Multiple sequence alignment - TraesCS6D01G142300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G142300 chr6D 100.000 1983 0 0 898 2880 112435026 112433044 0.000000e+00 3663.0
1 TraesCS6D01G142300 chr6D 100.000 541 0 0 1 541 112435923 112435383 0.000000e+00 1000.0
2 TraesCS6D01G142300 chr6A 91.075 1647 67 19 1230 2869 137380853 137379280 0.000000e+00 2154.0
3 TraesCS6D01G142300 chr6A 90.029 341 14 12 220 541 137381566 137381227 9.540000e-115 424.0
4 TraesCS6D01G142300 chr6A 94.643 168 7 2 982 1148 137381155 137380989 2.850000e-65 259.0
5 TraesCS6D01G142300 chr6A 87.218 133 16 1 2307 2438 411770275 411770407 1.790000e-32 150.0
6 TraesCS6D01G142300 chr6B 94.396 910 24 10 1270 2177 201413200 201412316 0.000000e+00 1373.0
7 TraesCS6D01G142300 chr6B 92.966 654 34 6 2225 2878 201412224 201411583 0.000000e+00 942.0
8 TraesCS6D01G142300 chr6B 92.593 297 11 6 255 541 201413862 201413567 1.600000e-112 416.0
9 TraesCS6D01G142300 chr6B 95.798 238 9 1 911 1148 201413538 201413302 1.620000e-102 383.0
10 TraesCS6D01G142300 chr6B 94.792 96 5 0 146 241 201414811 201414716 1.790000e-32 150.0
11 TraesCS6D01G142300 chr5B 84.967 153 20 2 2287 2438 503219626 503219476 4.970000e-33 152.0
12 TraesCS6D01G142300 chr4B 86.429 140 18 1 2298 2436 482660590 482660729 4.970000e-33 152.0
13 TraesCS6D01G142300 chr4B 91.045 67 6 0 1187 1253 498537588 498537654 1.100000e-14 91.6
14 TraesCS6D01G142300 chr4B 92.683 41 3 0 1725 1765 398111640 398111680 3.100000e-05 60.2
15 TraesCS6D01G142300 chr4B 92.683 41 3 0 1725 1765 398119205 398119245 3.100000e-05 60.2
16 TraesCS6D01G142300 chr4B 92.683 41 3 0 1725 1765 398154237 398154277 3.100000e-05 60.2
17 TraesCS6D01G142300 chr4B 92.683 41 3 0 1725 1765 398188999 398189039 3.100000e-05 60.2
18 TraesCS6D01G142300 chr4A 86.429 140 18 1 2298 2436 565304107 565304246 4.970000e-33 152.0
19 TraesCS6D01G142300 chr5D 84.314 153 21 2 2287 2438 416418563 416418413 2.310000e-31 147.0
20 TraesCS6D01G142300 chr5D 91.045 67 6 0 1187 1253 411741646 411741580 1.100000e-14 91.6
21 TraesCS6D01G142300 chr5D 88.000 75 7 2 1187 1260 450211024 450211097 1.420000e-13 87.9
22 TraesCS6D01G142300 chr4D 85.714 140 19 1 2298 2436 392743359 392743498 2.310000e-31 147.0
23 TraesCS6D01G142300 chr7D 85.714 140 17 2 2298 2436 192371482 192371619 8.320000e-31 145.0
24 TraesCS6D01G142300 chr7D 90.278 72 7 0 1185 1256 94510496 94510425 8.500000e-16 95.3
25 TraesCS6D01G142300 chr7D 94.828 58 3 0 1196 1253 59993021 59992964 1.100000e-14 91.6
26 TraesCS6D01G142300 chr2D 94.203 69 4 0 1185 1253 311551670 311551738 3.920000e-19 106.0
27 TraesCS6D01G142300 chr7A 92.537 67 5 0 1187 1253 594577311 594577377 2.360000e-16 97.1
28 TraesCS6D01G142300 chr7A 91.045 67 6 0 1187 1253 216278212 216278146 1.100000e-14 91.6
29 TraesCS6D01G142300 chr1D 90.541 74 5 1 1185 1256 41825967 41825894 2.360000e-16 97.1
30 TraesCS6D01G142300 chr1B 97.297 37 1 0 2191 2227 622626036 622626072 2.400000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G142300 chr6D 112433044 112435923 2879 True 2331.500000 3663 100.000000 1 2880 2 chr6D.!!$R1 2879
1 TraesCS6D01G142300 chr6A 137379280 137381566 2286 True 945.666667 2154 91.915667 220 2869 3 chr6A.!!$R1 2649
2 TraesCS6D01G142300 chr6B 201411583 201414811 3228 True 652.800000 1373 94.109000 146 2878 5 chr6B.!!$R1 2732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.107654 GTTGCGTTCCCATAGGAGCT 60.108 55.0 0.00 0.00 45.19 4.09 F
140 141 0.178068 TTGCGTTCCCATAGGAGCTC 59.822 55.0 4.71 4.71 45.19 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 2457 1.053424 AACCTGTTCGTTGGCCTAGA 58.947 50.000 3.32 0.0 0.00 2.43 R
