 22 1 2731 3184 186637466 186637014 0.000000e+00 710.0
51 TraesCS6D01G142800 chr2D 94.714 454 22 2 2731 3184 209029971 209029520 0.000000e+00 704.0
52 TraesCS6D01G142800 chr2D 89.305 187 15 5 1371 1555 94443824 94444007 4.310000e-56 230.0
53 TraesCS6D01G142800 chr4D 94.305 597 15 2 1951 2528 301752180 301751584 0.000000e+00 896.0
54 TraesCS6D01G142800 chr4D 93.802 597 18 2 1951 2528 479965807 479965211 0.000000e+00 880.0
55 TraesCS6D01G142800 chr4D 92.965 597 22 9 1951 2528 432423618 432423023 0.000000e+00 852.0
56 TraesCS6D01G142800 chr4D 95.154 454 21 1 2731 3184 57481265 57480813 0.000000e+00 715.0
57 TraesCS6D01G142800 chr1D 93.980 598 16 3 1951 2528 326150561 326151158 0.000000e+00 887.0
58 TraesCS6D01G142800 chr1D 93.970 597 17 8 1951 2528 108259831 108259235 0.000000e+00 885.0
59 TraesCS6D01G142800 chr1D 93.300 597 21 2 1951 2528 31326426 31325830 0.000000e+00 863.0
60 TraesCS6D01G142800 chr1D 92.965 597 23 2 1951 2528 112169889 112170485 0.000000e+00 852.0
61 TraesCS6D01G142800 chr1D 95.546 449 19 1 2736 3184 108258583 108258136 0.000000e+00 717.0
62 TraesCS6D01G142800 chr1D 94.690 452 23 1 2733 3184 476251717 476252167 0.000000e+00 701.0
63 TraesCS6D01G142800 chr1D 97.312 186 5 0 3169 3354 108258112 108257927 3.220000e-82 316.0
64 TraesCS6D01G142800 chr1D 86.349 315 12 8 1308 1591 62128693 62128379 1.160000e-81 315.0
65 TraesCS6D01G142800 chr1D 97.297 185 4 1 3174 3357 326152222 326152406 4.160000e-81 313.0
66 TraesCS6D01G142800 chr1D 97.656 128 3 0 4723 4850 311357005 311356878 2.590000e-53 220.0
67 TraesCS6D01G142800 chr5D 93.445 595 20 4 1951 2526 346661674 346662268 0.000000e+00 865.0
68 TraesCS6D01G142800 chr5D 96.035 454 17 1 2731 3184 50837908 50837456 0.000000e+00 737.0
69 TraesCS6D01G142800 chr5D 92.593 243 12 5 1310 1546 323022428 323022670 1.480000e-90 344.0
70 TraesCS6D01G142800 chr5D 98.925 186 1 1 1951 2135 50847730 50847545 1.150000e-86 331.0
71 TraesCS6D01G142800 chr5D 90.541 222 15 6 1371 1590 496075455 496075672 7.010000e-74 289.0
72 TraesCS6D01G142800 chr5D 94.030 134 7 1 4721 4854 368983477 368983609 9.400000e-48 202.0
73 TraesCS6D01G142800 chr4B 90.588 595 41 12 1371 1961 186151044 186151627 0.000000e+00 774.0
74 TraesCS6D01G142800 chr4B 81.185 574 96 9 1951 2520 576187816 576188381 8.450000e-123 451.0
75 TraesCS6D01G142800 chr4B 92.143 140 10 1 4715 4854 568552969 568553107 4.370000e-46 196.0
76 TraesCS6D01G142800 chr1A 86.930 329 40 3 1951 2277 63752618 63752945 3.150000e-97 366.0
77 TraesCS6D01G142800 chr5B 92.361 144 9 2 4722 4865 96879070 96878929 2.610000e-48 204.0
78 TraesCS6D01G142800 chr5B 89.032 155 14 2 4696 4850 141498488 141498337 7.320000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G142800 chr6D 113459404 113464935 5531 False 2668.000000 5175 96.996500 1 5532 4 chr6D.!!$F1 5531
1 TraesCS6D01G142800 chr6D 178002602 178003277 675 True 658.000000 1000 95.380000 1309 3357 2 chr6D.!!$R5 2048
2 TraesCS6D01G142800 chr6D 76002191 76002764 573 True 635.500000 953 97.258000 1389 3357 2 chr6D.!!$R4 1968
3 TraesCS6D01G142800 chr6A 141294083 141297516 3433 False 1009.080000 2185 92.125000 1 5532 5 chr6A.!!$F2 5531
4 TraesCS6D01G142800 chr6A 100316856 100317451 595 True 885.000000 885 93.970000 1951 2528 1 chr6A.!!$R1 577
5 TraesCS6D01G142800 chr6A 309873404 309874000 596 True 863.000000 863 93.300000 1951 2528 1 chr6A.!!$R2 577
6 TraesCS6D01G142800 chr6A 190604601 190605174 573 False 616.500000 920 96.717500 1389 3354 2 chr6A.!!$F3 1965
7 TraesCS6D01G142800 chr6B 202542218 202545559 3341 False 1171.500000 2106 90.899250 1 5512 4 chr6B.!!$F1 5511
8 TraesCS6D01G142800 chr3D 121798720 121799396 676 True 985.000000 985 93.501000 1308 1961 1 chr3D.!!$R3 653
9 TraesCS6D01G142800 chr3D 574777808 574778380 572 True 931.000000 931 95.993000 1389 1961 1 chr3D.!!$R5 572
10 TraesCS6D01G142800 chr3D 121730522 121731101 579 True 887.000000 887 94.828000 1951 2511 1 chr3D.!!$R2 560
11 TraesCS6D01G142800 chr3D 134500191 134500787 596 False 880.000000 880 93.802000 1951 2528 1 chr3D.!!$F1 577
12 TraesCS6D01G142800 chr3D 646798 648441 1643 True 792.000000 885 94.231500 1951 3184 2 chr3D.!!$R6 1233
13 TraesCS6D01G142800 chr7D 110570644 110571210 566 True 955.000000 955 97.178000 1398 1961 1 chr7D.!!$R1 563
14 TraesCS6D01G142800 chr3A 675345781 675346346 565 False 922.000000 922 96.113000 1397 1961 1 chr3A.!!$F1 564
15 TraesCS6D01G142800 chr3A 545903046 545903626 580 True 813.000000 813 91.938000 2778 3358 1 chr3A.!!$R1 580
16 TraesCS6D01G142800 chr7A 519097087 519097651 564 True 920.000000 920 96.113000 1398 1961 1 chr7A.!!$R1 563
17 TraesCS6D01G142800 chr7A 200899369 200899956 587 False 865.000000 865 93.109000 2754 3348 1 chr7A.!!$F1 594
18 TraesCS6D01G142800 chr4A 86286732 86287305 573 False 909.000000 909 95.296000 1389 1961 1 chr4A.!!$F1 572
19 TraesCS6D01G142800 chr2D 392698445 392699042 597 True 909.000000 909 94.649000 1951 2528 1 chr2D.!!$R4 577
20 TraesCS6D01G142800 chr2D 99211101 99211697 596 True 891.000000 891 94.137000 1951 2528 1 chr2D.!!$R1 577
21 TraesCS6D01G142800 chr4D 301751584 301752180 596 True 896.000000 896 94.305000 1951 2528 1 chr4D.!!$R2 577
22 TraesCS6D01G142800 chr4D 479965211 479965807 596 True 880.000000 880 93.802000 1951 2528 1 chr4D.!!$R4 577
23 TraesCS6D01G142800 chr4D 432423023 432423618 595 True 852.000000 852 92.965000 1951 2528 1 chr4D.!!$R3 577
24 TraesCS6D01G142800 chr1D 31325830 31326426 596 True 863.000000 863 93.300000 1951 2528 1 chr1D.!!$R1 577
25 TraesCS6D01G142800 chr1D 112169889 112170485 596 False 852.000000 852 92.965000 1951 2528 1 chr1D.!!$F1 577
26 TraesCS6D01G142800 chr1D 108257927 108259831 1904 True 639.333333 885 95.609333 1951 3354 3 chr1D.!!$R4 1403
27 TraesCS6D01G142800 chr1D 326150561 326152406 1845 False 600.000000 887 95.638500 1951 3357 2 chr1D.!!$F3 1406
28 TraesCS6D01G142800 chr5D 346661674 346662268 594 False 865.000000 865 93.445000 1951 2526 1 chr5D.!!$F2 575
29 TraesCS6D01G142800 chr4B 186151044 186151627 583 False 774.000000 774 90.588000 1371 1961 1 chr4B.!!$F1 590
30 TraesCS6D01G142800 chr4B 576187816 576188381 565 False 451.000000 451 81.185000 1951 2520 1 chr4B.!!$F3 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 795 0.250684 TCGTGTGCCAACCATGACAT 60.251 50.0 0.0 0.0 0.00 3.06 F
1586 1673 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.0 10.0 0.0 36.56 2.74 F
2932 3483 0.031585 CGTGAAGACGGAGGTTGTCA 59.968 55.0 0.0 0.0 42.18 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1678 0.035739 GTTTGTGTAGGCGGGGAGAA 59.964 55.0 0.00 0.0 0.00 2.87 R
3440 4079 0.035820 TCCGGAAAACCCCATTCTCG 60.036 55.0 0.00 0.0 0.00 4.04 R
