Multiple sequence alignment - TraesCS6D01G141200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G141200 chr6D 100.000 4512 0 0 1 4512 110866668 110871179 0.000000e+00 8333.0
1 TraesCS6D01G141200 chr6D 84.061 1832 221 35 1873 3659 461820168 461818363 0.000000e+00 1700.0
2 TraesCS6D01G141200 chr6D 83.589 1889 227 42 1873 3709 462026492 462024635 0.000000e+00 1694.0
3 TraesCS6D01G141200 chr6D 83.100 1858 246 45 1747 3558 428960227 428962062 0.000000e+00 1629.0
4 TraesCS6D01G141200 chr6D 80.779 770 97 33 2880 3617 466524981 466525731 5.100000e-154 555.0
5 TraesCS6D01G141200 chr6D 95.122 82 4 0 1312 1393 438275615 438275696 3.660000e-26 130.0
6 TraesCS6D01G141200 chr6D 89.216 102 9 2 1308 1408 20145813 20145713 4.740000e-25 126.0
7 TraesCS6D01G141200 chr6D 88.312 77 7 1 1666 1742 403973081 403973007 1.730000e-14 91.6
8 TraesCS6D01G141200 chr6D 93.478 46 3 0 1704 1749 81922708 81922663 8.100000e-08 69.4
9 TraesCS6D01G141200 chr6B 95.965 2082 54 15 1709 3773 199741291 199743359 0.000000e+00 3352.0
10 TraesCS6D01G141200 chr6B 86.187 1904 193 39 1745 3618 615087975 615086112 0.000000e+00 1995.0
11 TraesCS6D01G141200 chr6B 84.107 1787 213 36 1873 3616 704155640 704153882 0.000000e+00 1661.0
12 TraesCS6D01G141200 chr6B 83.199 1863 244 45 1749 3563 645653445 645655286 0.000000e+00 1642.0
13 TraesCS6D01G141200 chr6B 82.548 1931 238 53 1749 3616 711739523 711737629 0.000000e+00 1607.0
14 TraesCS6D01G141200 chr6B 82.564 1864 254 47 1749 3563 646010231 646008390 0.000000e+00 1576.0
15 TraesCS6D01G141200 chr6B 85.340 573 53 15 3953 4512 199744588 199745142 8.470000e-157 564.0
16 TraesCS6D01G141200 chr6B 84.886 569 54 15 3953 4506 675804861 675805412 3.070000e-151 545.0
17 TraesCS6D01G141200 chr6B 84.452 566 62 11 3953 4506 18410207 18410758 6.640000e-148 534.0
18 TraesCS6D01G141200 chr6B 84.124 485 57 8 3152 3618 615085607 615085125 6.880000e-123 451.0
19 TraesCS6D01G141200 chr6B 84.009 469 45 21 105 559 172271506 172271958 1.500000e-114 424.0
20 TraesCS6D01G141200 chr6B 81.865 579 31 25 557 1096 199739965 199740508 1.940000e-113 420.0
21 TraesCS6D01G141200 chr6B 79.661 472 55 27 110 561 559483828 559483378 7.340000e-78 302.0
22 TraesCS6D01G141200 chr6B 81.513 119 11 8 595 704 710152153 710152037 2.240000e-13 87.9
23 TraesCS6D01G141200 chr6A 94.157 2071 86 14 1719 3773 135224250 135226301 0.000000e+00 3121.0
24 TraesCS6D01G141200 chr6A 85.428 1846 209 31 1742 3558 554834564 554832750 0.000000e+00 1864.0
25 TraesCS6D01G141200 chr6A 84.046 1893 222 42 1873 3716 608793385 608791524 0.000000e+00 1749.0
26 TraesCS6D01G141200 chr6A 83.951 1888 230 43 1873 3716 608680045 608678187 0.000000e+00 1740.0
27 TraesCS6D01G141200 chr6A 82.501 1863 254 48 1749 3563 573636272 573638110 0.000000e+00 1568.0
28 TraesCS6D01G141200 chr6A 82.410 1859 258 46 1749 3559 574222289 574220452 0.000000e+00 1557.0
29 TraesCS6D01G141200 chr6A 82.333 1766 215 50 1908 3616 613092201 613090476 0.000000e+00 1443.0
30 TraesCS6D01G141200 chr6A 89.212 584 37 7 3953 4512 135226465 135227046 0.000000e+00 706.0
31 TraesCS6D01G141200 chr6A 85.538 567 53 14 3953 4506 616025383 616025933 2.360000e-157 566.0
32 TraesCS6D01G141200 chr6A 82.286 525 53 22 616 1124 135223594 135224094 6.980000e-113 418.0
33 TraesCS6D01G141200 chr6A 91.176 170 10 2 3953 4117 463742237 463742406 4.540000e-55 226.0
34 TraesCS6D01G141200 chr6A 97.297 37 1 0 1166 1202 135224178 135224214 3.770000e-06 63.9
35 TraesCS6D01G141200 chr2D 95.349 559 14 2 1 559 110058882 110059428 0.000000e+00 878.0
36 TraesCS6D01G141200 chr2D 89.381 339 25 6 3 339 548887771 548887442 2.510000e-112 416.0
37 TraesCS6D01G141200 chr2D 92.308 91 7 0 1311 1401 71522714 71522804 3.660000e-26 130.0
38 TraesCS6D01G141200 chr2D 97.826 46 1 0 1219 1264 395282537 395282492 3.740000e-11 80.5
