Multiple sequence alignment - TraesCS6D01G142700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G142700 chr6D 100.000 3548 0 0 1 3548 112952261 112955808 0.000000e+00 6553.0
1 TraesCS6D01G142700 chr6D 79.602 201 19 9 3100 3280 468244800 468244998 1.340000e-24 124.0
2 TraesCS6D01G142700 chr6A 92.708 1344 55 19 1697 3004 140723826 140725162 0.000000e+00 1899.0
3 TraesCS6D01G142700 chr6A 95.628 549 19 2 741 1288 140723279 140723823 0.000000e+00 876.0
4 TraesCS6D01G142700 chr6A 85.695 727 61 16 1 698 140722558 140723270 0.000000e+00 726.0
5 TraesCS6D01G142700 chr6A 82.022 267 15 11 2996 3262 140730253 140730486 2.790000e-46 196.0
6 TraesCS6D01G142700 chr6B 91.701 964 43 10 1697 2633 202509878 202510831 0.000000e+00 1303.0
7 TraesCS6D01G142700 chr6B 95.079 569 17 6 724 1288 202509314 202509875 0.000000e+00 885.0
8 TraesCS6D01G142700 chr6B 93.092 579 11 8 2664 3239 202510827 202511379 0.000000e+00 821.0
9 TraesCS6D01G142700 chr6B 94.118 51 1 1 3308 3356 202511397 202511447 3.800000e-10 76.8
10 TraesCS6D01G142700 chr1D 96.030 403 9 6 1292 1691 432405293 432405691 0.000000e+00 649.0
11 TraesCS6D01G142700 chr1D 94.819 386 16 4 1292 1675 486066140 486066523 1.820000e-167 599.0
12 TraesCS6D01G142700 chr1D 93.120 407 15 7 1292 1689 228293916 228293514 5.100000e-163 584.0
13 TraesCS6D01G142700 chr1D 95.276 127 6 0 3403 3529 46107763 46107637 6.010000e-48 202.0
14 TraesCS6D01G142700 chr2D 95.545 404 13 4 1292 1691 94876113 94876515 2.990000e-180 641.0
15 TraesCS6D01G142700 chr2D 93.120 407 17 7 1292 1691 538776486 538776888 1.420000e-163 586.0
16 TraesCS6D01G142700 chr2D 79.710 207 20 8 3100 3285 88755839 88755634 2.870000e-26 130.0
17 TraesCS6D01G142700 chr7D 95.012 401 11 7 1292 1691 446554692 446555084 3.890000e-174 621.0
18 TraesCS6D01G142700 chr7D 92.857 154 5 1 3395 3548 134503091 134503238 5.960000e-53 219.0
19 TraesCS6D01G142700 chr7D 86.139 202 25 1 997 1195 590429089 590429290 7.710000e-52 215.0
20 TraesCS6D01G142700 chr7D 82.946 129 21 1 2419 2546 590430162 590430290 8.050000e-22 115.0
21 TraesCS6D01G142700 chr4D 94.030 402 15 8 1292 1691 295569365 295568971 5.070000e-168 601.0
22 TraesCS6D01G142700 chr4D 96.667 150 5 0 3399 3548 442751397 442751248 2.110000e-62 250.0
23 TraesCS6D01G142700 chr5D 93.532 402 23 3 1291 1691 493912198 493911799 2.360000e-166 595.0
24 TraesCS6D01G142700 chr5D 92.927 410 17 9 1292 1691 445062097 445061690 1.420000e-163 586.0
25 TraesCS6D01G142700 chr5A 93.590 156 9 1 3394 3548 705529870 705529715 7.660000e-57 231.0
26 TraesCS6D01G142700 chr1B 95.205 146 7 0 3403 3548 49095651 49095796 7.660000e-57 231.0
27 TraesCS6D01G142700 chr3A 92.810 153 10 1 3397 3548 300791152 300791000 1.660000e-53 220.0
28 TraesCS6D01G142700 chr3A 94.203 69 3 1 3107 3175 443094052 443094119 1.740000e-18 104.0
29 TraesCS6D01G142700 chr7B 87.113 194 21 2 991 1180 665413896 665414089 2.140000e-52 217.0
30 TraesCS6D01G142700 chr7B 95.276 127 6 0 3403 3529 215233127 215233253 6.010000e-48 202.0
31 TraesCS6D01G142700 chr7B 85.859 99 11 1 997 1092 665410687 665410785 6.270000e-18 102.0
32 TraesCS6D01G142700 chr7B 91.045 67 5 1 3100 3166 19950814 19950749 4.880000e-14 89.8
33 TraesCS6D01G142700 chr5B 93.151 146 8 1 3403 3548 22528415 22528272 2.770000e-51 213.0
34 TraesCS6D01G142700 chr3B 91.781 146 12 0 3403 3548 158147459 158147604 1.670000e-48 204.0
35 TraesCS6D01G142700 chr3B 81.893 243 23 6 3107 3329 425676755 425676996 6.050000e-43 185.0
36 TraesCS6D01G142700 chr3D 79.681 251 28 5 3100 3329 328514524 328514772 3.670000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G142700 chr6D 112952261 112955808 3547 False 6553.00 6553 100.000000 1 3548 1 chr6D.!!$F1 3547
1 TraesCS6D01G142700 chr6A 140722558 140725162 2604 False 1167.00 1899 91.343667 1 3004 3 chr6A.!!$F2 3003
2 TraesCS6D01G142700 chr6B 202509314 202511447 2133 False 771.45 1303 93.497500 724 3356 4 chr6B.!!$F1 2632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 920 0.178947 CTAAGCCGATCTCTCCCCCT 60.179 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2834 2927 0.679002 TTCAGAGAATGCAGGCAGCC 60.679 55.0 1.84 1.84 44.83 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.520748 AGGTGAAACTTCCCTGAATATGT 57.479 39.130 0.34 0.00 36.74 2.29
52 53 9.987272 CCTGAATATGTTTTTCTTTTCCTTTCT 57.013 29.630 0.00 0.00 0.00 2.52
98 99 7.922699 TTTCTATTTCCTTTTTCCTTTCCCA 57.077 32.000 0.00 0.00 0.00 4.37
105 106 7.439108 TTCCTTTTTCCTTTCCCATGTTTTA 57.561 32.000 0.00 0.00 0.00 1.52
183 184 5.788041 CCTTTTTGTTTTTCAACTTGCGAAC 59.212 36.000 0.00 0.00 35.61 3.95
275 276 9.701355 AAATTCGTGAACATTTTTCACAAATTC 57.299 25.926 12.56 0.00 42.08 2.17
372 374 2.547007 GGGAACACATTTTTGAACCGGG 60.547 50.000 6.32 0.00 0.00 5.73
373 375 2.362717 GGAACACATTTTTGAACCGGGA 59.637 45.455 6.32 0.00 0.00 5.14
414 416 4.343814 GGGAACAGTTTTTGGAATTCCTGA 59.656 41.667 24.73 11.15 36.62 3.86
502 511 9.927668 TTGGGAAGAATTATTGAAATTCTCAAC 57.072 29.630 12.10 7.95 46.80 3.18
603 632 6.906157 ACATTTGTTGAATCTGTGAGGATT 57.094 33.333 0.00 0.00 38.47 3.01
633 662 9.881529 AATTTTCCAAACATTTTTCGATTCATG 57.118 25.926 0.00 0.00 0.00 3.07
637 666 8.830201 TCCAAACATTTTTCGATTCATGAAAT 57.170 26.923 13.09 1.06 35.43 2.17
679 708 0.392706 CCAACAACAAAGGGGCTTCC 59.607 55.000 0.00 0.00 0.00 3.46
712 741 3.387947 CCGCCCCGTAGTTCACCT 61.388 66.667 0.00 0.00 0.00 4.00
713 742 2.183555 CGCCCCGTAGTTCACCTC 59.816 66.667 0.00 0.00 0.00 3.85
714 743 2.582978 GCCCCGTAGTTCACCTCC 59.417 66.667 0.00 0.00 0.00 4.30
715 744 2.288025 GCCCCGTAGTTCACCTCCA 61.288 63.158 0.00 0.00 0.00 3.86
716 745 1.833787 GCCCCGTAGTTCACCTCCAA 61.834 60.000 0.00 0.00 0.00 3.53
717 746 0.688487 CCCCGTAGTTCACCTCCAAA 59.312 55.000 0.00 0.00 0.00 3.28
718 747 1.072648 CCCCGTAGTTCACCTCCAAAA 59.927 52.381 0.00 0.00 0.00 2.44
719 748 2.148768 CCCGTAGTTCACCTCCAAAAC 58.851 52.381 0.00 0.00 0.00 2.43
720 749 2.148768 CCGTAGTTCACCTCCAAAACC 58.851 52.381 0.00 0.00 0.00 3.27
721 750 2.485835 CCGTAGTTCACCTCCAAAACCA 60.486 50.000 0.00 0.00 0.00 3.67
722 751 2.806244 CGTAGTTCACCTCCAAAACCAG 59.194 50.000 0.00 0.00 0.00 4.00
723 752 1.692411 AGTTCACCTCCAAAACCAGC 58.308 50.000 0.00 0.00 0.00 4.85
724 753 1.215423 AGTTCACCTCCAAAACCAGCT 59.785 47.619 0.00 0.00 0.00 4.24
725 754 2.031870 GTTCACCTCCAAAACCAGCTT 58.968 47.619 0.00 0.00 0.00 3.74
726 755 3.117663 AGTTCACCTCCAAAACCAGCTTA 60.118 43.478 0.00 0.00 0.00 3.09
727 756 2.858745 TCACCTCCAAAACCAGCTTAC 58.141 47.619 0.00 0.00 0.00 2.34
728 757 2.441750 TCACCTCCAAAACCAGCTTACT 59.558 45.455 0.00 0.00 0.00 2.24
729 758 2.814336 CACCTCCAAAACCAGCTTACTC 59.186 50.000 0.00 0.00 0.00 2.59
730 759 2.224793 ACCTCCAAAACCAGCTTACTCC 60.225 50.000 0.00 0.00 0.00 3.85
731 760 2.040412 CCTCCAAAACCAGCTTACTCCT 59.960 50.000 0.00 0.00 0.00 3.69
732 761 3.263425 CCTCCAAAACCAGCTTACTCCTA 59.737 47.826 0.00 0.00 0.00 2.94
733 762 4.080299 CCTCCAAAACCAGCTTACTCCTAT 60.080 45.833 0.00 0.00 0.00 2.57
734 763 5.501156 CTCCAAAACCAGCTTACTCCTATT 58.499 41.667 0.00 0.00 0.00 1.73
873 902 3.883744 CTTCCGCAAGCGACCCACT 62.884 63.158 16.97 0.00 42.83 4.00
887 916 0.676736 CCCACTAAGCCGATCTCTCC 59.323 60.000 0.00 0.00 0.00 3.71
888 917 0.676736 CCACTAAGCCGATCTCTCCC 59.323 60.000 0.00 0.00 0.00 4.30
889 918 0.676736 CACTAAGCCGATCTCTCCCC 59.323 60.000 0.00 0.00 0.00 4.81
890 919 0.470268 ACTAAGCCGATCTCTCCCCC 60.470 60.000 0.00 0.00 0.00 5.40
891 920 0.178947 CTAAGCCGATCTCTCCCCCT 60.179 60.000 0.00 0.00 0.00 4.79
892 921 0.264955 TAAGCCGATCTCTCCCCCTT 59.735 55.000 0.00 0.00 0.00 3.95
893 922 1.051556 AAGCCGATCTCTCCCCCTTC 61.052 60.000 0.00 0.00 0.00 3.46
917 948 2.816958 CTGCGCTGCATCTTCCGT 60.817 61.111 9.73 0.00 38.13 4.69
1222 1254 3.316573 CTTTTCGCCCCTCTCCGCT 62.317 63.158 0.00 0.00 0.00 5.52
1288 1320 2.912956 TGCATCTAGGACCCTGAAGTTT 59.087 45.455 0.00 0.00 0.00 2.66
1289 1321 3.330701 TGCATCTAGGACCCTGAAGTTTT 59.669 43.478 0.00 0.00 0.00 2.43
1290 1322 4.202567 TGCATCTAGGACCCTGAAGTTTTT 60.203 41.667 0.00 0.00 0.00 1.94
1291 1323 4.396478 GCATCTAGGACCCTGAAGTTTTTC 59.604 45.833 0.00 0.00 0.00 2.29
1292 1324 4.267349 TCTAGGACCCTGAAGTTTTTCG 57.733 45.455 0.00 0.00 36.04 3.46
1293 1325 3.899360 TCTAGGACCCTGAAGTTTTTCGA 59.101 43.478 0.00 0.00 36.04 3.71
1294 1326 3.570912 AGGACCCTGAAGTTTTTCGAA 57.429 42.857 0.00 0.00 36.04 3.71
1295 1327 3.893521 AGGACCCTGAAGTTTTTCGAAA 58.106 40.909 6.47 6.47 36.04 3.46
1296 1328 3.883489 AGGACCCTGAAGTTTTTCGAAAG 59.117 43.478 10.98 0.00 36.04 2.62