1884 2856 2.390599 GCGCCAGAATTCAGTCGCA 61.391 57.895 19.30 0.0 41.84 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.737525 AGTACTAGTTCTTAAAGATTTCGCG 57.262 36.000 0.00 0.00 0.00 5.87
43 44 5.451828 ACTAGTTCTTAAAGATTTCGCGC 57.548 39.130 0.00 0.00 0.00 6.86
44 45 5.169295 ACTAGTTCTTAAAGATTTCGCGCT 58.831 37.500 5.56 0.00 0.00 5.92
45 46 4.327854 AGTTCTTAAAGATTTCGCGCTG 57.672 40.909 5.56 0.00 0.00 5.18
46 47 3.746492 AGTTCTTAAAGATTTCGCGCTGT 59.254 39.130 5.56 0.00 0.00 4.40
47 48 4.927425 AGTTCTTAAAGATTTCGCGCTGTA 59.073 37.500 5.56 0.00 0.00 2.74
48 49 5.407387 AGTTCTTAAAGATTTCGCGCTGTAA 59.593 36.000 5.56 0.00 0.00 2.41
49 50 5.849357 TCTTAAAGATTTCGCGCTGTAAA 57.151 34.783 5.56 3.72 0.00 2.01
50 51 5.614760 TCTTAAAGATTTCGCGCTGTAAAC 58.385 37.500 5.56 0.00 0.00 2.01
51 52 3.889196 AAAGATTTCGCGCTGTAAACA 57.111 38.095 5.56 0.00 0.00 2.83
52 53 2.875080 AGATTTCGCGCTGTAAACAC 57.125 45.000 5.56 2.39 0.00 3.32
53 54 2.413837 AGATTTCGCGCTGTAAACACT 58.586 42.857 5.56 4.51 0.00 3.55
54 55 2.412089 AGATTTCGCGCTGTAAACACTC 59.588 45.455 5.56 0.00 0.00 3.51
55 56 1.573026 TTTCGCGCTGTAAACACTCA 58.427 45.000 5.56 0.00 0.00 3.41
56 57 1.573026 TTCGCGCTGTAAACACTCAA 58.427 45.000 5.56 0.00 0.00 3.02
57 58 1.790755 TCGCGCTGTAAACACTCAAT 58.209 45.000 5.56 0.00 0.00 2.57
58 59 2.949142 TCGCGCTGTAAACACTCAATA 58.051 42.857 5.56 0.00 0.00 1.90
59 60 3.318886 TCGCGCTGTAAACACTCAATAA 58.681 40.909 5.56 0.00 0.00 1.40
60 61 3.930229 TCGCGCTGTAAACACTCAATAAT 59.070 39.130 5.56 0.00 0.00 1.28
61 62 5.103687 TCGCGCTGTAAACACTCAATAATA 58.896 37.500 5.56 0.00 0.00 0.98
62 63 5.231357 TCGCGCTGTAAACACTCAATAATAG 59.769 40.000 5.56 0.00 0.00 1.73
63 64 5.231357 CGCGCTGTAAACACTCAATAATAGA 59.769 40.000 5.56 0.00 0.00 1.98
64 65 6.074302 CGCGCTGTAAACACTCAATAATAGAT 60.074 38.462 5.56 0.00 0.00 1.98
65 66 7.114388 CGCGCTGTAAACACTCAATAATAGATA 59.886 37.037 5.56 0.00 0.00 1.98
66 67 8.428536 GCGCTGTAAACACTCAATAATAGATAG 58.571 37.037 0.00 0.00 0.00 2.08
67 68 8.916654 CGCTGTAAACACTCAATAATAGATAGG 58.083 37.037 0.00 0.00 0.00 2.57
68 69 9.765795 GCTGTAAACACTCAATAATAGATAGGT 57.234 33.333 0.00 0.00 0.00 3.08
73 74 6.982852 ACACTCAATAATAGATAGGTGGTCG 58.017 40.000 0.00 0.00 0.00 4.79
74 75 6.776116 ACACTCAATAATAGATAGGTGGTCGA 59.224 38.462 0.00 0.00 0.00 4.20
75 76 7.040340 ACACTCAATAATAGATAGGTGGTCGAG 60.040 40.741 0.00 0.00 0.00 4.04
76 77 7.005296 ACTCAATAATAGATAGGTGGTCGAGT 58.995 38.462 0.00 0.00 0.00 4.18
77 78 7.040340 ACTCAATAATAGATAGGTGGTCGAGTG 60.040 40.741 0.00 0.00 0.00 3.51
78 79 6.208797 TCAATAATAGATAGGTGGTCGAGTGG 59.791 42.308 0.00 0.00 0.00 4.00
79 80 3.596940 ATAGATAGGTGGTCGAGTGGT 57.403 47.619 0.00 0.00 0.00 4.16
80 81 2.233305 AGATAGGTGGTCGAGTGGTT 57.767 50.000 0.00 0.00 0.00 3.67
81 82 3.377253 AGATAGGTGGTCGAGTGGTTA 57.623 47.619 0.00 0.00 0.00 2.85
82 83 3.288964 AGATAGGTGGTCGAGTGGTTAG 58.711 50.000 0.00 0.00 0.00 2.34
83 84 1.843368 TAGGTGGTCGAGTGGTTAGG 58.157 55.000 0.00 0.00 0.00 2.69
84 85 1.079336 GGTGGTCGAGTGGTTAGGC 60.079 63.158 0.00 0.00 0.00 3.93
85 86 1.542187 GGTGGTCGAGTGGTTAGGCT 61.542 60.000 0.00 0.00 0.00 4.58
86 87 0.389948 GTGGTCGAGTGGTTAGGCTG 60.390 60.000 0.00 0.00 0.00 4.85
87 88 1.448013 GGTCGAGTGGTTAGGCTGC 60.448 63.158 0.00 0.00 0.00 5.25
88 89 1.448013 GTCGAGTGGTTAGGCTGCC 60.448 63.158 11.65 11.65 0.00 4.85
89 90 1.609501 TCGAGTGGTTAGGCTGCCT 60.610 57.895 26.52 26.52 37.71 4.75
90 91 1.448540 CGAGTGGTTAGGCTGCCTG 60.449 63.158 30.83 7.75 34.61 4.85
91 92 1.679898 GAGTGGTTAGGCTGCCTGT 59.320 57.895 30.83 8.70 34.61 4.00
92 93 0.902531 GAGTGGTTAGGCTGCCTGTA 59.097 55.000 30.83 15.81 34.61 2.74
93 94 0.613777 AGTGGTTAGGCTGCCTGTAC 59.386 55.000 30.83 25.06 34.61 2.90
94 95 0.323629 GTGGTTAGGCTGCCTGTACA 59.676 55.000 30.83 21.50 34.61 2.90