4826 5470 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.940397 AGGAAGTCATTTAAATCAAAGAAGGA 57.060 30.769 0.00 0.00 0.00 3.36
173 183 2.237393 TTGGCAGTGCAATTTGTTCC 57.763 45.000 18.61 0.00 0.00 3.62
184 194 6.265196 AGTGCAATTTGTTCCTTAGATTGTCA 59.735 34.615 0.00 0.00 31.96 3.58
233 243 7.452501 TGATTTTCAAAGGTCATCTGGAGAAAT 59.547 33.333 0.00 0.00 0.00 2.17
358 370 7.995488 AGTATGGATGCTTAATTCAAACTAGCT 59.005 33.333 0.00 0.00 33.15 3.32
384 396 6.234177 TGTTTTGTGGAAAGTGGAAAACAAT 58.766 32.000 0.00 0.00 41.27 2.71
423 435 7.227049 ACCCAATACTTGTAGGTTGAAAATG 57.773 36.000 0.00 0.00 0.00 2.32
434 446 6.981559 TGTAGGTTGAAAATGTTAACTTTGCC 59.018 34.615 7.22 3.71 0.00 4.52
440 452 6.815089 TGAAAATGTTAACTTTGCCAGTCAT 58.185 32.000 7.22 0.00 32.94 3.06
463 478 6.662414 TCACACTAACAAAAGACAGACAAG 57.338 37.500 0.00 0.00 0.00 3.16
468 483 2.213499 ACAAAAGACAGACAAGAGGCG 58.787 47.619 0.00 0.00 0.00 5.52
473 488 1.000283 AGACAGACAAGAGGCGAACAG 60.000 52.381 0.00 0.00 0.00 3.16
546 562 4.141914 ACCCCTCTCGTTTGAATGTAGATC 60.142 45.833 0.00 0.00 0.00 2.75
573 590 1.968493 ACTCGTACCTTTCAGCCTTCA 59.032 47.619 0.00 0.00 0.00 3.02
641 658 6.567050 AGCCATGTGTGAAATTAAGCATAAG 58.433 36.000 0.00 0.00 0.00 1.73
714 731 4.100808 AGTCTCTTGGGCTTCAGACATATC 59.899 45.833 0.00 0.00 0.00 1.63
763 780 3.730061 GCTTTTGATCTCTTGGCATCGTG 60.730 47.826 0.00 0.00 0.00 4.35
778 795 0.250684 TCGTGTGCCAACCATGACAT 60.251 50.000 0.00 0.00 0.00 3.06
810 827 1.065926 TCCTGTAGGCTGCATCTGTTG 60.066 52.381 5.55 0.00 34.44 3.33
813 830 1.002366 GTAGGCTGCATCTGTTGTCG 58.998 55.000 0.50 0.00 0.00 4.35
837 854 7.282224 TCGGAAATTTATCACTATTGTGGAAGG 59.718 37.037 7.45 0.00 43.94 3.46
850 867 0.615331 TGGAAGGACATCTGCTCACC 59.385 55.000 0.00 0.00 0.00 4.02
1038 1063 2.999185 ACCTCCCACCAAATGTCATT 57.001 45.000 0.00 0.00 0.00 2.57
1082 1107 3.242867 AGAATCTTGACCAGTCACCTCA 58.757 45.455 0.00 0.00 39.66 3.86
1086 1111 2.630098 TCTTGACCAGTCACCTCAAGAG 59.370 50.000 0.00 0.00 43.13 2.85
1218 1263 8.894768 AAAAATCGAGATGTTCCCTCTAATAG 57.105 34.615 0.00 0.00 0.00 1.73
1366 1415 2.197465 GTTGTAGGGGAAGGATGGAGT 58.803 52.381 0.00 0.00 0.00 3.85
1367 1416 1.879575 TGTAGGGGAAGGATGGAGTG 58.120 55.000 0.00 0.00 0.00 3.51
1373 1422 2.285368 AAGGATGGAGTGGGGCGA 60.285 61.111 0.00 0.00 0.00 5.54
1549 1636 9.853177 AAGAATTAACCTAAGATATCTTGTGGG 57.147 33.333 27.93 24.88 37.40 4.61
1550 1637 7.939588 AGAATTAACCTAAGATATCTTGTGGGC 59.060 37.037 27.93 16.64 37.40 5.36
1551 1638 6.824958 TTAACCTAAGATATCTTGTGGGCT 57.175 37.500 27.93 21.04 37.40 5.19
1552 1639 7.924358 TTAACCTAAGATATCTTGTGGGCTA 57.076 36.000 27.93 20.40 37.40 3.93
1553 1640 6.824958 AACCTAAGATATCTTGTGGGCTAA 57.175 37.500 27.93 10.56 37.40 3.09
1554 1641 6.426646 ACCTAAGATATCTTGTGGGCTAAG 57.573 41.667 27.93 16.93 37.40 2.18
1555 1642 6.143915 ACCTAAGATATCTTGTGGGCTAAGA 58.856 40.000 27.93 9.47 38.42 2.10
1556 1643 6.789959 ACCTAAGATATCTTGTGGGCTAAGAT 59.210 38.462 27.93 13.62 44.61 2.40
1557 1644 7.293535 ACCTAAGATATCTTGTGGGCTAAGATT 59.706 37.037 27.93 12.71 40.92 2.40
1558 1645 7.605691 CCTAAGATATCTTGTGGGCTAAGATTG 59.394 40.741 25.22 0.00 40.92 2.67
1559 1646 5.312079 AGATATCTTGTGGGCTAAGATTGC 58.688 41.667 14.10 8.97 40.92 3.56
1560 1647 7.193972 AAGATATCTTGTGGGCTAAGATTGCC 61.194 42.308 17.26 0.00 40.92 4.52
1565 1652 3.827634 GGCTAAGATTGCCCGGTG 58.172 61.111 0.00 0.00 44.32 4.94
1566 1653 1.823899 GGCTAAGATTGCCCGGTGG 60.824 63.158 0.00 0.00 44.32 4.61
1576 1663 2.766651 CCCGGTGGGCCTAGCTAA 60.767 66.667 16.80 0.00 35.35 3.09
1577 1664 2.372074 CCCGGTGGGCCTAGCTAAA 61.372 63.158 16.80 0.00 35.35 1.85
1578 1665 1.153229 CCGGTGGGCCTAGCTAAAC 60.153 63.158 16.80 0.00 0.00 2.01
1579 1666 1.153229 CGGTGGGCCTAGCTAAACC 60.153 63.158 16.80 0.14 0.00 3.27
1580 1667 1.153229 GGTGGGCCTAGCTAAACCG 60.153 63.158 11.59 0.00 0.00 4.44
1581 1668 1.153229 GTGGGCCTAGCTAAACCGG 60.153 63.158 4.53 0.00 0.00 5.28
1582 1669 2.203167 GGGCCTAGCTAAACCGGC 60.203 66.667 12.25 12.25 41.75 6.13
1584 1671 2.587889 GCCTAGCTAAACCGGCCA 59.412 61.111 10.00 0.00 36.56 5.36
1585 1672 1.148498 GCCTAGCTAAACCGGCCAT 59.852 57.895 10.00 0.00 36.56 4.40
1586 1673 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.000 10.00 0.00 36.56 2.74
1587 1674 1.202722 GCCTAGCTAAACCGGCCATAA 60.203 52.381 10.00 0.00 36.56 1.90
1588 1675 2.490991 CCTAGCTAAACCGGCCATAAC 58.509 52.381 0.00 0.00 0.00 1.89
1589 1676 2.158871 CCTAGCTAAACCGGCCATAACA 60.159 50.000 0.00 0.00 0.00 2.41
1590 1677 1.746470 AGCTAAACCGGCCATAACAC 58.254 50.000 0.00 0.00 0.00 3.32
1591 1678 1.280998 AGCTAAACCGGCCATAACACT 59.719 47.619 0.00 0.00 0.00 3.55
1592 1679 2.089201 GCTAAACCGGCCATAACACTT 58.911 47.619 0.00 0.00 0.00 3.16
1593 1680 2.096980 GCTAAACCGGCCATAACACTTC 59.903 50.000 0.00 0.00 0.00 3.01
1594 1681 2.579410 AAACCGGCCATAACACTTCT 57.421 45.000 0.00 0.00 0.00 2.85
1595 1682 2.109425 AACCGGCCATAACACTTCTC 57.891 50.000 0.00 0.00 0.00 2.87
1596 1683 0.252197 ACCGGCCATAACACTTCTCC 59.748 55.000 0.00 0.00 0.00 3.71
1597 1684 0.463833 CCGGCCATAACACTTCTCCC 60.464 60.000 2.24 0.00 0.00 4.30
1598 1685 0.463833 CGGCCATAACACTTCTCCCC 60.464 60.000 2.24 0.00 0.00 4.81
1599 1686 0.463833 GGCCATAACACTTCTCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
1600 1687 1.095807 GCCATAACACTTCTCCCCGC 61.096 60.000 0.00 0.00 0.00 6.13
1601 1688 0.463833 CCATAACACTTCTCCCCGCC 60.464 60.000 0.00 0.00 0.00 6.13
1602 1689 0.541863 CATAACACTTCTCCCCGCCT 59.458 55.000 0.00 0.00 0.00 5.52
1603 1690 1.760613 CATAACACTTCTCCCCGCCTA 59.239 52.381 0.00 0.00 0.00 3.93
1604 1691 1.188863 TAACACTTCTCCCCGCCTAC 58.811 55.000 0.00 0.00 0.00 3.18
1605 1692 0.834687 AACACTTCTCCCCGCCTACA 60.835 55.000 0.00 0.00 0.00 2.74
1606 1693 1.218316 CACTTCTCCCCGCCTACAC 59.782 63.158 0.00 0.00 0.00 2.90
1607 1694 1.229082 ACTTCTCCCCGCCTACACA 60.229 57.895 0.00 0.00 0.00 3.72
1608 1695 0.834687 ACTTCTCCCCGCCTACACAA 60.835 55.000 0.00 0.00 0.00 3.33
1609 1696 0.323629 CTTCTCCCCGCCTACACAAA 59.676 55.000 0.00 0.00 0.00 2.83
1610 1697 0.035739 TTCTCCCCGCCTACACAAAC 59.964 55.000 0.00 0.00 0.00 2.93
1611 1698 1.122632 TCTCCCCGCCTACACAAACA 61.123 55.000 0.00 0.00 0.00 2.83
1612 1699 0.673644 CTCCCCGCCTACACAAACAG 60.674 60.000 0.00 0.00 0.00 3.16
1613 1700 2.332654 CCCCGCCTACACAAACAGC 61.333 63.158 0.00 0.00 0.00 4.40
1614 1701 1.302511 CCCGCCTACACAAACAGCT 60.303 57.895 0.00 0.00 0.00 4.24
1615 1702 1.298859 CCCGCCTACACAAACAGCTC 61.299 60.000 0.00 0.00 0.00 4.09
1616 1703 1.626654 CCGCCTACACAAACAGCTCG 61.627 60.000 0.00 0.00 0.00 5.03
1617 1704 0.944311 CGCCTACACAAACAGCTCGT 60.944 55.000 0.00 0.00 0.00 4.18