39 TraesCS6D01G141200 chr5B 92.376 564 17 9 3 559 473283342 473283886 0.000000e+00 780.0
40 TraesCS6D01G141200 chr5B 87.912 91 11 0 1311 1401 128765251 128765341 1.720000e-19 108.0
41 TraesCS6D01G141200 chr5B 100.000 28 0 0 1664 1691 101894978 101895005 8.000000e-03 52.8
42 TraesCS6D01G141200 chr3B 90.845 568 25 10 3 562 708715200 708714652 0.000000e+00 736.0
43 TraesCS6D01G141200 chr3B 84.683 568 58 15 3953 4506 8672115 8672667 1.430000e-149 540.0
44 TraesCS6D01G141200 chr3B 92.308 91 7 0 1311 1401 567500163 567500253 3.660000e-26 130.0
45 TraesCS6D01G141200 chr3B 89.888 89 9 0 1311 1399 236509956 236510044 1.030000e-21 115.0
46 TraesCS6D01G141200 chr3B 83.810 105 16 1 1311 1414 759445346 759445242 1.030000e-16 99.0
47 TraesCS6D01G141200 chr3B 97.297 37 1 0 1704 1740 829775627 829775663 3.770000e-06 63.9
48 TraesCS6D01G141200 chr7B 92.248 516 26 6 50 559 209396556 209396049 0.000000e+00 719.0
49 TraesCS6D01G141200 chr7B 87.617 533 18 16 27 559 139717610 139718094 3.910000e-160 575.0
50 TraesCS6D01G141200 chr7B 85.362 567 55 13 3953 4506 565762983 565763534 3.050000e-156 562.0
51 TraesCS6D01G141200 chr7B 82.600 523 54 22 50 567 332399380 332398890 1.160000e-115 427.0
52 TraesCS6D01G141200 chr7B 89.024 82 3 1 1664 1739 246511721 246511640 3.720000e-16 97.1
53 TraesCS6D01G141200 chr7B 97.826 46 1 0 1219 1264 327273007 327273052 3.740000e-11 80.5
54 TraesCS6D01G141200 chr7B 81.579 76 13 1 1666 1740 680190636 680190561 1.360000e-05 62.1
55 TraesCS6D01G141200 chr4D 84.912 570 44 18 3 561 60872736 60872198 5.140000e-149 538.0
56 TraesCS6D01G141200 chr2B 83.422 567 61 15 3953 4506 61181392 61181938 3.140000e-136 496.0
57 TraesCS6D01G141200 chr2B 92.727 55 4 0 1219 1273 705693742 705693796 3.740000e-11 80.5
58 TraesCS6D01G141200 chr2B 100.000 28 0 0 1663 1690 297434447 297434420 8.000000e-03 52.8
59 TraesCS6D01G141200 chr4B 84.483 522 49 16 50 563 314546022 314545525 1.890000e-133 486.0
60 TraesCS6D01G141200 chr4B 86.000 250 16 6 50 293 658791816 658792052 2.690000e-62 250.0
61 TraesCS6D01G141200 chr4B 80.460 348 43 13 237 561 40741474 40741819 4.510000e-60 243.0
62 TraesCS6D01G141200 chr4B 91.176 170 10 2 3953 4117 186425666 186425835 4.540000e-55 226.0
63 TraesCS6D01G141200 chr4B 90.964 166 8 2 48 207 314546216 314546052 2.730000e-52 217.0
64 TraesCS6D01G141200 chr4B 89.565 115 6 1 48 156 658791522 658791636 1.690000e-29 141.0
65 TraesCS6D01G141200 chr4B 87.692 65 6 2 1219 1281 403271644 403271580 1.740000e-09 75.0
66 TraesCS6D01G141200 chr3D 94.534 311 15 1 249 559 189776491 189776183 3.160000e-131 479.0
67 TraesCS6D01G141200 chr3D 86.053 337 20 7 3 336 153511229 153511541 2.010000e-88 337.0
68 TraesCS6D01G141200 chr3D 85.065 154 10 6 5 157 189776975 189776834 1.310000e-30 145.0
69 TraesCS6D01G141200 chr3D 92.308 91 7 0 1311 1401 524498179 524498089 3.660000e-26 130.0
70 TraesCS6D01G141200 chr3D 100.000 28 0 0 1663 1690 123813578 123813551 8.000000e-03 52.8
71 TraesCS6D01G141200 chr3A 93.284 268 12 2 52 319 303565029 303565290 1.520000e-104 390.0
72 TraesCS6D01G141200 chr3A 90.071 282 18 5 3 283 422677967 422678239 1.540000e-94 357.0
73 TraesCS6D01G141200 chr3A 85.756 344 21 10 3 343 176143761 176143443 5.590000e-89 339.0
74 TraesCS6D01G141200 chr3A 85.427 199 11 4 371 561 303565651 303565839 1.660000e-44 191.0
75 TraesCS6D01G141200 chr3A 93.846 65 2 1 310 374 303565257 303565319 3.720000e-16 97.1
76 TraesCS6D01G141200 chr3A 94.231 52 2 1 1213 1264 649547125 649547175 1.350000e-10 78.7
77 TraesCS6D01G141200 chr7A 87.387 333 27 8 3 320 78419239 78419571 7.130000e-98 368.0
78 TraesCS6D01G141200 chr7A 82.081 346 40 12 3 334 674269083 674269420 4.450000e-70 276.0
79 TraesCS6D01G141200 chr7A 83.673 147 6 4 4378 4506 576479373 576479519 6.130000e-24 122.0
80 TraesCS6D01G141200 chr7A 85.149 101 14 1 1312 1412 430781546 430781447 7.990000e-18 102.0