95 96 0.613260 TGGTTAGGCTGCCTGTACAG 59.387 55.000 30.83 16.34 40.80 2.74
96 97 0.902531 GGTTAGGCTGCCTGTACAGA 59.097 55.000 30.83 7.00 40.25 3.41
97 98 1.278127 GGTTAGGCTGCCTGTACAGAA 59.722 52.381 30.83 13.24 40.25 3.02
98 99 2.622436 GTTAGGCTGCCTGTACAGAAG 58.378 52.381 30.83 20.09 40.25 2.85
99 100 1.195115 TAGGCTGCCTGTACAGAAGG 58.805 55.000 30.83 9.90 40.25 3.46
100 101 0.545309 AGGCTGCCTGTACAGAAGGA 60.545 55.000 24.68 8.72 40.25 3.36
101 102 0.391793 GGCTGCCTGTACAGAAGGAC 60.392 60.000 24.68 11.22 40.25 3.85
102 103 0.737715 GCTGCCTGTACAGAAGGACG 60.738 60.000 24.68 7.30 40.25 4.79
103 104 0.888619 CTGCCTGTACAGAAGGACGA 59.111 55.000 24.68 0.00 40.25 4.20
104 105 1.478510 CTGCCTGTACAGAAGGACGAT 59.521 52.381 24.68 0.00 40.25 3.73
105 106 1.204704 TGCCTGTACAGAAGGACGATG 59.795 52.381 24.68 5.09 36.91 3.84
106 107 1.471676 GCCTGTACAGAAGGACGATGG 60.472 57.143 24.68 5.28 36.91 3.51
107 108 1.471676 CCTGTACAGAAGGACGATGGC 60.472 57.143 24.68 0.00 36.91 4.40
108 109 1.204704 CTGTACAGAAGGACGATGGCA 59.795 52.381 18.45 0.00 0.00 4.92
109 110 1.831106 TGTACAGAAGGACGATGGCAT 59.169 47.619 0.00 0.00 0.00 4.40
110 111 2.236146 TGTACAGAAGGACGATGGCATT 59.764 45.455 0.00 0.00 0.00 3.56
111 112 2.496899 ACAGAAGGACGATGGCATTT 57.503 45.000 0.00 0.00 0.00 2.32
112 113 2.795329 ACAGAAGGACGATGGCATTTT 58.205 42.857 0.00 0.00 0.00 1.82
113 114 3.157087 ACAGAAGGACGATGGCATTTTT 58.843 40.909 0.00 0.00 0.00 1.94
114 115 4.331968 ACAGAAGGACGATGGCATTTTTA 58.668 39.130 0.00 0.00 0.00 1.52
115 116 4.949856 ACAGAAGGACGATGGCATTTTTAT 59.050 37.500 0.00 0.00 0.00 1.40
116 117 5.163622 ACAGAAGGACGATGGCATTTTTATG 60.164 40.000 0.00 2.95 0.00 1.90
117 118 3.715628 AGGACGATGGCATTTTTATGC 57.284 42.857 0.00 1.58 46.27 3.14
125 126 0.644843 GCATTTTTATGCCGGTTGCG 59.355 50.000 1.90 0.00 45.60 4.85
126 127 1.989430 CATTTTTATGCCGGTTGCGT 58.011 45.000 1.90 0.00 45.60 5.24
127 128 2.333014 CATTTTTATGCCGGTTGCGTT 58.667 42.857 1.90 0.00 45.60 4.84
128 129 2.053282 TTTTTATGCCGGTTGCGTTC 57.947 45.000 1.90 0.00 45.60 3.95
129 130 0.241481 TTTTATGCCGGTTGCGTTCC 59.759 50.000 1.90 0.00 45.60 3.62
130 131 1.587933 TTTATGCCGGTTGCGTTCCC 61.588 55.000 1.90 0.00 45.60 3.97
131 132 2.749706 TTATGCCGGTTGCGTTCCCA 62.750 55.000 1.90 0.00 45.60 4.37
132 133 2.544590 TATGCCGGTTGCGTTCCCAT 62.545 55.000 1.90 0.00 45.60 4.00
133 134 2.437002 GCCGGTTGCGTTCCCATA 60.437 61.111 1.90 0.00 0.00 2.74
134 135 2.469516 GCCGGTTGCGTTCCCATAG 61.470 63.158 1.90 0.00 0.00 2.23
135 136 1.817941 CCGGTTGCGTTCCCATAGG 60.818 63.158 0.00 0.00 0.00 2.57
136 137 1.219664 CGGTTGCGTTCCCATAGGA 59.780 57.895 0.00 0.00 41.88 2.94
137 138 0.810031 CGGTTGCGTTCCCATAGGAG 60.810 60.000 0.00 0.00 45.19 3.69
138 139 1.095807 GGTTGCGTTCCCATAGGAGC 61.096 60.000 0.00 0.00 45.19 4.70
139 140 0.107654 GTTGCGTTCCCATAGGAGCT 60.108 55.000 0.00 0.00 45.19 4.09
140 141 0.178068 TTGCGTTCCCATAGGAGCTC 59.822 55.000 4.71 4.71 45.19 4.09
141 142 1.069935 GCGTTCCCATAGGAGCTCC 59.930 63.158 26.22 26.22 45.19 4.70
142 143 1.749033 CGTTCCCATAGGAGCTCCC 59.251 63.158 29.54 11.59 45.19 4.30
143 144 1.759459 CGTTCCCATAGGAGCTCCCC 61.759 65.000 29.54 6.19 45.19 4.81
144 145 1.459539 TTCCCATAGGAGCTCCCCG 60.460 63.158 29.54 17.13 45.19 5.73
165 166 4.363990 CCGGGATCGATGAGCGGG 62.364 72.222 0.54 0.00 41.33 6.13
199 200 0.181350 CCAGACCAATGGGCTAGTCC 59.819 60.000 7.63 6.37 40.42 3.85
282 1122 0.661020 AAAAACCCTGCAGTCGTTCG 59.339 50.000 13.81 0.00 0.00 3.95
496 1342 4.508128 GACTCGATCGCCCGCCAA 62.508 66.667 11.09 0.00 0.00 4.52
497 1343 4.814294 ACTCGATCGCCCGCCAAC 62.814 66.667 11.09 0.00 0.00 3.77
498 1344 4.812476 CTCGATCGCCCGCCAACA 62.812 66.667 11.09 0.00 0.00 3.33
499 1345 4.812476 TCGATCGCCCGCCAACAG 62.812 66.667 11.09 0.00 0.00 3.16
