Multiple sequence alignment - TraesCS6D01G142600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G142600 chr6D 100.000 4652 0 0 1 4652 112943311 112938660 0.000000e+00 8591.0
1 TraesCS6D01G142600 chr6D 95.530 604 26 1 178 780 203622632 203623235 0.000000e+00 965.0
2 TraesCS6D01G142600 chr6D 95.530 604 25 2 178 780 238806306 238805704 0.000000e+00 965.0
3 TraesCS6D01G142600 chr6D 97.059 68 2 0 3299 3366 112939977 112939910 1.060000e-21 115.0
4 TraesCS6D01G142600 chr6D 97.059 68 2 0 3335 3402 112940013 112939946 1.060000e-21 115.0
5 TraesCS6D01G142600 chr6A 94.330 3686 129 33 871 4485 140608132 140604456 0.000000e+00 5576.0
6 TraesCS6D01G142600 chr6A 90.816 98 7 2 778 874 140608500 140608404 3.780000e-26 130.0
7 TraesCS6D01G142600 chr6A 95.588 68 3 0 3299 3366 140605634 140605567 4.920000e-20 110.0
8 TraesCS6D01G142600 chr6A 96.875 32 1 0 3371 3402 140605670 140605639 2.000000e-03 54.7
9 TraesCS6D01G142600 chr6B 95.298 2616 76 11 781 3366 202352079 202349481 0.000000e+00 4106.0
10 TraesCS6D01G142600 chr6B 94.354 797 23 3 3335 4131 202349548 202348774 0.000000e+00 1203.0
11 TraesCS6D01G142600 chr6B 91.317 357 24 2 4132 4486 202348440 202348089 9.050000e-132 481.0
12 TraesCS6D01G142600 chr6B 96.875 32 1 0 3371 3402 202349548 202349517 2.000000e-03 54.7
13 TraesCS6D01G142600 chr2D 95.695 604 25 1 178 780 286033468 286034071 0.000000e+00 970.0
14 TraesCS6D01G142600 chr2D 94.660 618 31 2 165 780 265013254 265013871 0.000000e+00 957.0
15 TraesCS6D01G142600 chr2D 91.304 92 8 0 4516 4607 560589967 560590058 4.890000e-25 126.0
16 TraesCS6D01G142600 chr4D 95.530 604 25 2 178 780 212525856 212526458 0.000000e+00 965.0
17 TraesCS6D01G142600 chr5D 94.822 618 30 2 165 780 188627262 188626645 0.000000e+00 963.0
18 TraesCS6D01G142600 chr5D 87.313 134 14 3 4483 4616 528996877 528997007 2.900000e-32 150.0
19 TraesCS6D01G142600 chr7D 94.660 618 31 2 165 780 338258571 338259188 0.000000e+00 957.0
20 TraesCS6D01G142600 chr7D 94.660 618 31 2 165 780 341099012 341098395 0.000000e+00 957.0
21 TraesCS6D01G142600 chr7D 86.555 119 16 0 4492 4610 108614986 108614868 1.050000e-26 132.0
22 TraesCS6D01G142600 chr3D 94.660 618 31 2 165 780 242913466 242914083 0.000000e+00 957.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G142600 chr6D 112938660 112943311 4651 True 2940.333333 8591 98.039333 1 4652 3 chr6D.!!$R2 4651
1 TraesCS6D01G142600 chr6D 203622632 203623235 603 False 965.000000 965 95.530000 178 780 1 chr6D.!!$F1 602
2 TraesCS6D01G142600 chr6D 238805704 238806306 602 True 965.000000 965 95.530000 178 780 1 chr6D.!!$R1 602
3 TraesCS6D01G142600 chr6A 140604456 140608500 4044 True 1467.675000 5576 94.402250 778 4485 4 chr6A.!!$R1 3707
4 TraesCS6D01G142600 chr6B 202348089 202352079 3990 True 1461.175000 4106 94.461000 781 4486 4 chr6B.!!$R1 3705
5 TraesCS6D01G142600 chr2D 286033468 286034071 603 False 970.000000 970 95.695000 178 780 1 chr2D.!!$F2 602
6 TraesCS6D01G142600 chr2D 265013254 265013871 617 False 957.000000 957 94.660000 165 780 1 chr2D.!!$F1 615
7 TraesCS6D01G142600 chr4D 212525856 212526458 602 False 965.000000 965 95.530000 178 780 1 chr4D.!!$F1 602
8 TraesCS6D01G142600 chr5D 188626645 188627262 617 True 963.000000 963 94.822000 165 780 1 chr5D.!!$R1 615
9 TraesCS6D01G142600 chr7D 338258571 338259188 617 False 957.000000 957 94.660000 165 780 1 chr7D.!!$F1 615
10 TraesCS6D01G142600 chr7D 341098395 341099012 617 True 957.000000 957 94.660000 165 780 1 chr7D.!!$R2 615
11 TraesCS6D01G142600 chr3D 242913466 242914083 617 False 957.000000 957 94.660000 165 780 1 chr3D.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.104855 TCAGATTAAGCAGCGCCGAT 59.895 50.0 2.29 0.0 0.00 4.18 F
1069 1374 0.733909 CGTCTCAGCATGCGTCTTCA 60.734 55.0 13.01 0.0 34.76 3.02 F
2005 2321 0.320421 TGGACTTACACTTCGCCAGC 60.320 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2300 0.319211 TGGCGAAGTGTAAGTCCACG 60.319 55.0 0.00 0.0 40.33 4.94 R
2343 2661 1.039068 CACCACCAATGCAAAGGACA 58.961 50.0 14.09 0.0 0.00 4.02 R
3783 4102 0.250901 GTCCCAGGCAAGCTCAAAGA 60.251 55.0 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.761651 TGACTTCATCAATCTCAATAACTCG 57.238 36.000 0.00 0.00 33.02 4.18
29 30 6.256539 TGACTTCATCAATCTCAATAACTCGC 59.743 38.462 0.00 0.00 33.02 5.03
30 31 5.525378 ACTTCATCAATCTCAATAACTCGCC 59.475 40.000 0.00 0.00 0.00 5.54
31 32 5.022282 TCATCAATCTCAATAACTCGCCA 57.978 39.130 0.00 0.00 0.00 5.69
32 33 5.427378 TCATCAATCTCAATAACTCGCCAA 58.573 37.500 0.00 0.00 0.00 4.52
33 34 5.294306 TCATCAATCTCAATAACTCGCCAAC 59.706 40.000 0.00 0.00 0.00 3.77
34 35 4.832248 TCAATCTCAATAACTCGCCAACT 58.168 39.130 0.00 0.00 0.00 3.16
35 36 4.870426 TCAATCTCAATAACTCGCCAACTC 59.130 41.667 0.00 0.00 0.00 3.01
36 37 4.744795 ATCTCAATAACTCGCCAACTCT 57.255 40.909 0.00 0.00 0.00 3.24
37 38 5.854010 ATCTCAATAACTCGCCAACTCTA 57.146 39.130 0.00 0.00 0.00 2.43
38 39 4.995124 TCTCAATAACTCGCCAACTCTAC 58.005 43.478 0.00 0.00 0.00 2.59
39 40 4.113354 CTCAATAACTCGCCAACTCTACC 58.887 47.826 0.00 0.00 0.00 3.18
40 41 3.512329 TCAATAACTCGCCAACTCTACCA 59.488 43.478 0.00 0.00 0.00 3.25
41 42 4.161565 TCAATAACTCGCCAACTCTACCAT 59.838 41.667 0.00 0.00 0.00 3.55
42 43 2.386661 AACTCGCCAACTCTACCATG 57.613 50.000 0.00 0.00 0.00 3.66
43 44 1.557099 ACTCGCCAACTCTACCATGA 58.443 50.000 0.00 0.00 0.00 3.07
44 45 1.899814 ACTCGCCAACTCTACCATGAA 59.100 47.619 0.00 0.00 0.00 2.57
45 46 2.093973 ACTCGCCAACTCTACCATGAAG 60.094 50.000 0.00 0.00 0.00 3.02
46 47 2.166459 CTCGCCAACTCTACCATGAAGA 59.834 50.000 0.00 0.00 0.00 2.87
47 48 2.766263 TCGCCAACTCTACCATGAAGAT 59.234 45.455 0.00 0.00 0.00 2.40
48 49 2.868583 CGCCAACTCTACCATGAAGATG 59.131 50.000 0.00 0.00 0.00 2.90
49 50 2.615912 GCCAACTCTACCATGAAGATGC 59.384 50.000 0.00 0.00 0.00 3.91
50 51 3.683847 GCCAACTCTACCATGAAGATGCT 60.684 47.826 0.00 0.00 0.00 3.79
51 52 4.443457 GCCAACTCTACCATGAAGATGCTA 60.443 45.833 0.00 0.00 0.00 3.49
52 53 5.744300 GCCAACTCTACCATGAAGATGCTAT 60.744 44.000 0.00 0.00 0.00 2.97
53 54 5.699915 CCAACTCTACCATGAAGATGCTATG 59.300 44.000 0.00 0.00 0.00 2.23
54 55 5.480642 ACTCTACCATGAAGATGCTATGG 57.519 43.478 0.00 0.00 45.37 2.74