81 TraesCS6D01G141200 chr7A 90.909 55 5 0 1219 1273 615329669 615329615 1.740000e-09 75.0
82 TraesCS6D01G141200 chr7A 82.500 80 11 3 1666 1744 94383539 94383616 2.910000e-07 67.6
83 TraesCS6D01G141200 chr2A 90.438 251 10 5 48 293 100225292 100225051 7.280000e-83 318.0
84 TraesCS6D01G141200 chr1A 90.588 170 11 2 3953 4117 577674928 577674759 2.110000e-53 220.0
85 TraesCS6D01G141200 chr1A 100.000 43 0 0 1219 1261 124882677 124882719 3.740000e-11 80.5
86 TraesCS6D01G141200 chr1A 82.090 67 8 4 1713 1775 6567116 6567050 2.000000e-03 54.7
87 TraesCS6D01G141200 chr1B 82.041 245 34 7 341 578 155694683 155694442 2.750000e-47 200.0
88 TraesCS6D01G141200 chr1B 82.589 224 31 5 341 559 155429219 155429439 1.660000e-44 191.0
89 TraesCS6D01G141200 chr1B 86.364 110 13 2 1311 1419 653609426 653609318 7.930000e-23 119.0
90 TraesCS6D01G141200 chr1B 89.831 59 6 0 1219 1277 377103480 377103422 4.840000e-10 76.8
91 TraesCS6D01G141200 chr5D 92.308 91 7 0 1311 1401 16290640 16290550 3.660000e-26 130.0
92 TraesCS6D01G141200 chr5D 89.109 101 9 2 1308 1406 45483783 45483683 1.700000e-24 124.0
93 TraesCS6D01G141200 chr5D 84.466 103 10 5 1312 1413 445060522 445060425 3.720000e-16 97.1
94 TraesCS6D01G141200 chr5D 100.000 28 0 0 1663 1690 364397844 364397817 8.000000e-03 52.8
95 TraesCS6D01G141200 chr4A 84.000 150 6 4 4378 4509 715473128 715472979 1.320000e-25 128.0
96 TraesCS6D01G141200 chr4A 97.826 46 1 0 1219 1264 381220525 381220480 3.740000e-11 80.5
97 TraesCS6D01G141200 chr7D 90.526 95 8 1 1308 1402 226690343 226690436 1.700000e-24 124.0
98 TraesCS6D01G141200 chr7D 88.889 99 8 3 1312 1410 519264546 519264641 7.930000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G141200 chr6D 110866668 110871179 4511 False 8333.000000 8333 100.000000 1 4512 1 chr6D.!!$F1 4511
1 TraesCS6D01G141200 chr6D 461818363 461820168 1805 True 1700.000000 1700 84.061000 1873 3659 1 chr6D.!!$R4 1786
2 TraesCS6D01G141200 chr6D 462024635 462026492 1857 True 1694.000000 1694 83.589000 1873 3709 1 chr6D.!!$R5 1836
3 TraesCS6D01G141200 chr6D 428960227 428962062 1835 False 1629.000000 1629 83.100000 1747 3558 1 chr6D.!!$F2 1811
4 TraesCS6D01G141200 chr6D 466524981 466525731 750 False 555.000000 555 80.779000 2880 3617 1 chr6D.!!$F4 737
5 TraesCS6D01G141200 chr6B 704153882 704155640 1758 True 1661.000000 1661 84.107000 1873 3616 1 chr6B.!!$R3 1743
6 TraesCS6D01G141200 chr6B 645653445 645655286 1841 False 1642.000000 1642 83.199000 1749 3563 1 chr6B.!!$F3 1814
7 TraesCS6D01G141200 chr6B 711737629 711739523 1894 True 1607.000000 1607 82.548000 1749 3616 1 chr6B.!!$R5 1867
8 TraesCS6D01G141200 chr6B 646008390 646010231 1841 True 1576.000000 1576 82.564000 1749 3563 1 chr6B.!!$R2 1814
9 TraesCS6D01G141200 chr6B 199739965 199745142 5177 False 1445.333333 3352 87.723333 557 4512 3 chr6B.!!$F5 3955
10 TraesCS6D01G141200 chr6B 615085125 615087975 2850 True 1223.000000 1995 85.155500 1745 3618 2 chr6B.!!$R6 1873
11 TraesCS6D01G141200 chr6B 675804861 675805412 551 False 545.000000 545 84.886000 3953 4506 1 chr6B.!!$F4 553
12 TraesCS6D01G141200 chr6B 18410207 18410758 551 False 534.000000 534 84.452000 3953 4506 1 chr6B.!!$F1 553
13 TraesCS6D01G141200 chr6A 554832750 554834564 1814 True 1864.000000 1864 85.428000 1742 3558 1 chr6A.!!$R1 1816
14 TraesCS6D01G141200 chr6A 608791524 608793385 1861 True 1749.000000 1749 84.046000 1873 3716 1 chr6A.!!$R4 1843
15 TraesCS6D01G141200 chr6A 608678187 608680045 1858 True 1740.000000 1740 83.951000 1873 3716 1 chr6A.!!$R3 1843
16 TraesCS6D01G141200 chr6A 573636272 573638110 1838 False 1568.000000 1568 82.501000 1749 3563 1 chr6A.!!$F2 1814
17 TraesCS6D01G141200 chr6A 574220452 574222289 1837 True 1557.000000 1557 82.410000 1749 3559 1 chr6A.!!$R2 1810