1297 1329 3.630769 GGACCCTGAAGTTTTTCGAAAGT 59.369 43.478 10.98 2.06 36.04 2.66
1298 1330 4.261072 GGACCCTGAAGTTTTTCGAAAGTC 60.261 45.833 10.98 10.89 36.04 3.01
1299 1331 4.266714 ACCCTGAAGTTTTTCGAAAGTCA 58.733 39.130 10.98 11.78 36.04 3.41
1300 1332 4.887655 ACCCTGAAGTTTTTCGAAAGTCAT 59.112 37.500 10.98 1.63 36.04 3.06
1301 1333 5.008712 ACCCTGAAGTTTTTCGAAAGTCATC 59.991 40.000 10.98 10.66 36.04 2.92
1302 1334 5.239525 CCCTGAAGTTTTTCGAAAGTCATCT 59.760 40.000 10.98 4.06 36.04 2.90
1303 1335 6.238759 CCCTGAAGTTTTTCGAAAGTCATCTT 60.239 38.462 10.98 11.43 36.04 2.40
1304 1336 7.196331 CCTGAAGTTTTTCGAAAGTCATCTTT 58.804 34.615 10.98 0.92 45.24 2.52
1305 1337 7.702348 CCTGAAGTTTTTCGAAAGTCATCTTTT 59.298 33.333 10.98 0.00 42.99 2.27
1306 1338 8.393395 TGAAGTTTTTCGAAAGTCATCTTTTG 57.607 30.769 10.98 0.00 42.99 2.44
1307 1339 8.240682 TGAAGTTTTTCGAAAGTCATCTTTTGA 58.759 29.630 10.98 6.56 46.33 2.69
1308 1340 9.237846 GAAGTTTTTCGAAAGTCATCTTTTGAT 57.762 29.630 10.98 0.00 46.83 2.57
1309 1341 8.788409 AGTTTTTCGAAAGTCATCTTTTGATC 57.212 30.769 10.98 0.00 46.83 2.92
1310 1342 7.862873 AGTTTTTCGAAAGTCATCTTTTGATCC 59.137 33.333 10.98 2.25 46.83 3.36
1311 1343 5.880054 TTCGAAAGTCATCTTTTGATCCC 57.120 39.130 0.00 0.00 46.83 3.85
1312 1344 3.932710 TCGAAAGTCATCTTTTGATCCCG 59.067 43.478 6.56 0.00 44.43 5.14
1313 1345 3.932710 CGAAAGTCATCTTTTGATCCCGA 59.067 43.478 2.79 0.00 43.87 5.14
1314 1346 4.033358 CGAAAGTCATCTTTTGATCCCGAG 59.967 45.833 2.79 0.00 43.87 4.63
1315 1347 2.911484 AGTCATCTTTTGATCCCGAGC 58.089 47.619 0.00 0.00 36.97 5.03
1316 1348 2.503356 AGTCATCTTTTGATCCCGAGCT 59.497 45.455 0.00 0.00 36.97 4.09
1317 1349 2.869192 GTCATCTTTTGATCCCGAGCTC 59.131 50.000 2.73 2.73 36.97 4.09
1318 1350 2.501316 TCATCTTTTGATCCCGAGCTCA 59.499 45.455 15.40 0.00 36.97 4.26
1319 1351 3.135348 TCATCTTTTGATCCCGAGCTCAT 59.865 43.478 15.40 0.00 36.97 2.90
1320 1352 4.344968 TCATCTTTTGATCCCGAGCTCATA 59.655 41.667 15.40 0.00 36.97 2.15
1321 1353 4.963318 TCTTTTGATCCCGAGCTCATAT 57.037 40.909 15.40 3.21 0.00 1.78
1322 1354 4.635223 TCTTTTGATCCCGAGCTCATATG 58.365 43.478 15.40 0.00 0.00 1.78
1323 1355 2.462456 TTGATCCCGAGCTCATATGC 57.538 50.000 15.40 0.11 0.00 3.14
1324 1356 8.431815 ATCTTTTGATCCCGAGCTCATATGCT 62.432 42.308 15.40 0.00 39.52 3.79
1338 1370 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
1339 1371 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
1340 1372 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
1341 1373 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
1342 1374 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
1343 1375 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
1344 1376 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
1345 1377 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
1346 1378 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
1347 1379 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
1348 1380 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
1349 1381 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
1350 1382 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
1399 1431 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
1400 1432 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
1401 1433 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
1402 1434 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
1403 1435 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
1404 1436 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
1405 1437 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
1406 1438 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
1407 1439 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
1408 1440 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
1409 1441 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
1410 1442 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
1411 1443 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
1412 1444 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
1413 1445 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
1414 1446 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
1415 1447 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
1416 1448 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
1417 1449 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
1418 1450 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
1419 1451 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
1420 1452 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
1421 1453 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
1422 1454 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
1423 1455 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
1424 1456 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
1425 1457 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
1426 1458 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
1427 1459 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
1428 1460 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
1429 1461 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
1430 1462 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
1431 1463 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
1432 1464 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
1433 1465 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
1434 1466 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
1435 1467 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
1436 1468 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
1437 1469 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
1438 1470 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
1439 1471 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
1440 1472 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
1441 1473 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
1442 1474 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
1443 1475 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
1480 1512 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
1481 1513 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
1482 1514 5.362263 ACAAATTCAGTGCTTCAAAATGCT 58.638 33.333 0.00 0.00 0.00 3.79
1483 1515 5.818857 ACAAATTCAGTGCTTCAAAATGCTT 59.181 32.000 0.00 0.00 0.00 3.91
1484 1516 6.316890 ACAAATTCAGTGCTTCAAAATGCTTT 59.683 30.769 0.00 0.00 0.00 3.51
1485 1517 6.930667 AATTCAGTGCTTCAAAATGCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
1539 1571 2.897271 TTTTGCCATGCCTTCTAGGA 57.103 45.000 0.00 0.00 37.67 2.94
1540 1572 2.897271 TTTGCCATGCCTTCTAGGAA 57.103 45.000 0.00 0.00 37.67 3.36
1541 1573 3.386932 TTTGCCATGCCTTCTAGGAAT 57.613 42.857 0.00 0.00 37.67 3.01
1549 1581 6.069684 CATGCCTTCTAGGAATGTGATTTC 57.930 41.667 5.64 0.00 44.91 2.17
1550 1582 4.191544 TGCCTTCTAGGAATGTGATTTCG 58.808 43.478 0.00 0.00 37.67 3.46
1551 1583 3.002759 GCCTTCTAGGAATGTGATTTCGC 59.997 47.826 0.00 0.00 37.67 4.70
1552 1584 3.246226 CCTTCTAGGAATGTGATTTCGCG 59.754 47.826 0.00 0.00 37.67 5.87
1553 1585 3.793797 TCTAGGAATGTGATTTCGCGA 57.206 42.857 3.71 3.71 0.00 5.87
1554 1586 3.444916 TCTAGGAATGTGATTTCGCGAC 58.555 45.455 9.15 0.00 0.00 5.19
1555 1587 0.999406 AGGAATGTGATTTCGCGACG 59.001 50.000 9.15 0.00 0.00 5.12
1556 1588 0.996462 GGAATGTGATTTCGCGACGA 59.004 50.000 9.15 0.00 0.00 4.20
1557 1589 1.392168 GGAATGTGATTTCGCGACGAA 59.608 47.619 9.15 0.66 44.28 3.85
1558 1590 2.030457 GGAATGTGATTTCGCGACGAAT 59.970 45.455 9.15 7.10 45.28 3.34
1559 1591 3.485216 GGAATGTGATTTCGCGACGAATT 60.485 43.478 9.15 10.95 45.28 2.17
1560 1592 3.740044 ATGTGATTTCGCGACGAATTT 57.260 38.095 9.15 6.59 45.28 1.82
1561 1593 3.529634 TGTGATTTCGCGACGAATTTT 57.470 38.095 9.15 4.58 45.28 1.82
1562 1594 3.222361 TGTGATTTCGCGACGAATTTTG 58.778 40.909 9.15 0.00 45.28 2.44
1563 1595 2.588106 GTGATTTCGCGACGAATTTTGG 59.412 45.455 9.15 0.00 45.28 3.28
1564 1596 1.577578 GATTTCGCGACGAATTTTGGC 59.422 47.619 9.15 0.00 45.28 4.52
1565 1597 0.308068 TTTCGCGACGAATTTTGGCA 59.692 45.000 9.15 0.00 45.28 4.92
1566 1598 0.110419 TTCGCGACGAATTTTGGCAG 60.110 50.000 9.15 0.00 41.05 4.85
1567 1599 1.511887 CGCGACGAATTTTGGCAGG 60.512 57.895 0.00 0.00 0.00 4.85
1568 1600 1.801512 GCGACGAATTTTGGCAGGC 60.802 57.895 0.00 0.00 0.00 4.85
1569 1601 1.578926 CGACGAATTTTGGCAGGCA 59.421 52.632 0.00 0.00 0.00 4.75
1570 1602 0.729140 CGACGAATTTTGGCAGGCAC 60.729 55.000 0.00 0.00 0.00 5.01