500 1346 4.812476 CGATCGCCCGCCAACAGA 62.812 66.667 0.26 0.00 0.00 3.41
501 1347 3.195698 GATCGCCCGCCAACAGAC 61.196 66.667 0.00 0.00 0.00 3.51
502 1348 4.778143 ATCGCCCGCCAACAGACC 62.778 66.667 0.00 0.00 0.00 3.85
528 1387 3.049344 GCCCTATATAAGGCCTGGCTAT 58.951 50.000 19.68 11.84 45.03 2.97
1094 1953 1.218316 GCAGTAAGTGCGGCTACCT 59.782 57.895 0.00 0.00 43.99 3.08
1144 2003 6.408858 GTTTCTGCAACGAATTATCTCTGA 57.591 37.500 0.00 0.00 0.00 3.27
1145 2004 6.831769 GTTTCTGCAACGAATTATCTCTGAA 58.168 36.000 0.00 0.00 0.00 3.02
1146 2005 7.467623 GTTTCTGCAACGAATTATCTCTGAAT 58.532 34.615 0.00 0.00 0.00 2.57
1147 2006 7.615582 TTCTGCAACGAATTATCTCTGAATT 57.384 32.000 0.00 0.00 0.00 2.17
1148 2007 7.615582 TCTGCAACGAATTATCTCTGAATTT 57.384 32.000 0.00 0.00 0.00 1.82
1149 2008 7.688372 TCTGCAACGAATTATCTCTGAATTTC 58.312 34.615 0.00 0.00 0.00 2.17
1150 2009 6.785191 TGCAACGAATTATCTCTGAATTTCC 58.215 36.000 0.00 0.00 0.00 3.13
1151 2010 6.599244 TGCAACGAATTATCTCTGAATTTCCT 59.401 34.615 0.00 0.00 0.00 3.36
1152 2011 7.121168 TGCAACGAATTATCTCTGAATTTCCTT 59.879 33.333 0.00 0.00 0.00 3.36
1153 2012 7.970614 GCAACGAATTATCTCTGAATTTCCTTT 59.029 33.333 0.00 0.00 0.00 3.11
1154 2013 9.495754 CAACGAATTATCTCTGAATTTCCTTTC 57.504 33.333 0.00 0.00 0.00 2.62
1155 2014 7.910304 ACGAATTATCTCTGAATTTCCTTTCG 58.090 34.615 0.00 0.00 37.62 3.46
1156 2015 7.011482 ACGAATTATCTCTGAATTTCCTTTCGG 59.989 37.037 0.00 0.00 36.37 4.30
1157 2016 7.224753 CGAATTATCTCTGAATTTCCTTTCGGA 59.775 37.037 0.00 0.00 38.40 4.55
1158 2017 8.986929 AATTATCTCTGAATTTCCTTTCGGAT 57.013 30.769 0.00 0.00 39.60 4.18
1159 2018 8.986929 ATTATCTCTGAATTTCCTTTCGGATT 57.013 30.769 0.00 0.00 39.60 3.01
1160 2019 8.807948 TTATCTCTGAATTTCCTTTCGGATTT 57.192 30.769 0.00 0.00 39.60 2.17
1161 2020 7.709149 ATCTCTGAATTTCCTTTCGGATTTT 57.291 32.000 0.00 0.00 39.60 1.82
1216 2181 6.372381 GCCATGGCTTTAGTTCAAATTTGAAT 59.628 34.615 30.63 22.05 42.32 2.57
1269 2234 7.929785 GGAGGGAGTAATTACGAAATGATTACA 59.070 37.037 9.91 0.00 40.56 2.41
1373 2338 8.567948 CCCGAAATATAAATAGACAAATGTGCT 58.432 33.333 0.00 0.00 0.00 4.40
1374 2339 9.385902 CCGAAATATAAATAGACAAATGTGCTG 57.614 33.333 0.00 0.00 0.00 4.41
1414 2379 6.762661 CCATGCATAAAGTAAAATCAAAGGGG 59.237 38.462 0.00 0.00 0.00 4.79
1415 2380 6.293004 TGCATAAAGTAAAATCAAAGGGGG 57.707 37.500 0.00 0.00 0.00 5.40
1416 2381 6.019748 TGCATAAAGTAAAATCAAAGGGGGA 58.980 36.000 0.00 0.00 0.00 4.81
1502 2473 7.097834 GGACATATACATAGTTCTAGGCCAAC 58.902 42.308 5.01 0.00 0.00 3.77
1548 2520 6.013842 CCAGTCTTTGGGTACTTTGAATTC 57.986 41.667 0.00 0.00 43.75 2.17
1551 2523 6.265422 CAGTCTTTGGGTACTTTGAATTCCTT 59.735 38.462 2.27 0.00 0.00 3.36
1586 2558 6.985188 TTTGCTAGCCAAATGTAGTCTTAG 57.015 37.500 13.29 0.00 38.46 2.18
1599 2571 7.719871 ATGTAGTCTTAGAAAACTAGGAGCA 57.280 36.000 0.00 0.00 0.00 4.26
1617 2589 2.031157 AGCAACGCATTTTCTACCACAC 60.031 45.455 0.00 0.00 0.00 3.82
1638 2610 6.792250 CACACGAAAGCTTGTATTTTCTACTG 59.208 38.462 0.00 0.00 32.48 2.74
1639 2611 6.073222 ACACGAAAGCTTGTATTTTCTACTGG 60.073 38.462 0.00 0.00 32.48 4.00
1640 2612 5.995897 ACGAAAGCTTGTATTTTCTACTGGT 59.004 36.000 0.00 0.00 32.48 4.00
1644 2616 8.919777 AAAGCTTGTATTTTCTACTGGTAGTT 57.080 30.769 0.00 0.00 34.84 2.24
1783 2755 1.372087 GCTCGGAGAAACATGCCCTG 61.372 60.000 9.69 0.00 34.09 4.45
1983 2956 4.749099 GGTGAGATGTACAGAGAATGATGC 59.251 45.833 0.33 0.00 0.00 3.91
2182 3155 5.009911 TGTGGCATGTAATAAGCATCCAATC 59.990 40.000 0.00 0.00 30.97 2.67
2187 3160 4.641396 TGTAATAAGCATCCAATCTCCCG 58.359 43.478 0.00 0.00 0.00 5.14
2229 3246 3.949754 TGAGGCAAATGATCCAATCTGTC 59.050 43.478 0.00 0.00 0.00 3.51
2232 3249 5.021458 AGGCAAATGATCCAATCTGTCTTT 58.979 37.500 0.00 0.00 0.00 2.52