18 TraesCS6D01G141200 chr6A 613090476 613092201 1725 True 1443.000000 1443 82.333000 1908 3616 1 chr6A.!!$R5 1708
19 TraesCS6D01G141200 chr6A 135223594 135227046 3452 False 1077.225000 3121 90.738000 616 4512 4 chr6A.!!$F4 3896
20 TraesCS6D01G141200 chr6A 616025383 616025933 550 False 566.000000 566 85.538000 3953 4506 1 chr6A.!!$F3 553
21 TraesCS6D01G141200 chr2D 110058882 110059428 546 False 878.000000 878 95.349000 1 559 1 chr2D.!!$F2 558
22 TraesCS6D01G141200 chr5B 473283342 473283886 544 False 780.000000 780 92.376000 3 559 1 chr5B.!!$F3 556
23 TraesCS6D01G141200 chr3B 708714652 708715200 548 True 736.000000 736 90.845000 3 562 1 chr3B.!!$R1 559
24 TraesCS6D01G141200 chr3B 8672115 8672667 552 False 540.000000 540 84.683000 3953 4506 1 chr3B.!!$F1 553
25 TraesCS6D01G141200 chr7B 209396049 209396556 507 True 719.000000 719 92.248000 50 559 1 chr7B.!!$R1 509
26 TraesCS6D01G141200 chr7B 565762983 565763534 551 False 562.000000 562 85.362000 3953 4506 1 chr7B.!!$F3 553
27 TraesCS6D01G141200 chr4D 60872198 60872736 538 True 538.000000 538 84.912000 3 561 1 chr4D.!!$R1 558
28 TraesCS6D01G141200 chr2B 61181392 61181938 546 False 496.000000 496 83.422000 3953 4506 1 chr2B.!!$F1 553
29 TraesCS6D01G141200 chr4B 314545525 314546216 691 True 351.500000 486 87.723500 48 563 2 chr4B.!!$R2 515
30 TraesCS6D01G141200 chr3D 189776183 189776975 792 True 312.000000 479 89.799500 5 559 2 chr3D.!!$R3 554
31 TraesCS6D01G141200 chr3A 303565029 303565839 810 False 226.033333 390 90.852333 52 561 3 chr3A.!!$F3 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 1422 0.178973 AAGCGGCCACCCTTTTTAGT 60.179 50.0 2.24 0.00 0.00 2.24 F
1600 2461 0.322456 TTGTGCCTTTCCATCGGGAG 60.322 55.0 0.00 0.00 46.01 4.30 F
1688 2549 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.0 0.00 0.00 0.00 2.24 F
1958 3208 0.329261 ATAGGCTCAGCAAGTTGCCA 59.671 50.0 24.02 10.41 46.52 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 2530 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30 R
3189 4508 0.178891 ACCCTTCTTCCTCTGCTCCA 60.179 55.000 0.00 0.00 0.00 3.86 R
3485 4813 1.153429 GGGAAGTGAATCCGGACCG 60.153 63.158 6.12 6.99 40.62 4.79 R
3902 6512 0.036010 ACAATCCCTCGACAAGGCAG 60.036 55.000 0.00 0.00 44.71 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.831307 AATCTGGACGGCTAGGGTTC 59.169 55.000 0.12 0.00 0.00 3.62
308 574 3.003173 CGACTTGGGGAGGAGGCA 61.003 66.667 0.00 0.00 0.00 4.75
417 1024 1.671054 CTGAACCGCGTGGGAACAT 60.671 57.895 21.14 0.00 46.14 2.71
570 1185 0.249489 CGAGGCCTAAAGTGGATCGG 60.249 60.000 4.42 0.00 35.57 4.18
622 1238 3.834799 CGTGTACCGGGCTCCCTC 61.835 72.222 6.32 0.00 0.00 4.30
623 1239 3.468140 GTGTACCGGGCTCCCTCC 61.468 72.222 6.32 0.00 0.00 4.30
624 1240 3.680196 TGTACCGGGCTCCCTCCT 61.680 66.667 6.32 0.00 0.00 3.69
625 1241 2.365237 GTACCGGGCTCCCTCCTT 60.365 66.667 6.32 0.00 0.00 3.36
626 1242 1.993948 GTACCGGGCTCCCTCCTTT 60.994 63.158 6.32 0.00 0.00 3.11
685 1301 1.671261 CGAGTGGTGCTTGAGAAGAGG 60.671 57.143 0.00 0.00 0.00 3.69
690 1306 0.319900 GTGCTTGAGAAGAGGCGACA 60.320 55.000 0.00 0.00 0.00 4.35
708 1324 4.094887 GCGACAAAATAAGAGCTCCAATCA 59.905 41.667 10.93 0.00 0.00 2.57
742 1358 4.492955 CTCCTTGTCGAGCTGCTC 57.507 61.111 19.53 19.53 0.00 4.26
743 1359 1.153667 CTCCTTGTCGAGCTGCTCC 60.154 63.158 22.97 11.13 0.00 4.70
744 1360 1.603236 CTCCTTGTCGAGCTGCTCCT 61.603 60.000 22.97 0.00 0.00 3.69
745 1361 1.188219 TCCTTGTCGAGCTGCTCCTT 61.188 55.000 22.97 0.00 0.00 3.36
746 1362 0.321122 CCTTGTCGAGCTGCTCCTTT 60.321 55.000 22.97 0.00 0.00 3.11
748 1364 0.667487 TTGTCGAGCTGCTCCTTTCG 60.667 55.000 22.97 12.53 34.56 3.46
749 1365 1.807573 GTCGAGCTGCTCCTTTCGG 60.808 63.158 22.97 8.69 34.08 4.30
750 1366 1.977009 TCGAGCTGCTCCTTTCGGA 60.977 57.895 22.97 10.88 37.82 4.55
762 1394 1.404181 CCTTTCGGAGAATCGCAGTCA 60.404 52.381 0.00 0.00 45.90 3.41