55 56 5.150715 ACTCTACCATGAAGATGCTATGGA 58.849 41.667 9.28 0.00 43.15 3.41
56 57 5.784390 ACTCTACCATGAAGATGCTATGGAT 59.216 40.000 9.28 0.00 43.15 3.41
57 58 6.956435 ACTCTACCATGAAGATGCTATGGATA 59.044 38.462 9.28 0.00 43.15 2.59
58 59 7.123997 ACTCTACCATGAAGATGCTATGGATAG 59.876 40.741 9.28 7.35 43.15 2.08
59 60 5.432680 ACCATGAAGATGCTATGGATAGG 57.567 43.478 9.28 0.00 43.15 2.57
60 61 4.226846 ACCATGAAGATGCTATGGATAGGG 59.773 45.833 9.28 0.00 43.15 3.53
61 62 4.226846 CCATGAAGATGCTATGGATAGGGT 59.773 45.833 0.00 0.00 43.15 4.34
62 63 4.897509 TGAAGATGCTATGGATAGGGTG 57.102 45.455 0.00 0.00 0.00 4.61
63 64 4.234550 TGAAGATGCTATGGATAGGGTGT 58.765 43.478 0.00 0.00 0.00 4.16
64 65 4.040829 TGAAGATGCTATGGATAGGGTGTG 59.959 45.833 0.00 0.00 0.00 3.82
65 66 2.304180 AGATGCTATGGATAGGGTGTGC 59.696 50.000 0.00 0.00 0.00 4.57
66 67 1.506025 TGCTATGGATAGGGTGTGCA 58.494 50.000 0.00 0.00 0.00 4.57
67 68 2.057140 TGCTATGGATAGGGTGTGCAT 58.943 47.619 0.00 0.00 0.00 3.96
68 69 2.224597 TGCTATGGATAGGGTGTGCATG 60.225 50.000 0.00 0.00 0.00 4.06
69 70 2.430465 CTATGGATAGGGTGTGCATGC 58.570 52.381 11.82 11.82 0.00 4.06
70 71 0.552363 ATGGATAGGGTGTGCATGCA 59.448 50.000 18.46 18.46 0.00 3.96
71 72 0.552363 TGGATAGGGTGTGCATGCAT 59.448 50.000 25.64 10.06 0.00 3.96
72 73 1.773653 TGGATAGGGTGTGCATGCATA 59.226 47.619 25.64 19.63 0.00 3.14
73 74 2.376181 TGGATAGGGTGTGCATGCATAT 59.624 45.455 25.64 16.71 0.00 1.78
74 75 2.751259 GGATAGGGTGTGCATGCATATG 59.249 50.000 25.64 0.00 37.36 1.78
75 76 3.559811 GGATAGGGTGTGCATGCATATGA 60.560 47.826 25.64 8.01 36.36 2.15
76 77 2.440517 AGGGTGTGCATGCATATGAA 57.559 45.000 25.64 4.77 36.36 2.57
77 78 2.953453 AGGGTGTGCATGCATATGAAT 58.047 42.857 25.64 6.05 36.36 2.57
78 79 2.626266 AGGGTGTGCATGCATATGAATG 59.374 45.455 25.64 18.23 36.36 2.67
79 80 2.624364 GGGTGTGCATGCATATGAATGA 59.376 45.455 25.48 9.32 36.36 2.57
80 81 3.257375 GGGTGTGCATGCATATGAATGAT 59.743 43.478 25.48 0.00 36.36 2.45
81 82 4.234574 GGTGTGCATGCATATGAATGATG 58.765 43.478 25.48 12.44 36.36 3.07
89 90 4.236755 GCATATGAATGATGCGTCTACG 57.763 45.455 6.97 0.00 40.29 3.51
90 91 3.675225 GCATATGAATGATGCGTCTACGT 59.325 43.478 6.97 0.00 40.29 3.57
91 92 4.433413 GCATATGAATGATGCGTCTACGTG 60.433 45.833 6.97 0.00 40.29 4.49
92 93 2.931512 TGAATGATGCGTCTACGTGA 57.068 45.000 7.58 0.00 42.22 4.35
93 94 2.797491 TGAATGATGCGTCTACGTGAG 58.203 47.619 7.58 0.00 42.22 3.51
94 95 7.275182 CATATGAATGATGCGTCTACGTGAGT 61.275 42.308 7.58 0.00 41.15 3.41
95 96 3.375922 TGAATGATGCGTCTACGTGAGTA 59.624 43.478 7.58 0.00 46.88 2.59
110 111 6.764877 ACGTGAGTATGTGTAACTTTCTTG 57.235 37.500 0.00 0.00 46.88 3.02
111 112 6.509656 ACGTGAGTATGTGTAACTTTCTTGA 58.490 36.000 0.00 0.00 46.88 3.02
112 113 6.982141 ACGTGAGTATGTGTAACTTTCTTGAA 59.018 34.615 0.00 0.00 46.88 2.69
113 114 7.656137 ACGTGAGTATGTGTAACTTTCTTGAAT 59.344 33.333 0.00 0.00 46.88 2.57
114 115 7.952101 CGTGAGTATGTGTAACTTTCTTGAATG 59.048 37.037 0.00 0.00 38.04 2.67
115 116 8.988934 GTGAGTATGTGTAACTTTCTTGAATGA 58.011 33.333 3.74 0.00 38.04 2.57
116 117 9.554395 TGAGTATGTGTAACTTTCTTGAATGAA 57.446 29.630 3.74 0.00 38.04 2.57
127 128 9.898152 AACTTTCTTGAATGAAAAATAAACCCA 57.102 25.926 3.74 0.00 35.79 4.51
128 129 9.898152 ACTTTCTTGAATGAAAAATAAACCCAA 57.102 25.926 3.74 0.00 35.79 4.12
130 131 9.898152 TTTCTTGAATGAAAAATAAACCCAACT 57.102 25.926 0.00 0.00 33.59 3.16
131 132 9.541143 TTCTTGAATGAAAAATAAACCCAACTC 57.459 29.630 0.00 0.00 0.00 3.01
132 133 7.865385 TCTTGAATGAAAAATAAACCCAACTCG 59.135 33.333 0.00 0.00 0.00 4.18
133 134 7.278461 TGAATGAAAAATAAACCCAACTCGA 57.722 32.000 0.00 0.00 0.00 4.04
134 135 7.142680 TGAATGAAAAATAAACCCAACTCGAC 58.857 34.615 0.00 0.00 0.00 4.20
135 136 6.642707 ATGAAAAATAAACCCAACTCGACA 57.357 33.333 0.00 0.00 0.00 4.35
136 137 6.452494 TGAAAAATAAACCCAACTCGACAA 57.548 33.333 0.00 0.00 0.00 3.18
137 138 6.864342 TGAAAAATAAACCCAACTCGACAAA 58.136 32.000 0.00 0.00 0.00 2.83
138 139 6.975772 TGAAAAATAAACCCAACTCGACAAAG 59.024 34.615 0.00 0.00 0.00 2.77
139 140 6.702716 AAAATAAACCCAACTCGACAAAGA 57.297 33.333 0.00 0.00 0.00 2.52
140 141 6.894339 AAATAAACCCAACTCGACAAAGAT 57.106 33.333 0.00 0.00 0.00 2.40
141 142 6.894339 AATAAACCCAACTCGACAAAGATT 57.106 33.333 0.00 0.00 0.00 2.40
142 143 4.568152 AAACCCAACTCGACAAAGATTG 57.432 40.909 0.00 0.00 0.00 2.67
143 144 3.485463 ACCCAACTCGACAAAGATTGA 57.515 42.857 0.00 0.00 0.00 2.57
144 145 3.139077 ACCCAACTCGACAAAGATTGAC 58.861 45.455 0.00 0.00 0.00 3.18
145 146 3.138304 CCCAACTCGACAAAGATTGACA 58.862 45.455 0.00 0.00 0.00 3.58
146 147 3.187227 CCCAACTCGACAAAGATTGACAG 59.813 47.826 0.00 0.00 0.00 3.51
147 148 4.058124 CCAACTCGACAAAGATTGACAGA 58.942 43.478 0.00 0.00 0.00 3.41
148 149 4.692625 CCAACTCGACAAAGATTGACAGAT 59.307 41.667 0.00 0.00 0.00 2.90
149 150 5.869344 CCAACTCGACAAAGATTGACAGATA 59.131 40.000 0.00 0.00 0.00 1.98
150 151 6.035435 CCAACTCGACAAAGATTGACAGATAG 59.965 42.308 0.00 0.00 0.00 2.08
151 152 5.655488 ACTCGACAAAGATTGACAGATAGG 58.345 41.667 0.00 0.00 0.00 2.57
152 153 5.419155 ACTCGACAAAGATTGACAGATAGGA 59.581 40.000 0.00 0.00 0.00 2.94
153 154 6.071334 ACTCGACAAAGATTGACAGATAGGAA 60.071 38.462 0.00 0.00 0.00 3.36
154 155 6.333416 TCGACAAAGATTGACAGATAGGAAG 58.667 40.000 0.00 0.00 0.00 3.46
155 156 6.071334 TCGACAAAGATTGACAGATAGGAAGT 60.071 38.462 0.00 0.00 0.00 3.01
156 157 7.122204 TCGACAAAGATTGACAGATAGGAAGTA 59.878 37.037 0.00 0.00 0.00 2.24
157 158 7.433719 CGACAAAGATTGACAGATAGGAAGTAG 59.566 40.741 0.00 0.00 0.00 2.57
158 159 7.044798 ACAAAGATTGACAGATAGGAAGTAGC 58.955 38.462 0.00 0.00 0.00 3.58
159 160 6.798427 AAGATTGACAGATAGGAAGTAGCA 57.202 37.500 0.00 0.00 0.00 3.49
160 161 6.403866 AGATTGACAGATAGGAAGTAGCAG 57.596 41.667 0.00 0.00 0.00 4.24
161 162 5.304101 AGATTGACAGATAGGAAGTAGCAGG 59.696 44.000 0.00 0.00 0.00 4.85
162 163 4.251103 TGACAGATAGGAAGTAGCAGGA 57.749 45.455 0.00 0.00 0.00 3.86
163 164 4.809193 TGACAGATAGGAAGTAGCAGGAT 58.191 43.478 0.00 0.00 0.00 3.24
164 165 5.211973 TGACAGATAGGAAGTAGCAGGATT 58.788 41.667 0.00 0.00 0.00 3.01
165 166 5.069648 TGACAGATAGGAAGTAGCAGGATTG 59.930 44.000 0.00 0.00 0.00 2.67
166 167 4.346418 ACAGATAGGAAGTAGCAGGATTGG 59.654 45.833 0.00 0.00 0.00 3.16