1618 1705 0.790814 GCCTACACAAACAGCTCGTC 59.209 55.000 0.00 0.00 0.00 4.20
1619 1706 1.429463 CCTACACAAACAGCTCGTCC 58.571 55.000 0.00 0.00 0.00 4.79
1620 1707 1.000955 CCTACACAAACAGCTCGTCCT 59.999 52.381 0.00 0.00 0.00 3.85
1621 1708 2.329379 CTACACAAACAGCTCGTCCTC 58.671 52.381 0.00 0.00 0.00 3.71
1622 1709 0.597637 ACACAAACAGCTCGTCCTCG 60.598 55.000 0.00 0.00 38.55 4.63
1623 1710 0.318699 CACAAACAGCTCGTCCTCGA 60.319 55.000 0.00 0.00 44.12 4.04
1632 1719 2.478989 TCGTCCTCGAGCTGTAAGG 58.521 57.895 6.99 0.00 41.35 2.69
1641 1728 4.320910 GCTGTAAGGTGGGGAAGC 57.679 61.111 0.00 0.00 0.00 3.86
1642 1729 1.745489 GCTGTAAGGTGGGGAAGCG 60.745 63.158 0.00 0.00 0.00 4.68
1643 1730 1.745489 CTGTAAGGTGGGGAAGCGC 60.745 63.158 0.00 0.00 0.00 5.92
1644 1731 2.185310 CTGTAAGGTGGGGAAGCGCT 62.185 60.000 2.64 2.64 0.00 5.92
1645 1732 1.002502 GTAAGGTGGGGAAGCGCTT 60.003 57.895 25.35 25.35 0.00 4.68
1646 1733 1.002624 TAAGGTGGGGAAGCGCTTG 60.003 57.895 30.47 0.00 0.00 4.01
1652 1739 4.103103 GGGAAGCGCTTGCGGAAC 62.103 66.667 31.27 16.44 45.69 3.62
1653 1740 3.050275 GGAAGCGCTTGCGGAACT 61.050 61.111 30.47 0.00 45.69 3.01
1654 1741 2.476499 GAAGCGCTTGCGGAACTC 59.524 61.111 30.47 6.54 45.69 3.01
1655 1742 3.028366 GAAGCGCTTGCGGAACTCC 62.028 63.158 30.47 5.56 45.69 3.85
1656 1743 3.537206 AAGCGCTTGCGGAACTCCT 62.537 57.895 24.40 0.00 45.69 3.69
1657 1744 3.491652 GCGCTTGCGGAACTCCTC 61.492 66.667 16.79 0.00 0.00 3.71
1658 1745 3.181967 CGCTTGCGGAACTCCTCG 61.182 66.667 7.16 0.00 0.00 4.63
1659 1746 2.261671 GCTTGCGGAACTCCTCGA 59.738 61.111 0.00 0.00 0.00 4.04
1660 1747 1.807573 GCTTGCGGAACTCCTCGAG 60.808 63.158 5.13 5.13 35.74 4.04
1661 1748 1.153745 CTTGCGGAACTCCTCGAGG 60.154 63.158 26.32 26.32 33.35 4.63
1662 1749 3.296709 TTGCGGAACTCCTCGAGGC 62.297 63.158 27.39 13.37 33.35 4.70
1663 1750 4.856607 GCGGAACTCCTCGAGGCG 62.857 72.222 27.39 23.55 33.35 5.52
1664 1751 3.132139 CGGAACTCCTCGAGGCGA 61.132 66.667 27.68 10.65 33.35 5.54
1665 1752 2.482333 CGGAACTCCTCGAGGCGAT 61.482 63.158 27.68 16.57 34.61 4.58
1666 1753 1.360911 GGAACTCCTCGAGGCGATC 59.639 63.158 27.68 23.64 34.61 3.69
1667 1754 1.384989 GGAACTCCTCGAGGCGATCA 61.385 60.000 27.68 9.07 34.61 2.92
1668 1755 0.456221 GAACTCCTCGAGGCGATCAA 59.544 55.000 27.68 8.30 34.61 2.57
1669 1756 0.173708 AACTCCTCGAGGCGATCAAC 59.826 55.000 27.68 0.00 34.61 3.18
1670 1757 1.066587 CTCCTCGAGGCGATCAACC 59.933 63.158 27.39 0.00 34.61 3.77
1671 1758 1.667154 CTCCTCGAGGCGATCAACCA 61.667 60.000 27.39 5.00 34.61 3.67
1672 1759 1.227089 CCTCGAGGCGATCAACCAG 60.227 63.158 20.67 0.00 34.61 4.00
1673 1760 1.880340 CTCGAGGCGATCAACCAGC 60.880 63.158 3.91 0.00 34.61 4.85
1674 1761 3.257561 CGAGGCGATCAACCAGCG 61.258 66.667 4.68 4.14 0.00 5.18
1675 1762 2.125512 GAGGCGATCAACCAGCGT 60.126 61.111 4.68 0.00 0.00 5.07
1676 1763 2.125512 AGGCGATCAACCAGCGTC 60.126 61.111 4.68 0.00 0.00 5.19
1677 1764 2.434185 GGCGATCAACCAGCGTCA 60.434 61.111 0.00 0.00 0.00 4.35
1678 1765 2.032634 GGCGATCAACCAGCGTCAA 61.033 57.895 0.00 0.00 0.00 3.18
1679 1766 1.573829 GGCGATCAACCAGCGTCAAA 61.574 55.000 0.00 0.00 0.00 2.69
1680 1767 0.452784 GCGATCAACCAGCGTCAAAC 60.453 55.000 0.00 0.00 0.00 2.93
1681 1768 0.865111 CGATCAACCAGCGTCAAACA 59.135 50.000 0.00 0.00 0.00 2.83
1682 1769 1.398451 CGATCAACCAGCGTCAAACAC 60.398 52.381 0.00 0.00 0.00 3.32
1683 1770 0.951558 ATCAACCAGCGTCAAACACC 59.048 50.000 0.00 0.00 0.00 4.16
1684 1771 0.107410 TCAACCAGCGTCAAACACCT 60.107 50.000 0.00 0.00 0.00 4.00
1685 1772 0.738389 CAACCAGCGTCAAACACCTT 59.262 50.000 0.00 0.00 0.00 3.50
1686 1773 1.021968 AACCAGCGTCAAACACCTTC 58.978 50.000 0.00 0.00 0.00 3.46
1687 1774 0.180406 ACCAGCGTCAAACACCTTCT 59.820 50.000 0.00 0.00 0.00 2.85
1688 1775 0.868406 CCAGCGTCAAACACCTTCTC 59.132 55.000 0.00 0.00 0.00 2.87
1689 1776 0.508641 CAGCGTCAAACACCTTCTCG 59.491 55.000 0.00 0.00 0.00 4.04
1690 1777 0.387929 AGCGTCAAACACCTTCTCGA 59.612 50.000 0.00 0.00 0.00 4.04
1691 1778 0.507358 GCGTCAAACACCTTCTCGAC 59.493 55.000 0.00 0.00 0.00 4.20
1692 1779 1.847818 CGTCAAACACCTTCTCGACA 58.152 50.000 0.00 0.00 0.00 4.35
1693 1780 1.787155 CGTCAAACACCTTCTCGACAG 59.213 52.381 0.00 0.00 0.00 3.51
1694 1781 1.527311 GTCAAACACCTTCTCGACAGC 59.473 52.381 0.00 0.00 0.00 4.40
1695 1782 1.412710 TCAAACACCTTCTCGACAGCT 59.587 47.619 0.00 0.00 0.00 4.24
1696 1783 2.626266 TCAAACACCTTCTCGACAGCTA 59.374 45.455 0.00 0.00 0.00 3.32
1697 1784 2.989840 CAAACACCTTCTCGACAGCTAG 59.010 50.000 0.00 0.00 0.00 3.42
1698 1785 1.178276 ACACCTTCTCGACAGCTAGG 58.822 55.000 0.00 0.00 0.00 3.02
1699 1786 0.457851 CACCTTCTCGACAGCTAGGG 59.542 60.000 1.67 0.00 0.00 3.53
1700 1787 1.324005 ACCTTCTCGACAGCTAGGGC 61.324 60.000 1.67 0.00 39.06 5.19
1701 1788 1.323271 CCTTCTCGACAGCTAGGGCA 61.323 60.000 0.00 0.00 41.70 5.36
1702 1789 0.102120 CTTCTCGACAGCTAGGGCAG 59.898 60.000 0.00 0.00 41.70 4.85
1710 1797 4.537433 GCTAGGGCAGCCAGGTCG 62.537 72.222 15.19 0.00 45.23 4.79
1711 1798 3.854669 CTAGGGCAGCCAGGTCGG 61.855 72.222 15.19 0.00 38.11 4.79
1735 1822 4.143333 CGGCGTCCTCCGGAATGT 62.143 66.667 5.23 0.00 45.38 2.71
1736 1823 2.777972 CGGCGTCCTCCGGAATGTA 61.778 63.158 5.23 0.00 45.38 2.29
1737 1824 1.067582 GGCGTCCTCCGGAATGTAG 59.932 63.158 5.23 0.00 36.94 2.74
1738 1825 1.673808 GGCGTCCTCCGGAATGTAGT 61.674 60.000 5.23 0.00 36.94 2.73
1739 1826 0.248949 GCGTCCTCCGGAATGTAGTC 60.249 60.000 5.23 0.00 36.94 2.59
1740 1827 1.390565 CGTCCTCCGGAATGTAGTCT 58.609 55.000 5.23 0.00 31.38 3.24
1741 1828 1.065701 CGTCCTCCGGAATGTAGTCTG 59.934 57.143 5.23 0.00 31.38 3.51
1742 1829 1.112113 TCCTCCGGAATGTAGTCTGC 58.888 55.000 5.23 0.00 0.00 4.26
1743 1830 0.824109 CCTCCGGAATGTAGTCTGCA 59.176 55.000 5.23 0.00 0.00 4.41
1744 1831 1.207089 CCTCCGGAATGTAGTCTGCAA 59.793 52.381 5.23 0.00 0.00 4.08
1745 1832 2.271800 CTCCGGAATGTAGTCTGCAAC 58.728 52.381 5.23 0.00 0.00 4.17
1746 1833 1.066430 TCCGGAATGTAGTCTGCAACC 60.066 52.381 0.00 1.50 0.00 3.77
1747 1834 1.066143 CCGGAATGTAGTCTGCAACCT 60.066 52.381 0.00 0.00 0.00 3.50
1748 1835 2.271800 CGGAATGTAGTCTGCAACCTC 58.728 52.381 12.77 3.82 0.00 3.85
1749 1836 2.633488 GGAATGTAGTCTGCAACCTCC 58.367 52.381 0.00 0.00 0.00 4.30
1750 1837 2.027192 GGAATGTAGTCTGCAACCTCCA 60.027 50.000 10.38 0.00 0.00 3.86
1751 1838 3.265791 GAATGTAGTCTGCAACCTCCAG 58.734 50.000 0.00 0.00 0.00 3.86
1752 1839 0.976641 TGTAGTCTGCAACCTCCAGG 59.023 55.000 0.00 0.00 42.17 4.45
1764 1851 0.741915 CCTCCAGGTAGAAGAGTCGC 59.258 60.000 0.00 0.00 0.00 5.19
1765 1852 0.378962 CTCCAGGTAGAAGAGTCGCG 59.621 60.000 0.00 0.00 0.00 5.87
1766 1853 1.030488 TCCAGGTAGAAGAGTCGCGG 61.030 60.000 6.13 0.00 0.00 6.46
1767 1854 1.433879 CAGGTAGAAGAGTCGCGGG 59.566 63.158 6.13 0.00 0.00 6.13