786 1419 1.045911 TCAAAGCGGCCACCCTTTTT 61.046 50.000 2.24 0.00 0.00 1.94
787 1420 0.676736 CAAAGCGGCCACCCTTTTTA 59.323 50.000 2.24 0.00 0.00 1.52
788 1421 0.966179 AAAGCGGCCACCCTTTTTAG 59.034 50.000 2.24 0.00 0.00 1.85
789 1422 0.178973 AAGCGGCCACCCTTTTTAGT 60.179 50.000 2.24 0.00 0.00 2.24
790 1423 0.608308 AGCGGCCACCCTTTTTAGTC 60.608 55.000 2.24 0.00 0.00 2.59
791 1424 1.918868 GCGGCCACCCTTTTTAGTCG 61.919 60.000 2.24 0.00 0.00 4.18
792 1425 1.880894 GGCCACCCTTTTTAGTCGC 59.119 57.895 0.00 0.00 0.00 5.19
793 1426 0.891904 GGCCACCCTTTTTAGTCGCA 60.892 55.000 0.00 0.00 0.00 5.10
794 1427 0.955905 GCCACCCTTTTTAGTCGCAA 59.044 50.000 0.00 0.00 0.00 4.85
795 1428 1.544246 GCCACCCTTTTTAGTCGCAAT 59.456 47.619 0.00 0.00 0.00 3.56
796 1429 2.415491 GCCACCCTTTTTAGTCGCAATC 60.415 50.000 0.00 0.00 0.00 2.67
797 1430 3.081804 CCACCCTTTTTAGTCGCAATCT 58.918 45.455 0.00 0.00 0.00 2.40
846 1484 6.775594 TCAGAAACCTCTCTCGATTTCATA 57.224 37.500 9.02 0.00 34.22 2.15
859 1497 3.736252 CGATTTCATACTCCTAGTTGCCG 59.264 47.826 0.00 0.00 0.00 5.69
891 1529 2.610727 GGTCCAAGCCGCTGTATATCTC 60.611 54.545 0.00 0.00 0.00 2.75
892 1530 2.297597 GTCCAAGCCGCTGTATATCTCT 59.702 50.000 0.00 0.00 0.00 3.10
1035 1690 2.965147 CTCCTCCTGATCCTCTTCCTTC 59.035 54.545 0.00 0.00 0.00 3.46
1062 1717 5.104259 AGATTCTCTTACAACATCACCCC 57.896 43.478 0.00 0.00 0.00 4.95
1124 1859 4.567159 GGAACCATAATCAGAAGTCGTGTC 59.433 45.833 0.00 0.00 0.00 3.67
1144 1891 7.827236 TCGTGTCCTTCTTGTGGAAATTATAAT 59.173 33.333 0.00 0.00 35.10 1.28
1145 1892 7.910162 CGTGTCCTTCTTGTGGAAATTATAATG 59.090 37.037 0.00 0.00 35.10 1.90
1146 1893 8.956426 GTGTCCTTCTTGTGGAAATTATAATGA 58.044 33.333 0.00 0.00 35.10 2.57
1147 1894 9.699410 TGTCCTTCTTGTGGAAATTATAATGAT 57.301 29.630 0.00 0.00 35.10 2.45
1217 1996 9.965902 ATTATTACCTCTGTTTCAAACATCTCT 57.034 29.630 2.71 0.00 41.26 3.10
1221 2000 9.871238 TTACCTCTGTTTCAAACATCTCTATAC 57.129 33.333 2.71 0.00 41.26 1.47
1223 2002 8.543774 ACCTCTGTTTCAAACATCTCTATACAT 58.456 33.333 2.71 0.00 41.26 2.29
1224 2003 9.039870 CCTCTGTTTCAAACATCTCTATACATC 57.960 37.037 2.71 0.00 41.26 3.06
1225 2004 8.948631 TCTGTTTCAAACATCTCTATACATCC 57.051 34.615 2.71 0.00 41.26 3.51
1226 2005 8.539544 TCTGTTTCAAACATCTCTATACATCCA 58.460 33.333 2.71 0.00 41.26 3.41
1227 2006 9.334947 CTGTTTCAAACATCTCTATACATCCAT 57.665 33.333 2.71 0.00 41.26 3.41
1260 2039 5.966742 ATCTAAGACAAGCTTTTTGGGAC 57.033 39.130 0.00 0.00 38.05 4.46
1264 2043 1.679153 GACAAGCTTTTTGGGACGGAA 59.321 47.619 0.00 0.00 0.00 4.30
1265 2044 2.100087 GACAAGCTTTTTGGGACGGAAA 59.900 45.455 0.00 0.00 0.00 3.13
1266 2045 2.498078 ACAAGCTTTTTGGGACGGAAAA 59.502 40.909 0.00 0.00 0.00 2.29
1268 2047 3.452755 AGCTTTTTGGGACGGAAAAAG 57.547 42.857 11.59 11.59 46.40 2.27
1279 2058 6.844254 TGGGACGGAAAAAGTATAAAATTCG 58.156 36.000 0.00 0.00 0.00 3.34
1306 2086 8.156994 ACAATCAATTTCCATCTTTTTGTTGG 57.843 30.769 0.00 0.00 36.98 3.77
1315 2095 8.528044 TTCCATCTTTTTGTTGGTAAGTACTT 57.472 30.769 13.68 13.68 36.97 2.24
1323 2103 3.256631 TGTTGGTAAGTACTTCCTCCGTC 59.743 47.826 12.39 10.30 0.00 4.79
1324 2104 3.159213 TGGTAAGTACTTCCTCCGTCA 57.841 47.619 12.39 0.00 0.00 4.35
1326 2106 2.821969 GGTAAGTACTTCCTCCGTCACA 59.178 50.000 12.39 0.00 0.00 3.58
1327 2107 3.446516 GGTAAGTACTTCCTCCGTCACAT 59.553 47.826 12.39 0.00 0.00 3.21
1336 2116 7.834881 ACTTCCTCCGTCACATAATATAAGA 57.165 36.000 0.00 0.00 0.00 2.10
1337 2117 7.887381 ACTTCCTCCGTCACATAATATAAGAG 58.113 38.462 0.00 0.00 0.00 2.85
1338 2118 6.268825 TCCTCCGTCACATAATATAAGAGC 57.731 41.667 0.00 0.00 0.00 4.09
1339 2119 5.096169 CCTCCGTCACATAATATAAGAGCG 58.904 45.833 0.00 0.00 0.00 5.03
1343 2123 6.982141 TCCGTCACATAATATAAGAGCGTTTT 59.018 34.615 0.00 0.00 0.00 2.43
1344 2124 7.493320 TCCGTCACATAATATAAGAGCGTTTTT 59.507 33.333 0.00 0.00 0.00 1.94
1345 2125 7.582679 CCGTCACATAATATAAGAGCGTTTTTG 59.417 37.037 0.00 0.00 0.00 2.44