167 168 4.590647 CAGATAGGAAGTAGCAGGATTGGA 59.409 45.833 0.00 0.00 0.00 3.53
168 169 4.591072 AGATAGGAAGTAGCAGGATTGGAC 59.409 45.833 0.00 0.00 0.00 4.02
169 170 1.482593 AGGAAGTAGCAGGATTGGACG 59.517 52.381 0.00 0.00 0.00 4.79
170 171 1.480954 GGAAGTAGCAGGATTGGACGA 59.519 52.381 0.00 0.00 0.00 4.20
171 172 2.482142 GGAAGTAGCAGGATTGGACGAG 60.482 54.545 0.00 0.00 0.00 4.18
172 173 2.145397 AGTAGCAGGATTGGACGAGA 57.855 50.000 0.00 0.00 0.00 4.04
173 174 2.672098 AGTAGCAGGATTGGACGAGAT 58.328 47.619 0.00 0.00 0.00 2.75
174 175 3.034635 AGTAGCAGGATTGGACGAGATT 58.965 45.455 0.00 0.00 0.00 2.40
175 176 2.322355 AGCAGGATTGGACGAGATTG 57.678 50.000 0.00 0.00 0.00 2.67
176 177 1.833630 AGCAGGATTGGACGAGATTGA 59.166 47.619 0.00 0.00 0.00 2.57
191 192 9.424319 GGACGAGATTGAATATACAACATGTAT 57.576 33.333 0.00 8.00 44.89 2.29
230 231 4.978083 AGCCACATTTCAGATTAAGCAG 57.022 40.909 0.00 0.00 0.00 4.24
237 238 0.104855 TCAGATTAAGCAGCGCCGAT 59.895 50.000 2.29 0.00 0.00 4.18
258 259 4.442375 TGACGGCTTTGTTTTCAAGAAA 57.558 36.364 0.00 0.00 41.09 2.52
422 424 6.488344 TGTTTTGTCTAATTGCAGGTGTATGA 59.512 34.615 0.00 0.00 0.00 2.15
532 534 5.449862 CCAAGAGAAGATAGAGTCCAAGTCG 60.450 48.000 0.00 0.00 0.00 4.18
534 536 2.691011 AGAAGATAGAGTCCAAGTCGCC 59.309 50.000 0.00 0.00 0.00 5.54
544 546 1.300620 CAAGTCGCCCACGTTCTGA 60.301 57.895 0.00 0.00 41.18 3.27
563 565 3.264947 TGAATTCAGATTCGGACTGCAG 58.735 45.455 13.48 13.48 43.75 4.41
589 591 1.981256 ACCTGACTCAAAACGCCAAT 58.019 45.000 0.00 0.00 0.00 3.16
608 610 6.617879 GCCAATAACTTTTTCATACGGACTT 58.382 36.000 0.00 0.00 0.00 3.01
705 707 3.418047 TCGTCCGGAGCATTGAGATATA 58.582 45.455 3.06 0.00 0.00 0.86
708 710 4.097135 CGTCCGGAGCATTGAGATATAGAT 59.903 45.833 3.06 0.00 0.00 1.98
823 825 6.983890 GGGATTTGAAAAGAGTTTTGTTGCTA 59.016 34.615 0.00 0.00 31.94 3.49
834 836 6.821665 AGAGTTTTGTTGCTACTCTTTGTGTA 59.178 34.615 0.00 0.00 44.58 2.90
990 1269 8.241367 TCTTTCTCAAAAACTTGTTGTACTTCC 58.759 33.333 0.00 0.00 0.00 3.46
1069 1374 0.733909 CGTCTCAGCATGCGTCTTCA 60.734 55.000 13.01 0.00 34.76 3.02
1158 1463 1.524849 GCAATTCTCGCCCTCCTCC 60.525 63.158 0.00 0.00 0.00 4.30
1214 1519 2.000825 GCCCTGATTTCCCCTCCTCC 62.001 65.000 0.00 0.00 0.00 4.30
1215 1520 1.700042 CCCTGATTTCCCCTCCTCCG 61.700 65.000 0.00 0.00 0.00 4.63
1258 1563 3.368571 AAGAGCCTTTGCCTGCGC 61.369 61.111 0.00 0.00 38.69 6.09
1672 1988 2.537529 CGTGGTATTGCAATTGCTCGAG 60.538 50.000 29.37 8.45 42.66 4.04
1708 2024 4.201744 GCACACCATTAATTGATTGCTTGC 60.202 41.667 8.75 0.00 0.00 4.01
1725 2041 4.876107 TGCTTGCTTGATTAGGCTAAGTAC 59.124 41.667 13.15 7.39 0.00 2.73
1777 2093 3.243501 GGCACTGCAAATTTCTGTCTTGA 60.244 43.478 2.82 0.00 0.00 3.02
1894 2210 4.071423 TCTTCAAAGATGGTGCGATTTCA 58.929 39.130 0.00 0.00 0.00 2.69
1984 2300 8.931385 ATGGTAAATGCTGATGAAAAATACAC 57.069 30.769 0.00 0.00 0.00 2.90
2005 2321 0.320421 TGGACTTACACTTCGCCAGC 60.320 55.000 0.00 0.00 0.00 4.85
2050 2366 5.999205 TGGTGCATCCTTTTATTGTTGAT 57.001 34.783 0.00 0.00 37.07 2.57
2082 2398 6.683974 ACAGATTGATGGGAAAATTCTACG 57.316 37.500 0.00 0.00 0.00 3.51
2091 2407 5.661458 TGGGAAAATTCTACGATGAGACTC 58.339 41.667 0.00 0.00 0.00 3.36
2092 2408 5.051153 GGGAAAATTCTACGATGAGACTCC 58.949 45.833 0.00 0.00 0.00 3.85
2177 2493 8.143193 TGTTTAGGACAAATAACGAGTCAGTAA 58.857 33.333 0.00 0.00 34.69 2.24
2286 2604 8.712228 TGGATATAGCGATGACCTTATGATAT 57.288 34.615 0.00 0.00 0.00 1.63
2343 2661 3.249189 TTCAAGCTCCCACGCCCT 61.249 61.111 0.00 0.00 0.00 5.19
2516 2834 1.835927 AACTCCAGTCTCAGGCTGCC 61.836 60.000 11.65 11.65 32.93 4.85
2532 2850 2.409975 CTGCCAGTGGAAATGCAAAAG 58.590 47.619 15.20 0.00 32.58 2.27
2574 2892 5.872617 CACCATGAAGAATGAAATTGTGCAT 59.127 36.000 0.00 0.00 46.04 3.96
2592 2910 5.181811 TGTGCATGTCAGGAACTTATTTCTG 59.818 40.000 0.00 0.00 34.60 3.02
2667 2985 3.512033 TGTTTTTGTGGTGCTTGTACC 57.488 42.857 0.84 0.84 41.24 3.34
3037 3356 6.500684 TGCTGAAACATCAGTATCTTTTCC 57.499 37.500 7.59 0.00 39.76 3.13
3161 3480 0.611714 AGTACTTACCGGGTGCCAAG 59.388 55.000 10.66 8.29 0.00 3.61
3368 3687 4.304939 GCATCTCAGACGATGATCATGAA 58.695 43.478 14.30 0.00 42.63 2.57
3406 3725 5.925397 GCATCTCAGACGATGATTATCTTGT 59.075 40.000 11.83 0.00 42.63 3.16
3478 3797 5.981315 TCTTTGTAGTTTAGTGAACACCTCG 59.019 40.000 0.17 0.00 40.84 4.63
3492 3811 1.294780 CCTCGGAACTCTGCAAGCT 59.705 57.895 0.00 0.00 0.00 3.74
3525 3844 2.169832 TTTCTGAAGCCTCGGTTCTG 57.830 50.000 5.31 4.96 40.24 3.02
3804 4123 0.185901 TTTGAGCTTGCCTGGGACTT 59.814 50.000 0.00 0.00 0.00 3.01
3878 4198 1.389609 CCCAAGACCATGGCATCTGC 61.390 60.000 13.04 0.00 39.26 4.26
4000 4320 1.028330 ATCTGGCGTTGCATGTCCAG 61.028 55.000 17.62 17.62 45.59 3.86
4140 4795 8.654230 TTTATCTGAGTATGAAGCTTCATCAC 57.346 34.615 38.37 30.74 44.17 3.06
4145 4800 2.768253 ATGAAGCTTCATCACGGACA 57.232 45.000 31.78 8.55 44.17 4.02
4162 4817 0.538287 ACAGCCCAAACCTGAAGCTC 60.538 55.000 0.00 0.00 31.75 4.09
4205 4860 9.936759 GGATATTTCCTTCTATAACTTCTCCAG 57.063 37.037 0.00 0.00 39.14 3.86
4269 4926 5.832595 AGAGTCACTGTCTCATGCATACTAT 59.167 40.000 0.00 0.00 34.73 2.12
4287 4944 5.165961 ACTATAGATAAATGTGGCGCCAT 57.834 39.130 35.23 19.82 0.00 4.40
4412 5069 2.622942 TGTTTGTGGTTCTTCAGGCATC 59.377 45.455 0.00 0.00 0.00 3.91
4413 5070 2.622942 GTTTGTGGTTCTTCAGGCATCA 59.377 45.455 0.00 0.00 0.00 3.07
4424 5081 2.715046 TCAGGCATCATTCAACCAGAC 58.285 47.619 0.00 0.00 0.00 3.51
4480 5137 3.758554 TGGTAGAATCTGCAAAGCCTTTC 59.241 43.478 0.02 0.00 0.00 2.62
4486 5143 3.829886 TCTGCAAAGCCTTTCATTACG 57.170 42.857 0.00 0.00 0.00 3.18
4487 5144 2.487762 TCTGCAAAGCCTTTCATTACGG 59.512 45.455 0.00 0.00 0.00 4.02
4488 5145 1.067915 TGCAAAGCCTTTCATTACGGC 60.068 47.619 0.00 0.00 44.09 5.68
4489 5146 1.735700 GCAAAGCCTTTCATTACGGCC 60.736 52.381 0.00 0.00 44.84 6.13
4490 5147 1.135112 CAAAGCCTTTCATTACGGCCC 60.135 52.381 0.00 0.00 44.84 5.80
4491 5148 0.331616 AAGCCTTTCATTACGGCCCT 59.668 50.000 0.00 0.00 44.84 5.19
4492 5149 0.394352 AGCCTTTCATTACGGCCCTG 60.394 55.000 0.00 0.00 44.84 4.45
4493 5150 0.679960 GCCTTTCATTACGGCCCTGT 60.680 55.000 0.00 0.00 37.86 4.00
4494 5151 1.834188 CCTTTCATTACGGCCCTGTT 58.166 50.000 0.00 0.00 0.00 3.16