2233 3250 5.482878 AGGCAAATGATCCAATCTGTCTTTT 59.517 36.000 0.00 0.00 0.00 2.27
2247 3264 6.693315 TCTGTCTTTTCCGTTTTCTCAAAT 57.307 33.333 0.00 0.00 0.00 2.32
2304 3321 1.545931 CCCCTCCCCTCCCATTATTT 58.454 55.000 0.00 0.00 0.00 1.40
2305 3322 1.429299 CCCCTCCCCTCCCATTATTTC 59.571 57.143 0.00 0.00 0.00 2.17
2308 3325 3.437052 CCCTCCCCTCCCATTATTTCAAG 60.437 52.174 0.00 0.00 0.00 3.02
2380 3397 2.286365 TGTTCACCCATTTCAGTCCC 57.714 50.000 0.00 0.00 0.00 4.46
2383 3400 3.244770 TGTTCACCCATTTCAGTCCCTAC 60.245 47.826 0.00 0.00 0.00 3.18
2402 3419 7.822822 GTCCCTACGTAGCCATATTCAAATATT 59.177 37.037 17.41 0.00 29.35 1.28
2409 3426 7.269084 CGTAGCCATATTCAAATATTCAAAGCG 59.731 37.037 0.00 0.00 29.35 4.68
2431 3448 5.278169 GCGTCTTATAATAGTGAACGGAGGA 60.278 44.000 0.00 0.00 0.00 3.71
2469 3486 2.033299 CGGGTAAAGTGCTGCAATATGG 59.967 50.000 2.77 0.00 0.00 2.74
2476 3493 1.096967 TGCTGCAATATGGCACGAGG 61.097 55.000 0.00 0.00 39.25 4.63
2537 3554 3.560357 TCAGCCTCCTATAATAGGGCA 57.440 47.619 6.85 0.00 46.24 5.36
2611 3629 7.410485 CCTAAAGATAGACAAAAATTCTCCGC 58.590 38.462 0.00 0.00 0.00 5.54
2658 3676 1.218585 CTCCAGTGCTGCTCCAGAG 59.781 63.158 0.00 2.87 32.44 3.35
2878 3896 9.273016 GGCATCTTTTTATAACTACAGCATCTA 57.727 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.282247 CGCGAAATCTTTAAGAACTAGTACTAA 57.718 33.333 0.00 0.00 0.00 2.24
17 18 7.430502 GCGCGAAATCTTTAAGAACTAGTACTA 59.569 37.037 12.10 1.89 0.00 1.82
18 19 6.253083 GCGCGAAATCTTTAAGAACTAGTACT 59.747 38.462 12.10 0.00 0.00 2.73
19 20 6.253083 AGCGCGAAATCTTTAAGAACTAGTAC 59.747 38.462 12.10 0.00 0.00 2.73
20 21 6.252869 CAGCGCGAAATCTTTAAGAACTAGTA 59.747 38.462 12.10 0.00 0.00 1.82
21 22 5.062308 CAGCGCGAAATCTTTAAGAACTAGT 59.938 40.000 12.10 0.00 0.00 2.57
22 23 5.062308 ACAGCGCGAAATCTTTAAGAACTAG 59.938 40.000 12.10 0.00 0.00 2.57
23 24 4.927425 ACAGCGCGAAATCTTTAAGAACTA 59.073 37.500 12.10 0.00 0.00 2.24
24 25 3.746492 ACAGCGCGAAATCTTTAAGAACT 59.254 39.130 12.10 0.00 0.00 3.01
25 26 4.066710 ACAGCGCGAAATCTTTAAGAAC 57.933 40.909 12.10 0.00 0.00 3.01
26 27 5.849357 TTACAGCGCGAAATCTTTAAGAA 57.151 34.783 12.10 0.00 0.00 2.52
27 28 5.177881 TGTTTACAGCGCGAAATCTTTAAGA 59.822 36.000 12.10 0.00 0.00 2.10
28 29 5.280678 GTGTTTACAGCGCGAAATCTTTAAG 59.719 40.000 12.10 0.00 0.00 1.85
29 30 5.049954 AGTGTTTACAGCGCGAAATCTTTAA 60.050 36.000 12.10 0.00 0.00 1.52
30 31 4.449743 AGTGTTTACAGCGCGAAATCTTTA 59.550 37.500 12.10 0.00 0.00 1.85
31 32 3.250040 AGTGTTTACAGCGCGAAATCTTT 59.750 39.130 12.10 0.00 0.00 2.52
32 33 2.806244 AGTGTTTACAGCGCGAAATCTT 59.194 40.909 12.10 0.00 0.00 2.40
33 34 2.412089 GAGTGTTTACAGCGCGAAATCT 59.588 45.455 12.10 4.46 0.00 2.40
34 35 2.156891 TGAGTGTTTACAGCGCGAAATC 59.843 45.455 12.10 0.00 0.00 2.17
35 36 2.139917 TGAGTGTTTACAGCGCGAAAT 58.860 42.857 12.10 0.00 0.00 2.17
36 37 1.573026 TGAGTGTTTACAGCGCGAAA 58.427 45.000 12.10 0.00 0.00 3.46
37 38 1.573026 TTGAGTGTTTACAGCGCGAA 58.427 45.000 12.10 0.00 0.00 4.70
38 39 1.790755 ATTGAGTGTTTACAGCGCGA 58.209 45.000 12.10 0.00 0.00 5.87
39 40 3.715618 TTATTGAGTGTTTACAGCGCG 57.284 42.857 0.00 0.00 0.00 6.86
40 41 6.583912 TCTATTATTGAGTGTTTACAGCGC 57.416 37.500 0.00 0.00 0.00 5.92
41 42 8.916654 CCTATCTATTATTGAGTGTTTACAGCG 58.083 37.037 0.00 0.00 0.00 5.18
42 43 9.765795 ACCTATCTATTATTGAGTGTTTACAGC 57.234 33.333 0.00 0.00 0.00 4.40
47 48 7.926555 CGACCACCTATCTATTATTGAGTGTTT 59.073 37.037 0.00 0.00 0.00 2.83
48 49 7.287005 TCGACCACCTATCTATTATTGAGTGTT 59.713 37.037 0.00 0.00 0.00 3.32
49 50 6.776116 TCGACCACCTATCTATTATTGAGTGT 59.224 38.462 0.00 0.00 0.00 3.55
50 51 7.040340 ACTCGACCACCTATCTATTATTGAGTG 60.040 40.741 0.00 0.00 0.00 3.51