1346 2126 8.325282 CGTCACATAATATAAGAGCGTTTTTGA 58.675 33.333 0.00 0.00 0.00 2.69
1347 2127 9.422196 GTCACATAATATAAGAGCGTTTTTGAC 57.578 33.333 0.00 0.00 0.00 3.18
1348 2128 9.157104 TCACATAATATAAGAGCGTTTTTGACA 57.843 29.630 0.00 0.00 0.00 3.58
1349 2129 9.210426 CACATAATATAAGAGCGTTTTTGACAC 57.790 33.333 0.00 0.00 0.00 3.67
1354 2134 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
1357 2137 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
1373 2234 4.632538 GTGTAGTGCCAAAAACACTCTT 57.367 40.909 0.00 0.00 45.06 2.85
1379 2240 9.727859 TGTAGTGCCAAAAACACTCTTATATTA 57.272 29.630 0.00 0.00 45.06 0.98
1382 2243 9.461312 AGTGCCAAAAACACTCTTATATTATGA 57.539 29.630 0.00 0.00 45.06 2.15
1383 2244 9.722056 GTGCCAAAAACACTCTTATATTATGAG 57.278 33.333 0.00 0.00 35.12 2.90
1390 2251 9.751542 AAACACTCTTATATTATGAGACGAAGG 57.248 33.333 0.00 0.00 34.90 3.46
1393 2254 8.577296 CACTCTTATATTATGAGACGAAGGGAA 58.423 37.037 0.00 0.00 34.90 3.97
1394 2255 9.315363 ACTCTTATATTATGAGACGAAGGGAAT 57.685 33.333 0.00 0.00 34.90 3.01
1409 2270 9.807649 GACGAAGGGAATACTAGTTGTATAAAA 57.192 33.333 0.00 0.00 40.69 1.52
1410 2271 9.813446 ACGAAGGGAATACTAGTTGTATAAAAG 57.187 33.333 0.00 0.00 40.69 2.27
1411 2272 9.813446 CGAAGGGAATACTAGTTGTATAAAAGT 57.187 33.333 0.00 0.00 40.69 2.66
1429 2290 6.567769 AAAAGTTGTACAATCAAAACTGCG 57.432 33.333 12.26 0.00 33.30 5.18
1441 2302 3.115554 CAAAACTGCGTCTTTCTTTGGG 58.884 45.455 0.00 0.00 0.00 4.12
1480 2341 2.844946 TGTCCAAACTGCATCTTTCGA 58.155 42.857 0.00 0.00 0.00 3.71
1483 2344 2.749076 TCCAAACTGCATCTTTCGATGG 59.251 45.455 4.68 0.00 45.72 3.51
1519 2380 8.017418 ACAAAATTTGTGTCTTTCTATTGGGA 57.983 30.769 10.91 0.00 43.48 4.37
1526 2387 7.786046 TGTGTCTTTCTATTGGGAAGTACTA 57.214 36.000 0.00 0.00 0.00 1.82
1528 2389 6.750963 GTGTCTTTCTATTGGGAAGTACTACG 59.249 42.308 0.00 0.00 0.00 3.51
1529 2390 6.435277 TGTCTTTCTATTGGGAAGTACTACGT 59.565 38.462 0.00 0.00 0.00 3.57
1531 2392 8.628280 GTCTTTCTATTGGGAAGTACTACGTAT 58.372 37.037 0.00 0.00 0.00 3.06
1572 2433 9.918630 AATCAAAATTGTATCTTTCTGTGGAAG 57.081 29.630 0.00 0.00 32.61 3.46
1573 2434 8.463930 TCAAAATTGTATCTTTCTGTGGAAGT 57.536 30.769 0.00 0.00 32.61 3.01
1574 2435 9.567776 TCAAAATTGTATCTTTCTGTGGAAGTA 57.432 29.630 0.00 0.00 32.61 2.24
1586 2447 8.810652 TTTCTGTGGAAGTATAAAAATTGTGC 57.189 30.769 0.00 0.00 32.61 4.57
1587 2448 6.919721 TCTGTGGAAGTATAAAAATTGTGCC 58.080 36.000 0.00 0.00 0.00 5.01
1588 2449 6.719370 TCTGTGGAAGTATAAAAATTGTGCCT 59.281 34.615 0.00 0.00 0.00 4.75
1589 2450 7.232534 TCTGTGGAAGTATAAAAATTGTGCCTT 59.767 33.333 0.00 0.00 0.00 4.35
1590 2451 7.731054 TGTGGAAGTATAAAAATTGTGCCTTT 58.269 30.769 0.00 0.00 0.00 3.11
1591 2452 7.870445 TGTGGAAGTATAAAAATTGTGCCTTTC 59.130 33.333 0.00 0.00 0.00 2.62
1592 2453 7.330946 GTGGAAGTATAAAAATTGTGCCTTTCC 59.669 37.037 0.00 0.00 0.00 3.13
1593 2454 7.015682 TGGAAGTATAAAAATTGTGCCTTTCCA 59.984 33.333 0.00 0.00 37.45 3.53
1594 2455 8.040727 GGAAGTATAAAAATTGTGCCTTTCCAT 58.959 33.333 0.00 0.00 31.78 3.41
1595 2456 9.087424 GAAGTATAAAAATTGTGCCTTTCCATC 57.913 33.333 0.00 0.00 0.00 3.51
1596 2457 7.257722 AGTATAAAAATTGTGCCTTTCCATCG 58.742 34.615 0.00 0.00 0.00 3.84
1597 2458 3.317603 AAAATTGTGCCTTTCCATCGG 57.682 42.857 0.00 0.00 0.00 4.18
1598 2459 1.185315 AATTGTGCCTTTCCATCGGG 58.815 50.000 0.00 0.00 0.00 5.14
1599 2460 0.331278 ATTGTGCCTTTCCATCGGGA 59.669 50.000 0.00 0.00 43.03 5.14
1600 2461 0.322456 TTGTGCCTTTCCATCGGGAG 60.322 55.000 0.00 0.00 46.01 4.30
1601 2462 1.452108 GTGCCTTTCCATCGGGAGG 60.452 63.158 0.00 0.00 46.01 4.30
1602 2463 1.923395 TGCCTTTCCATCGGGAGGT 60.923 57.895 0.00 0.00 46.01 3.85
1603 2464 0.619255 TGCCTTTCCATCGGGAGGTA 60.619 55.000 0.00 0.00 46.01 3.08
1604 2465 0.765510 GCCTTTCCATCGGGAGGTAT 59.234 55.000 0.00 0.00 46.01 2.73