1768 1855 2.104530 GGTAGAAGAGTCGCGGGC 59.895 66.667 6.13 0.00 0.00 6.13
1769 1856 2.707849 GGTAGAAGAGTCGCGGGCA 61.708 63.158 6.13 0.00 0.00 5.36
1770 1857 1.226717 GTAGAAGAGTCGCGGGCAG 60.227 63.158 6.13 0.00 0.00 4.85
1771 1858 2.415608 TAGAAGAGTCGCGGGCAGG 61.416 63.158 6.13 0.00 0.00 4.85
1796 1883 4.509737 GGGCGTGTAGGGCTCGTC 62.510 72.222 0.00 0.00 37.89 4.20
1797 1884 4.849329 GGCGTGTAGGGCTCGTCG 62.849 72.222 0.00 0.00 36.57 5.12
1799 1886 4.111016 CGTGTAGGGCTCGTCGCA 62.111 66.667 2.27 0.00 41.67 5.10
1800 1887 2.202623 GTGTAGGGCTCGTCGCAG 60.203 66.667 2.27 0.00 41.67 5.18
1801 1888 2.675423 TGTAGGGCTCGTCGCAGT 60.675 61.111 2.27 0.00 41.67 4.40
1802 1889 2.273179 TGTAGGGCTCGTCGCAGTT 61.273 57.895 2.27 0.00 41.67 3.16
1803 1890 1.805945 GTAGGGCTCGTCGCAGTTG 60.806 63.158 2.27 0.00 41.67 3.16
1804 1891 1.974875 TAGGGCTCGTCGCAGTTGA 60.975 57.895 2.27 0.00 41.67 3.18
1805 1892 1.529152 TAGGGCTCGTCGCAGTTGAA 61.529 55.000 2.27 0.00 41.67 2.69
1806 1893 2.383527 GGGCTCGTCGCAGTTGAAG 61.384 63.158 2.27 0.00 41.67 3.02
1807 1894 2.472049 GCTCGTCGCAGTTGAAGC 59.528 61.111 0.00 0.00 38.92 3.86
1808 1895 2.310233 GCTCGTCGCAGTTGAAGCA 61.310 57.895 0.00 0.00 38.92 3.91
1809 1896 1.488957 CTCGTCGCAGTTGAAGCAC 59.511 57.895 0.00 0.00 0.00 4.40
1810 1897 1.215014 CTCGTCGCAGTTGAAGCACA 61.215 55.000 0.00 0.00 0.00 4.57
1811 1898 0.808060 TCGTCGCAGTTGAAGCACAA 60.808 50.000 0.00 0.00 36.02 3.33
1812 1899 0.235665 CGTCGCAGTTGAAGCACAAT 59.764 50.000 0.14 0.00 40.76 2.71
1813 1900 1.722751 CGTCGCAGTTGAAGCACAATC 60.723 52.381 0.14 0.00 40.76 2.67
1814 1901 0.874390 TCGCAGTTGAAGCACAATCC 59.126 50.000 0.14 0.00 40.76 3.01
1815 1902 0.877071 CGCAGTTGAAGCACAATCCT 59.123 50.000 0.14 0.00 40.76 3.24
1816 1903 1.267806 CGCAGTTGAAGCACAATCCTT 59.732 47.619 0.14 0.00 40.76 3.36
1817 1904 2.669364 GCAGTTGAAGCACAATCCTTG 58.331 47.619 0.14 0.00 40.76 3.61
1818 1905 2.608752 GCAGTTGAAGCACAATCCTTGG 60.609 50.000 0.14 0.00 40.76 3.61
1819 1906 1.615392 AGTTGAAGCACAATCCTTGGC 59.385 47.619 0.14 0.00 40.76 4.52
1820 1907 0.597568 TTGAAGCACAATCCTTGGCG 59.402 50.000 0.00 0.00 33.18 5.69
1821 1908 1.243342 TGAAGCACAATCCTTGGCGG 61.243 55.000 0.00 0.00 33.78 6.13
1822 1909 2.548127 GAAGCACAATCCTTGGCGGC 62.548 60.000 0.00 0.00 33.78 6.53
1823 1910 4.481112 GCACAATCCTTGGCGGCG 62.481 66.667 0.51 0.51 34.12 6.46
1824 1911 2.745884 CACAATCCTTGGCGGCGA 60.746 61.111 12.98 0.14 34.12 5.54
1825 1912 2.746277 ACAATCCTTGGCGGCGAC 60.746 61.111 12.98 9.31 34.12 5.19
1860 1947 4.162690 GAGGTGAGCCGGCGGAAT 62.163 66.667 33.44 18.10 40.50 3.01
1861 1948 4.473520 AGGTGAGCCGGCGGAATG 62.474 66.667 33.44 2.59 40.50 2.67
2795 3346 4.796231 GATCGGCCAGTGCGTCGT 62.796 66.667 2.24 0.00 38.85 4.34
2932 3483 0.031585 CGTGAAGACGGAGGTTGTCA 59.968 55.000 0.00 0.00 42.18 3.58
2933 3484 1.537348 CGTGAAGACGGAGGTTGTCAA 60.537 52.381 0.00 0.00 42.18 3.18
3198 3824 1.870941 TAGGGTTCCGGCTCCTCTGA 61.871 60.000 12.29 0.00 32.46 3.27
3428 4067 4.806892 TGGATATTGGAAATGATGCAGGT 58.193 39.130 0.00 0.00 0.00 4.00
3467 4106 1.095600 GGGTTTTCCGGATGAAGCTC 58.904 55.000 21.99 8.19 41.82 4.09
3521 4160 2.683211 AAGGTCTGGCCATCTTTTGT 57.317 45.000 5.51 0.00 40.61 2.83
3523 4162 1.145738 AGGTCTGGCCATCTTTTGTGT 59.854 47.619 5.51 0.00 40.61 3.72
3582 4221 0.034380 AGCCTGAGCAGTTGCATCAT 60.034 50.000 6.90 0.00 45.16 2.45
3583 4222 0.100682 GCCTGAGCAGTTGCATCATG 59.899 55.000 6.90 5.88 45.16 3.07
3584 4223 1.460504 CCTGAGCAGTTGCATCATGT 58.539 50.000 6.90 0.00 45.16 3.21
3585 4224 1.816835 CCTGAGCAGTTGCATCATGTT 59.183 47.619 6.90 0.00 45.16 2.71
3586 4225 2.159421 CCTGAGCAGTTGCATCATGTTC 60.159 50.000 6.90 0.93 45.16 3.18
3587 4226 2.747989 CTGAGCAGTTGCATCATGTTCT 59.252 45.455 6.90 0.00 45.16 3.01
3588 4227 3.151554 TGAGCAGTTGCATCATGTTCTT 58.848 40.909 6.90 0.00 45.16 2.52
3589 4228 3.570975 TGAGCAGTTGCATCATGTTCTTT 59.429 39.130 6.90 0.00 45.16 2.52
3779 4418 5.076873 ACATACTACAACAATGTTTGGCCT 58.923 37.500 3.32 0.00 41.05 5.19
3947 4590 2.287608 TGAGAACTATGCGGACTATGCG 60.288 50.000 0.00 0.00 34.24 4.73
3961 4604 1.704387 TATGCGCGTCATGCAAGGTG 61.704 55.000 21.08 0.00 46.87 4.00
3972 4615 1.398692 TGCAAGGTGACCTTTTGACC 58.601 50.000 15.48 1.76 41.69 4.02
4504 5147 3.490933 CCGATAAGAAGAAGATGGACGCA 60.491 47.826 0.00 0.00 0.00 5.24
4587 5230 6.487668 TGTAGCACAGATGAATGAATATTGGG 59.512 38.462 0.00 0.00 0.00 4.12
4678 5322 4.530553 TGAGAGGCATCTGGTAAACTGTTA 59.469 41.667 5.17 0.00 35.30 2.41
4696 5340 3.190327 TGTTATGTCACCTGCGGAAATTG 59.810 43.478 0.00 0.00 0.00 2.32
4718 5362 6.130298 TGTGTCGAAAGAATGTGAATTGTT 57.870 33.333 0.00 0.00 45.01 2.83
4719 5363 5.970612 TGTGTCGAAAGAATGTGAATTGTTG 59.029 36.000 0.00 0.00 45.01 3.33
4720 5364 5.971202 GTGTCGAAAGAATGTGAATTGTTGT 59.029 36.000 0.00 0.00 45.01 3.32
4721 5365 7.129622 GTGTCGAAAGAATGTGAATTGTTGTA 58.870 34.615 0.00 0.00 45.01 2.41
4722 5366 7.803189 GTGTCGAAAGAATGTGAATTGTTGTAT 59.197 33.333 0.00 0.00 45.01 2.29
4723 5367 8.994170 TGTCGAAAGAATGTGAATTGTTGTATA 58.006 29.630 0.00 0.00 45.01 1.47
4724 5368 9.262472 GTCGAAAGAATGTGAATTGTTGTATAC 57.738 33.333 0.00 0.00 45.01 1.47
4725 5369 9.214957 TCGAAAGAATGTGAATTGTTGTATACT 57.785 29.630 4.17 0.00 37.03 2.12
4726 5370 9.478019 CGAAAGAATGTGAATTGTTGTATACTC 57.522 33.333 4.17 0.00 0.00 2.59
4727 5371 9.774742 GAAAGAATGTGAATTGTTGTATACTCC 57.225 33.333 4.17 0.00 0.00 3.85
4728 5372 7.865706 AGAATGTGAATTGTTGTATACTCCC 57.134 36.000 4.17 0.00 0.00 4.30
4729 5373 7.633789 AGAATGTGAATTGTTGTATACTCCCT 58.366 34.615 4.17 0.00 0.00 4.20
4730 5374 7.770897 AGAATGTGAATTGTTGTATACTCCCTC 59.229 37.037 4.17 0.00 0.00 4.30
4731 5375 6.620877 TGTGAATTGTTGTATACTCCCTCT 57.379 37.500 4.17 0.00 0.00 3.69
4732 5376 6.406370 TGTGAATTGTTGTATACTCCCTCTG 58.594 40.000 4.17 0.00 0.00 3.35
4733 5377 6.013725 TGTGAATTGTTGTATACTCCCTCTGT 60.014 38.462 4.17 0.00 0.00 3.41
4734 5378 6.535508 GTGAATTGTTGTATACTCCCTCTGTC 59.464 42.308 4.17 0.00 0.00 3.51
4735 5379 6.440647 TGAATTGTTGTATACTCCCTCTGTCT 59.559 38.462 4.17 0.00 0.00 3.41
4736 5380 5.661056 TTGTTGTATACTCCCTCTGTCTG 57.339 43.478 4.17 0.00 0.00 3.51
4737 5381 4.930696 TGTTGTATACTCCCTCTGTCTGA 58.069 43.478 4.17 0.00 0.00 3.27
4738 5382 5.330233 TGTTGTATACTCCCTCTGTCTGAA 58.670 41.667 4.17 0.00 0.00 3.02
4739 5383 5.778241 TGTTGTATACTCCCTCTGTCTGAAA 59.222 40.000 4.17 0.00 0.00 2.69
4740 5384 6.269077 TGTTGTATACTCCCTCTGTCTGAAAA 59.731 38.462 4.17 0.00 0.00 2.29
4741 5385 6.928348 TGTATACTCCCTCTGTCTGAAAAA 57.072 37.500 4.17 0.00 0.00 1.94
4768 5412 8.992073 ACTTGTCATCAAAATGAATAAAAAGGC 58.008 29.630 0.00 0.00 43.42 4.35
4769 5413 8.899427 TTGTCATCAAAATGAATAAAAAGGCA 57.101 26.923 0.00 0.00 43.42 4.75