1571 1603 0.598065 GACGAATTTTGGCAGGCACT 59.402 50.000 0.00 0.00 43.88 4.40
1572 1604 1.000274 GACGAATTTTGGCAGGCACTT 60.000 47.619 0.00 0.00 34.60 3.16
1573 1605 2.227865 GACGAATTTTGGCAGGCACTTA 59.772 45.455 0.00 0.00 34.60 2.24
1574 1606 2.228822 ACGAATTTTGGCAGGCACTTAG 59.771 45.455 0.00 0.00 34.60 2.18
1575 1607 2.487762 CGAATTTTGGCAGGCACTTAGA 59.512 45.455 0.00 0.00 34.60 2.10
1576 1608 3.057596 CGAATTTTGGCAGGCACTTAGAA 60.058 43.478 0.00 0.00 34.60 2.10
1577 1609 3.942130 ATTTTGGCAGGCACTTAGAAC 57.058 42.857 0.00 0.00 34.60 3.01
1578 1610 2.656947 TTTGGCAGGCACTTAGAACT 57.343 45.000 0.00 0.00 34.60 3.01
1579 1611 2.656947 TTGGCAGGCACTTAGAACTT 57.343 45.000 0.00 0.00 34.60 2.66
1580 1612 2.656947 TGGCAGGCACTTAGAACTTT 57.343 45.000 0.00 0.00 34.60 2.66
1581 1613 2.944129 TGGCAGGCACTTAGAACTTTT 58.056 42.857 0.00 0.00 34.60 2.27
1582 1614 2.622942 TGGCAGGCACTTAGAACTTTTG 59.377 45.455 0.00 0.00 34.60 2.44
1583 1615 2.623416 GGCAGGCACTTAGAACTTTTGT 59.377 45.455 0.00 0.00 34.60 2.83
1584 1616 3.304726 GGCAGGCACTTAGAACTTTTGTC 60.305 47.826 0.00 0.00 34.60 3.18
1585 1617 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
1586 1618 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
1587 1619 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
1588 1620 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
1589 1621 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
1590 1622 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
1591 1623 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
1592 1624 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
1593 1625 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
1594 1626 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
1595 1627 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
1596 1628 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
1597 1629 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
1598 1630 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
1599 1631 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
1600 1632 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
1601 1633 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
1656 1688 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
1657 1689 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
1658 1690 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
1659 1691 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
1660 1692 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
1676 1708 4.182744 AGCATACGAGCTCGGGAT 57.817 55.556 36.93 26.61 42.18 3.85
1677 1709 1.960612 AGCATACGAGCTCGGGATC 59.039 57.895 36.93 23.01 42.18 3.36
1678 1710 0.823769 AGCATACGAGCTCGGGATCA 60.824 55.000 36.93 18.10 42.18 2.92
1679 1711 0.032130 GCATACGAGCTCGGGATCAA 59.968 55.000 36.93 16.71 44.95 2.57
1680 1712 1.337260 GCATACGAGCTCGGGATCAAT 60.337 52.381 36.93 18.57 44.95 2.57
1681 1713 2.868044 GCATACGAGCTCGGGATCAATT 60.868 50.000 36.93 17.84 44.95 2.32
1682 1714 2.795175 TACGAGCTCGGGATCAATTC 57.205 50.000 36.93 0.00 44.95 2.17
1683 1715 0.105039 ACGAGCTCGGGATCAATTCC 59.895 55.000 36.93 0.00 44.95 3.01
1684 1716 0.390860 CGAGCTCGGGATCAATTCCT 59.609 55.000 28.40 0.00 44.75 3.36
1685 1717 1.604185 CGAGCTCGGGATCAATTCCTC 60.604 57.143 28.40 0.00 44.75 3.71
1686 1718 0.761802 AGCTCGGGATCAATTCCTCC 59.238 55.000 0.00 0.00 44.75 4.30
1687 1719 0.601311 GCTCGGGATCAATTCCTCCG 60.601 60.000 0.00 0.00 44.75 4.63
1688 1720 0.601311 CTCGGGATCAATTCCTCCGC 60.601 60.000 0.00 0.00 44.75 5.54
1689 1721 1.956170 CGGGATCAATTCCTCCGCG 60.956 63.158 0.00 0.00 44.75 6.46
1690 1722 1.146263 GGGATCAATTCCTCCGCGT 59.854 57.895 4.92 0.00 44.75 6.01
1691 1723 1.160329 GGGATCAATTCCTCCGCGTG 61.160 60.000 4.92 0.00 44.75 5.34
1692 1724 0.462047 GGATCAATTCCTCCGCGTGT 60.462 55.000 4.92 0.00 41.78 4.49
1693 1725 1.369625 GATCAATTCCTCCGCGTGTT 58.630 50.000 4.92 0.00 0.00 3.32
1694 1726 1.737793 GATCAATTCCTCCGCGTGTTT 59.262 47.619 4.92 0.00 0.00 2.83
1695 1727 1.600023 TCAATTCCTCCGCGTGTTTT 58.400 45.000 4.92 0.00 0.00 2.43
1700 1732 1.370414 CCTCCGCGTGTTTTTGCAG 60.370 57.895 4.92 0.00 0.00 4.41
1725 1757 7.815068 AGTTTTCTAACTACTGCTGTATGAGTG 59.185 37.037 3.72 0.00 42.73 3.51
1838 1907 7.041235 GCTGAGACATAGTATTTACTCCGTAGT 60.041 40.741 0.00 0.00 37.73 2.73
1839 1908 9.486497 CTGAGACATAGTATTTACTCCGTAGTA 57.514 37.037 0.00 0.00 37.73 1.82
1840 1909 9.265901 TGAGACATAGTATTTACTCCGTAGTAC 57.734 37.037 0.00 0.00 37.94 2.73
1841 1910 9.487790 GAGACATAGTATTTACTCCGTAGTACT 57.512 37.037 0.00 0.00 37.94 2.73
1876 1945 6.261158 GGAGCTGGATAGGTGACTTATTTTTC 59.739 42.308 0.00 0.00 43.67 2.29
1917 1986 6.094464 TGACCAAGTGATTGCTGAGAAATATG 59.906 38.462 0.00 0.00 0.00 1.78
1919 1988 6.127814 ACCAAGTGATTGCTGAGAAATATGTG 60.128 38.462 0.00 0.00 0.00 3.21
1943 2012 5.400066 GCATTTGTAAGGCCTTAGGAAAA 57.600 39.130 25.83 23.12 30.71 2.29
1954 2025 4.770531 GGCCTTAGGAAAATTTAGGTGTGT 59.229 41.667 0.69 0.00 0.00 3.72
1973 2044 4.091424 GTGTATGAGATGCTTGCGTTTTC 58.909 43.478 0.00 0.00 0.00 2.29
1980 2051 0.944386 TGCTTGCGTTTTCTGAGGTC 59.056 50.000 0.00 0.00 0.00 3.85
2015 2108 3.352648 GCTCAAATTAGGGGTGCTTGTA 58.647 45.455 0.00 0.00 0.00 2.41
2023 2116 3.525800 AGGGGTGCTTGTATTCAAACT 57.474 42.857 0.00 0.00 32.87 2.66
2079 2172 2.088423 AGCAGTGAGAACTACGGAGAG 58.912 52.381 0.00 0.00 0.00 3.20
2269 2362 1.938625 TGCAAAGCAAAAGCTTGGAC 58.061 45.000 8.70 1.39 34.76 4.02
2333 2426 7.094248 TGCAATATGAATGTTTCAGTAGCACTT 60.094 33.333 0.00 0.00 43.98 3.16
2334 2427 7.430502 GCAATATGAATGTTTCAGTAGCACTTC 59.569 37.037 0.00 0.00 43.98 3.01
2386 2479 6.198966 GTCTATAATTGCCGCTGGAATTTTTG 59.801 38.462 12.47 6.75 0.00 2.44
2413 2506 6.037610 CCCTTACTCAAACATCTGCAACTATC 59.962 42.308 0.00 0.00 0.00 2.08
2415 2508 7.010923 CCTTACTCAAACATCTGCAACTATCTC 59.989 40.741 0.00 0.00 0.00 2.75
2416 2509 6.047511 ACTCAAACATCTGCAACTATCTCT 57.952 37.500 0.00 0.00 0.00 3.10
2549 2642 7.552050 TTTCAAACATCCCACCAATCTAAAT 57.448 32.000 0.00 0.00 0.00 1.40
3023 3122 0.179059 TTTGCTCAGCTCAACACCGA 60.179 50.000 0.00 0.00 0.00 4.69
3061 3160 9.533253 GTGTTATTCCATTCATTTTTATCCCTG 57.467 33.333 0.00 0.00 0.00 4.45
3068 3169 7.454380 TCCATTCATTTTTATCCCTGAACAGTT 59.546 33.333 1.18 0.00 31.00 3.16
3074 3175 7.519032 TTTTTATCCCTGAACAGTTGGTTAG 57.481 36.000 0.00 0.00 40.63 2.34
3081 3182 3.550820 TGAACAGTTGGTTAGTGCACAT 58.449 40.909 21.04 6.83 40.63 3.21
3090 3191 4.393834 TGGTTAGTGCACATTTAGAGCAA 58.606 39.130 21.04 0.00 45.39 3.91
3134 3235 4.397420 TCTTCAGCCTTTGATGCTACAAA 58.603 39.130 8.15 8.15 36.81 2.83
3184 3285 1.184970 TCCGAGCACATCACCACTCA 61.185 55.000 0.00 0.00 0.00 3.41
3185 3286 0.320683 CCGAGCACATCACCACTCAA 60.321 55.000 0.00 0.00 0.00 3.02
3186 3287 1.511850 CGAGCACATCACCACTCAAA 58.488 50.000 0.00 0.00 0.00 2.69
3187 3288 1.872952 CGAGCACATCACCACTCAAAA 59.127 47.619 0.00 0.00 0.00 2.44
3188 3289 2.349817 CGAGCACATCACCACTCAAAAC 60.350 50.000 0.00 0.00 0.00 2.43
3189 3290 2.880890 GAGCACATCACCACTCAAAACT 59.119 45.455 0.00 0.00 0.00 2.66
3190 3291 2.880890 AGCACATCACCACTCAAAACTC 59.119 45.455 0.00 0.00 0.00 3.01
3239 3340 1.251251 GCAGTGGTTCTTGCCTTGAT 58.749 50.000 0.00 0.00 0.00 2.57
3240 3341 1.068055 GCAGTGGTTCTTGCCTTGATG 60.068 52.381 0.00 0.00 0.00 3.07
3241 3342 1.068055 CAGTGGTTCTTGCCTTGATGC 60.068 52.381 0.00 0.00 0.00 3.91
3242 3343 0.961019 GTGGTTCTTGCCTTGATGCA 59.039 50.000 0.00 0.00 40.07 3.96
3243 3344 1.068055 GTGGTTCTTGCCTTGATGCAG 60.068 52.381 0.00 0.00 43.21 4.41
3244 3345 0.108945 GGTTCTTGCCTTGATGCAGC 60.109 55.000 0.00 0.00 43.21 5.25
3245 3346 0.599558 GTTCTTGCCTTGATGCAGCA 59.400 50.000 0.00 0.00 43.21 4.41
3246 3347 0.885879 TTCTTGCCTTGATGCAGCAG 59.114 50.000 4.20 0.00 43.21 4.24
3247 3348 0.251033 TCTTGCCTTGATGCAGCAGT 60.251 50.000 4.20 0.00 43.21 4.40
3248 3349 1.003464 TCTTGCCTTGATGCAGCAGTA 59.997 47.619 4.20 0.00 43.21 2.74
3249 3350 1.400846 CTTGCCTTGATGCAGCAGTAG 59.599 52.381 4.20 0.00 43.21 2.57
3250 3351 1.028330 TGCCTTGATGCAGCAGTAGC 61.028 55.000 4.20 10.26 36.04 3.58
3264 3365 4.585619 GCAGTAGCTTAACTTTCTTCCG 57.414 45.455 0.00 0.00 37.91 4.30
3265 3366 4.243270 GCAGTAGCTTAACTTTCTTCCGA 58.757 43.478 0.00 0.00 37.91 4.55
3266 3367 4.870991 GCAGTAGCTTAACTTTCTTCCGAT 59.129 41.667 0.00 0.00 37.91 4.18
3267 3368 5.005875 GCAGTAGCTTAACTTTCTTCCGATC 59.994 44.000 0.00 0.00 37.91 3.69
3268 3369 6.334202 CAGTAGCTTAACTTTCTTCCGATCT 58.666 40.000 0.00 0.00 0.00 2.75