4495 5152 1.743394 CCTTTCATTACGGCCCTGTTC 59.257 52.381 0.00 0.00 0.00 3.18
4496 5153 1.396996 CTTTCATTACGGCCCTGTTCG 59.603 52.381 0.00 0.00 0.00 3.95
4497 5154 0.391927 TTCATTACGGCCCTGTTCGG 60.392 55.000 0.00 0.00 0.00 4.30
4498 5155 1.219664 CATTACGGCCCTGTTCGGA 59.780 57.895 0.00 0.00 33.16 4.55
4499 5156 0.810031 CATTACGGCCCTGTTCGGAG 60.810 60.000 0.00 0.00 33.16 4.63
4500 5157 1.968050 ATTACGGCCCTGTTCGGAGG 61.968 60.000 0.00 0.00 33.16 4.30
4503 5160 4.475135 GGCCCTGTTCGGAGGCTC 62.475 72.222 5.78 5.78 46.31 4.70
4504 5161 3.394836 GCCCTGTTCGGAGGCTCT 61.395 66.667 15.23 0.00 43.62 4.09
4505 5162 2.896443 CCCTGTTCGGAGGCTCTC 59.104 66.667 15.23 3.67 33.16 3.20
4506 5163 2.726351 CCCTGTTCGGAGGCTCTCC 61.726 68.421 15.23 10.35 46.44 3.71
4515 5172 2.907703 GAGGCTCTCCACTCCATGA 58.092 57.895 7.40 0.00 33.74 3.07
4516 5173 0.463620 GAGGCTCTCCACTCCATGAC 59.536 60.000 7.40 0.00 33.74 3.06
4517 5174 0.042431 AGGCTCTCCACTCCATGACT 59.958 55.000 0.00 0.00 33.74 3.41
4518 5175 0.463620 GGCTCTCCACTCCATGACTC 59.536 60.000 0.00 0.00 0.00 3.36
4519 5176 0.463620 GCTCTCCACTCCATGACTCC 59.536 60.000 0.00 0.00 0.00 3.85
4520 5177 0.743688 CTCTCCACTCCATGACTCCG 59.256 60.000 0.00 0.00 0.00 4.63
4521 5178 1.142748 CTCCACTCCATGACTCCGC 59.857 63.158 0.00 0.00 0.00 5.54
4522 5179 1.305297 TCCACTCCATGACTCCGCT 60.305 57.895 0.00 0.00 0.00 5.52
4523 5180 1.142748 CCACTCCATGACTCCGCTC 59.857 63.158 0.00 0.00 0.00 5.03
4524 5181 1.142748 CACTCCATGACTCCGCTCC 59.857 63.158 0.00 0.00 0.00 4.70
4525 5182 2.060980 ACTCCATGACTCCGCTCCC 61.061 63.158 0.00 0.00 0.00 4.30
4526 5183 3.144120 CTCCATGACTCCGCTCCCG 62.144 68.421 0.00 0.00 0.00 5.14
4549 5206 4.211986 GCCGGAGCCGTAATTGAA 57.788 55.556 5.05 0.00 37.81 2.69
4550 5207 2.473457 GCCGGAGCCGTAATTGAAA 58.527 52.632 5.05 0.00 37.81 2.69
4551 5208 0.806241 GCCGGAGCCGTAATTGAAAA 59.194 50.000 5.05 0.00 37.81 2.29
4552 5209 1.404035 GCCGGAGCCGTAATTGAAAAT 59.596 47.619 5.05 0.00 37.81 1.82
4553 5210 2.540973 GCCGGAGCCGTAATTGAAAATC 60.541 50.000 5.05 0.00 37.81 2.17
4554 5211 2.680841 CCGGAGCCGTAATTGAAAATCA 59.319 45.455 8.25 0.00 37.81 2.57
4555 5212 3.315191 CCGGAGCCGTAATTGAAAATCAT 59.685 43.478 8.25 0.00 37.81 2.45
4556 5213 4.282068 CGGAGCCGTAATTGAAAATCATG 58.718 43.478 0.00 0.00 34.35 3.07
4557 5214 4.610945 GGAGCCGTAATTGAAAATCATGG 58.389 43.478 0.00 0.00 0.00 3.66
4558 5215 4.338118 GGAGCCGTAATTGAAAATCATGGA 59.662 41.667 0.00 0.00 0.00 3.41
4559 5216 5.505173 AGCCGTAATTGAAAATCATGGAG 57.495 39.130 0.00 0.00 0.00 3.86
4560 5217 4.949856 AGCCGTAATTGAAAATCATGGAGT 59.050 37.500 0.00 0.00 0.00 3.85
4561 5218 5.036737 GCCGTAATTGAAAATCATGGAGTG 58.963 41.667 0.00 0.00 0.00 3.51
4562 5219 5.581605 CCGTAATTGAAAATCATGGAGTGG 58.418 41.667 0.00 0.00 0.00 4.00
4563 5220 5.450412 CCGTAATTGAAAATCATGGAGTGGG 60.450 44.000 0.00 0.00 0.00 4.61
4564 5221 4.476628 AATTGAAAATCATGGAGTGGGC 57.523 40.909 0.00 0.00 0.00 5.36
4565 5222 2.601240 TGAAAATCATGGAGTGGGCA 57.399 45.000 0.00 0.00 0.00 5.36
4566 5223 2.886913 TGAAAATCATGGAGTGGGCAA 58.113 42.857 0.00 0.00 0.00 4.52
4567 5224 3.237746 TGAAAATCATGGAGTGGGCAAA 58.762 40.909 0.00 0.00 0.00 3.68
4568 5225 3.258872 TGAAAATCATGGAGTGGGCAAAG 59.741 43.478 0.00 0.00 0.00 2.77
4569 5226 2.905415 AATCATGGAGTGGGCAAAGA 57.095 45.000 0.00 0.00 0.00 2.52
4570 5227 2.431954 ATCATGGAGTGGGCAAAGAG 57.568 50.000 0.00 0.00 0.00 2.85
4571 5228 0.329261 TCATGGAGTGGGCAAAGAGG 59.671 55.000 0.00 0.00 0.00 3.69
4572 5229 0.038744 CATGGAGTGGGCAAAGAGGT 59.961 55.000 0.00 0.00 0.00 3.85
4573 5230 1.281867 CATGGAGTGGGCAAAGAGGTA 59.718 52.381 0.00 0.00 0.00 3.08
4574 5231 0.690762 TGGAGTGGGCAAAGAGGTAC 59.309 55.000 0.00 0.00 0.00 3.34
4589 5246 2.679082 AGGTACTCCGCATATCCTTGT 58.321 47.619 0.00 0.00 39.05 3.16
4590 5247 3.840991 AGGTACTCCGCATATCCTTGTA 58.159 45.455 0.00 0.00 39.05 2.41
4591 5248 4.417437 AGGTACTCCGCATATCCTTGTAT 58.583 43.478 0.00 0.00 39.05 2.29
4592 5249 4.838986 AGGTACTCCGCATATCCTTGTATT 59.161 41.667 0.00 0.00 39.05 1.89
4593 5250 5.047235 AGGTACTCCGCATATCCTTGTATTC 60.047 44.000 0.00 0.00 39.05 1.75
4594 5251 5.047235 GGTACTCCGCATATCCTTGTATTCT 60.047 44.000 0.00 0.00 0.00 2.40
4595 5252 4.887748 ACTCCGCATATCCTTGTATTCTG 58.112 43.478 0.00 0.00 0.00 3.02
4596 5253 3.664107 TCCGCATATCCTTGTATTCTGC 58.336 45.455 0.00 0.00 0.00 4.26
4597 5254 3.712162 CGCATATCCTTGTATTCTGCG 57.288 47.619 0.00 0.00 43.82 5.18
4598 5255 2.413112 CGCATATCCTTGTATTCTGCGG 59.587 50.000 6.16 0.00 45.08 5.69
4599 5256 3.664107 GCATATCCTTGTATTCTGCGGA 58.336 45.455 0.00 0.00 0.00 5.54
4600 5257 3.681897 GCATATCCTTGTATTCTGCGGAG 59.318 47.826 0.00 0.00 0.00 4.63
4617 5274 2.433318 GCTGGTGGAGCTGTCGTC 60.433 66.667 0.00 0.00 45.21 4.20
4618 5275 2.262915 CTGGTGGAGCTGTCGTCC 59.737 66.667 0.00 0.00 34.31 4.79
4619 5276 2.203640 TGGTGGAGCTGTCGTCCT 60.204 61.111 0.00 0.00 34.86 3.85
4620 5277 0.965866 CTGGTGGAGCTGTCGTCCTA 60.966 60.000 0.00 0.00 34.86 2.94
4621 5278 1.248785 TGGTGGAGCTGTCGTCCTAC 61.249 60.000 0.00 0.00 34.86 3.18
4622 5279 1.248785 GGTGGAGCTGTCGTCCTACA 61.249 60.000 0.00 0.00 34.86 2.74
4623 5280 0.818296 GTGGAGCTGTCGTCCTACAT 59.182 55.000 0.00 0.00 34.86 2.29
4624 5281 2.022195 GTGGAGCTGTCGTCCTACATA 58.978 52.381 0.00 0.00 34.86 2.29
4625 5282 2.022195 TGGAGCTGTCGTCCTACATAC 58.978 52.381 0.00 0.00 34.86 2.39
4626 5283 2.022195 GGAGCTGTCGTCCTACATACA 58.978 52.381 0.00 0.00 0.00 2.29
4627 5284 2.033550 GGAGCTGTCGTCCTACATACAG 59.966 54.545 0.00 0.00 41.78 2.74
4628 5285 2.683867 GAGCTGTCGTCCTACATACAGT 59.316 50.000 0.00 0.00 41.11 3.55
4629 5286 3.090037 AGCTGTCGTCCTACATACAGTT 58.910 45.455 0.00 0.00 41.11 3.16
4630 5287 4.267536 AGCTGTCGTCCTACATACAGTTA 58.732 43.478 0.00 0.00 41.11 2.24
4631 5288 4.096081 AGCTGTCGTCCTACATACAGTTAC 59.904 45.833 0.00 0.00 41.11 2.50
4632 5289 4.732938 GCTGTCGTCCTACATACAGTTACC 60.733 50.000 0.00 0.00 41.11 2.85
4633 5290 3.374988 TGTCGTCCTACATACAGTTACCG 59.625 47.826 0.00 0.00 0.00 4.02
4634 5291 2.945008 TCGTCCTACATACAGTTACCGG 59.055 50.000 0.00 0.00 0.00 5.28
4635 5292 2.945008 CGTCCTACATACAGTTACCGGA 59.055 50.000 9.46 0.00 0.00 5.14
4636 5293 3.567164 CGTCCTACATACAGTTACCGGAT 59.433 47.826 9.46 0.00 0.00 4.18