4770 5414 9.504708 TTGTCATCAAAATGAATAAAAAGGCAT 57.495 25.926 0.00 0.00 43.42 4.40
4771 5415 8.937884 TGTCATCAAAATGAATAAAAAGGCATG 58.062 29.630 0.00 0.00 43.42 4.06
4772 5416 8.938906 GTCATCAAAATGAATAAAAAGGCATGT 58.061 29.630 0.00 0.00 43.42 3.21
4780 5424 9.866655 AATGAATAAAAAGGCATGTATCTAGGA 57.133 29.630 0.00 0.00 0.00 2.94
4781 5425 8.677148 TGAATAAAAAGGCATGTATCTAGGAC 57.323 34.615 0.00 0.00 0.00 3.85
4782 5426 8.494433 TGAATAAAAAGGCATGTATCTAGGACT 58.506 33.333 0.00 0.00 0.00 3.85
4783 5427 9.998106 GAATAAAAAGGCATGTATCTAGGACTA 57.002 33.333 0.00 0.00 0.00 2.59
4790 5434 9.769677 AAGGCATGTATCTAGGACTAATATACA 57.230 33.333 12.71 12.71 37.42 2.29
4791 5435 9.944079 AGGCATGTATCTAGGACTAATATACAT 57.056 33.333 14.88 14.88 41.89 2.29
4823 5467 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
4824 5468 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
4825 5469 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
4826 5470 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4827 5471 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4828 5472 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4835 5479 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4836 5480 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4837 5481 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4838 5482 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4839 5483 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4840 5484 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4841 5485 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4842 5486 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4843 5487 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4844 5488 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4845 5489 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4846 5490 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4894 5538 3.425659 ACAATTCTCCCAAAGAAGGCTC 58.574 45.455 0.00 0.00 46.95 4.70
4952 5596 7.210174 AGAAAACTTCTATTGGTTTTTCCTGC 58.790 34.615 0.00 0.00 43.02 4.85
4973 5617 3.744426 GCATTTGAGCTCATTTGCAACTT 59.256 39.130 31.20 6.09 35.49 2.66
5007 5651 7.615365 TGAGGGAATCATTTGCAACTAACTATT 59.385 33.333 0.00 0.00 31.12 1.73
5008 5652 8.366359 AGGGAATCATTTGCAACTAACTATTT 57.634 30.769 0.00 0.00 0.00 1.40
5009 5653 8.815912 AGGGAATCATTTGCAACTAACTATTTT 58.184 29.630 0.00 0.00 0.00 1.82
5088 5736 5.242434 AGTTGATGCCGTATTGTGTTTCTA 58.758 37.500 0.00 0.00 0.00 2.10
5100 5748 5.871396 TTGTGTTTCTAGGAGAACAGAGT 57.129 39.130 7.27 0.00 33.26 3.24
5149 5798 4.253685 CTCCCGTGTATGAACAGTGAATT 58.746 43.478 0.00 0.00 35.91 2.17
5237 5933 6.772716 TGGAAAGTCTGATTTTGCTTTCTAGT 59.227 34.615 15.80 0.00 43.52 2.57
5250 5946 3.246619 CTTTCTAGTGTCTTCTCGGCAC 58.753 50.000 0.00 0.00 0.00 5.01
5330 6028 1.817099 CCGTTCATCTGGGAGCAGC 60.817 63.158 0.00 0.00 0.00 5.25
5366 6064 3.051727 AGCTCCTGGATACTTCTTAGGGT 60.052 47.826 0.00 0.00 37.61 4.34
5367 6065 4.170251 AGCTCCTGGATACTTCTTAGGGTA 59.830 45.833 0.00 0.00 37.61 3.69
5368 6066 4.525100 GCTCCTGGATACTTCTTAGGGTAG 59.475 50.000 0.00 0.00 37.61 3.18
5369 6067 5.076057 TCCTGGATACTTCTTAGGGTAGG 57.924 47.826 0.00 0.00 37.61 3.18
5428 6139 3.036819 TCTGATGGAATCTGTCAGGGAG 58.963 50.000 12.74 0.00 45.81 4.30
5432 6143 3.199442 TGGAATCTGTCAGGGAGGTTA 57.801 47.619 0.00 0.00 0.00 2.85
5435 6146 4.164221 TGGAATCTGTCAGGGAGGTTATTC 59.836 45.833 0.00 0.32 0.00 1.75
5512 6223 6.496218 ACCTCATCAGATAACTATCATCAGCA 59.504 38.462 0.00 0.00 35.17 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.544564 TGATCATAGCATCACATTCACATGTT 59.455 34.615 0.00 0.00 41.16 2.71
173 183 2.938451 TGCGGCTTGATGACAATCTAAG 59.062 45.455 0.00 0.00 35.37 2.18
184 194 2.698855 ATCTACTGTTGCGGCTTGAT 57.301 45.000 0.00 0.00 0.00 2.57
278 290 6.811253 TTAACCACGCATGTTTCTATCTTT 57.189 33.333 0.00 0.00 0.00 2.52
293 305 6.582437 AAAAGAGCATTGTTTTTAACCACG 57.418 33.333 0.00 0.00 0.00 4.94
358 370 6.936279 TGTTTTCCACTTTCCACAAAACATA 58.064 32.000 4.56 0.00 40.36 2.29
384 396 0.621082 TGGGTTTGACCACACAGACA 59.379 50.000 0.00 0.00 41.02 3.41
423 435 4.275936 AGTGTGATGACTGGCAAAGTTAAC 59.724 41.667 0.00 0.00 40.07 2.01
434 446 6.479990 TCTGTCTTTTGTTAGTGTGATGACTG 59.520 38.462 0.00 0.00 0.00 3.51
440 452 6.403049 TCTTGTCTGTCTTTTGTTAGTGTGA 58.597 36.000 0.00 0.00 0.00 3.58
463 478 1.989430 CTCTCTTGTCTGTTCGCCTC 58.011 55.000 0.00 0.00 0.00 4.70
468 483 7.426929 TTTTCAATAGCTCTCTTGTCTGTTC 57.573 36.000 0.00 0.00 0.00 3.18
473 488 9.553418 GAGAAATTTTTCAATAGCTCTCTTGTC 57.447 33.333 3.93 0.00 39.61 3.18
521 537 3.329929 ACATTCAAACGAGAGGGGTAC 57.670 47.619 0.00 0.00 0.00 3.34
546 562 0.036671 GAAAGGTACGAGTGGGTGGG 60.037 60.000 0.00 0.00 0.00 4.61
609 626 1.689984 TCACACATGGCTTCTGCAAA 58.310 45.000 0.00 0.00 41.91 3.68
730 747 6.579666 AGAGATCAAAAGCAAGTGCATTAA 57.420 33.333 6.00 0.00 45.16 1.40
735 752 3.572584 CCAAGAGATCAAAAGCAAGTGC 58.427 45.455 0.00 0.00 42.49 4.40
737 754 3.225104 TGCCAAGAGATCAAAAGCAAGT 58.775 40.909 0.00 0.00 0.00 3.16
763 780 3.836949 CAGTTAATGTCATGGTTGGCAC 58.163 45.455 0.00 0.00 41.03 5.01
778 795 3.072476 AGCCTACAGGAAACAGCAGTTAA 59.928 43.478 0.00 0.00 34.75 2.01
837 854 2.351157 GCAACTTTGGTGAGCAGATGTC 60.351 50.000 0.00 0.00 0.00 3.06
887 904 5.841957 AATAATCACCATGGAAGCAAGAC 57.158 39.130 21.47 0.00 0.00 3.01
1038 1063 6.663093 TCTTCAATTCTTTAGCCAATTGCCTA 59.337 34.615 0.00 0.00 42.71 3.93
1082 1107 5.032846 TCACAATCACTCTAATCCCCTCTT 58.967 41.667 0.00 0.00 0.00 2.85
1086 1111 5.529060 GTCATTCACAATCACTCTAATCCCC 59.471 44.000 0.00 0.00 0.00 4.81
1217 1262 9.723601 ACACATGGAAAAATTATAACAAATGCT 57.276 25.926 0.00 0.00 0.00 3.79
1249 1298 6.042777 TCAGTTATGAACACTAGCAGCATAC 58.957 40.000 0.00 0.00 30.61 2.39
1391 1478 1.400530 CCTCTAACCCTAGCCACCGG 61.401 65.000 0.00 0.00 0.00 5.28
1395 1482 1.760875 CCGCCTCTAACCCTAGCCA 60.761 63.158 0.00 0.00 0.00 4.75
1534 1621 6.936900 GCAATCTTAGCCCACAAGATATCTTA 59.063 38.462 17.53 0.00 40.92 2.10
1535 1622 5.767168 GCAATCTTAGCCCACAAGATATCTT 59.233 40.000 12.37 12.37 40.92 2.40
1536 1623 5.312079 GCAATCTTAGCCCACAAGATATCT 58.688 41.667 0.00 0.00 40.92 1.98
1537 1624 4.457257 GGCAATCTTAGCCCACAAGATATC 59.543 45.833 0.00 0.00 46.50 1.63
1538 1625 4.401925 GGCAATCTTAGCCCACAAGATAT 58.598 43.478 0.00 0.00 46.50 1.63
1539 1626 3.820557 GGCAATCTTAGCCCACAAGATA 58.179 45.455 0.00 0.00 46.50 1.98
1540 1627 2.659428 GGCAATCTTAGCCCACAAGAT 58.341 47.619 0.00 0.00 46.50 2.40
1541 1628 2.128771 GGCAATCTTAGCCCACAAGA 57.871 50.000 0.00 0.00 46.50 3.02
1549 1636 1.823899 CCCACCGGGCAATCTTAGC 60.824 63.158 6.32 0.00 35.35 3.09
1550 1637 4.559502 CCCACCGGGCAATCTTAG 57.440 61.111 6.32 0.00 35.35 2.18