3269 3370 6.254589 CAGTAGCTTAACTTTCTTCCGATCTG 59.745 42.308 0.00 0.00 0.00 2.90
3270 3371 3.935828 AGCTTAACTTTCTTCCGATCTGC 59.064 43.478 0.00 0.00 0.00 4.26
3271 3372 3.684788 GCTTAACTTTCTTCCGATCTGCA 59.315 43.478 0.00 0.00 0.00 4.41
3272 3373 4.154195 GCTTAACTTTCTTCCGATCTGCAA 59.846 41.667 0.00 0.00 0.00 4.08
3273 3374 5.163713 GCTTAACTTTCTTCCGATCTGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
3274 3375 4.691860 AACTTTCTTCCGATCTGCAATG 57.308 40.909 0.00 0.00 0.00 2.82
3275 3376 3.679389 ACTTTCTTCCGATCTGCAATGT 58.321 40.909 0.00 0.00 0.00 2.71
3276 3377 4.832248 ACTTTCTTCCGATCTGCAATGTA 58.168 39.130 0.00 0.00 0.00 2.29
3277 3378 5.245531 ACTTTCTTCCGATCTGCAATGTAA 58.754 37.500 0.00 0.00 0.00 2.41
3278 3379 5.352569 ACTTTCTTCCGATCTGCAATGTAAG 59.647 40.000 0.00 0.00 0.00 2.34
3279 3380 3.797039 TCTTCCGATCTGCAATGTAAGG 58.203 45.455 0.00 0.00 0.00 2.69
3297 3398 1.747355 AGGCTGTATACGTACGTTGCT 59.253 47.619 27.92 13.99 33.36 3.91
3298 3399 1.850441 GGCTGTATACGTACGTTGCTG 59.150 52.381 27.92 19.58 33.36 4.41
3299 3400 1.254570 GCTGTATACGTACGTTGCTGC 59.745 52.381 27.92 24.11 33.36 5.25
3300 3401 1.850441 CTGTATACGTACGTTGCTGCC 59.150 52.381 27.92 9.40 33.36 4.85
3301 3402 1.201880 TGTATACGTACGTTGCTGCCA 59.798 47.619 27.92 6.75 33.36 4.92
3302 3403 2.261345 GTATACGTACGTTGCTGCCAA 58.739 47.619 27.92 5.90 0.00 4.52
3303 3404 2.018542 ATACGTACGTTGCTGCCAAT 57.981 45.000 27.92 8.28 32.75 3.16
3304 3405 1.352114 TACGTACGTTGCTGCCAATC 58.648 50.000 27.92 0.00 32.75 2.67
3305 3406 0.320421 ACGTACGTTGCTGCCAATCT 60.320 50.000 16.72 0.00 32.75 2.40
3306 3407 1.067425 ACGTACGTTGCTGCCAATCTA 60.067 47.619 16.72 0.00 32.75 1.98
3344 3447 9.674068 GGGTTCAAAAAGAGAGAGTTTATATCT 57.326 33.333 0.00 0.00 30.14 1.98
3381 3484 9.941664 ATACATTTCGATGAGATGAAAATTGAC 57.058 29.630 4.55 0.00 37.60 3.18
3382 3485 7.253422 ACATTTCGATGAGATGAAAATTGACC 58.747 34.615 4.55 0.00 37.60 4.02
3383 3486 6.816134 TTTCGATGAGATGAAAATTGACCA 57.184 33.333 0.00 0.00 31.55 4.02
3384 3487 6.816134 TTCGATGAGATGAAAATTGACCAA 57.184 33.333 0.00 0.00 0.00 3.67
3385 3488 6.426980 TCGATGAGATGAAAATTGACCAAG 57.573 37.500 0.00 0.00 0.00 3.61
3386 3489 5.939883 TCGATGAGATGAAAATTGACCAAGT 59.060 36.000 0.00 0.00 0.00 3.16
3387 3490 6.430925 TCGATGAGATGAAAATTGACCAAGTT 59.569 34.615 0.00 0.00 0.00 2.66
3388 3491 7.606073 TCGATGAGATGAAAATTGACCAAGTTA 59.394 33.333 0.00 0.00 0.00 2.24
3389 3492 7.693951 CGATGAGATGAAAATTGACCAAGTTAC 59.306 37.037 0.00 0.00 0.00 2.50
3390 3493 7.815840 TGAGATGAAAATTGACCAAGTTACA 57.184 32.000 0.00 0.00 0.00 2.41
3391 3494 8.231692 TGAGATGAAAATTGACCAAGTTACAA 57.768 30.769 0.00 0.00 0.00 2.41
3392 3495 8.690884 TGAGATGAAAATTGACCAAGTTACAAA 58.309 29.630 0.00 0.00 0.00 2.83
3393 3496 8.871686 AGATGAAAATTGACCAAGTTACAAAC 57.128 30.769 0.00 0.00 0.00 2.93
3394 3497 8.695456 AGATGAAAATTGACCAAGTTACAAACT 58.305 29.630 0.00 0.00 45.46 2.66
3411 3514 9.376075 GTTACAAACTTATTTAGTACTCCCTCC 57.624 37.037 0.00 0.00 35.54 4.30
3412 3515 6.637657 ACAAACTTATTTAGTACTCCCTCCG 58.362 40.000 0.00 0.00 35.54 4.63
3413 3516 6.212187 ACAAACTTATTTAGTACTCCCTCCGT 59.788 38.462 0.00 0.00 35.54 4.69
3414 3517 6.864151 AACTTATTTAGTACTCCCTCCGTT 57.136 37.500 0.00 0.00 35.54 4.44
3415 3518 6.462552 ACTTATTTAGTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 34.56 3.95
3416 3519 5.362143 ACTTATTTAGTACTCCCTCCGTTCC 59.638 44.000 0.00 0.00 34.56 3.62
3417 3520 1.755179 TTAGTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
3418 3521 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
3419 3522 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3420 3523 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
3421 3524 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
3422 3525 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3423 3526 2.181975 ACTCCCTCCGTTCCGAAATAA 58.818 47.619 0.00 0.00 0.00 1.40
3424 3527 2.770232 ACTCCCTCCGTTCCGAAATAAT 59.230 45.455 0.00 0.00 0.00 1.28
3425 3528 3.199289 ACTCCCTCCGTTCCGAAATAATT 59.801 43.478 0.00 0.00 0.00 1.40
3426 3529 3.537580 TCCCTCCGTTCCGAAATAATTG 58.462 45.455 0.00 0.00 0.00 2.32
3427 3530 3.054948 TCCCTCCGTTCCGAAATAATTGT 60.055 43.478 0.00 0.00 0.00 2.71
3428 3531 3.311596 CCCTCCGTTCCGAAATAATTGTC 59.688 47.826 0.00 0.00 0.00 3.18
3429 3532 3.000925 CCTCCGTTCCGAAATAATTGTCG 59.999 47.826 0.00 0.00 37.01 4.35
3430 3533 3.587923 TCCGTTCCGAAATAATTGTCGT 58.412 40.909 7.09 0.00 35.48 4.34
3431 3534 3.995705 TCCGTTCCGAAATAATTGTCGTT 59.004 39.130 7.09 0.00 35.48 3.85
3432 3535 4.085884 CCGTTCCGAAATAATTGTCGTTG 58.914 43.478 7.09 0.00 35.48 4.10
3433 3536 4.085884 CGTTCCGAAATAATTGTCGTTGG 58.914 43.478 7.09 0.00 35.48 3.77
3434 3537 4.408694 GTTCCGAAATAATTGTCGTTGGG 58.591 43.478 7.09 0.00 35.48 4.12
3435 3538 3.940319 TCCGAAATAATTGTCGTTGGGA 58.060 40.909 7.09 0.00 35.48 4.37
3436 3539 3.936453 TCCGAAATAATTGTCGTTGGGAG 59.064 43.478 7.09 0.00 35.48 4.30
3437 3540 3.687698 CCGAAATAATTGTCGTTGGGAGT 59.312 43.478 7.09 0.00 35.48 3.85
3438 3541 4.155280 CCGAAATAATTGTCGTTGGGAGTT 59.845 41.667 7.09 0.00 35.48 3.01
3439 3542 5.335348 CCGAAATAATTGTCGTTGGGAGTTT 60.335 40.000 7.09 0.00 35.48 2.66
3440 3543 5.793457 CGAAATAATTGTCGTTGGGAGTTTC 59.207 40.000 0.00 0.00 32.61 2.78
3441 3544 6.348213 CGAAATAATTGTCGTTGGGAGTTTCT 60.348 38.462 0.00 0.00 32.61 2.52
3442 3545 7.148540 CGAAATAATTGTCGTTGGGAGTTTCTA 60.149 37.037 0.00 0.00 32.61 2.10
3443 3546 7.611213 AATAATTGTCGTTGGGAGTTTCTAG 57.389 36.000 0.00 0.00 0.00 2.43
3444 3547 4.618920 ATTGTCGTTGGGAGTTTCTAGT 57.381 40.909 0.00 0.00 0.00 2.57
3445 3548 3.380479 TGTCGTTGGGAGTTTCTAGTG 57.620 47.619 0.00 0.00 0.00 2.74
3446 3549 2.067013 GTCGTTGGGAGTTTCTAGTGC 58.933 52.381 0.00 0.00 0.00 4.40
3447 3550 1.689813 TCGTTGGGAGTTTCTAGTGCA 59.310 47.619 0.00 0.00 0.00 4.57
3448 3551 2.103432 TCGTTGGGAGTTTCTAGTGCAA 59.897 45.455 0.00 0.00 0.00 4.08
3449 3552 3.074412 CGTTGGGAGTTTCTAGTGCAAT 58.926 45.455 0.00 0.00 0.00 3.56
3450 3553 3.502211 CGTTGGGAGTTTCTAGTGCAATT 59.498 43.478 0.00 0.00 0.00 2.32
3451 3554 4.023193 CGTTGGGAGTTTCTAGTGCAATTT 60.023 41.667 0.00 0.00 0.00 1.82
3452 3555 5.461526 GTTGGGAGTTTCTAGTGCAATTTC 58.538 41.667 0.00 0.00 0.00 2.17
3453 3556 4.079253 TGGGAGTTTCTAGTGCAATTTCC 58.921 43.478 0.00 0.00 0.00 3.13
3454 3557 3.127030 GGGAGTTTCTAGTGCAATTTCCG 59.873 47.826 0.00 0.00 0.00 4.30
3455 3558 3.426292 GGAGTTTCTAGTGCAATTTCCGC 60.426 47.826 0.00 0.00 0.00 5.54
3456 3559 2.488153 AGTTTCTAGTGCAATTTCCGCC 59.512 45.455 0.00 0.00 0.00 6.13
3457 3560 1.083489 TTCTAGTGCAATTTCCGCCG 58.917 50.000 0.00 0.00 0.00 6.46
3458 3561 1.062525 CTAGTGCAATTTCCGCCGC 59.937 57.895 0.00 0.00 0.00 6.53
3459 3562 2.631696 CTAGTGCAATTTCCGCCGCG 62.632 60.000 5.59 5.59 0.00 6.46
3460 3563 4.398598 GTGCAATTTCCGCCGCGT 62.399 61.111 12.58 0.00 0.00 6.01
3461 3564 3.665226 TGCAATTTCCGCCGCGTT 61.665 55.556 12.58 0.00 0.00 4.84
3462 3565 2.325835 TGCAATTTCCGCCGCGTTA 61.326 52.632 12.58 0.00 0.00 3.18
3463 3566 1.866059 GCAATTTCCGCCGCGTTAC 60.866 57.895 12.58 0.00 0.00 2.50
3464 3567 1.579122 CAATTTCCGCCGCGTTACG 60.579 57.895 12.58 5.85 43.15 3.18
3485 3588 4.461992 GACATTTCTGTCGTTTCCGAAA 57.538 40.909 0.00 0.00 46.26 3.46
3486 3589 4.205323 ACATTTCTGTCGTTTCCGAAAC 57.795 40.909 13.16 13.16 46.26 2.78
3487 3590 3.875134 ACATTTCTGTCGTTTCCGAAACT 59.125 39.130 19.31 0.00 46.26 2.66
3488 3591 5.051816 ACATTTCTGTCGTTTCCGAAACTA 58.948 37.500 19.31 8.09 46.26 2.24
3489 3592 5.050567 ACATTTCTGTCGTTTCCGAAACTAC 60.051 40.000 19.31 18.38 46.26 2.73
3490 3593 3.017265 TCTGTCGTTTCCGAAACTACC 57.983 47.619 20.18 10.27 46.26 3.18
3491 3594 2.064014 CTGTCGTTTCCGAAACTACCC 58.936 52.381 20.18 8.39 46.26 3.69
3492 3595 1.688197 TGTCGTTTCCGAAACTACCCT 59.312 47.619 20.18 0.00 46.26 4.34
3493 3596 2.288395 TGTCGTTTCCGAAACTACCCTC 60.288 50.000 20.18 7.60 46.26 4.30
3494 3597 1.273327 TCGTTTCCGAAACTACCCTCC 59.727 52.381 19.31 0.00 40.86 4.30
3495 3598 1.673923 CGTTTCCGAAACTACCCTCCC 60.674 57.143 19.31 0.00 39.23 4.30
3496 3599 1.348696 GTTTCCGAAACTACCCTCCCA 59.651 52.381 15.47 0.00 38.35 4.37
3497 3600 0.978907 TTCCGAAACTACCCTCCCAC 59.021 55.000 0.00 0.00 0.00 4.61
3498 3601 0.115745 TCCGAAACTACCCTCCCACT 59.884 55.000 0.00 0.00 0.00 4.00
3499 3602 0.535797 CCGAAACTACCCTCCCACTC 59.464 60.000 0.00 0.00 0.00 3.51
3500 3603 1.558233 CGAAACTACCCTCCCACTCT 58.442 55.000 0.00 0.00 0.00 3.24
3501 3604 1.477295 CGAAACTACCCTCCCACTCTC 59.523 57.143 0.00 0.00 0.00 3.20
3502 3605 2.822697 GAAACTACCCTCCCACTCTCT 58.177 52.381 0.00 0.00 0.00 3.10