4637 5294 4.037208 CGTCCTACATACAGTTACCGGATT 59.963 45.833 9.46 0.00 0.00 3.01
4638 5295 5.527033 GTCCTACATACAGTTACCGGATTC 58.473 45.833 9.46 0.00 0.00 2.52
4639 5296 4.586001 TCCTACATACAGTTACCGGATTCC 59.414 45.833 9.46 0.00 0.00 3.01
4640 5297 4.342951 CCTACATACAGTTACCGGATTCCA 59.657 45.833 9.46 0.00 0.00 3.53
4641 5298 5.011738 CCTACATACAGTTACCGGATTCCAT 59.988 44.000 9.46 0.00 0.00 3.41
4642 5299 5.367945 ACATACAGTTACCGGATTCCATT 57.632 39.130 9.46 0.00 0.00 3.16
4643 5300 5.123227 ACATACAGTTACCGGATTCCATTG 58.877 41.667 9.46 0.00 0.00 2.82
4644 5301 3.713826 ACAGTTACCGGATTCCATTGT 57.286 42.857 9.46 0.00 0.00 2.71
4645 5302 4.829872 ACAGTTACCGGATTCCATTGTA 57.170 40.909 9.46 0.00 0.00 2.41
4646 5303 5.367945 ACAGTTACCGGATTCCATTGTAT 57.632 39.130 9.46 0.00 0.00 2.29
4647 5304 6.488769 ACAGTTACCGGATTCCATTGTATA 57.511 37.500 9.46 0.00 0.00 1.47
4648 5305 7.074653 ACAGTTACCGGATTCCATTGTATAT 57.925 36.000 9.46 0.00 0.00 0.86
4649 5306 7.159372 ACAGTTACCGGATTCCATTGTATATC 58.841 38.462 9.46 0.00 0.00 1.63
4650 5307 7.016268 ACAGTTACCGGATTCCATTGTATATCT 59.984 37.037 9.46 0.00 0.00 1.98
4651 5308 7.878127 CAGTTACCGGATTCCATTGTATATCTT 59.122 37.037 9.46 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.256539 GCGAGTTATTGAGATTGATGAAGTCA 59.743 38.462 0.00 0.00 34.25 3.41
8 9 5.427378 TGGCGAGTTATTGAGATTGATGAA 58.573 37.500 0.00 0.00 0.00 2.57
10 11 5.295292 AGTTGGCGAGTTATTGAGATTGATG 59.705 40.000 0.00 0.00 0.00 3.07
11 12 5.431765 AGTTGGCGAGTTATTGAGATTGAT 58.568 37.500 0.00 0.00 0.00 2.57
12 13 4.832248 AGTTGGCGAGTTATTGAGATTGA 58.168 39.130 0.00 0.00 0.00 2.57
14 15 5.091261 AGAGTTGGCGAGTTATTGAGATT 57.909 39.130 0.00 0.00 0.00 2.40
15 16 4.744795 AGAGTTGGCGAGTTATTGAGAT 57.255 40.909 0.00 0.00 0.00 2.75
16 17 4.142227 GGTAGAGTTGGCGAGTTATTGAGA 60.142 45.833 0.00 0.00 0.00 3.27
17 18 4.113354 GGTAGAGTTGGCGAGTTATTGAG 58.887 47.826 0.00 0.00 0.00 3.02
18 19 3.512329 TGGTAGAGTTGGCGAGTTATTGA 59.488 43.478 0.00 0.00 0.00 2.57
19 20 3.857052 TGGTAGAGTTGGCGAGTTATTG 58.143 45.455 0.00 0.00 0.00 1.90
20 21 4.161565 TCATGGTAGAGTTGGCGAGTTATT 59.838 41.667 0.00 0.00 0.00 1.40
21 22 3.704566 TCATGGTAGAGTTGGCGAGTTAT 59.295 43.478 0.00 0.00 0.00 1.89
22 23 3.093814 TCATGGTAGAGTTGGCGAGTTA 58.906 45.455 0.00 0.00 0.00 2.24
23 24 1.899814 TCATGGTAGAGTTGGCGAGTT 59.100 47.619 0.00 0.00 0.00 3.01
24 25 1.557099 TCATGGTAGAGTTGGCGAGT 58.443 50.000 0.00 0.00 0.00 4.18
25 26 2.166459 TCTTCATGGTAGAGTTGGCGAG 59.834 50.000 0.00 0.00 0.00 5.03
26 27 2.176045 TCTTCATGGTAGAGTTGGCGA 58.824 47.619 0.00 0.00 0.00 5.54
27 28 2.672961 TCTTCATGGTAGAGTTGGCG 57.327 50.000 0.00 0.00 0.00 5.69
28 29 2.615912 GCATCTTCATGGTAGAGTTGGC 59.384 50.000 0.00 0.00 0.00 4.52
29 30 4.148128 AGCATCTTCATGGTAGAGTTGG 57.852 45.455 0.00 0.00 39.04 3.77
30 31 5.699915 CCATAGCATCTTCATGGTAGAGTTG 59.300 44.000 0.00 0.00 44.33 3.16
31 32 5.604231 TCCATAGCATCTTCATGGTAGAGTT 59.396 40.000 0.00 0.00 44.33 3.01
32 33 5.150715 TCCATAGCATCTTCATGGTAGAGT 58.849 41.667 0.00 0.00 44.33 3.24
33 34 5.735285 TCCATAGCATCTTCATGGTAGAG 57.265 43.478 0.00 0.00 44.33 2.43
34 35 6.382282 CCTATCCATAGCATCTTCATGGTAGA 59.618 42.308 0.00 0.00 44.33 2.59
35 36 6.407865 CCCTATCCATAGCATCTTCATGGTAG 60.408 46.154 0.00 0.00 44.33 3.18
36 37 5.426509 CCCTATCCATAGCATCTTCATGGTA 59.573 44.000 0.00 0.00 45.02 3.25
37 38 4.226846 CCCTATCCATAGCATCTTCATGGT 59.773 45.833 0.00 0.00 43.37 3.55
38 39 4.226846 ACCCTATCCATAGCATCTTCATGG 59.773 45.833 0.00 0.00 40.55 3.66
39 40 5.183969 CACCCTATCCATAGCATCTTCATG 58.816 45.833 0.00 0.00 0.00 3.07
40 41 4.848660 ACACCCTATCCATAGCATCTTCAT 59.151 41.667 0.00 0.00 0.00 2.57
41 42 4.040829 CACACCCTATCCATAGCATCTTCA 59.959 45.833 0.00 0.00 0.00 3.02
42 43 4.573900 CACACCCTATCCATAGCATCTTC 58.426 47.826 0.00 0.00 0.00 2.87
43 44 3.244700 GCACACCCTATCCATAGCATCTT 60.245 47.826 0.00 0.00 0.00 2.40
44 45 2.304180 GCACACCCTATCCATAGCATCT 59.696 50.000 0.00 0.00 0.00 2.90
45 46 2.038952 TGCACACCCTATCCATAGCATC 59.961 50.000 0.00 0.00 0.00 3.91
46 47 2.057140 TGCACACCCTATCCATAGCAT 58.943 47.619 0.00 0.00 0.00 3.79
47 48 1.506025 TGCACACCCTATCCATAGCA 58.494 50.000 0.00 0.00 0.00 3.49
48 49 2.430465 CATGCACACCCTATCCATAGC 58.570 52.381 0.00 0.00 0.00 2.97
49 50 2.224597 TGCATGCACACCCTATCCATAG 60.225 50.000 18.46 0.00 0.00 2.23
50 51 1.773653 TGCATGCACACCCTATCCATA 59.226 47.619 18.46 0.00 0.00 2.74
51 52 0.552363 TGCATGCACACCCTATCCAT 59.448 50.000 18.46 0.00 0.00 3.41
52 53 0.552363 ATGCATGCACACCCTATCCA 59.448 50.000 25.37 0.00 0.00 3.41
53 54 2.566833 TATGCATGCACACCCTATCC 57.433 50.000 25.37 0.00 0.00 2.59
54 55 3.678289 TCATATGCATGCACACCCTATC 58.322 45.455 25.37 0.00 31.73 2.08
55 56 3.793819 TCATATGCATGCACACCCTAT 57.206 42.857 25.37 13.70 31.73 2.57
56 57 3.574354 TTCATATGCATGCACACCCTA 57.426 42.857 25.37 11.74 31.73 3.53
57 58 2.440517 TTCATATGCATGCACACCCT 57.559 45.000 25.37 9.52 31.73 4.34
58 59 2.624364 TCATTCATATGCATGCACACCC 59.376 45.455 25.37 0.00 31.73 4.61
59 60 3.994204 TCATTCATATGCATGCACACC 57.006 42.857 25.37 0.00 31.73 4.16
68 69 3.675225 ACGTAGACGCATCATTCATATGC 59.325 43.478 1.14 0.00 45.03 3.14
69 70 4.917415 TCACGTAGACGCATCATTCATATG 59.083 41.667 1.14 0.00 44.43 1.78
70 71 5.121221 TCACGTAGACGCATCATTCATAT 57.879 39.130 1.14 0.00 44.43 1.78
71 72 4.036380 ACTCACGTAGACGCATCATTCATA 59.964 41.667 1.14 0.00 44.43 2.15
72 73 3.181486 ACTCACGTAGACGCATCATTCAT 60.181 43.478 1.14 0.00 44.43 2.57
73 74 2.163613 ACTCACGTAGACGCATCATTCA 59.836 45.455 1.14 0.00 44.43 2.57
74 75 2.798680 ACTCACGTAGACGCATCATTC 58.201 47.619 1.14 0.00 44.43 2.67
75 76 2.941453 ACTCACGTAGACGCATCATT 57.059 45.000 1.14 0.00 44.43 2.57
76 77 3.315470 ACATACTCACGTAGACGCATCAT 59.685 43.478 1.14 0.00 44.43 2.45
77 78 2.681344 ACATACTCACGTAGACGCATCA 59.319 45.455 1.14 0.00 44.43 3.07
78 79 3.036633 CACATACTCACGTAGACGCATC 58.963 50.000 1.14 0.00 44.43 3.91
79 80 2.422479 ACACATACTCACGTAGACGCAT 59.578 45.455 1.14 0.00 44.43 4.73
80 81 1.808343 ACACATACTCACGTAGACGCA 59.192 47.619 1.14 0.00 44.43 5.24
81 82 2.539346 ACACATACTCACGTAGACGC 57.461 50.000 1.14 0.00 44.43 5.19
82 83 5.213913 AGTTACACATACTCACGTAGACG 57.786 43.478 0.00 0.00 46.33 4.18