1605 2466 1.143073 GCCTTTCCATCGGGAGGTATT 59.857 52.381 0.00 0.00 46.01 1.89
1606 2467 2.370849 GCCTTTCCATCGGGAGGTATTA 59.629 50.000 0.00 0.00 46.01 0.98
1607 2468 3.181448 GCCTTTCCATCGGGAGGTATTAA 60.181 47.826 0.00 0.00 46.01 1.40
1608 2469 4.506802 GCCTTTCCATCGGGAGGTATTAAT 60.507 45.833 0.00 0.00 46.01 1.40
1609 2470 5.631119 CCTTTCCATCGGGAGGTATTAATT 58.369 41.667 0.00 0.00 46.01 1.40
1610 2471 6.068670 CCTTTCCATCGGGAGGTATTAATTT 58.931 40.000 0.00 0.00 46.01 1.82
1611 2472 6.549736 CCTTTCCATCGGGAGGTATTAATTTT 59.450 38.462 0.00 0.00 46.01 1.82
1612 2473 6.952773 TTCCATCGGGAGGTATTAATTTTG 57.047 37.500 0.00 0.00 46.01 2.44
1613 2474 6.008696 TCCATCGGGAGGTATTAATTTTGT 57.991 37.500 0.00 0.00 38.64 2.83
1614 2475 5.825679 TCCATCGGGAGGTATTAATTTTGTG 59.174 40.000 0.00 0.00 38.64 3.33
1615 2476 5.592688 CCATCGGGAGGTATTAATTTTGTGT 59.407 40.000 0.00 0.00 35.59 3.72
1616 2477 6.238648 CCATCGGGAGGTATTAATTTTGTGTC 60.239 42.308 0.00 0.00 35.59 3.67
1617 2478 6.057321 TCGGGAGGTATTAATTTTGTGTCT 57.943 37.500 0.00 0.00 0.00 3.41
1618 2479 6.478129 TCGGGAGGTATTAATTTTGTGTCTT 58.522 36.000 0.00 0.00 0.00 3.01
1619 2480 6.943718 TCGGGAGGTATTAATTTTGTGTCTTT 59.056 34.615 0.00 0.00 0.00 2.52
1620 2481 7.120138 TCGGGAGGTATTAATTTTGTGTCTTTC 59.880 37.037 0.00 0.00 0.00 2.62
1621 2482 7.120726 CGGGAGGTATTAATTTTGTGTCTTTCT 59.879 37.037 0.00 0.00 0.00 2.52
1622 2483 9.457436 GGGAGGTATTAATTTTGTGTCTTTCTA 57.543 33.333 0.00 0.00 0.00 2.10
1632 2493 9.574516 AATTTTGTGTCTTTCTATTGGAGTAGT 57.425 29.630 0.00 0.00 0.00 2.73
1649 2510 8.836268 TGGAGTAGTATAAACAAAATTCGTGT 57.164 30.769 0.00 0.00 0.00 4.49
1650 2511 8.928733 TGGAGTAGTATAAACAAAATTCGTGTC 58.071 33.333 0.00 0.00 0.00 3.67
1651 2512 9.148104 GGAGTAGTATAAACAAAATTCGTGTCT 57.852 33.333 0.00 0.00 0.00 3.41
1659 2520 9.755064 ATAAACAAAATTCGTGTCTTTCTATCG 57.245 29.630 0.00 0.00 0.00 2.92
1660 2521 6.165659 ACAAAATTCGTGTCTTTCTATCGG 57.834 37.500 0.00 0.00 0.00 4.18
1661 2522 5.121768 ACAAAATTCGTGTCTTTCTATCGGG 59.878 40.000 0.00 0.00 0.00 5.14
1662 2523 4.730949 AATTCGTGTCTTTCTATCGGGA 57.269 40.909 0.00 0.00 0.00 5.14
1663 2524 4.730949 ATTCGTGTCTTTCTATCGGGAA 57.269 40.909 0.00 0.00 0.00 3.97
1664 2525 3.777465 TCGTGTCTTTCTATCGGGAAG 57.223 47.619 0.00 0.00 0.00 3.46
1665 2526 3.087031 TCGTGTCTTTCTATCGGGAAGT 58.913 45.455 0.00 0.00 0.00 3.01
1666 2527 4.264253 TCGTGTCTTTCTATCGGGAAGTA 58.736 43.478 0.00 0.00 0.00 2.24
1667 2528 4.095483 TCGTGTCTTTCTATCGGGAAGTAC 59.905 45.833 0.00 0.00 0.00 2.73
1668 2529 4.096081 CGTGTCTTTCTATCGGGAAGTACT 59.904 45.833 0.00 0.00 0.00 2.73
1669 2530 5.580661 GTGTCTTTCTATCGGGAAGTACTC 58.419 45.833 0.00 0.00 0.00 2.59
1670 2531 4.643784 TGTCTTTCTATCGGGAAGTACTCC 59.356 45.833 0.00 0.00 44.54 3.85
1677 2538 3.218227 GGAAGTACTCCCTCCGCC 58.782 66.667 0.00 0.00 38.44 6.13
1678 2539 2.433146 GGAAGTACTCCCTCCGCCC 61.433 68.421 0.00 0.00 38.44 6.13
1679 2540 2.365237 AAGTACTCCCTCCGCCCC 60.365 66.667 0.00 0.00 0.00 5.80
1680 2541 3.248248 AAGTACTCCCTCCGCCCCA 62.248 63.158 0.00 0.00 0.00 4.96
1681 2542 2.686106 GTACTCCCTCCGCCCCAA 60.686 66.667 0.00 0.00 0.00 4.12
1682 2543 2.123180 TACTCCCTCCGCCCCAAA 59.877 61.111 0.00 0.00 0.00 3.28
1683 2544 1.539372 TACTCCCTCCGCCCCAAAA 60.539 57.895 0.00 0.00 0.00 2.44
1684 2545 0.917333 TACTCCCTCCGCCCCAAAAT 60.917 55.000 0.00 0.00 0.00 1.82
1685 2546 0.917333 ACTCCCTCCGCCCCAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
1686 2547 0.257616 CTCCCTCCGCCCCAAAATAA 59.742 55.000 0.00 0.00 0.00 1.40
1687 2548 0.257616 TCCCTCCGCCCCAAAATAAG 59.742 55.000 0.00 0.00 0.00 1.73
1688 2549 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.000 0.00 0.00 0.00 2.24
1689 2550 1.102978 CCTCCGCCCCAAAATAAGTG 58.897 55.000 0.00 0.00 0.00 3.16
1690 2551 1.340600 CCTCCGCCCCAAAATAAGTGA 60.341 52.381 0.00 0.00 0.00 3.41
1691 2552 2.654863 CTCCGCCCCAAAATAAGTGAT 58.345 47.619 0.00 0.00 0.00 3.06