3503 3606 3.174779 GAAACTACCCTCCCACTCTCTT 58.825 50.000 0.00 0.00 0.00 2.85
3504 3607 2.239681 ACTACCCTCCCACTCTCTTG 57.760 55.000 0.00 0.00 0.00 3.02
3505 3608 0.827368 CTACCCTCCCACTCTCTTGC 59.173 60.000 0.00 0.00 0.00 4.01
3506 3609 0.413832 TACCCTCCCACTCTCTTGCT 59.586 55.000 0.00 0.00 0.00 3.91
3507 3610 0.907230 ACCCTCCCACTCTCTTGCTC 60.907 60.000 0.00 0.00 0.00 4.26
3508 3611 1.515020 CCTCCCACTCTCTTGCTCG 59.485 63.158 0.00 0.00 0.00 5.03
3509 3612 1.153667 CTCCCACTCTCTTGCTCGC 60.154 63.158 0.00 0.00 0.00 5.03
3510 3613 1.603236 CTCCCACTCTCTTGCTCGCT 61.603 60.000 0.00 0.00 0.00 4.93
3511 3614 1.153667 CCCACTCTCTTGCTCGCTC 60.154 63.158 0.00 0.00 0.00 5.03
3512 3615 1.588597 CCACTCTCTTGCTCGCTCA 59.411 57.895 0.00 0.00 0.00 4.26
3513 3616 0.458197 CCACTCTCTTGCTCGCTCAG 60.458 60.000 0.00 0.00 0.00 3.35
3521 3624 4.447989 GCTCGCTCAGCTCAGCCA 62.448 66.667 3.17 0.00 45.83 4.75
3522 3625 2.508887 CTCGCTCAGCTCAGCCAC 60.509 66.667 3.17 0.00 35.84 5.01
3523 3626 2.993840 TCGCTCAGCTCAGCCACT 60.994 61.111 3.17 0.00 35.84 4.00
3524 3627 2.508887 CGCTCAGCTCAGCCACTC 60.509 66.667 3.17 0.00 35.84 3.51
3525 3628 2.508887 GCTCAGCTCAGCCACTCG 60.509 66.667 0.00 0.00 32.76 4.18
3526 3629 2.508887 CTCAGCTCAGCCACTCGC 60.509 66.667 0.00 0.00 37.98 5.03
3543 3646 4.821589 CTCGCTGGCTCCCGAACC 62.822 72.222 0.00 0.00 32.56 3.62
3547 3650 2.365105 CTGGCTCCCGAACCCCTA 60.365 66.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.514012 AACATGGGAAAGGAAAAAGGAAAT 57.486 33.333 0.00 0.00 0.00 2.17
80 81 5.966853 AACATGGGAAAGGAAAAAGGAAA 57.033 34.783 0.00 0.00 0.00 3.13
81 82 5.966853 AAACATGGGAAAGGAAAAAGGAA 57.033 34.783 0.00 0.00 0.00 3.36
82 83 5.966853 AAAACATGGGAAAGGAAAAAGGA 57.033 34.783 0.00 0.00 0.00 3.36
83 84 6.826668 AGTAAAACATGGGAAAGGAAAAAGG 58.173 36.000 0.00 0.00 0.00 3.11
84 85 8.731275 AAAGTAAAACATGGGAAAGGAAAAAG 57.269 30.769 0.00 0.00 0.00 2.27
85 86 9.521841 AAAAAGTAAAACATGGGAAAGGAAAAA 57.478 25.926 0.00 0.00 0.00 1.94
153 154 8.664798 GCAAGTTGAAAAACAAAAAGGAATAGT 58.335 29.630 7.16 0.00 40.36 2.12
158 159 5.230942 TCGCAAGTTGAAAAACAAAAAGGA 58.769 33.333 7.16 0.00 40.36 3.36
175 176 3.872354 TCGTTTGAAAGATGTTCGCAAG 58.128 40.909 0.00 0.00 0.00 4.01
183 184 7.684062 AAAATGTTCACTCGTTTGAAAGATG 57.316 32.000 3.52 0.00 37.24 2.90
255 256 9.476761 GTTCAAGAATTTGTGAAAAATGTTCAC 57.523 29.630 9.28 9.28 46.57 3.18
339 340 2.028130 TGTGTTCCCGAGTGCAATTTT 58.972 42.857 0.00 0.00 0.00 1.82
340 341 1.686355 TGTGTTCCCGAGTGCAATTT 58.314 45.000 0.00 0.00 0.00 1.82
341 342 1.909700 ATGTGTTCCCGAGTGCAATT 58.090 45.000 0.00 0.00 0.00 2.32
342 343 1.909700 AATGTGTTCCCGAGTGCAAT 58.090 45.000 0.00 0.00 0.00 3.56
346 348 3.980646 TCAAAAATGTGTTCCCGAGTG 57.019 42.857 0.00 0.00 0.00 3.51
352 354 2.362717 TCCCGGTTCAAAAATGTGTTCC 59.637 45.455 0.00 0.00 0.00 3.62
398 400 6.925610 AAAAAGCTCAGGAATTCCAAAAAC 57.074 33.333 26.22 11.23 38.89 2.43
575 604 6.584942 CCTCACAGATTCAACAAATGTTCATG 59.415 38.462 0.00 0.00 35.83 3.07
607 636 9.881529 CATGAATCGAAAAATGTTTGGAAAATT 57.118 25.926 0.00 0.00 35.43 1.82
612 641 8.830201 ATTTCATGAATCGAAAAATGTTTGGA 57.170 26.923 9.40 0.00 36.06 3.53
661 690 1.069049 CAGGAAGCCCCTTTGTTGTTG 59.931 52.381 0.00 0.00 44.85 3.33
664 693 1.667722 GCAGGAAGCCCCTTTGTTG 59.332 57.895 0.00 0.00 44.85 3.33
698 727 0.688487 TTTGGAGGTGAACTACGGGG 59.312 55.000 0.00 0.00 30.06 5.73
699 728 2.148768 GTTTTGGAGGTGAACTACGGG 58.851 52.381 0.00 0.00 30.06 5.28
702 731 2.552743 GCTGGTTTTGGAGGTGAACTAC 59.447 50.000 0.00 0.00 0.00 2.73
704 733 1.215423 AGCTGGTTTTGGAGGTGAACT 59.785 47.619 0.00 0.00 0.00 3.01
705 734 1.692411 AGCTGGTTTTGGAGGTGAAC 58.308 50.000 0.00 0.00 0.00 3.18
706 735 2.452600 AAGCTGGTTTTGGAGGTGAA 57.547 45.000 0.00 0.00 0.00 3.18
707 736 2.441750 AGTAAGCTGGTTTTGGAGGTGA 59.558 45.455 0.00 0.00 0.00 4.02
708 737 2.814336 GAGTAAGCTGGTTTTGGAGGTG 59.186 50.000 0.00 0.00 0.00 4.00
709 738 2.224793 GGAGTAAGCTGGTTTTGGAGGT 60.225 50.000 0.00 0.00 0.00 3.85
710 739 2.040412 AGGAGTAAGCTGGTTTTGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
711 740 3.425162 AGGAGTAAGCTGGTTTTGGAG 57.575 47.619 0.00 0.00 0.00 3.86
712 741 5.514500 AATAGGAGTAAGCTGGTTTTGGA 57.486 39.130 0.00 0.00 0.00 3.53
713 742 7.393515 AGTTAAATAGGAGTAAGCTGGTTTTGG 59.606 37.037 0.00 0.00 0.00 3.28
714 743 8.237267 CAGTTAAATAGGAGTAAGCTGGTTTTG 58.763 37.037 0.00 0.00 0.00 2.44
715 744 7.393515 CCAGTTAAATAGGAGTAAGCTGGTTTT 59.606 37.037 0.00 0.00 36.98 2.43
716 745 6.884836 CCAGTTAAATAGGAGTAAGCTGGTTT 59.115 38.462 0.00 0.00 36.98 3.27
717 746 6.415573 CCAGTTAAATAGGAGTAAGCTGGTT 58.584 40.000 0.00 0.00 36.98 3.67
718 747 5.104485 CCCAGTTAAATAGGAGTAAGCTGGT 60.104 44.000 0.00 0.00 39.27 4.00
719 748 5.368989 CCCAGTTAAATAGGAGTAAGCTGG 58.631 45.833 0.00 0.00 40.25 4.85
720 749 4.816925 GCCCAGTTAAATAGGAGTAAGCTG 59.183 45.833 0.00 0.00 0.00 4.24
721 750 4.722279 AGCCCAGTTAAATAGGAGTAAGCT 59.278 41.667 0.00 0.00 0.00 3.74
722 751 5.037383 AGCCCAGTTAAATAGGAGTAAGC 57.963 43.478 0.00 0.00 0.00 3.09
723 752 6.183360 GCAAAGCCCAGTTAAATAGGAGTAAG 60.183 42.308 0.00 0.00 0.00 2.34
724 753 5.650703 GCAAAGCCCAGTTAAATAGGAGTAA 59.349 40.000 0.00 0.00 0.00 2.24
725 754 5.190677 GCAAAGCCCAGTTAAATAGGAGTA 58.809 41.667 0.00 0.00 0.00 2.59
726 755 4.017126 GCAAAGCCCAGTTAAATAGGAGT 58.983 43.478 0.00 0.00 0.00 3.85
727 756 3.381590 GGCAAAGCCCAGTTAAATAGGAG 59.618 47.826 0.00 0.00 44.06 3.69
728 757 3.361786 GGCAAAGCCCAGTTAAATAGGA 58.638 45.455 0.00 0.00 44.06 2.94
729 758 3.801114 GGCAAAGCCCAGTTAAATAGG 57.199 47.619 0.00 0.00 44.06 2.57
873 902 0.264955 AAGGGGGAGAGATCGGCTTA 59.735 55.000 0.00 0.00 0.00 3.09
887 916 3.474570 CGCAGGGGAGAGAAGGGG 61.475 72.222 0.00 0.00 0.00 4.79
888 917 4.168291 GCGCAGGGGAGAGAAGGG 62.168 72.222 0.30 0.00 0.00 3.95
889 918 3.080121 AGCGCAGGGGAGAGAAGG 61.080 66.667 11.47 0.00 0.00 3.46
890 919 2.186384 CAGCGCAGGGGAGAGAAG 59.814 66.667 11.47 0.00 0.00 2.85
891 920 4.087892 GCAGCGCAGGGGAGAGAA 62.088 66.667 11.47 0.00 0.00 2.87
893 922 4.172512 ATGCAGCGCAGGGGAGAG 62.173 66.667 11.47 0.00 43.65 3.20
917 948 2.039298 TGGTGGTCTGGTTGGGGA 60.039 61.111 0.00 0.00 0.00 4.81
1205 1237 2.798148 GAAGCGGAGAGGGGCGAAAA 62.798 60.000 0.00 0.00 0.00 2.29
1222 1254 7.287696 GGCATATAGGGAAAGAAGAAAATGGAA 59.712 37.037 0.00 0.00 0.00 3.53
1288 1320 5.106712 CGGGATCAAAAGATGACTTTCGAAA 60.107 40.000 10.71 10.71 44.32 3.46
1289 1321 4.391830 CGGGATCAAAAGATGACTTTCGAA 59.608 41.667 0.00 0.00 44.32 3.71
1290 1322 3.932710 CGGGATCAAAAGATGACTTTCGA 59.067 43.478 0.00 0.00 44.32 3.71
1291 1323 3.932710 TCGGGATCAAAAGATGACTTTCG 59.067 43.478 0.00 0.00 44.32 3.46
1292 1324 4.201861 GCTCGGGATCAAAAGATGACTTTC 60.202 45.833 0.00 0.00 44.32 2.62
1293 1325 3.691609 GCTCGGGATCAAAAGATGACTTT 59.308 43.478 0.00 0.00 46.64 2.66
1294 1326 3.054802 AGCTCGGGATCAAAAGATGACTT 60.055 43.478 0.00 0.00 41.93 3.01
1295 1327 2.503356 AGCTCGGGATCAAAAGATGACT 59.497 45.455 0.00 0.00 41.93 3.41
1296 1328 2.869192 GAGCTCGGGATCAAAAGATGAC 59.131 50.000 0.00 0.00 41.93 3.06
1297 1329 2.501316 TGAGCTCGGGATCAAAAGATGA 59.499 45.455 0.00 0.00 43.67 2.92
1298 1330 2.910199 TGAGCTCGGGATCAAAAGATG 58.090 47.619 0.00 0.00 34.74 2.90
1299 1331 3.853355 ATGAGCTCGGGATCAAAAGAT 57.147 42.857 7.61 0.00 41.37 2.40
1300 1332 4.635223 CATATGAGCTCGGGATCAAAAGA 58.365 43.478 7.61 0.00 41.37 2.52
1301 1333 3.188048 GCATATGAGCTCGGGATCAAAAG 59.812 47.826 7.61 0.72 41.37 2.27
1302 1334 3.141398 GCATATGAGCTCGGGATCAAAA 58.859 45.455 7.61 0.00 41.37 2.44
1303 1335 2.369860 AGCATATGAGCTCGGGATCAAA 59.630 45.455 7.61 0.00 42.18 2.69
1304 1336 1.973515 AGCATATGAGCTCGGGATCAA 59.026 47.619 7.61 0.00 42.18 2.57
1305 1337 1.637338 AGCATATGAGCTCGGGATCA 58.363 50.000 5.33 5.33 42.18 2.92
1323 1355 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
1324 1356 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
1325 1357 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
1326 1358 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
1327 1359 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
1373 1405 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
1374 1406 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
1375 1407 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
1376 1408 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
1377 1409 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
1378 1410 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