83 84 7.303998 AGAAAGTTACACATACTCACGTAGAC 58.696 38.462 0.00 0.00 0.00 2.59
84 85 7.444629 AGAAAGTTACACATACTCACGTAGA 57.555 36.000 0.00 0.00 0.00 2.59
85 86 7.806487 TCAAGAAAGTTACACATACTCACGTAG 59.194 37.037 0.00 0.00 0.00 3.51
86 87 7.650890 TCAAGAAAGTTACACATACTCACGTA 58.349 34.615 0.00 0.00 0.00 3.57
87 88 6.509656 TCAAGAAAGTTACACATACTCACGT 58.490 36.000 0.00 0.00 0.00 4.49
88 89 7.402811 TTCAAGAAAGTTACACATACTCACG 57.597 36.000 0.00 0.00 0.00 4.35
89 90 8.988934 TCATTCAAGAAAGTTACACATACTCAC 58.011 33.333 0.00 0.00 0.00 3.51
90 91 9.554395 TTCATTCAAGAAAGTTACACATACTCA 57.446 29.630 0.00 0.00 0.00 3.41
101 102 9.898152 TGGGTTTATTTTTCATTCAAGAAAGTT 57.102 25.926 0.00 0.00 38.60 2.66
102 103 9.898152 TTGGGTTTATTTTTCATTCAAGAAAGT 57.102 25.926 0.00 0.00 38.60 2.66
104 105 9.898152 AGTTGGGTTTATTTTTCATTCAAGAAA 57.102 25.926 0.00 0.00 35.82 2.52
105 106 9.541143 GAGTTGGGTTTATTTTTCATTCAAGAA 57.459 29.630 0.00 0.00 0.00 2.52
106 107 7.865385 CGAGTTGGGTTTATTTTTCATTCAAGA 59.135 33.333 0.00 0.00 0.00 3.02
107 108 7.865385 TCGAGTTGGGTTTATTTTTCATTCAAG 59.135 33.333 0.00 0.00 0.00 3.02
108 109 7.650104 GTCGAGTTGGGTTTATTTTTCATTCAA 59.350 33.333 0.00 0.00 0.00 2.69
109 110 7.142680 GTCGAGTTGGGTTTATTTTTCATTCA 58.857 34.615 0.00 0.00 0.00 2.57
110 111 7.142680 TGTCGAGTTGGGTTTATTTTTCATTC 58.857 34.615 0.00 0.00 0.00 2.67
111 112 7.045126 TGTCGAGTTGGGTTTATTTTTCATT 57.955 32.000 0.00 0.00 0.00 2.57
112 113 6.642707 TGTCGAGTTGGGTTTATTTTTCAT 57.357 33.333 0.00 0.00 0.00 2.57
113 114 6.452494 TTGTCGAGTTGGGTTTATTTTTCA 57.548 33.333 0.00 0.00 0.00 2.69
114 115 7.197703 TCTTTGTCGAGTTGGGTTTATTTTTC 58.802 34.615 0.00 0.00 0.00 2.29
115 116 7.102847 TCTTTGTCGAGTTGGGTTTATTTTT 57.897 32.000 0.00 0.00 0.00 1.94
116 117 6.702716 TCTTTGTCGAGTTGGGTTTATTTT 57.297 33.333 0.00 0.00 0.00 1.82
117 118 6.894339 ATCTTTGTCGAGTTGGGTTTATTT 57.106 33.333 0.00 0.00 0.00 1.40
118 119 6.488683 TCAATCTTTGTCGAGTTGGGTTTATT 59.511 34.615 0.00 0.00 0.00 1.40
119 120 6.001460 TCAATCTTTGTCGAGTTGGGTTTAT 58.999 36.000 0.00 0.00 0.00 1.40
120 121 5.237779 GTCAATCTTTGTCGAGTTGGGTTTA 59.762 40.000 0.00 0.00 0.00 2.01
121 122 4.036380 GTCAATCTTTGTCGAGTTGGGTTT 59.964 41.667 0.00 0.00 0.00 3.27
122 123 3.564225 GTCAATCTTTGTCGAGTTGGGTT 59.436 43.478 0.00 0.00 0.00 4.11
123 124 3.139077 GTCAATCTTTGTCGAGTTGGGT 58.861 45.455 0.00 0.00 0.00 4.51
124 125 3.138304 TGTCAATCTTTGTCGAGTTGGG 58.862 45.455 0.00 0.00 0.00 4.12
125 126 4.058124 TCTGTCAATCTTTGTCGAGTTGG 58.942 43.478 0.00 0.00 0.00 3.77
126 127 5.852738 ATCTGTCAATCTTTGTCGAGTTG 57.147 39.130 0.00 0.00 0.00 3.16
127 128 6.071334 TCCTATCTGTCAATCTTTGTCGAGTT 60.071 38.462 0.00 0.00 0.00 3.01
128 129 5.419155 TCCTATCTGTCAATCTTTGTCGAGT 59.581 40.000 0.00 0.00 0.00 4.18
129 130 5.895928 TCCTATCTGTCAATCTTTGTCGAG 58.104 41.667 0.00 0.00 0.00 4.04
130 131 5.914898 TCCTATCTGTCAATCTTTGTCGA 57.085 39.130 0.00 0.00 0.00 4.20
131 132 6.102663 ACTTCCTATCTGTCAATCTTTGTCG 58.897 40.000 0.00 0.00 0.00 4.35
132 133 7.223777 GCTACTTCCTATCTGTCAATCTTTGTC 59.776 40.741 0.00 0.00 0.00 3.18
133 134 7.044798 GCTACTTCCTATCTGTCAATCTTTGT 58.955 38.462 0.00 0.00 0.00 2.83
134 135 7.044181 TGCTACTTCCTATCTGTCAATCTTTG 58.956 38.462 0.00 0.00 0.00 2.77
135 136 7.187824 TGCTACTTCCTATCTGTCAATCTTT 57.812 36.000 0.00 0.00 0.00 2.52
136 137 6.183360 CCTGCTACTTCCTATCTGTCAATCTT 60.183 42.308 0.00 0.00 0.00 2.40
137 138 5.304101 CCTGCTACTTCCTATCTGTCAATCT 59.696 44.000 0.00 0.00 0.00 2.40
138 139 5.303078 TCCTGCTACTTCCTATCTGTCAATC 59.697 44.000 0.00 0.00 0.00 2.67
139 140 5.211973 TCCTGCTACTTCCTATCTGTCAAT 58.788 41.667 0.00 0.00 0.00 2.57
140 141 4.610333 TCCTGCTACTTCCTATCTGTCAA 58.390 43.478 0.00 0.00 0.00 3.18
141 142 4.251103 TCCTGCTACTTCCTATCTGTCA 57.749 45.455 0.00 0.00 0.00 3.58
142 143 5.510520 CCAATCCTGCTACTTCCTATCTGTC 60.511 48.000 0.00 0.00 0.00 3.51
143 144 4.346418 CCAATCCTGCTACTTCCTATCTGT 59.654 45.833 0.00 0.00 0.00 3.41
144 145 4.590647 TCCAATCCTGCTACTTCCTATCTG 59.409 45.833 0.00 0.00 0.00 2.90
145 146 4.591072 GTCCAATCCTGCTACTTCCTATCT 59.409 45.833 0.00 0.00 0.00 1.98
146 147 4.559704 CGTCCAATCCTGCTACTTCCTATC 60.560 50.000 0.00 0.00 0.00 2.08
147 148 3.322254 CGTCCAATCCTGCTACTTCCTAT 59.678 47.826 0.00 0.00 0.00 2.57
148 149 2.693591 CGTCCAATCCTGCTACTTCCTA 59.306 50.000 0.00 0.00 0.00 2.94
149 150 1.482593 CGTCCAATCCTGCTACTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
150 151 1.480954 TCGTCCAATCCTGCTACTTCC 59.519 52.381 0.00 0.00 0.00 3.46
151 152 2.427453 TCTCGTCCAATCCTGCTACTTC 59.573 50.000 0.00 0.00 0.00 3.01
152 153 2.457598 TCTCGTCCAATCCTGCTACTT 58.542 47.619 0.00 0.00 0.00 2.24
153 154 2.145397 TCTCGTCCAATCCTGCTACT 57.855 50.000 0.00 0.00 0.00 2.57
154 155 3.126831 CAATCTCGTCCAATCCTGCTAC 58.873 50.000 0.00 0.00 0.00 3.58
155 156 3.031013 TCAATCTCGTCCAATCCTGCTA 58.969 45.455 0.00 0.00 0.00 3.49
156 157 1.833630 TCAATCTCGTCCAATCCTGCT 59.166 47.619 0.00 0.00 0.00 4.24
157 158 2.315925 TCAATCTCGTCCAATCCTGC 57.684 50.000 0.00 0.00 0.00 4.85
158 159 7.154656 TGTATATTCAATCTCGTCCAATCCTG 58.845 38.462 0.00 0.00 0.00 3.86
159 160 7.303182 TGTATATTCAATCTCGTCCAATCCT 57.697 36.000 0.00 0.00 0.00 3.24
160 161 7.441157 TGTTGTATATTCAATCTCGTCCAATCC 59.559 37.037 0.00 0.00 0.00 3.01
161 162 8.365399 TGTTGTATATTCAATCTCGTCCAATC 57.635 34.615 0.00 0.00 0.00 2.67
162 163 8.777413 CATGTTGTATATTCAATCTCGTCCAAT 58.223 33.333 0.00 0.00 0.00 3.16
163 164 7.768582 ACATGTTGTATATTCAATCTCGTCCAA 59.231 33.333 0.00 0.00 0.00 3.53
164 165 7.272244 ACATGTTGTATATTCAATCTCGTCCA 58.728 34.615 0.00 0.00 0.00 4.02
165 166 7.715265 ACATGTTGTATATTCAATCTCGTCC 57.285 36.000 0.00 0.00 0.00 4.79
191 192 5.061179 GTGGCTAACAAAAGAGACAAGGTA 58.939 41.667 0.00 0.00 30.76 3.08
237 238 4.420168 CTTTCTTGAAAACAAAGCCGTCA 58.580 39.130 0.00 0.00 0.00 4.35
258 259 2.090324 TCATGTCCTCATCATCCTCCCT 60.090 50.000 0.00 0.00 31.15 4.20
544 546 3.196469 TCTCTGCAGTCCGAATCTGAATT 59.804 43.478 14.67 0.00 35.20 2.17
563 565 3.368236 GCGTTTTGAGTCAGGTATGTCTC 59.632 47.826 0.00 0.00 40.65 3.36
589 591 7.894376 ATTCGAAGTCCGTATGAAAAAGTTA 57.106 32.000 3.35 0.00 39.75 2.24
705 707 2.417933 GCAGCGTCAGATTGTTTCATCT 59.582 45.455 0.00 0.00 0.00 2.90