1560 1647 1.153229 GTTTAGCTAGGCCCACCGG 60.153 63.158 0.00 0.00 42.76 5.28
1561 1648 1.153229 GGTTTAGCTAGGCCCACCG 60.153 63.158 0.00 0.00 42.76 4.94
1562 1649 1.153229 CGGTTTAGCTAGGCCCACC 60.153 63.158 0.00 4.71 0.00 4.61
1563 1650 1.153229 CCGGTTTAGCTAGGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
1564 1651 3.038945 GCCGGTTTAGCTAGGCCCA 62.039 63.158 10.00 0.00 43.54 5.36
1565 1652 2.203167 GCCGGTTTAGCTAGGCCC 60.203 66.667 10.00 3.43 43.54 5.80
1568 1655 2.158871 TGTTATGGCCGGTTTAGCTAGG 60.159 50.000 1.90 0.00 0.00 3.02
1569 1656 2.870411 GTGTTATGGCCGGTTTAGCTAG 59.130 50.000 1.90 0.00 0.00 3.42
1570 1657 2.502538 AGTGTTATGGCCGGTTTAGCTA 59.497 45.455 1.90 0.00 0.00 3.32
1571 1658 1.280998 AGTGTTATGGCCGGTTTAGCT 59.719 47.619 1.90 0.00 0.00 3.32
1572 1659 1.746470 AGTGTTATGGCCGGTTTAGC 58.254 50.000 1.90 0.00 0.00 3.09
1573 1660 3.606687 AGAAGTGTTATGGCCGGTTTAG 58.393 45.455 1.90 0.00 0.00 1.85
1574 1661 3.602483 GAGAAGTGTTATGGCCGGTTTA 58.398 45.455 1.90 0.00 0.00 2.01
1575 1662 2.433436 GAGAAGTGTTATGGCCGGTTT 58.567 47.619 1.90 0.00 0.00 3.27
1576 1663 1.339727 GGAGAAGTGTTATGGCCGGTT 60.340 52.381 1.90 0.00 0.00 4.44
1577 1664 0.252197 GGAGAAGTGTTATGGCCGGT 59.748 55.000 1.90 0.00 0.00 5.28
1578 1665 0.463833 GGGAGAAGTGTTATGGCCGG 60.464 60.000 0.00 0.00 0.00 6.13
1579 1666 0.463833 GGGGAGAAGTGTTATGGCCG 60.464 60.000 0.00 0.00 0.00 6.13
1580 1667 0.463833 CGGGGAGAAGTGTTATGGCC 60.464 60.000 0.00 0.00 0.00 5.36
1581 1668 1.095807 GCGGGGAGAAGTGTTATGGC 61.096 60.000 0.00 0.00 0.00 4.40
1582 1669 0.463833 GGCGGGGAGAAGTGTTATGG 60.464 60.000 0.00 0.00 0.00 2.74
1583 1670 0.541863 AGGCGGGGAGAAGTGTTATG 59.458 55.000 0.00 0.00 0.00 1.90
1584 1671 1.761198 GTAGGCGGGGAGAAGTGTTAT 59.239 52.381 0.00 0.00 0.00 1.89
1585 1672 1.188863 GTAGGCGGGGAGAAGTGTTA 58.811 55.000 0.00 0.00 0.00 2.41
1586 1673 0.834687 TGTAGGCGGGGAGAAGTGTT 60.835 55.000 0.00 0.00 0.00 3.32
1587 1674 1.229082 TGTAGGCGGGGAGAAGTGT 60.229 57.895 0.00 0.00 0.00 3.55
1588 1675 1.218316 GTGTAGGCGGGGAGAAGTG 59.782 63.158 0.00 0.00 0.00 3.16
1589 1676 0.834687 TTGTGTAGGCGGGGAGAAGT 60.835 55.000 0.00 0.00 0.00 3.01
1590 1677 0.323629 TTTGTGTAGGCGGGGAGAAG 59.676 55.000 0.00 0.00 0.00 2.85
1591 1678 0.035739 GTTTGTGTAGGCGGGGAGAA 59.964 55.000 0.00 0.00 0.00 2.87
1592 1679 1.122632 TGTTTGTGTAGGCGGGGAGA 61.123 55.000 0.00 0.00 0.00 3.71
1593 1680 0.673644 CTGTTTGTGTAGGCGGGGAG 60.674 60.000 0.00 0.00 0.00 4.30
1594 1681 1.373435 CTGTTTGTGTAGGCGGGGA 59.627 57.895 0.00 0.00 0.00 4.81
1595 1682 2.332654 GCTGTTTGTGTAGGCGGGG 61.333 63.158 0.00 0.00 0.00 5.73
1596 1683 1.298859 GAGCTGTTTGTGTAGGCGGG 61.299 60.000 0.00 0.00 0.00 6.13
1597 1684 1.626654 CGAGCTGTTTGTGTAGGCGG 61.627 60.000 0.00 0.00 0.00 6.13
1598 1685 0.944311 ACGAGCTGTTTGTGTAGGCG 60.944 55.000 0.00 0.00 0.00 5.52
1599 1686 0.790814 GACGAGCTGTTTGTGTAGGC 59.209 55.000 0.00 0.00 0.00 3.93
1600 1687 1.000955 AGGACGAGCTGTTTGTGTAGG 59.999 52.381 0.00 0.00 0.00 3.18
1601 1688 2.329379 GAGGACGAGCTGTTTGTGTAG 58.671 52.381 0.00 0.00 0.00 2.74
1602 1689 1.335597 CGAGGACGAGCTGTTTGTGTA 60.336 52.381 0.00 0.00 42.66 2.90
1603 1690 0.597637 CGAGGACGAGCTGTTTGTGT 60.598 55.000 0.00 0.00 42.66 3.72
1604 1691 0.318699 TCGAGGACGAGCTGTTTGTG 60.319 55.000 0.00 0.00 43.81 3.33
1605 1692 2.038690 TCGAGGACGAGCTGTTTGT 58.961 52.632 0.00 0.00 43.81 2.83
1606 1693 4.966005 TCGAGGACGAGCTGTTTG 57.034 55.556 0.00 0.00 43.81 2.93
1614 1701 0.322277 ACCTTACAGCTCGAGGACGA 60.322 55.000 15.58 0.00 46.56 4.20
1615 1702 0.179161 CACCTTACAGCTCGAGGACG 60.179 60.000 15.58 0.00 41.26 4.79
1616 1703 0.173708 CCACCTTACAGCTCGAGGAC 59.826 60.000 15.58 0.00 34.61 3.85
1617 1704 0.970937 CCCACCTTACAGCTCGAGGA 60.971 60.000 15.58 0.00 34.61 3.71
1618 1705 1.517832 CCCACCTTACAGCTCGAGG 59.482 63.158 15.58 0.17 36.62 4.63
1619 1706 0.970937 TCCCCACCTTACAGCTCGAG 60.971 60.000 8.45 8.45 0.00 4.04
1620 1707 0.543410 TTCCCCACCTTACAGCTCGA 60.543 55.000 0.00 0.00 0.00 4.04
1621 1708 0.108138 CTTCCCCACCTTACAGCTCG 60.108 60.000 0.00 0.00 0.00 5.03
1622 1709 0.393132 GCTTCCCCACCTTACAGCTC 60.393 60.000 0.00 0.00 0.00 4.09
1623 1710 1.685820 GCTTCCCCACCTTACAGCT 59.314 57.895 0.00 0.00 0.00 4.24
1624 1711 1.745489 CGCTTCCCCACCTTACAGC 60.745 63.158 0.00 0.00 0.00 4.40
1625 1712 1.745489 GCGCTTCCCCACCTTACAG 60.745 63.158 0.00 0.00 0.00 2.74
1626 1713 1.774894 AAGCGCTTCCCCACCTTACA 61.775 55.000 18.98 0.00 0.00 2.41
1627 1714 1.002502 AAGCGCTTCCCCACCTTAC 60.003 57.895 18.98 0.00 0.00 2.34
1628 1715 1.002624 CAAGCGCTTCCCCACCTTA 60.003 57.895 22.21 0.00 0.00 2.69
1629 1716 2.282462 CAAGCGCTTCCCCACCTT 60.282 61.111 22.21 0.00 0.00 3.50
1635 1722 4.103103 GTTCCGCAAGCGCTTCCC 62.103 66.667 22.21 13.38 38.24 3.97
1636 1723 3.028366 GAGTTCCGCAAGCGCTTCC 62.028 63.158 22.21 11.23 38.24 3.46
1637 1724 2.476499 GAGTTCCGCAAGCGCTTC 59.524 61.111 22.21 14.13 38.24 3.86
1638 1725 3.050275 GGAGTTCCGCAAGCGCTT 61.050 61.111 18.98 18.98 38.24 4.68
1639 1726 3.941657 GAGGAGTTCCGCAAGCGCT 62.942 63.158 2.64 2.64 42.08 5.92
1640 1727 3.491652 GAGGAGTTCCGCAAGCGC 61.492 66.667 9.26 0.00 42.08 5.92
1641 1728 3.181967 CGAGGAGTTCCGCAAGCG 61.182 66.667 7.60 7.60 42.08 4.68
1642 1729 1.807573 CTCGAGGAGTTCCGCAAGC 60.808 63.158 3.91 0.00 42.08 4.01
1643 1730 1.153745 CCTCGAGGAGTTCCGCAAG 60.154 63.158 28.21 0.00 42.08 4.01
1644 1731 2.970639 CCTCGAGGAGTTCCGCAA 59.029 61.111 28.21 0.00 42.08 4.85
1645 1732 3.760035 GCCTCGAGGAGTTCCGCA 61.760 66.667 35.69 0.00 42.08 5.69
1646 1733 4.856607 CGCCTCGAGGAGTTCCGC 62.857 72.222 35.69 16.14 42.08 5.54
1647 1734 2.395367 GATCGCCTCGAGGAGTTCCG 62.395 65.000 35.69 26.22 39.91 4.30
1648 1735 1.360911 GATCGCCTCGAGGAGTTCC 59.639 63.158 35.69 19.54 39.91 3.62
1649 1736 0.456221 TTGATCGCCTCGAGGAGTTC 59.544 55.000 35.69 31.81 39.91 3.01
1650 1737 0.173708 GTTGATCGCCTCGAGGAGTT 59.826 55.000 35.69 26.14 39.91 3.01
1651 1738 1.668101 GGTTGATCGCCTCGAGGAGT 61.668 60.000 35.69 21.14 39.91 3.85
1652 1739 1.066587 GGTTGATCGCCTCGAGGAG 59.933 63.158 35.69 31.46 39.91 3.69
1653 1740 1.667154 CTGGTTGATCGCCTCGAGGA 61.667 60.000 35.69 16.06 39.91 3.71
1654 1741 1.227089 CTGGTTGATCGCCTCGAGG 60.227 63.158 27.83 27.83 39.91 4.63
1655 1742 1.880340 GCTGGTTGATCGCCTCGAG 60.880 63.158 5.13 5.13 39.91 4.04
1656 1743 2.184322 GCTGGTTGATCGCCTCGA 59.816 61.111 7.51 0.00 41.13 4.04
1657 1744 3.257561 CGCTGGTTGATCGCCTCG 61.258 66.667 7.51 7.14 0.00 4.63
1658 1745 2.125512 ACGCTGGTTGATCGCCTC 60.126 61.111 7.51 0.21 0.00 4.70
1659 1746 2.125512 GACGCTGGTTGATCGCCT 60.126 61.111 7.51 0.00 0.00 5.52
1660 1747 1.573829 TTTGACGCTGGTTGATCGCC 61.574 55.000 0.00 0.00 0.00 5.54