1379 1411 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
1380 1412 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
1381 1413 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
1382 1414 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
1383 1415 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
1384 1416 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
1385 1417 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
1386 1418 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
1387 1419 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
1388 1420 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
1389 1421 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
1390 1422 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
1391 1423 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
1392 1424 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
1393 1425 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
1394 1426 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
1395 1427 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
1396 1428 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
1397 1429 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
1398 1430 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
1399 1431 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
1400 1432 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
1401 1433 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
1402 1434 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
1403 1435 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
1404 1436 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
1405 1437 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
1406 1438 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
1407 1439 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
1408 1440 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
1409 1441 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
1410 1442 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
1411 1443 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
1412 1444 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
1413 1445 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
1414 1446 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
1415 1447 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
1416 1448 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
1417 1449 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
1418 1450 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
1419 1451 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
1420 1452 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
1421 1453 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
1422 1454 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
1423 1455 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
1424 1456 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
1425 1457 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
1426 1458 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
1427 1459 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
1428 1460 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
1429 1461 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
1430 1462 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
1431 1463 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
1432 1464 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
1433 1465 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
1434 1466 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
1435 1467 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
1436 1468 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
1455 1487 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
1456 1488 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
1457 1489 6.316890 AGCATTTTGAAGCACTGAATTTGTTT 59.683 30.769 0.00 0.00 0.00 2.83
1458 1490 5.818857 AGCATTTTGAAGCACTGAATTTGTT 59.181 32.000 0.00 0.00 0.00 2.83
1459 1491 5.362263 AGCATTTTGAAGCACTGAATTTGT 58.638 33.333 0.00 0.00 0.00 2.83
1460 1492 5.917541 AGCATTTTGAAGCACTGAATTTG 57.082 34.783 0.00 0.00 0.00 2.32
1461 1493 6.930667 AAAGCATTTTGAAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
1519 1551 3.168035 TCCTAGAAGGCATGGCAAAAA 57.832 42.857 22.64 3.19 34.61 1.94
1520 1552 2.897271 TCCTAGAAGGCATGGCAAAA 57.103 45.000 22.64 2.81 34.61 2.44
1521 1553 2.897271 TTCCTAGAAGGCATGGCAAA 57.103 45.000 22.64 2.44 34.61 3.68
1522 1554 2.025037 ACATTCCTAGAAGGCATGGCAA 60.025 45.455 22.64 5.18 42.29 4.52
1523 1555 1.565759 ACATTCCTAGAAGGCATGGCA 59.434 47.619 22.64 0.00 42.29 4.92
1524 1556 1.952296 CACATTCCTAGAAGGCATGGC 59.048 52.381 12.14 12.14 42.29 4.40
1525 1557 3.565764 TCACATTCCTAGAAGGCATGG 57.434 47.619 9.83 0.81 42.29 3.66
1526 1558 5.277683 CGAAATCACATTCCTAGAAGGCATG 60.278 44.000 4.33 4.33 43.38 4.06
1527 1559 4.818546 CGAAATCACATTCCTAGAAGGCAT 59.181 41.667 0.00 0.00 34.61 4.40
1528 1560 4.191544 CGAAATCACATTCCTAGAAGGCA 58.808 43.478 0.00 0.00 34.61 4.75
1529 1561 3.002759 GCGAAATCACATTCCTAGAAGGC 59.997 47.826 0.00 0.00 34.61 4.35
1530 1562 3.246226 CGCGAAATCACATTCCTAGAAGG 59.754 47.826 0.00 0.00 36.46 3.46
1531 1563 4.026475 GTCGCGAAATCACATTCCTAGAAG 60.026 45.833 12.06 0.00 0.00 2.85
1532 1564 3.863424 GTCGCGAAATCACATTCCTAGAA 59.137 43.478 12.06 0.00 0.00 2.10
1533 1565 3.444916 GTCGCGAAATCACATTCCTAGA 58.555 45.455 12.06 0.00 0.00 2.43
1534 1566 2.216488 CGTCGCGAAATCACATTCCTAG 59.784 50.000 12.06 0.00 0.00 3.02
1535 1567 2.159352 TCGTCGCGAAATCACATTCCTA 60.159 45.455 12.06 0.00 31.06 2.94
1536 1568 0.999406 CGTCGCGAAATCACATTCCT 59.001 50.000 12.06 0.00 0.00 3.36
1537 1569 0.996462 TCGTCGCGAAATCACATTCC 59.004 50.000 12.06 0.00 31.06 3.01
1538 1570 2.780361 TTCGTCGCGAAATCACATTC 57.220 45.000 12.06 0.00 43.00 2.67
1548 1580 1.495509 CTGCCAAAATTCGTCGCGA 59.504 52.632 3.71 3.71 0.00 5.87
1549 1581 1.511887 CCTGCCAAAATTCGTCGCG 60.512 57.895 0.00 0.00 0.00 5.87
1550 1582 1.801512 GCCTGCCAAAATTCGTCGC 60.802 57.895 0.00 0.00 0.00 5.19
1551 1583 0.729140 GTGCCTGCCAAAATTCGTCG 60.729 55.000 0.00 0.00 0.00 5.12
1552 1584 0.598065 AGTGCCTGCCAAAATTCGTC 59.402 50.000 0.00 0.00 0.00 4.20
1553 1585 1.039856 AAGTGCCTGCCAAAATTCGT 58.960 45.000 0.00 0.00 0.00 3.85
1554 1586 2.487762 TCTAAGTGCCTGCCAAAATTCG 59.512 45.455 0.00 0.00 0.00 3.34
1555 1587 4.021981 AGTTCTAAGTGCCTGCCAAAATTC 60.022 41.667 0.00 0.00 0.00 2.17
1556 1588 3.897505 AGTTCTAAGTGCCTGCCAAAATT 59.102 39.130 0.00 0.00 0.00 1.82
1557 1589 3.500343 AGTTCTAAGTGCCTGCCAAAAT 58.500 40.909 0.00 0.00 0.00 1.82
1558 1590 2.944129 AGTTCTAAGTGCCTGCCAAAA 58.056 42.857 0.00 0.00 0.00 2.44
1559 1591 2.656947 AGTTCTAAGTGCCTGCCAAA 57.343 45.000 0.00 0.00 0.00 3.28
1560 1592 2.656947 AAGTTCTAAGTGCCTGCCAA 57.343 45.000 0.00 0.00 0.00 4.52
1561 1593 2.622942 CAAAAGTTCTAAGTGCCTGCCA 59.377 45.455 0.00 0.00 0.00 4.92
1562 1594 2.623416 ACAAAAGTTCTAAGTGCCTGCC 59.377 45.455 0.00 0.00 0.00 4.85
1563 1595 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
1564 1596 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
1565 1597 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
1566 1598 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
1567 1599 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
1568 1600 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
1569 1601 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
1570 1602 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
1571 1603 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
1572 1604 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
1573 1605 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
1574 1606 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
1575 1607 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
1576 1608 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
1577 1609 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
1633 1665 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
1634 1666 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
1635 1667 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
1636 1668 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
1637 1669 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
1638 1670 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
1639 1671 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