708 710 1.532437 CTGCAGCGTCAGATTGTTTCA 59.468 47.619 0.00 0.00 36.19 2.69
795 797 6.499106 ACAAAACTCTTTTCAAATCCCCAT 57.501 33.333 0.00 0.00 0.00 4.00
823 825 2.561478 ACCGCCATTACACAAAGAGT 57.439 45.000 0.00 0.00 0.00 3.24
1158 1463 0.673985 TAGAATCGACAGCCATCGGG 59.326 55.000 7.31 0.00 42.50 5.14
1291 1596 1.226802 CGATCTGGACACCTCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
1301 1606 2.655073 TTGAAGGCGGCGATCTGGA 61.655 57.895 12.98 0.00 0.00 3.86
1340 1645 5.784390 AGTATATCCTGTAGTCCCTCTCGTA 59.216 44.000 0.00 0.00 0.00 3.43
1672 1988 2.426522 TGGTGTGCACTATGAAAGAGC 58.573 47.619 19.41 5.09 41.70 4.09
1708 2024 8.741841 GGGACTATAGTACTTAGCCTAATCAAG 58.258 40.741 14.87 0.00 0.00 3.02
1725 2041 8.097662 GGATCCTCAACTAATTTGGGACTATAG 58.902 40.741 3.84 0.00 38.03 1.31
1777 2093 8.717717 TCAATCACCTGACAGGATAAATCTAAT 58.282 33.333 28.56 0.00 37.67 1.73
1786 2102 3.033909 TCGATCAATCACCTGACAGGAT 58.966 45.455 28.56 9.67 37.67 3.24
1894 2210 2.659428 GAAGCTTGTAATGGCCCATCT 58.341 47.619 2.10 0.00 0.00 2.90
1984 2300 0.319211 TGGCGAAGTGTAAGTCCACG 60.319 55.000 0.00 0.00 40.33 4.94
2005 2321 3.194968 ACTCACCTGTAACATAGGGAACG 59.805 47.826 0.00 0.00 39.71 3.95
2065 2381 6.049149 GTCTCATCGTAGAATTTTCCCATCA 58.951 40.000 0.00 0.00 43.58 3.07
2082 2398 4.839668 AGTAACTATGCGGAGTCTCATC 57.160 45.455 1.47 0.00 0.00 2.92
2128 2444 5.241403 TGAGAAATTCTGGCTAAGTGGAA 57.759 39.130 0.00 0.00 0.00 3.53
2177 2493 8.204160 TCATTAGTGGATCTCGTAATCACAAAT 58.796 33.333 0.00 0.00 0.00 2.32
2225 2543 2.951642 GCTAATTTGCTAGACCATGGCA 59.048 45.455 13.04 0.00 44.70 4.92
2286 2604 9.513906 TTTTTCTATCACACCACAAATAGATGA 57.486 29.630 0.00 0.00 32.38 2.92
2343 2661 1.039068 CACCACCAATGCAAAGGACA 58.961 50.000 14.09 0.00 0.00 4.02
2516 2834 7.271223 CGAGTATTAACTTTTGCATTTCCACTG 59.729 37.037 0.00 0.00 35.56 3.66
2532 2850 3.991773 TGGTGCAGTGAACGAGTATTAAC 59.008 43.478 0.00 0.00 0.00 2.01
2609 2927 2.717639 AGTGTGAGGACAAAGTTGCT 57.282 45.000 0.00 0.00 32.49 3.91
2717 3035 8.928270 ACTTTACTACAGGATTCAGATTAACG 57.072 34.615 0.00 0.00 0.00 3.18
3037 3356 1.402720 CGCTGTTACATGCAAAAGGGG 60.403 52.381 5.21 0.00 0.00 4.79
3161 3480 4.608948 AAAGTCATCGATGGATAGGTCC 57.391 45.455 24.61 3.89 45.31 4.46
3303 3622 2.073252 TCGTCTGAGATGCCACCTAT 57.927 50.000 0.00 0.00 0.00 2.57
3368 3687 3.311990 TGAGATGCCACCTACATCATCT 58.688 45.455 6.53 3.55 45.19 2.90
3406 3725 1.001974 AGTCCAGCACGCAAATCTACA 59.998 47.619 0.00 0.00 0.00 2.74
3478 3797 3.118542 CAACAAAAGCTTGCAGAGTTCC 58.881 45.455 0.00 0.00 35.84 3.62
3492 3811 4.034279 GCTTCAGAAATGCTTGCAACAAAA 59.966 37.500 0.00 0.00 0.00 2.44
3503 3822 1.131315 GAACCGAGGCTTCAGAAATGC 59.869 52.381 0.00 0.00 0.00 3.56
3525 3844 1.957877 CGATCAGGTCCTCTAGGTTCC 59.042 57.143 0.00 0.98 36.34 3.62
3656 3975 3.342377 TCAGTAATCCATCCGCAAACA 57.658 42.857 0.00 0.00 0.00 2.83
3741 4060 1.278238 GCAACTCCACGACGATTAGG 58.722 55.000 0.00 0.00 0.00 2.69
3771 4090 3.321497 AGCTCAAAGAGTAAACGCTCAG 58.679 45.455 0.00 0.00 37.94 3.35
3783 4102 0.250901 GTCCCAGGCAAGCTCAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
3804 4123 1.351017 CCACAAAGGTTCCAGAGCCTA 59.649 52.381 3.24 0.00 41.43 3.93
3810 4129 2.779506 GGTAGTCCACAAAGGTTCCAG 58.220 52.381 0.00 0.00 39.02 3.86
3860 4180 1.721664 CGCAGATGCCATGGTCTTGG 61.722 60.000 14.67 2.01 39.94 3.61
3878 4198 1.258982 GGCATAATGACTCGTGCTTCG 59.741 52.381 0.00 0.00 37.70 3.79
4039 4361 6.312399 TGTTGACATTCACATGGAAACTAC 57.688 37.500 0.00 3.33 39.39 2.73
4046 4368 2.231721 TGCCATGTTGACATTCACATGG 59.768 45.455 24.51 24.51 46.61 3.66
4140 4795 1.228124 TTCAGGTTTGGGCTGTCCG 60.228 57.895 0.00 0.00 38.76 4.79
4145 4800 0.037447 GAGAGCTTCAGGTTTGGGCT 59.963 55.000 0.00 0.00 36.83 5.19
4162 4817 3.972950 ATCCGTCTCACGTATGAAGAG 57.027 47.619 0.00 0.00 40.58 2.85
4225 4880 7.926555 TGACTCTTCACTAAGAAACTAACCTTG 59.073 37.037 0.00 0.00 41.19 3.61
4287 4944 5.596361 TGAAGGTGATACTTTCAAGGCAAAA 59.404 36.000 4.33 0.00 40.53 2.44
4412 5069 7.500720 TGCTAATGATATGTCTGGTTGAATG 57.499 36.000 0.00 0.00 0.00 2.67
4413 5070 8.701908 AATGCTAATGATATGTCTGGTTGAAT 57.298 30.769 0.00 0.00 0.00 2.57
4424 5081 5.242171 TGGGCACTGAAATGCTAATGATATG 59.758 40.000 0.00 0.00 45.38 1.78
4480 5137 0.810031 CTCCGAACAGGGCCGTAATG 60.810 60.000 0.00 0.00 41.52 1.90
4486 5143 4.475135 GAGCCTCCGAACAGGGCC 62.475 72.222 0.00 0.00 46.31 5.80
4487 5144 3.378399 GAGAGCCTCCGAACAGGGC 62.378 68.421 0.00 0.00 45.57 5.19
4488 5145 2.726351 GGAGAGCCTCCGAACAGGG 61.726 68.421 5.60 0.00 41.08 4.45
4489 5146 2.896443 GGAGAGCCTCCGAACAGG 59.104 66.667 5.60 0.00 41.08 4.00
4497 5154 0.463620 GTCATGGAGTGGAGAGCCTC 59.536 60.000 0.00 0.00 34.31 4.70
4498 5155 0.042431 AGTCATGGAGTGGAGAGCCT 59.958 55.000 0.00 0.00 34.31 4.58
4499 5156 0.463620 GAGTCATGGAGTGGAGAGCC 59.536 60.000 0.00 0.00 0.00 4.70
4500 5157 0.463620 GGAGTCATGGAGTGGAGAGC 59.536 60.000 0.00 0.00 0.00 4.09
4501 5158 0.743688 CGGAGTCATGGAGTGGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
4502 5159 1.323271 GCGGAGTCATGGAGTGGAGA 61.323 60.000 0.00 0.00 0.00 3.71
4503 5160 1.142748 GCGGAGTCATGGAGTGGAG 59.857 63.158 0.00 0.00 0.00 3.86
4504 5161 1.305297 AGCGGAGTCATGGAGTGGA 60.305 57.895 0.00 0.00 0.00 4.02
4505 5162 1.142748 GAGCGGAGTCATGGAGTGG 59.857 63.158 0.00 0.00 0.00 4.00
4506 5163 1.142748 GGAGCGGAGTCATGGAGTG 59.857 63.158 0.00 0.00 0.00 3.51
4507 5164 2.060980 GGGAGCGGAGTCATGGAGT 61.061 63.158 0.00 0.00 0.00 3.85
4508 5165 2.818132 GGGAGCGGAGTCATGGAG 59.182 66.667 0.00 0.00 0.00 3.86
4509 5166 3.147595 CGGGAGCGGAGTCATGGA 61.148 66.667 0.00 0.00 0.00 3.41
4510 5167 4.227134 CCGGGAGCGGAGTCATGG 62.227 72.222 0.00 0.00 0.00 3.66
4511 5168 3.147595 TCCGGGAGCGGAGTCATG 61.148 66.667 0.00 0.00 33.62 3.07
4532 5189 0.806241 TTTTCAATTACGGCTCCGGC 59.194 50.000 13.31 0.00 44.69 6.13
4533 5190 2.680841 TGATTTTCAATTACGGCTCCGG 59.319 45.455 13.31 0.00 44.69 5.14
4534 5191 4.282068 CATGATTTTCAATTACGGCTCCG 58.718 43.478 6.79 6.79 46.03 4.63
4535 5192 4.338118 TCCATGATTTTCAATTACGGCTCC 59.662 41.667 0.00 0.00 0.00 4.70
4536 5193 5.066505 ACTCCATGATTTTCAATTACGGCTC 59.933 40.000 0.00 0.00 0.00 4.70
4537 5194 4.949856 ACTCCATGATTTTCAATTACGGCT 59.050 37.500 0.00 0.00 0.00 5.52