51 52 7.005296 ACTCGACCACCTATCTATTATTGAGT 58.995 38.462 0.00 0.00 0.00 3.41
52 53 7.309177 CACTCGACCACCTATCTATTATTGAG 58.691 42.308 0.00 0.00 0.00 3.02
53 54 6.208797 CCACTCGACCACCTATCTATTATTGA 59.791 42.308 0.00 0.00 0.00 2.57
54 55 6.015350 ACCACTCGACCACCTATCTATTATTG 60.015 42.308 0.00 0.00 0.00 1.90
55 56 6.075984 ACCACTCGACCACCTATCTATTATT 58.924 40.000 0.00 0.00 0.00 1.40
56 57 5.642165 ACCACTCGACCACCTATCTATTAT 58.358 41.667 0.00 0.00 0.00 1.28
57 58 5.057843 ACCACTCGACCACCTATCTATTA 57.942 43.478 0.00 0.00 0.00 0.98
58 59 3.912248 ACCACTCGACCACCTATCTATT 58.088 45.455 0.00 0.00 0.00 1.73
59 60 3.596940 ACCACTCGACCACCTATCTAT 57.403 47.619 0.00 0.00 0.00 1.98
60 61 3.377253 AACCACTCGACCACCTATCTA 57.623 47.619 0.00 0.00 0.00 1.98
61 62 2.233305 AACCACTCGACCACCTATCT 57.767 50.000 0.00 0.00 0.00 1.98
62 63 2.361438 CCTAACCACTCGACCACCTATC 59.639 54.545 0.00 0.00 0.00 2.08
63 64 2.385803 CCTAACCACTCGACCACCTAT 58.614 52.381 0.00 0.00 0.00 2.57
64 65 1.843368 CCTAACCACTCGACCACCTA 58.157 55.000 0.00 0.00 0.00 3.08
65 66 1.542187 GCCTAACCACTCGACCACCT 61.542 60.000 0.00 0.00 0.00 4.00
66 67 1.079336 GCCTAACCACTCGACCACC 60.079 63.158 0.00 0.00 0.00 4.61
67 68 0.389948 CAGCCTAACCACTCGACCAC 60.390 60.000 0.00 0.00 0.00 4.16
68 69 1.972198 CAGCCTAACCACTCGACCA 59.028 57.895 0.00 0.00 0.00 4.02
69 70 1.448013 GCAGCCTAACCACTCGACC 60.448 63.158 0.00 0.00 0.00 4.79
70 71 1.448013 GGCAGCCTAACCACTCGAC 60.448 63.158 3.29 0.00 0.00 4.20
71 72 1.609501 AGGCAGCCTAACCACTCGA 60.610 57.895 14.18 0.00 28.47 4.04
72 73 1.448540 CAGGCAGCCTAACCACTCG 60.449 63.158 15.64 0.00 29.64 4.18
73 74 0.902531 TACAGGCAGCCTAACCACTC 59.097 55.000 15.64 0.00 29.64 3.51
74 75 0.613777 GTACAGGCAGCCTAACCACT 59.386 55.000 15.64 0.00 29.64 4.00
75 76 0.323629 TGTACAGGCAGCCTAACCAC 59.676 55.000 15.64 10.09 29.64 4.16
76 77 0.613260 CTGTACAGGCAGCCTAACCA 59.387 55.000 15.64 9.70 29.64 3.67
77 78 0.902531 TCTGTACAGGCAGCCTAACC 59.097 55.000 22.48 4.99 36.49 2.85
78 79 2.622436 CTTCTGTACAGGCAGCCTAAC 58.378 52.381 22.48 16.02 36.49 2.34
79 80 1.555075 CCTTCTGTACAGGCAGCCTAA 59.445 52.381 22.48 1.92 36.49 2.69
80 81 1.195115 CCTTCTGTACAGGCAGCCTA 58.805 55.000 22.48 0.00 36.49 3.93
81 82 0.545309 TCCTTCTGTACAGGCAGCCT 60.545 55.000 22.48 8.70 36.49 4.58
82 83 0.391793 GTCCTTCTGTACAGGCAGCC 60.392 60.000 22.48 1.84 36.49 4.85
83 84 0.737715 CGTCCTTCTGTACAGGCAGC 60.738 60.000 22.48 8.74 36.49 5.25
84 85 0.888619 TCGTCCTTCTGTACAGGCAG 59.111 55.000 22.48 17.29 37.81 4.85
85 86 1.204704 CATCGTCCTTCTGTACAGGCA 59.795 52.381 22.48 9.05 0.00 4.75
86 87 1.471676 CCATCGTCCTTCTGTACAGGC 60.472 57.143 22.48 7.46 0.00 4.85
87 88 1.471676 GCCATCGTCCTTCTGTACAGG 60.472 57.143 22.48 8.17 0.00 4.00
88 89 1.204704 TGCCATCGTCCTTCTGTACAG 59.795 52.381 17.17 17.17 0.00 2.74
89 90 1.262417 TGCCATCGTCCTTCTGTACA 58.738 50.000 0.00 0.00 0.00 2.90
90 91 2.604046 ATGCCATCGTCCTTCTGTAC 57.396 50.000 0.00 0.00 0.00 2.90
91 92 3.627395 AAATGCCATCGTCCTTCTGTA 57.373 42.857 0.00 0.00 0.00 2.74
92 93 2.496899 AAATGCCATCGTCCTTCTGT 57.503 45.000 0.00 0.00 0.00 3.41
93 94 3.855689 AAAAATGCCATCGTCCTTCTG 57.144 42.857 0.00 0.00 0.00 3.02
94 95 4.202050 GCATAAAAATGCCATCGTCCTTCT 60.202 41.667 0.00 0.00 41.47 2.85
95 96 4.044426 GCATAAAAATGCCATCGTCCTTC 58.956 43.478 0.00 0.00 41.47 3.46
96 97 4.045636 GCATAAAAATGCCATCGTCCTT 57.954 40.909 0.00 0.00 41.47 3.36
97 98 3.715628 GCATAAAAATGCCATCGTCCT 57.284 42.857 0.00 0.00 41.47 3.85
106 107 0.644843 CGCAACCGGCATAAAAATGC 59.355 50.000 0.00 1.71 45.17 3.56
107 108 1.989430 ACGCAACCGGCATAAAAATG 58.011 45.000 0.00 0.00 45.17 2.32
108 109 2.601804 GAACGCAACCGGCATAAAAAT 58.398 42.857 0.00 0.00 45.17 1.82
109 110 1.336056 GGAACGCAACCGGCATAAAAA 60.336 47.619 0.00 0.00 45.17 1.94