1640 1672 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
1641 1673 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
1642 1674 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
1643 1675 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
1644 1676 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
1645 1677 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
1660 1692 0.032130 TTGATCCCGAGCTCGTATGC 59.968 55.000 32.41 19.59 37.74 3.14
1661 1693 2.732412 ATTGATCCCGAGCTCGTATG 57.268 50.000 32.41 20.75 37.74 2.39
1662 1694 2.028930 GGAATTGATCCCGAGCTCGTAT 60.029 50.000 32.41 24.81 43.00 3.06
1663 1695 1.340248 GGAATTGATCCCGAGCTCGTA 59.660 52.381 32.41 21.36 43.00 3.43
1664 1696 0.105039 GGAATTGATCCCGAGCTCGT 59.895 55.000 32.41 16.41 43.00 4.18
1665 1697 2.906047 GGAATTGATCCCGAGCTCG 58.094 57.895 29.06 29.06 43.00 5.03
1674 1706 1.369625 AACACGCGGAGGAATTGATC 58.630 50.000 12.47 0.00 0.00 2.92
1675 1707 1.821216 AAACACGCGGAGGAATTGAT 58.179 45.000 12.47 0.00 0.00 2.57
1676 1708 1.600023 AAAACACGCGGAGGAATTGA 58.400 45.000 12.47 0.00 0.00 2.57
1677 1709 2.050691 CAAAAACACGCGGAGGAATTG 58.949 47.619 12.47 4.72 0.00 2.32
1678 1710 1.601914 GCAAAAACACGCGGAGGAATT 60.602 47.619 12.47 0.00 0.00 2.17
1679 1711 0.039527 GCAAAAACACGCGGAGGAAT 60.040 50.000 12.47 0.00 0.00 3.01
1680 1712 1.357334 GCAAAAACACGCGGAGGAA 59.643 52.632 12.47 0.00 0.00 3.36
1681 1713 1.781025 CTGCAAAAACACGCGGAGGA 61.781 55.000 12.47 0.00 36.59 3.71
1682 1714 1.370414 CTGCAAAAACACGCGGAGG 60.370 57.895 12.47 1.38 36.59 4.30
1683 1715 0.248458 AACTGCAAAAACACGCGGAG 60.248 50.000 12.47 4.93 37.94 4.63
1684 1716 0.171455 AAACTGCAAAAACACGCGGA 59.829 45.000 12.47 0.00 37.94 5.54
1685 1717 0.995728 AAAACTGCAAAAACACGCGG 59.004 45.000 12.47 1.27 40.48 6.46
1686 1718 1.917303 AGAAAACTGCAAAAACACGCG 59.083 42.857 3.53 3.53 0.00 6.01
1687 1719 4.561213 AGTTAGAAAACTGCAAAAACACGC 59.439 37.500 0.00 0.00 44.40 5.34
1688 1720 7.133443 GTAGTTAGAAAACTGCAAAAACACG 57.867 36.000 1.11 0.00 45.63 4.49
1700 1732 7.599245 ACACTCATACAGCAGTAGTTAGAAAAC 59.401 37.037 0.00 0.00 32.86 2.43
1725 1757 9.685828 CCATGAATTACTAGTAGCTCTTAAGAC 57.314 37.037 0.00 0.00 0.00 3.01
1838 1907 3.244582 TCCAGCTCCCAAACAACTAGTA 58.755 45.455 0.00 0.00 0.00 1.82
1839 1908 2.054799 TCCAGCTCCCAAACAACTAGT 58.945 47.619 0.00 0.00 0.00 2.57
1840 1909 2.859165 TCCAGCTCCCAAACAACTAG 57.141 50.000 0.00 0.00 0.00 2.57
1841 1910 3.199946 CCTATCCAGCTCCCAAACAACTA 59.800 47.826 0.00 0.00 0.00 2.24
1876 1945 9.025041 TCACTTGGTCATACTCATATATACCAG 57.975 37.037 2.40 1.26 37.34 4.00
1898 1967 4.885907 CCCACATATTTCTCAGCAATCACT 59.114 41.667 0.00 0.00 0.00 3.41
1917 1986 1.266178 AAGGCCTTACAAATGCCCAC 58.734 50.000 18.87 0.00 46.55 4.61
1919 1988 2.031870 CCTAAGGCCTTACAAATGCCC 58.968 52.381 21.68 0.00 46.55 5.36
1943 2012 5.297776 GCAAGCATCTCATACACACCTAAAT 59.702 40.000 0.00 0.00 0.00 1.40
1954 2025 4.252878 TCAGAAAACGCAAGCATCTCATA 58.747 39.130 0.00 0.00 45.62 2.15
1973 2044 3.131400 GCCCAAAGTACTAGAGACCTCAG 59.869 52.174 0.00 0.00 0.00 3.35
1980 2051 6.763610 CCTAATTTGAGCCCAAAGTACTAGAG 59.236 42.308 0.00 0.00 44.53 2.43
2015 2108 6.864685 CACTATGAACATTGTGCAGTTTGAAT 59.135 34.615 13.93 0.00 37.63 2.57
2023 2116 4.320421 GCACTTCACTATGAACATTGTGCA 60.320 41.667 20.14 0.00 45.79 4.57
2079 2172 4.402793 TGATGAGAAGCTCTTAGTACCCAC 59.597 45.833 0.00 0.00 0.00 4.61
2181 2274 3.711863 ACCATAAAGCCACACCATGATT 58.288 40.909 0.00 0.00 0.00 2.57
2269 2362 4.365723 AGAGTCAAAGTGCAAGCAAAATG 58.634 39.130 0.00 0.00 0.00 2.32
2333 2426 9.896645 AAGTTTATTCAAGCAGATATCTTCAGA 57.103 29.630 1.33 0.00 0.00 3.27
2386 2479 1.745653 GCAGATGTTTGAGTAAGGGGC 59.254 52.381 0.00 0.00 0.00 5.80
2413 2506 6.000219 TGAAGAAGATTCCTGTTCCAAAGAG 59.000 40.000 0.00 0.00 0.00 2.85
2415 2508 6.349944 CCATGAAGAAGATTCCTGTTCCAAAG 60.350 42.308 0.00 0.00 0.00 2.77
2416 2509 5.477984 CCATGAAGAAGATTCCTGTTCCAAA 59.522 40.000 0.00 0.00 0.00 3.28
2490 2583 6.982141 CCTTGTATCCTTTGTATGCGTAGTAA 59.018 38.462 0.00 0.00 0.00 2.24
2549 2642 3.011119 ACGAGTTTGCAAACACCTGTTA 58.989 40.909 36.46 1.08 41.30 2.41
2834 2927 0.679002 TTCAGAGAATGCAGGCAGCC 60.679 55.000 1.84 1.84 44.83 4.85
3055 3154 3.810743 GCACTAACCAACTGTTCAGGGAT 60.811 47.826 4.82 0.00 38.42 3.85
3061 3160 4.568152 AATGTGCACTAACCAACTGTTC 57.432 40.909 19.41 0.00 38.42 3.18
3068 3169 4.014569 TGCTCTAAATGTGCACTAACCA 57.985 40.909 19.41 0.00 39.83 3.67
3074 3175 7.420002 TCATCATTATTGCTCTAAATGTGCAC 58.580 34.615 10.75 10.75 43.67 4.57
3090 3191 9.217278 GAAGAAGCTGTGATACATCATCATTAT 57.783 33.333 0.00 0.00 45.37 1.28
3141 3242 8.317679 GGAAGTTGTAGCTCCTATTGATATGAT 58.682 37.037 0.00 0.00 0.00 2.45
3142 3243 7.523873 CGGAAGTTGTAGCTCCTATTGATATGA 60.524 40.741 0.00 0.00 0.00 2.15
3143 3244 6.587990 CGGAAGTTGTAGCTCCTATTGATATG 59.412 42.308 0.00 0.00 0.00 1.78
3144 3245 6.493802 TCGGAAGTTGTAGCTCCTATTGATAT 59.506 38.462 0.00 0.00 0.00 1.63
3145 3246 5.831525 TCGGAAGTTGTAGCTCCTATTGATA 59.168 40.000 0.00 0.00 0.00 2.15
3146 3247 4.649674 TCGGAAGTTGTAGCTCCTATTGAT 59.350 41.667 0.00 0.00 0.00 2.57
3147 3248 4.021229 TCGGAAGTTGTAGCTCCTATTGA 58.979 43.478 0.00 0.00 0.00 2.57
3148 3249 4.363999 CTCGGAAGTTGTAGCTCCTATTG 58.636 47.826 0.00 0.00 0.00 1.90
3149 3250 3.181474 GCTCGGAAGTTGTAGCTCCTATT 60.181 47.826 0.00 0.00 32.18 1.73
3150 3251 2.362717 GCTCGGAAGTTGTAGCTCCTAT 59.637 50.000 0.00 0.00 32.18 2.57
3151 3252 1.749634 GCTCGGAAGTTGTAGCTCCTA 59.250 52.381 0.00 0.00 32.18 2.94
3152 3253 0.533032 GCTCGGAAGTTGTAGCTCCT 59.467 55.000 0.00 0.00 32.18 3.69
3153 3254 0.246635 TGCTCGGAAGTTGTAGCTCC 59.753 55.000 0.00 0.00 35.95 4.70
3154 3255 1.336887 TGTGCTCGGAAGTTGTAGCTC 60.337 52.381 0.00 0.00 35.95 4.09
3155 3256 0.679505 TGTGCTCGGAAGTTGTAGCT 59.320 50.000 0.00 0.00 35.95 3.32
3156 3257 1.661112 GATGTGCTCGGAAGTTGTAGC 59.339 52.381 0.00 0.00 35.51 3.58
3157 3258 2.668457 GTGATGTGCTCGGAAGTTGTAG 59.332 50.000 0.00 0.00 0.00 2.74
3158 3259 2.611971 GGTGATGTGCTCGGAAGTTGTA 60.612 50.000 0.00 0.00 0.00 2.41
3159 3260 1.512926 GTGATGTGCTCGGAAGTTGT 58.487 50.000 0.00 0.00 0.00 3.32
3160 3261 0.798776 GGTGATGTGCTCGGAAGTTG 59.201 55.000 0.00 0.00 0.00 3.16
3161 3262 0.396435 TGGTGATGTGCTCGGAAGTT 59.604 50.000 0.00 0.00 0.00 2.66
3162 3263 0.320771 GTGGTGATGTGCTCGGAAGT 60.321 55.000 0.00 0.00 0.00 3.01
3163 3264 0.036952 AGTGGTGATGTGCTCGGAAG 60.037 55.000 0.00 0.00 0.00 3.46
3164 3265 0.037326 GAGTGGTGATGTGCTCGGAA 60.037 55.000 0.00 0.00 0.00 4.30
3184 3285 6.381133 ACATTTGAACCTGGAAGAAGAGTTTT 59.619 34.615 0.00 0.00 34.07 2.43
3185 3286 5.893824 ACATTTGAACCTGGAAGAAGAGTTT 59.106 36.000 0.00 0.00 34.07 2.66
3186 3287 5.449553 ACATTTGAACCTGGAAGAAGAGTT 58.550 37.500 0.00 0.00 34.07 3.01
3187 3288 5.053978 ACATTTGAACCTGGAAGAAGAGT 57.946 39.130 0.00 0.00 34.07 3.24
3188 3289 6.396829 AAACATTTGAACCTGGAAGAAGAG 57.603 37.500 0.00 0.00 34.07 2.85
3189 3290 6.490040 CCTAAACATTTGAACCTGGAAGAAGA 59.510 38.462 0.00 0.00 34.07 2.87
3190 3291 6.265422 ACCTAAACATTTGAACCTGGAAGAAG 59.735 38.462 0.00 0.00 34.07 2.85
3241 3342 6.078328 TCGGAAGAAAGTTAAGCTACTGCTG 61.078 44.000 0.00 0.00 43.48 4.41
3242 3343 4.021368 TCGGAAGAAAGTTAAGCTACTGCT 60.021 41.667 0.00 0.00 45.41 4.24
3243 3344 4.243270 TCGGAAGAAAGTTAAGCTACTGC 58.757 43.478 0.00 0.00 37.03 4.40
3259 3360 2.289002 GCCTTACATTGCAGATCGGAAG 59.711 50.000 0.00 0.00 0.00 3.46
3260 3361 2.092968 AGCCTTACATTGCAGATCGGAA 60.093 45.455 0.00 0.00 0.00 4.30
3261 3362 1.486310 AGCCTTACATTGCAGATCGGA 59.514 47.619 0.00 0.00 0.00 4.55
3262 3363 1.600957 CAGCCTTACATTGCAGATCGG 59.399 52.381 0.00 0.00 0.00 4.18
3263 3364 2.283298 ACAGCCTTACATTGCAGATCG 58.717 47.619 0.00 0.00 0.00 3.69
3264 3365 5.119279 CGTATACAGCCTTACATTGCAGATC 59.881 44.000 3.32 0.00 0.00 2.75
3265 3366 4.991056 CGTATACAGCCTTACATTGCAGAT 59.009 41.667 3.32 0.00 0.00 2.90
3266 3367 4.142026 ACGTATACAGCCTTACATTGCAGA 60.142 41.667 3.32 0.00 0.00 4.26
3267 3368 4.119862 ACGTATACAGCCTTACATTGCAG 58.880 43.478 3.32 0.00 0.00 4.41
3268 3369 4.131649 ACGTATACAGCCTTACATTGCA 57.868 40.909 3.32 0.00 0.00 4.08
3269 3370 4.147653 CGTACGTATACAGCCTTACATTGC 59.852 45.833 7.22 0.00 0.00 3.56
3270 3371 5.276270 ACGTACGTATACAGCCTTACATTG 58.724 41.667 21.41 0.00 0.00 2.82
3271 3372 5.505173 ACGTACGTATACAGCCTTACATT 57.495 39.130 21.41 0.00 0.00 2.71
3272 3373 5.276270 CAACGTACGTATACAGCCTTACAT 58.724 41.667 23.12 0.00 0.00 2.29
3273 3374 4.661125 CAACGTACGTATACAGCCTTACA 58.339 43.478 23.12 0.00 0.00 2.41