4538 5195 5.036737 CACTCCATGATTTTCAATTACGGC 58.963 41.667 0.00 0.00 0.00 5.68
4539 5196 5.450412 CCCACTCCATGATTTTCAATTACGG 60.450 44.000 0.00 0.00 0.00 4.02
4540 5197 5.581605 CCCACTCCATGATTTTCAATTACG 58.418 41.667 0.00 0.00 0.00 3.18
4541 5198 5.105392 TGCCCACTCCATGATTTTCAATTAC 60.105 40.000 0.00 0.00 0.00 1.89
4542 5199 5.022122 TGCCCACTCCATGATTTTCAATTA 58.978 37.500 0.00 0.00 0.00 1.40
4543 5200 3.839490 TGCCCACTCCATGATTTTCAATT 59.161 39.130 0.00 0.00 0.00 2.32
4544 5201 3.443052 TGCCCACTCCATGATTTTCAAT 58.557 40.909 0.00 0.00 0.00 2.57
4545 5202 2.886913 TGCCCACTCCATGATTTTCAA 58.113 42.857 0.00 0.00 0.00 2.69
4546 5203 2.601240 TGCCCACTCCATGATTTTCA 57.399 45.000 0.00 0.00 0.00 2.69
4547 5204 3.511146 TCTTTGCCCACTCCATGATTTTC 59.489 43.478 0.00 0.00 0.00 2.29
4548 5205 3.509442 TCTTTGCCCACTCCATGATTTT 58.491 40.909 0.00 0.00 0.00 1.82
4549 5206 3.094572 CTCTTTGCCCACTCCATGATTT 58.905 45.455 0.00 0.00 0.00 2.17
4550 5207 2.622452 CCTCTTTGCCCACTCCATGATT 60.622 50.000 0.00 0.00 0.00 2.57
4551 5208 1.064166 CCTCTTTGCCCACTCCATGAT 60.064 52.381 0.00 0.00 0.00 2.45
4552 5209 0.329261 CCTCTTTGCCCACTCCATGA 59.671 55.000 0.00 0.00 0.00 3.07
4553 5210 0.038744 ACCTCTTTGCCCACTCCATG 59.961 55.000 0.00 0.00 0.00 3.66
4554 5211 1.282157 GTACCTCTTTGCCCACTCCAT 59.718 52.381 0.00 0.00 0.00 3.41
4555 5212 0.690762 GTACCTCTTTGCCCACTCCA 59.309 55.000 0.00 0.00 0.00 3.86
4556 5213 0.984995 AGTACCTCTTTGCCCACTCC 59.015 55.000 0.00 0.00 0.00 3.85
4557 5214 1.066071 GGAGTACCTCTTTGCCCACTC 60.066 57.143 0.00 0.00 33.31 3.51
4558 5215 0.984995 GGAGTACCTCTTTGCCCACT 59.015 55.000 0.00 0.00 0.00 4.00
4559 5216 0.391263 CGGAGTACCTCTTTGCCCAC 60.391 60.000 0.00 0.00 0.00 4.61
4560 5217 1.980052 CGGAGTACCTCTTTGCCCA 59.020 57.895 0.00 0.00 0.00 5.36
4561 5218 1.449778 GCGGAGTACCTCTTTGCCC 60.450 63.158 0.00 0.00 0.00 5.36
4562 5219 0.107654 ATGCGGAGTACCTCTTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
4563 5220 2.596904 TATGCGGAGTACCTCTTTGC 57.403 50.000 0.00 0.00 0.00 3.68
4564 5221 3.322254 AGGATATGCGGAGTACCTCTTTG 59.678 47.826 0.00 0.00 0.00 2.77
4565 5222 3.577919 AGGATATGCGGAGTACCTCTTT 58.422 45.455 0.00 0.00 0.00 2.52
4566 5223 3.246416 AGGATATGCGGAGTACCTCTT 57.754 47.619 0.00 0.00 0.00 2.85
4567 5224 2.894126 CAAGGATATGCGGAGTACCTCT 59.106 50.000 0.00 0.00 0.00 3.69
4568 5225 2.628657 ACAAGGATATGCGGAGTACCTC 59.371 50.000 0.00 0.00 0.00 3.85
4569 5226 2.679082 ACAAGGATATGCGGAGTACCT 58.321 47.619 0.00 0.00 0.00 3.08
4570 5227 4.803098 ATACAAGGATATGCGGAGTACC 57.197 45.455 0.00 0.00 0.00 3.34
4571 5228 5.864474 CAGAATACAAGGATATGCGGAGTAC 59.136 44.000 0.00 0.00 0.00 2.73
4572 5229 5.566826 GCAGAATACAAGGATATGCGGAGTA 60.567 44.000 0.00 0.00 0.00 2.59
4573 5230 4.800914 GCAGAATACAAGGATATGCGGAGT 60.801 45.833 0.00 0.00 0.00 3.85
4574 5231 3.681897 GCAGAATACAAGGATATGCGGAG 59.318 47.826 0.00 0.00 0.00 4.63
4575 5232 3.664107 GCAGAATACAAGGATATGCGGA 58.336 45.455 0.00 0.00 0.00 5.54
4578 5235 3.664107 TCCGCAGAATACAAGGATATGC 58.336 45.455 0.00 0.00 0.00 3.14
4579 5236 3.681897 GCTCCGCAGAATACAAGGATATG 59.318 47.826 0.00 0.00 0.00 1.78
4580 5237 3.580458 AGCTCCGCAGAATACAAGGATAT 59.420 43.478 0.00 0.00 0.00 1.63
4581 5238 2.965831 AGCTCCGCAGAATACAAGGATA 59.034 45.455 0.00 0.00 0.00 2.59
4582 5239 1.765314 AGCTCCGCAGAATACAAGGAT 59.235 47.619 0.00 0.00 0.00 3.24
4583 5240 1.134699 CAGCTCCGCAGAATACAAGGA 60.135 52.381 0.00 0.00 0.00 3.36
4584 5241 1.293924 CAGCTCCGCAGAATACAAGG 58.706 55.000 0.00 0.00 0.00 3.61
4585 5242 1.293924 CCAGCTCCGCAGAATACAAG 58.706 55.000 0.00 0.00 0.00 3.16
4586 5243 0.613260 ACCAGCTCCGCAGAATACAA 59.387 50.000 0.00 0.00 0.00 2.41
4587 5244 0.108186 CACCAGCTCCGCAGAATACA 60.108 55.000 0.00 0.00 0.00 2.29
4588 5245 0.811616 CCACCAGCTCCGCAGAATAC 60.812 60.000 0.00 0.00 0.00 1.89
4589 5246 0.975556 TCCACCAGCTCCGCAGAATA 60.976 55.000 0.00 0.00 0.00 1.75
4590 5247 2.249413 CTCCACCAGCTCCGCAGAAT 62.249 60.000 0.00 0.00 0.00 2.40
4591 5248 2.922503 TCCACCAGCTCCGCAGAA 60.923 61.111 0.00 0.00 0.00 3.02
4592 5249 3.385384 CTCCACCAGCTCCGCAGA 61.385 66.667 0.00 0.00 0.00 4.26
4601 5258 0.965866 TAGGACGACAGCTCCACCAG 60.966 60.000 0.00 0.00 0.00 4.00
4602 5259 1.076014 TAGGACGACAGCTCCACCA 59.924 57.895 0.00 0.00 0.00 4.17
4603 5260 1.248785 TGTAGGACGACAGCTCCACC 61.249 60.000 0.00 0.00 0.00 4.61
4604 5261 0.818296 ATGTAGGACGACAGCTCCAC 59.182 55.000 0.00 0.00 31.51 4.02
4605 5262 2.022195 GTATGTAGGACGACAGCTCCA 58.978 52.381 0.00 0.00 31.51 3.86
4606 5263 2.022195 TGTATGTAGGACGACAGCTCC 58.978 52.381 0.00 0.00 31.51 4.70
4607 5264 2.683867 ACTGTATGTAGGACGACAGCTC 59.316 50.000 9.98 0.00 37.87 4.09
4608 5265 2.724454 ACTGTATGTAGGACGACAGCT 58.276 47.619 9.98 0.00 37.87 4.24
4609 5266 3.505464 AACTGTATGTAGGACGACAGC 57.495 47.619 9.98 0.00 37.87 4.40
4610 5267 4.495349 CGGTAACTGTATGTAGGACGACAG 60.495 50.000 8.95 8.95 39.30 3.51
4611 5268 3.374988 CGGTAACTGTATGTAGGACGACA 59.625 47.826 0.00 0.00 0.00 4.35
4612 5269 3.242870 CCGGTAACTGTATGTAGGACGAC 60.243 52.174 0.00 0.00 0.00 4.34
4613 5270 2.945008 CCGGTAACTGTATGTAGGACGA 59.055 50.000 0.00 0.00 0.00 4.20
4614 5271 2.945008 TCCGGTAACTGTATGTAGGACG 59.055 50.000 0.00 0.00 0.00 4.79
4615 5272 5.508657 GGAATCCGGTAACTGTATGTAGGAC 60.509 48.000 0.00 0.00 0.00 3.85
4616 5273 4.586001 GGAATCCGGTAACTGTATGTAGGA 59.414 45.833 0.00 0.00 0.00 2.94
4617 5274 4.342951 TGGAATCCGGTAACTGTATGTAGG 59.657 45.833 0.00 0.00 0.00 3.18
4618 5275 5.524971 TGGAATCCGGTAACTGTATGTAG 57.475 43.478 0.00 0.00 0.00 2.74
4619 5276 6.126997 ACAATGGAATCCGGTAACTGTATGTA 60.127 38.462 0.00 0.00 0.00 2.29
4620 5277 5.123227 CAATGGAATCCGGTAACTGTATGT 58.877 41.667 0.00 0.00 0.00 2.29
4621 5278 5.123227 ACAATGGAATCCGGTAACTGTATG 58.877 41.667 0.00 0.00 0.00 2.39
4622 5279 5.367945 ACAATGGAATCCGGTAACTGTAT 57.632 39.130 0.00 0.00 0.00 2.29
4623 5280 4.829872 ACAATGGAATCCGGTAACTGTA 57.170 40.909 0.00 0.00 0.00 2.74
4624 5281 3.713826 ACAATGGAATCCGGTAACTGT 57.286 42.857 0.00 0.00 0.00 3.55
4625 5282 7.386851 AGATATACAATGGAATCCGGTAACTG 58.613 38.462 0.00 0.00 0.00 3.16
4626 5283 7.554959 AGATATACAATGGAATCCGGTAACT 57.445 36.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.