110 111 0.241481 GGAACGCAACCGGCATAAAA 59.759 50.000 0.00 0.00 45.17 1.52
111 112 1.587933 GGGAACGCAACCGGCATAAA 61.588 55.000 0.00 0.00 45.17 1.40
112 113 2.041686 GGGAACGCAACCGGCATAA 61.042 57.895 0.00 0.00 45.17 1.90
113 114 2.437002 GGGAACGCAACCGGCATA 60.437 61.111 0.00 0.00 45.17 3.14
114 115 2.544590 TATGGGAACGCAACCGGCAT 62.545 55.000 0.00 0.00 45.17 4.40
115 116 3.255423 TATGGGAACGCAACCGGCA 62.255 57.895 0.00 0.00 45.17 5.69
116 117 2.437002 TATGGGAACGCAACCGGC 60.437 61.111 0.00 0.00 39.22 6.13
117 118 1.817941 CCTATGGGAACGCAACCGG 60.818 63.158 0.00 0.00 34.79 5.28
118 119 0.810031 CTCCTATGGGAACGCAACCG 60.810 60.000 0.00 0.00 41.69 4.44
119 120 1.095807 GCTCCTATGGGAACGCAACC 61.096 60.000 0.00 0.00 41.69 3.77
120 121 0.107654 AGCTCCTATGGGAACGCAAC 60.108 55.000 11.25 0.00 41.69 4.17
121 122 0.178068 GAGCTCCTATGGGAACGCAA 59.822 55.000 11.25 0.00 41.69 4.85
122 123 1.686325 GGAGCTCCTATGGGAACGCA 61.686 60.000 26.25 0.00 41.69 5.24
123 124 1.069935 GGAGCTCCTATGGGAACGC 59.930 63.158 26.25 0.00 41.69 4.84
124 125 1.749033 GGGAGCTCCTATGGGAACG 59.251 63.158 31.36 0.00 41.69 3.95
125 126 1.759459 CGGGGAGCTCCTATGGGAAC 61.759 65.000 31.36 12.50 41.69 3.62
126 127 1.459539 CGGGGAGCTCCTATGGGAA 60.460 63.158 31.36 0.00 41.69 3.97
127 128 2.201490 CGGGGAGCTCCTATGGGA 59.799 66.667 31.36 0.00 39.70 4.37
128 129 2.925170 CCGGGGAGCTCCTATGGG 60.925 72.222 31.36 21.75 35.95 4.00
129 130 2.925170 CCCGGGGAGCTCCTATGG 60.925 72.222 31.36 26.77 35.95 2.74
130 131 3.631046 GCCCGGGGAGCTCCTATG 61.631 72.222 31.36 20.18 35.95 2.23
131 132 4.964241 GGCCCGGGGAGCTCCTAT 62.964 72.222 31.36 0.00 35.95 2.57
144 145 4.008933 CTCATCGATCCCGGGCCC 62.009 72.222 18.49 13.57 36.24 5.80
172 173 2.110967 CATTGGTCTGGCCTCGCAG 61.111 63.158 3.32 0.00 38.35 5.18
176 177 1.635817 TAGCCCATTGGTCTGGCCTC 61.636 60.000 3.32 0.00 46.55 4.70
268 1108 0.806868 TACTACGAACGACTGCAGGG 59.193 55.000 19.93 12.10 0.00 4.45
271 1111 1.400629 GCTGTACTACGAACGACTGCA 60.401 52.381 0.14 0.00 36.92 4.41
374 1220 1.444895 CGTTTACAGGGTCGTCGGG 60.445 63.158 0.00 0.00 0.00 5.14
496 1342 3.631672 TATATAGGGCGGGCGGTCTGT 62.632 57.143 0.00 0.00 0.00 3.41
497 1343 0.968901 TATATAGGGCGGGCGGTCTG 60.969 60.000 0.00 0.00 0.00 3.51
498 1344 0.251922 TTATATAGGGCGGGCGGTCT 60.252 55.000 0.00 0.00 0.00 3.85
499 1345 0.175073 CTTATATAGGGCGGGCGGTC 59.825 60.000 0.00 0.00 0.00 4.79
500 1346 1.262640 CCTTATATAGGGCGGGCGGT 61.263 60.000 0.00 0.00 40.67 5.68
501 1347 1.520666 CCTTATATAGGGCGGGCGG 59.479 63.158 0.00 0.00 40.67 6.13
502 1348 1.153429 GCCTTATATAGGGCGGGCG 60.153 63.158 19.04 0.00 44.91 6.13
503 1349 4.957164 GCCTTATATAGGGCGGGC 57.043 61.111 19.04 8.17 44.91 6.13
508 1367 3.322254 CGATAGCCAGGCCTTATATAGGG 59.678 52.174 8.22 6.53 44.91 3.53
897 1756 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
898 1757 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
899 1758 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
900 1759 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
901 1760 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
902 1761 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
903 1762 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
904 1763 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
905 1764 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
906 1765 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
907 1766 3.640967 AGCTCTCTCTCTCTCTCTCTCTC 59.359 52.174 0.00 0.00 0.00 3.20
908 1767 3.652055 AGCTCTCTCTCTCTCTCTCTCT 58.348 50.000 0.00 0.00 0.00 3.10
909 1768 4.560513 GCTAGCTCTCTCTCTCTCTCTCTC 60.561 54.167 7.70 0.00 0.00 3.20
917 1776 2.874701 CTGACAGCTAGCTCTCTCTCTC 59.125 54.545 16.15 1.68 0.00 3.20