1661 1748 0.452784 GTTTGACGCTGGTTGATCGC 60.453 55.000 0.00 0.00 0.00 4.58
1662 1749 0.865111 TGTTTGACGCTGGTTGATCG 59.135 50.000 0.00 0.00 0.00 3.69
1663 1750 1.069227 GGTGTTTGACGCTGGTTGATC 60.069 52.381 0.00 0.00 0.00 2.92
1664 1751 0.951558 GGTGTTTGACGCTGGTTGAT 59.048 50.000 0.00 0.00 0.00 2.57
1665 1752 0.107410 AGGTGTTTGACGCTGGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
1666 1753 0.738389 AAGGTGTTTGACGCTGGTTG 59.262 50.000 0.00 0.00 0.00 3.77
1667 1754 1.021968 GAAGGTGTTTGACGCTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
1668 1755 0.180406 AGAAGGTGTTTGACGCTGGT 59.820 50.000 0.00 0.00 0.00 4.00
1669 1756 0.868406 GAGAAGGTGTTTGACGCTGG 59.132 55.000 0.00 0.00 0.00 4.85
1670 1757 0.508641 CGAGAAGGTGTTTGACGCTG 59.491 55.000 0.00 0.00 0.00 5.18
1671 1758 0.387929 TCGAGAAGGTGTTTGACGCT 59.612 50.000 0.00 0.00 0.00 5.07
1672 1759 0.507358 GTCGAGAAGGTGTTTGACGC 59.493 55.000 0.00 0.00 0.00 5.19
1673 1760 1.787155 CTGTCGAGAAGGTGTTTGACG 59.213 52.381 0.00 0.00 0.00 4.35
1674 1761 1.527311 GCTGTCGAGAAGGTGTTTGAC 59.473 52.381 0.00 0.00 0.00 3.18
1675 1762 1.412710 AGCTGTCGAGAAGGTGTTTGA 59.587 47.619 0.00 0.00 0.00 2.69
1676 1763 1.871080 AGCTGTCGAGAAGGTGTTTG 58.129 50.000 0.00 0.00 0.00 2.93
1677 1764 2.028930 CCTAGCTGTCGAGAAGGTGTTT 60.029 50.000 9.44 0.00 0.00 2.83
1678 1765 1.546476 CCTAGCTGTCGAGAAGGTGTT 59.454 52.381 9.44 0.00 0.00 3.32
1679 1766 1.178276 CCTAGCTGTCGAGAAGGTGT 58.822 55.000 9.44 0.00 0.00 4.16
1680 1767 0.457851 CCCTAGCTGTCGAGAAGGTG 59.542 60.000 9.44 1.57 0.00 4.00
1681 1768 1.324005 GCCCTAGCTGTCGAGAAGGT 61.324 60.000 0.00 5.22 35.50 3.50
1682 1769 1.323271 TGCCCTAGCTGTCGAGAAGG 61.323 60.000 0.00 0.00 40.80 3.46
1683 1770 0.102120 CTGCCCTAGCTGTCGAGAAG 59.898 60.000 0.00 0.00 40.80 2.85
1684 1771 2.193532 CTGCCCTAGCTGTCGAGAA 58.806 57.895 0.00 0.00 40.80 2.87
1685 1772 3.926003 CTGCCCTAGCTGTCGAGA 58.074 61.111 0.00 0.00 40.80 4.04
1694 1781 3.854669 CCGACCTGGCTGCCCTAG 61.855 72.222 17.53 7.69 0.00 3.02
1725 1812 2.271800 GTTGCAGACTACATTCCGGAG 58.728 52.381 3.34 0.00 0.00 4.63
1726 1813 1.066430 GGTTGCAGACTACATTCCGGA 60.066 52.381 0.00 0.00 0.00 5.14
1727 1814 1.066143 AGGTTGCAGACTACATTCCGG 60.066 52.381 0.00 0.00 0.00 5.14
1728 1815 2.271800 GAGGTTGCAGACTACATTCCG 58.728 52.381 0.00 0.00 0.00 4.30
1729 1816 2.027192 TGGAGGTTGCAGACTACATTCC 60.027 50.000 0.84 2.28 31.87 3.01
1730 1817 3.265791 CTGGAGGTTGCAGACTACATTC 58.734 50.000 5.24 0.00 38.14 2.67
1731 1818 2.026822 CCTGGAGGTTGCAGACTACATT 60.027 50.000 5.24 0.00 38.14 2.71
1732 1819 1.556911 CCTGGAGGTTGCAGACTACAT 59.443 52.381 5.24 0.00 38.14 2.29
1733 1820 0.976641 CCTGGAGGTTGCAGACTACA 59.023 55.000 4.77 4.77 38.14 2.74
1734 1821 3.842869 CCTGGAGGTTGCAGACTAC 57.157 57.895 0.00 0.00 38.14 2.73
1745 1832 0.741915 GCGACTCTTCTACCTGGAGG 59.258 60.000 0.00 0.00 42.17 4.30
1746 1833 0.378962 CGCGACTCTTCTACCTGGAG 59.621 60.000 0.00 0.00 0.00 3.86
1747 1834 1.030488 CCGCGACTCTTCTACCTGGA 61.030 60.000 8.23 0.00 0.00 3.86
1748 1835 1.433879 CCGCGACTCTTCTACCTGG 59.566 63.158 8.23 0.00 0.00 4.45
1749 1836 1.433879 CCCGCGACTCTTCTACCTG 59.566 63.158 8.23 0.00 0.00 4.00
1750 1837 2.416432 GCCCGCGACTCTTCTACCT 61.416 63.158 8.23 0.00 0.00 3.08
1751 1838 2.104530 GCCCGCGACTCTTCTACC 59.895 66.667 8.23 0.00 0.00 3.18
1752 1839 1.226717 CTGCCCGCGACTCTTCTAC 60.227 63.158 8.23 0.00 0.00 2.59
1753 1840 2.415608 CCTGCCCGCGACTCTTCTA 61.416 63.158 8.23 0.00 0.00 2.10
1754 1841 3.764466 CCTGCCCGCGACTCTTCT 61.764 66.667 8.23 0.00 0.00 2.85
1779 1866 4.509737 GACGAGCCCTACACGCCC 62.510 72.222 0.00 0.00 35.59 6.13
1780 1867 4.849329 CGACGAGCCCTACACGCC 62.849 72.222 0.00 0.00 35.59 5.68
1791 1878 1.215014 TGTGCTTCAACTGCGACGAG 61.215 55.000 0.00 0.00 0.00 4.18
1792 1879 0.808060 TTGTGCTTCAACTGCGACGA 60.808 50.000 0.00 0.00 0.00 4.20
1793 1880 0.235665 ATTGTGCTTCAACTGCGACG 59.764 50.000 0.00 0.00 38.97 5.12
1794 1881 1.400242 GGATTGTGCTTCAACTGCGAC 60.400 52.381 0.00 0.00 38.97 5.19
1795 1882 0.874390 GGATTGTGCTTCAACTGCGA 59.126 50.000 0.00 0.00 38.97 5.10
1796 1883 0.877071 AGGATTGTGCTTCAACTGCG 59.123 50.000 0.00 0.00 38.97 5.18
1797 1884 2.608752 CCAAGGATTGTGCTTCAACTGC 60.609 50.000 0.00 0.00 46.99 4.40
1798 1885 2.608752 GCCAAGGATTGTGCTTCAACTG 60.609 50.000 0.00 0.00 46.99 3.16
1799 1886 1.615392 GCCAAGGATTGTGCTTCAACT 59.385 47.619 0.00 0.00 46.99 3.16
1800 1887 1.666888 CGCCAAGGATTGTGCTTCAAC 60.667 52.381 0.00 0.00 46.99 3.18
1801 1888 0.597568 CGCCAAGGATTGTGCTTCAA 59.402 50.000 0.00 0.00 46.99 2.69
1802 1889 1.243342 CCGCCAAGGATTGTGCTTCA 61.243 55.000 0.00 0.00 46.99 3.02
1803 1890 1.508088 CCGCCAAGGATTGTGCTTC 59.492 57.895 0.00 0.00 46.99 3.86
1804 1891 2.639327 GCCGCCAAGGATTGTGCTT 61.639 57.895 0.00 0.00 46.99 3.91
1805 1892 3.064324 GCCGCCAAGGATTGTGCT 61.064 61.111 0.00 0.00 46.99 4.40
1806 1893 4.481112 CGCCGCCAAGGATTGTGC 62.481 66.667 0.00 0.00 46.99 4.57
1807 1894 2.745884 TCGCCGCCAAGGATTGTG 60.746 61.111 0.00 0.00 46.99 3.33
1808 1895 2.746277 GTCGCCGCCAAGGATTGT 60.746 61.111 0.00 0.00 46.99 2.71
1830 1917 1.032657 TCACCTCAGCCGAGCTACTC 61.033 60.000 0.00 0.00 36.40 2.59
1831 1918 1.000771 TCACCTCAGCCGAGCTACT 60.001 57.895 0.00 0.00 36.40 2.57
1832 1919 1.435515 CTCACCTCAGCCGAGCTAC 59.564 63.158 0.00 0.00 36.40 3.58
1833 1920 2.418910 GCTCACCTCAGCCGAGCTA 61.419 63.158 6.35 0.00 46.86 3.32
1834 1921 3.768922 GCTCACCTCAGCCGAGCT 61.769 66.667 6.35 0.00 46.86 4.09
1843 1930 4.162690 ATTCCGCCGGCTCACCTC 62.163 66.667 26.68 0.00 0.00 3.85
1844 1931 4.473520 CATTCCGCCGGCTCACCT 62.474 66.667 26.68 1.80 0.00 4.00
1945 2032 4.452733 CTTCACCTCCCGGACCGC 62.453 72.222 8.86 0.00 0.00 5.68
1946 2033 3.771160 CCTTCACCTCCCGGACCG 61.771 72.222 6.99 6.99 0.00 4.79
1947 2034 3.400054 CCCTTCACCTCCCGGACC 61.400 72.222 0.73 0.00 0.00 4.46
1948 2035 1.900545 CTTCCCTTCACCTCCCGGAC 61.901 65.000 0.73 0.00 0.00 4.79
1949 2036 1.612442 CTTCCCTTCACCTCCCGGA 60.612 63.158 0.73 0.00 0.00 5.14
1950 2037 2.670148 CCTTCCCTTCACCTCCCGG 61.670 68.421 0.00 0.00 0.00 5.73
1951 2038 2.990479 CCTTCCCTTCACCTCCCG 59.010 66.667 0.00 0.00 0.00 5.14
1952 2039 2.677848 GCCTTCCCTTCACCTCCC 59.322 66.667 0.00 0.00 0.00 4.30
2411 2517 3.996124 CGATCCCGGCCTGGCTAG 61.996 72.222 19.68 12.81 35.87 3.42
2767 3318 2.813908 GCCGATCCAGAACGCGTT 60.814 61.111 26.97 26.97 0.00 4.84
2845 3396 0.912486 GGCATCTCCCTGTACTTGGT 59.088 55.000 0.00 0.00 0.00 3.67
3019 3594 3.285215 GCCGCTGCCCATCATCAG 61.285 66.667 0.00 0.00 0.00 2.90
3198 3824 0.178903 TATCCCTATTGCCCGGCTCT 60.179 55.000 11.61 0.00 0.00 4.09
3305 3933 2.128771 GGCAATCTTAGCCCACAAGA 57.871 50.000 0.00 0.00 46.50 3.02
3428 4067 1.100510 CATTCTCGTACGGAGTCCCA 58.899 55.000 16.52 0.00 43.93 4.37