3274 3375 3.483558 GCAACGTACGTATACAGCCTTAC 59.516 47.826 23.12 0.00 0.00 2.34
3275 3376 3.378112 AGCAACGTACGTATACAGCCTTA 59.622 43.478 23.12 0.00 0.00 2.69
3276 3377 2.165030 AGCAACGTACGTATACAGCCTT 59.835 45.455 23.12 0.00 0.00 4.35
3277 3378 1.747355 AGCAACGTACGTATACAGCCT 59.253 47.619 23.12 7.34 0.00 4.58
3278 3379 1.850441 CAGCAACGTACGTATACAGCC 59.150 52.381 23.12 5.17 0.00 4.85
3279 3380 1.254570 GCAGCAACGTACGTATACAGC 59.745 52.381 23.12 19.05 0.00 4.40
3297 3398 4.646040 CCCACAGAATTTCATAGATTGGCA 59.354 41.667 0.00 0.00 0.00 4.92
3298 3399 4.646492 ACCCACAGAATTTCATAGATTGGC 59.354 41.667 0.00 0.00 0.00 4.52
3299 3400 6.377996 TGAACCCACAGAATTTCATAGATTGG 59.622 38.462 0.00 0.00 0.00 3.16
3300 3401 7.395190 TGAACCCACAGAATTTCATAGATTG 57.605 36.000 0.00 0.00 0.00 2.67
3301 3402 8.421249 TTTGAACCCACAGAATTTCATAGATT 57.579 30.769 0.00 0.00 0.00 2.40
3302 3403 8.421249 TTTTGAACCCACAGAATTTCATAGAT 57.579 30.769 0.00 0.00 0.00 1.98
3303 3404 7.831691 TTTTGAACCCACAGAATTTCATAGA 57.168 32.000 0.00 0.00 0.00 1.98
3304 3405 8.359642 TCTTTTTGAACCCACAGAATTTCATAG 58.640 33.333 0.00 0.00 0.00 2.23
3305 3406 8.243961 TCTTTTTGAACCCACAGAATTTCATA 57.756 30.769 0.00 0.00 0.00 2.15
3306 3407 7.069826 TCTCTTTTTGAACCCACAGAATTTCAT 59.930 33.333 0.00 0.00 0.00 2.57
3356 3459 8.397906 GGTCAATTTTCATCTCATCGAAATGTA 58.602 33.333 0.00 0.00 34.32 2.29
3357 3460 7.094248 TGGTCAATTTTCATCTCATCGAAATGT 60.094 33.333 0.00 0.00 34.32 2.71
3358 3461 7.252708 TGGTCAATTTTCATCTCATCGAAATG 58.747 34.615 0.00 0.00 31.54 2.32
3359 3462 7.395190 TGGTCAATTTTCATCTCATCGAAAT 57.605 32.000 0.00 0.00 31.54 2.17
3360 3463 6.816134 TGGTCAATTTTCATCTCATCGAAA 57.184 33.333 0.00 0.00 0.00 3.46
3361 3464 6.430925 ACTTGGTCAATTTTCATCTCATCGAA 59.569 34.615 0.00 0.00 0.00 3.71
3362 3465 5.939883 ACTTGGTCAATTTTCATCTCATCGA 59.060 36.000 0.00 0.00 0.00 3.59
3363 3466 6.187125 ACTTGGTCAATTTTCATCTCATCG 57.813 37.500 0.00 0.00 0.00 3.84
3364 3467 8.514594 TGTAACTTGGTCAATTTTCATCTCATC 58.485 33.333 0.00 0.00 0.00 2.92
3365 3468 8.408043 TGTAACTTGGTCAATTTTCATCTCAT 57.592 30.769 0.00 0.00 0.00 2.90
3366 3469 7.815840 TGTAACTTGGTCAATTTTCATCTCA 57.184 32.000 0.00 0.00 0.00 3.27
3367 3470 8.968242 GTTTGTAACTTGGTCAATTTTCATCTC 58.032 33.333 0.00 0.00 0.00 2.75
3368 3471 8.695456 AGTTTGTAACTTGGTCAATTTTCATCT 58.305 29.630 0.00 0.00 39.04 2.90
3369 3472 8.871686 AGTTTGTAACTTGGTCAATTTTCATC 57.128 30.769 0.00 0.00 39.04 2.92
3385 3488 9.376075 GGAGGGAGTACTAAATAAGTTTGTAAC 57.624 37.037 0.00 0.00 39.80 2.50
3386 3489 8.253113 CGGAGGGAGTACTAAATAAGTTTGTAA 58.747 37.037 0.00 0.00 39.80 2.41
3387 3490 7.397192 ACGGAGGGAGTACTAAATAAGTTTGTA 59.603 37.037 0.00 0.00 39.80 2.41
3388 3491 6.212187 ACGGAGGGAGTACTAAATAAGTTTGT 59.788 38.462 0.00 0.00 39.80 2.83
3389 3492 6.637657 ACGGAGGGAGTACTAAATAAGTTTG 58.362 40.000 0.00 0.00 39.80 2.93
3390 3493 6.864151 ACGGAGGGAGTACTAAATAAGTTT 57.136 37.500 0.00 0.00 39.80 2.66
3391 3494 6.127225 GGAACGGAGGGAGTACTAAATAAGTT 60.127 42.308 0.00 0.00 39.80 2.66
3392 3495 5.362143 GGAACGGAGGGAGTACTAAATAAGT 59.638 44.000 0.00 0.00 42.62 2.24
3393 3496 5.840715 GGAACGGAGGGAGTACTAAATAAG 58.159 45.833 0.00 0.00 0.00 1.73
3394 3497 5.859205 GGAACGGAGGGAGTACTAAATAA 57.141 43.478 0.00 0.00 0.00 1.40
3412 3515 4.154556 TCCCAACGACAATTATTTCGGAAC 59.845 41.667 11.73 0.00 39.63 3.62
3413 3516 4.325119 TCCCAACGACAATTATTTCGGAA 58.675 39.130 11.73 0.00 39.63 4.30
3414 3517 3.936453 CTCCCAACGACAATTATTTCGGA 59.064 43.478 11.73 0.00 39.63 4.55
3415 3518 3.687698 ACTCCCAACGACAATTATTTCGG 59.312 43.478 11.73 0.00 39.63 4.30
3416 3519 4.939509 ACTCCCAACGACAATTATTTCG 57.060 40.909 0.00 7.56 41.14 3.46
3417 3520 6.909909 AGAAACTCCCAACGACAATTATTTC 58.090 36.000 0.00 0.00 0.00 2.17
3418 3521 6.894339 AGAAACTCCCAACGACAATTATTT 57.106 33.333 0.00 0.00 0.00 1.40
3419 3522 7.119262 CACTAGAAACTCCCAACGACAATTATT 59.881 37.037 0.00 0.00 0.00 1.40
3420 3523 6.594159 CACTAGAAACTCCCAACGACAATTAT 59.406 38.462 0.00 0.00 0.00 1.28
3421 3524 5.929992 CACTAGAAACTCCCAACGACAATTA 59.070 40.000 0.00 0.00 0.00 1.40
3422 3525 4.755123 CACTAGAAACTCCCAACGACAATT 59.245 41.667 0.00 0.00 0.00 2.32
3423 3526 4.315803 CACTAGAAACTCCCAACGACAAT 58.684 43.478 0.00 0.00 0.00 2.71
3424 3527 3.724374 CACTAGAAACTCCCAACGACAA 58.276 45.455 0.00 0.00 0.00 3.18
3425 3528 2.547218 GCACTAGAAACTCCCAACGACA 60.547 50.000 0.00 0.00 0.00 4.35
3426 3529 2.067013 GCACTAGAAACTCCCAACGAC 58.933 52.381 0.00 0.00 0.00 4.34
3427 3530 1.689813 TGCACTAGAAACTCCCAACGA 59.310 47.619 0.00 0.00 0.00 3.85
3428 3531 2.163818 TGCACTAGAAACTCCCAACG 57.836 50.000 0.00 0.00 0.00 4.10
3429 3532 5.453567 AAATTGCACTAGAAACTCCCAAC 57.546 39.130 0.00 0.00 0.00 3.77
3430 3533 4.522789 GGAAATTGCACTAGAAACTCCCAA 59.477 41.667 0.00 0.00 0.00 4.12
3431 3534 4.079253 GGAAATTGCACTAGAAACTCCCA 58.921 43.478 0.00 0.00 0.00 4.37
3432 3535 3.127030 CGGAAATTGCACTAGAAACTCCC 59.873 47.826 0.00 0.00 0.00 4.30
3433 3536 3.426292 GCGGAAATTGCACTAGAAACTCC 60.426 47.826 0.00 0.00 0.00 3.85
3434 3537 3.426292 GGCGGAAATTGCACTAGAAACTC 60.426 47.826 0.00 0.00 0.00 3.01
3435 3538 2.488153 GGCGGAAATTGCACTAGAAACT 59.512 45.455 0.00 0.00 0.00 2.66
3436 3539 2.727916 CGGCGGAAATTGCACTAGAAAC 60.728 50.000 0.00 0.00 0.00 2.78
3437 3540 1.466950 CGGCGGAAATTGCACTAGAAA 59.533 47.619 0.00 0.00 0.00 2.52
3438 3541 1.083489 CGGCGGAAATTGCACTAGAA 58.917 50.000 0.00 0.00 0.00 2.10
3439 3542 1.366111 GCGGCGGAAATTGCACTAGA 61.366 55.000 9.78 0.00 0.00 2.43
3440 3543 1.062525 GCGGCGGAAATTGCACTAG 59.937 57.895 9.78 0.00 0.00 2.57
3441 3544 2.745785 CGCGGCGGAAATTGCACTA 61.746 57.895 15.84 0.00 0.00 2.74
3442 3545 4.101790 CGCGGCGGAAATTGCACT 62.102 61.111 15.84 0.00 0.00 4.40
3443 3546 2.515947 TAACGCGGCGGAAATTGCAC 62.516 55.000 27.37 0.00 0.00 4.57
3444 3547 2.325835 TAACGCGGCGGAAATTGCA 61.326 52.632 27.37 0.00 0.00 4.08
3445 3548 1.866059 GTAACGCGGCGGAAATTGC 60.866 57.895 27.37 11.30 0.00 3.56
3446 3549 1.579122 CGTAACGCGGCGGAAATTG 60.579 57.895 27.37 7.25 36.85 2.32
3447 3550 1.737371 TCGTAACGCGGCGGAAATT 60.737 52.632 27.37 13.91 41.72 1.82
3448 3551 2.125991 TCGTAACGCGGCGGAAAT 60.126 55.556 27.37 11.95 41.72 2.17
3449 3552 3.105157 GTCGTAACGCGGCGGAAA 61.105 61.111 27.37 8.43 41.72 3.13
3454 3557 0.247145 CAGAAATGTCGTAACGCGGC 60.247 55.000 12.47 0.00 46.88 6.53
3455 3558 1.058695 GACAGAAATGTCGTAACGCGG 59.941 52.381 12.47 0.00 41.72 6.46
3456 3559 2.398903 GACAGAAATGTCGTAACGCG 57.601 50.000 3.53 3.53 43.01 6.01
3476 3579 1.348696 TGGGAGGGTAGTTTCGGAAAC 59.651 52.381 22.74 22.74 41.69 2.78
3477 3580 1.348696 GTGGGAGGGTAGTTTCGGAAA 59.651 52.381 0.00 0.00 0.00 3.13
3478 3581 0.978907 GTGGGAGGGTAGTTTCGGAA 59.021 55.000 0.00 0.00 0.00 4.30
3479 3582 0.115745 AGTGGGAGGGTAGTTTCGGA 59.884 55.000 0.00 0.00 0.00 4.55
3480 3583 0.535797 GAGTGGGAGGGTAGTTTCGG 59.464 60.000 0.00 0.00 0.00 4.30
3481 3584 1.477295 GAGAGTGGGAGGGTAGTTTCG 59.523 57.143 0.00 0.00 0.00 3.46
3482 3585 2.822697 AGAGAGTGGGAGGGTAGTTTC 58.177 52.381 0.00 0.00 0.00 2.78
3483 3586 2.907042 CAAGAGAGTGGGAGGGTAGTTT 59.093 50.000 0.00 0.00 0.00 2.66
3484 3587 2.541466 CAAGAGAGTGGGAGGGTAGTT 58.459 52.381 0.00 0.00 0.00 2.24
3485 3588 1.897647 GCAAGAGAGTGGGAGGGTAGT 60.898 57.143 0.00 0.00 0.00 2.73
3486 3589 0.827368 GCAAGAGAGTGGGAGGGTAG 59.173 60.000 0.00 0.00 0.00 3.18
3487 3590 0.413832 AGCAAGAGAGTGGGAGGGTA 59.586 55.000 0.00 0.00 0.00 3.69
3488 3591 0.907230 GAGCAAGAGAGTGGGAGGGT 60.907 60.000 0.00 0.00 0.00 4.34
3489 3592 1.904032 GAGCAAGAGAGTGGGAGGG 59.096 63.158 0.00 0.00 0.00 4.30
3490 3593 1.515020 CGAGCAAGAGAGTGGGAGG 59.485 63.158 0.00 0.00 0.00 4.30
3491 3594 1.153667 GCGAGCAAGAGAGTGGGAG 60.154 63.158 0.00 0.00 0.00 4.30
3492 3595 1.599606 GAGCGAGCAAGAGAGTGGGA 61.600 60.000 0.00 0.00 0.00 4.37
3493 3596 1.153667 GAGCGAGCAAGAGAGTGGG 60.154 63.158 0.00 0.00 0.00 4.61
3494 3597 0.458197 CTGAGCGAGCAAGAGAGTGG 60.458 60.000 0.00 0.00 0.00 4.00
3495 3598 3.033114 CTGAGCGAGCAAGAGAGTG 57.967 57.895 0.00 0.00 0.00 3.51
3505 3608 2.508887 GTGGCTGAGCTGAGCGAG 60.509 66.667 19.24 0.00 40.13 5.03
3506 3609 2.993840 AGTGGCTGAGCTGAGCGA 60.994 61.111 19.24 12.93 40.13 4.93
3507 3610 2.508887 GAGTGGCTGAGCTGAGCG 60.509 66.667 19.24 0.00 40.13 5.03
3508 3611 2.508887 CGAGTGGCTGAGCTGAGC 60.509 66.667 17.74 17.74 38.34 4.26
3509 3612 2.508887 GCGAGTGGCTGAGCTGAG 60.509 66.667 3.72 0.00 39.11 3.35
3526 3629 4.821589 GGTTCGGGAGCCAGCGAG 62.822 72.222 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.