1094 1953 1.529478 TTGGTTTGCTGGGCGCTAA 60.529 52.632 7.64 0.00 40.11 3.09
1184 2043 5.016173 TGAACTAAAGCCATGGCAAGTATT 58.984 37.500 37.18 24.38 44.88 1.89
1216 2181 9.896263 GTTCCAAAATACTTATCGTGGTTTTAA 57.104 29.630 0.00 0.00 0.00 1.52
1220 2185 5.122711 CCGTTCCAAAATACTTATCGTGGTT 59.877 40.000 0.00 0.00 0.00 3.67
1221 2186 4.632688 CCGTTCCAAAATACTTATCGTGGT 59.367 41.667 0.00 0.00 0.00 4.16
1222 2187 4.871557 TCCGTTCCAAAATACTTATCGTGG 59.128 41.667 0.00 0.00 0.00 4.94
1223 2188 5.006358 CCTCCGTTCCAAAATACTTATCGTG 59.994 44.000 0.00 0.00 0.00 4.35
1224 2189 5.114081 CCTCCGTTCCAAAATACTTATCGT 58.886 41.667 0.00 0.00 0.00 3.73
1225 2190 4.510340 CCCTCCGTTCCAAAATACTTATCG 59.490 45.833 0.00 0.00 0.00 2.92
1226 2191 5.677567 TCCCTCCGTTCCAAAATACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
1227 2192 5.191124 ACTCCCTCCGTTCCAAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
1228 2193 4.533311 ACTCCCTCCGTTCCAAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
1239 2204 4.376340 TTCGTAATTACTCCCTCCGTTC 57.624 45.455 13.56 0.00 0.00 3.95
1269 2234 7.556844 ACTATAGTATACAAAGTGCAGCAACT 58.443 34.615 2.75 0.00 0.00 3.16
1373 2338 2.553028 GCATGGACCTGTTCTTTCCTCA 60.553 50.000 0.00 0.00 0.00 3.86
1374 2339 2.087646 GCATGGACCTGTTCTTTCCTC 58.912 52.381 0.00 0.00 0.00 3.71
1492 2457 1.053424 AACCTGTTCGTTGGCCTAGA 58.947 50.000 3.32 0.00 0.00 2.43
1530 2502 8.581253 AGATAAGGAATTCAAAGTACCCAAAG 57.419 34.615 7.93 0.00 0.00 2.77
1586 2558 3.831715 AATGCGTTGCTCCTAGTTTTC 57.168 42.857 0.00 0.00 0.00 2.29
1599 2571 2.485903 TCGTGTGGTAGAAAATGCGTT 58.514 42.857 0.00 0.00 0.00 4.84
1617 2589 6.481954 ACCAGTAGAAAATACAAGCTTTCG 57.518 37.500 0.00 0.00 36.78 3.46
1638 2610 9.240159 CAAAAATGGTTAGTGTTGTTAACTACC 57.760 33.333 15.98 8.59 32.81 3.18
1639 2611 9.791820 ACAAAAATGGTTAGTGTTGTTAACTAC 57.208 29.630 12.51 12.51 32.81 2.73
1644 2616 6.535508 GCCAACAAAAATGGTTAGTGTTGTTA 59.464 34.615 12.35 0.00 44.78 2.41
1884 2856 2.390599 GCGCCAGAATTCAGTCGCA 61.391 57.895 19.30 0.00 41.84 5.10
1983 2956 5.453903 CCCCATCTAACATCTTACAGGTGAG 60.454 48.000 0.00 0.00 0.00 3.51
2167 3140 4.641396 CACGGGAGATTGGATGCTTATTA 58.359 43.478 0.00 0.00 0.00 0.98
2182 3155 1.066143 ACTTGGACATTAGCACGGGAG 60.066 52.381 0.00 0.00 0.00 4.30
2187 3160 5.122396 CCTCACTTTACTTGGACATTAGCAC 59.878 44.000 0.00 0.00 0.00 4.40
2284 3301 0.404946 AATAATGGGAGGGGAGGGGG 60.405 60.000 0.00 0.00 0.00 5.40
2287 3304 3.463329 TCTTGAAATAATGGGAGGGGAGG 59.537 47.826 0.00 0.00 0.00 4.30
2288 3305 4.796110 TCTTGAAATAATGGGAGGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
2289 3306 4.482025 ACATCTTGAAATAATGGGAGGGGA 59.518 41.667 0.00 0.00 0.00 4.81
2290 3307 4.808042 ACATCTTGAAATAATGGGAGGGG 58.192 43.478 0.00 0.00 0.00 4.79
2291 3308 6.796785 AAACATCTTGAAATAATGGGAGGG 57.203 37.500 0.00 0.00 0.00 4.30
2292 3309 9.586435 GTTAAAACATCTTGAAATAATGGGAGG 57.414 33.333 0.00 0.00 0.00 4.30
2383 3400 7.269084 CGCTTTGAATATTTGAATATGGCTACG 59.731 37.037 0.00 0.00 32.17 3.51
2402 3419 6.474427 CCGTTCACTATTATAAGACGCTTTGA 59.526 38.462 0.00 0.00 0.00 2.69
2407 3424 4.916249 CCTCCGTTCACTATTATAAGACGC 59.084 45.833 0.00 0.00 0.00 5.19
2409 3426 7.714703 ACTTCCTCCGTTCACTATTATAAGAC 58.285 38.462 0.00 0.00 0.00 3.01
2469 3486 2.053627 CAATTTTGAGTTGCCTCGTGC 58.946 47.619 0.00 0.00 40.85 5.34
2476 3493 8.970691 ATAGTATTGTGTCAATTTTGAGTTGC 57.029 30.769 0.37 0.00 37.98 4.17
2494 3511 9.630098 CTGATTTGAAACTGCACAAATAGTATT 57.370 29.630 11.67 0.00 43.62 1.89
2611 3629 5.023533 TCTCCATCGTGATTTAAAGGAGG 57.976 43.478 14.19 3.07 41.09 4.30
2658 3676 2.858745 TCCAAAGTAGCCTGTGGTTTC 58.141 47.619 0.00 0.00 45.26 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.