3440 4079 0.035820 TCCGGAAAACCCCATTCTCG 60.036 55.000 0.00 0.00 0.00 4.04
3467 4106 0.666577 GGAAGTCACGGGACAAGACG 60.667 60.000 22.01 0.00 46.80 4.18
3538 4177 2.845363 TTCATGAGCACTTGAGCAGA 57.155 45.000 0.00 0.00 36.85 4.26
3582 4221 9.483916 TGTCGAGAAATAATCAAGTAAAGAACA 57.516 29.630 0.00 0.00 0.00 3.18
3732 4371 5.978814 ACTTACCAGTAGAACATGCCTTAG 58.021 41.667 0.00 0.00 0.00 2.18
3779 4418 7.863722 TGATGTATTACCCCTAGCAAAACTAA 58.136 34.615 0.00 0.00 0.00 2.24
3947 4590 1.237285 AAGGTCACCTTGCATGACGC 61.237 55.000 8.82 6.20 46.19 5.19
3950 4593 2.622942 GTCAAAAGGTCACCTTGCATGA 59.377 45.455 10.77 12.47 43.92 3.07
3961 4604 6.084326 TGCTCAATAAAAGGTCAAAAGGTC 57.916 37.500 0.00 0.00 0.00 3.85
3972 4615 8.206325 AGTGATACACTGATGCTCAATAAAAG 57.794 34.615 3.54 0.00 43.63 2.27
4412 5055 1.451936 GTCCAACAGTGGGCTCAGT 59.548 57.895 0.00 0.00 46.89 3.41
4504 5147 5.760484 ATCTCTTCAAGCTCTTCTTCCTT 57.240 39.130 0.00 0.00 31.27 3.36
4587 5230 0.177604 CTCTCATGTCACCTGGAGCC 59.822 60.000 0.00 0.00 0.00 4.70
4696 5340 5.971202 ACAACAATTCACATTCTTTCGACAC 59.029 36.000 0.00 0.00 0.00 3.67
4718 5362 6.928348 TTTTTCAGACAGAGGGAGTATACA 57.072 37.500 5.50 0.00 0.00 2.29
4742 5386 8.992073 GCCTTTTTATTCATTTTGATGACAAGT 58.008 29.630 0.00 0.00 37.32 3.16
4743 5387 8.991026 TGCCTTTTTATTCATTTTGATGACAAG 58.009 29.630 0.00 0.00 37.32 3.16
4744 5388 8.899427 TGCCTTTTTATTCATTTTGATGACAA 57.101 26.923 0.00 0.00 0.00 3.18
4745 5389 8.937884 CATGCCTTTTTATTCATTTTGATGACA 58.062 29.630 0.00 0.00 0.00 3.58
4746 5390 8.938906 ACATGCCTTTTTATTCATTTTGATGAC 58.061 29.630 0.00 0.00 0.00 3.06
4754 5398 9.866655 TCCTAGATACATGCCTTTTTATTCATT 57.133 29.630 0.00 0.00 0.00 2.57
4755 5399 9.289782 GTCCTAGATACATGCCTTTTTATTCAT 57.710 33.333 0.00 0.00 0.00 2.57
4756 5400 8.494433 AGTCCTAGATACATGCCTTTTTATTCA 58.506 33.333 0.00 0.00 0.00 2.57
4757 5401 8.910351 AGTCCTAGATACATGCCTTTTTATTC 57.090 34.615 0.00 0.00 0.00 1.75
4764 5408 9.769677 TGTATATTAGTCCTAGATACATGCCTT 57.230 33.333 0.00 0.00 30.11 4.35
4765 5409 9.944079 ATGTATATTAGTCCTAGATACATGCCT 57.056 33.333 15.86 0.00 40.48 4.75
4797 5441 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
4798 5442 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
4799 5443 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
4800 5444 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
4801 5445 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
4802 5446 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
4810 5454 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4811 5455 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4812 5456 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4813 5457 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4814 5458 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4815 5459 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4816 5460 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4817 5461 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4818 5462 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4819 5463 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4820 5464 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4821 5465 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4822 5466 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4823 5467 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4824 5468 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4825 5469 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4826 5470 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4827 5471 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4828 5472 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4829 5473 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4830 5474 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4831 5475 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
4832 5476 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
4833 5477 0.467659 AAGATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
4834 5478 0.669077 CAAGATACTCCCTCCGTCCG 59.331 60.000 0.00 0.00 0.00 4.79
4835 5479 0.389757 GCAAGATACTCCCTCCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
4836 5480 1.112113 TGCAAGATACTCCCTCCGTC 58.888 55.000 0.00 0.00 0.00 4.79
4837 5481 1.689273 GATGCAAGATACTCCCTCCGT 59.311 52.381 0.00 0.00 0.00 4.69
4838 5482 1.688735 TGATGCAAGATACTCCCTCCG 59.311 52.381 0.00 0.00 0.00 4.63
4839 5483 3.118261 TGTTGATGCAAGATACTCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
4840 5484 3.873952 GTGTTGATGCAAGATACTCCCTC 59.126 47.826 0.00 0.00 0.00 4.30
4841 5485 3.521126 AGTGTTGATGCAAGATACTCCCT 59.479 43.478 0.00 0.00 0.00 4.20
4842 5486 3.878778 AGTGTTGATGCAAGATACTCCC 58.121 45.455 0.00 0.00 0.00 4.30
4843 5487 4.697352 ACAAGTGTTGATGCAAGATACTCC 59.303 41.667 0.00 0.00 0.00 3.85
4844 5488 5.180117 ACACAAGTGTTGATGCAAGATACTC 59.820 40.000 0.00 0.00 41.83 2.59
4845 5489 5.065914 ACACAAGTGTTGATGCAAGATACT 58.934 37.500 0.00 0.00 41.83 2.12
4846 5490 5.362556 ACACAAGTGTTGATGCAAGATAC 57.637 39.130 0.00 0.00 41.83 2.24
4939 5583 3.134442 AGCTCAAATGCAGGAAAAACCAA 59.866 39.130 0.00 0.00 42.04 3.67
4952 5596 5.917541 AAAGTTGCAAATGAGCTCAAATG 57.082 34.783 22.50 21.93 34.99 2.32
5036 5684 9.762381 TCATCTGTAAACTTACCCCAAAAATAT 57.238 29.630 0.00 0.00 32.72 1.28
5038 5686 7.947890 TCTCATCTGTAAACTTACCCCAAAAAT 59.052 33.333 0.00 0.00 32.72 1.82
5043 5691 5.546499 ACTTCTCATCTGTAAACTTACCCCA 59.454 40.000 0.00 0.00 32.72 4.96
5088 5736 0.759346 AAACGCCACTCTGTTCTCCT 59.241 50.000 0.00 0.00 0.00 3.69
5100 5748 3.234630 CTCGGGTGGAGAAACGCCA 62.235 63.158 0.00 0.00 46.23 5.69
5131 5780 6.909895 TGTTTTGAATTCACTGTTCATACACG 59.090 34.615 7.89 0.00 35.68 4.49
5218 5867 6.793492 AGACACTAGAAAGCAAAATCAGAC 57.207 37.500 0.00 0.00 0.00 3.51
5237 5933 2.163818 AAAATCGTGCCGAGAAGACA 57.836 45.000 3.76 0.00 39.91 3.41
5299 5997 5.356751 CCAGATGAACGGTAAATTCAATGGA 59.643 40.000 13.23 0.00 43.28 3.41
5313 6011 1.220206 AGCTGCTCCCAGATGAACG 59.780 57.895 0.00 0.00 41.77 3.95
5366 6064 3.709653 GTCCAGTACCAATGATGACCCTA 59.290 47.826 0.00 0.00 0.00 3.53
5367 6065 2.505819 GTCCAGTACCAATGATGACCCT 59.494 50.000 0.00 0.00 0.00 4.34
5368 6066 2.238646 TGTCCAGTACCAATGATGACCC 59.761 50.000 0.00 0.00 0.00 4.46
5369 6067 3.627395 TGTCCAGTACCAATGATGACC 57.373 47.619 0.00 0.00 0.00 4.02
5428 6139 4.421058 GGCCAAGAATTCAACGAATAACC 58.579 43.478 8.44 0.00 31.46 2.85
5432 6143 2.231235 GTGGGCCAAGAATTCAACGAAT 59.769 45.455 8.40 0.00 33.25 3.34
5435 6146 1.247567 AGTGGGCCAAGAATTCAACG 58.752 50.000 8.40 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.