1692 2553 2.358898 CTCCGCCCCAAAATAAGTGATG 59.641 50.000 0.00 0.00 0.00 3.07
1693 2554 2.099405 CCGCCCCAAAATAAGTGATGT 58.901 47.619 0.00 0.00 0.00 3.06
1694 2555 2.159254 CCGCCCCAAAATAAGTGATGTG 60.159 50.000 0.00 0.00 0.00 3.21
1695 2556 2.159254 CGCCCCAAAATAAGTGATGTGG 60.159 50.000 0.00 0.00 0.00 4.17
1696 2557 2.831526 GCCCCAAAATAAGTGATGTGGT 59.168 45.455 0.00 0.00 0.00 4.16
1697 2558 3.260632 GCCCCAAAATAAGTGATGTGGTT 59.739 43.478 0.00 0.00 0.00 3.67
1698 2559 4.262851 GCCCCAAAATAAGTGATGTGGTTT 60.263 41.667 0.00 0.00 0.00 3.27
1699 2560 5.744594 GCCCCAAAATAAGTGATGTGGTTTT 60.745 40.000 0.00 0.00 0.00 2.43
1700 2561 6.519213 GCCCCAAAATAAGTGATGTGGTTTTA 60.519 38.462 0.00 0.00 0.00 1.52
1701 2562 7.096551 CCCCAAAATAAGTGATGTGGTTTTAG 58.903 38.462 0.00 0.00 0.00 1.85
1702 2563 7.256154 CCCCAAAATAAGTGATGTGGTTTTAGT 60.256 37.037 0.00 0.00 0.00 2.24
1703 2564 8.147704 CCCAAAATAAGTGATGTGGTTTTAGTT 58.852 33.333 0.00 0.00 0.00 2.24
1721 2582 9.720667 GTTTTAGTTAAAACCACGTCACTTATT 57.279 29.630 13.85 0.00 45.62 1.40
1732 2593 2.671396 CGTCACTTATTTTGGGACGGAG 59.329 50.000 10.22 0.00 45.36 4.63
1829 3070 5.063880 GCGTCTTCCATGGGAAAGTATAAT 58.936 41.667 13.02 0.00 41.54 1.28
1831 3072 6.879458 GCGTCTTCCATGGGAAAGTATAATAT 59.121 38.462 13.02 0.00 41.54 1.28
1895 3142 8.985315 TGTGATGAGGCTAATAAGAAATCAAT 57.015 30.769 0.00 0.00 0.00 2.57
1958 3208 0.329261 ATAGGCTCAGCAAGTTGCCA 59.671 50.000 24.02 10.41 46.52 4.92
2093 3343 1.351017 AGGGCGGATTCTTTTGAGTCA 59.649 47.619 0.00 0.00 36.97 3.41
2109 3362 2.736721 GAGTCAAAGCATACAACGAGCA 59.263 45.455 0.00 0.00 0.00 4.26
2110 3363 3.138304 AGTCAAAGCATACAACGAGCAA 58.862 40.909 0.00 0.00 0.00 3.91
2111 3364 3.187227 AGTCAAAGCATACAACGAGCAAG 59.813 43.478 0.00 0.00 0.00 4.01
2112 3365 3.058914 GTCAAAGCATACAACGAGCAAGT 60.059 43.478 0.00 0.00 0.00 3.16
2113 3366 3.563808 TCAAAGCATACAACGAGCAAGTT 59.436 39.130 0.00 0.00 34.15 2.66
2114 3367 4.752604 TCAAAGCATACAACGAGCAAGTTA 59.247 37.500 0.00 0.00 32.35 2.24
2123 3382 6.431198 ACAACGAGCAAGTTAAAGAAAGAA 57.569 33.333 0.00 0.00 32.35 2.52
2208 3467 3.646162 TGGAAGTCTACACACCATTCAGT 59.354 43.478 0.00 0.00 0.00 3.41
2467 3738 2.556622 GAGAATCAGCGTTCCCCAAAAA 59.443 45.455 0.00 0.00 33.17 1.94
2546 3817 2.149578 CAGTCTTTGCTGGAAGTGGAG 58.850 52.381 0.00 0.00 35.30 3.86
2866 4155 2.223923 TGTTTGGCTGGCATGTTGTAAC 60.224 45.455 4.22 6.01 0.00 2.50
3054 4350 2.303890 ACCCAACCTTAAGGAACTACGG 59.696 50.000 28.52 17.86 38.49 4.02
3189 4508 4.578928 GGTGCGGGATCATTTATGTTTAGT 59.421 41.667 0.00 0.00 0.00 2.24
3770 5176 2.045045 TTGCCGGGCTTGATGGAG 60.045 61.111 21.46 0.00 0.00 3.86
3772 5178 2.825836 GCCGGGCTTGATGGAGTG 60.826 66.667 12.87 0.00 0.00 3.51
3776 5182 1.140852 CCGGGCTTGATGGAGTGATTA 59.859 52.381 0.00 0.00 0.00 1.75
3779 5185 3.737850 GGGCTTGATGGAGTGATTAGAG 58.262 50.000 0.00 0.00 0.00 2.43
3780 5186 3.389329 GGGCTTGATGGAGTGATTAGAGA 59.611 47.826 0.00 0.00 0.00 3.10
3781 5187 4.376146 GGCTTGATGGAGTGATTAGAGAC 58.624 47.826 0.00 0.00 0.00 3.36
3792 5280 7.178097 TGGAGTGATTAGAGACATAGATGATGG 59.822 40.741 0.00 0.00 40.18 3.51
3793 5281 7.178274 GGAGTGATTAGAGACATAGATGATGGT 59.822 40.741 0.00 0.00 40.18 3.55
3794 5282 7.894708 AGTGATTAGAGACATAGATGATGGTG 58.105 38.462 0.00 0.00 40.18 4.17
3797 5285 2.298446 AGAGACATAGATGATGGTGCCG 59.702 50.000 0.00 0.00 40.18 5.69
3799 5287 0.250467 ACATAGATGATGGTGCCGGC 60.250 55.000 22.73 22.73 40.18 6.13
3800 5288 0.957395 CATAGATGATGGTGCCGGCC 60.957 60.000 26.77 15.53 31.20 6.13
3824 6395 2.736721 CGCATGTACTACTTGTTGCAGT 59.263 45.455 0.00 0.00 0.00 4.40
3851 6461 3.203716 CCTTCTAAGTTTACCGGGCATC 58.796 50.000 6.32 0.00 0.00 3.91
3854 6464 4.497291 TCTAAGTTTACCGGGCATCAAT 57.503 40.909 6.32 0.00 0.00 2.57
3861 6471 1.463674 ACCGGGCATCAATTGTCTTC 58.536 50.000 6.32 0.00 0.00 2.87
3885 6495 6.595326 TCAAGATTGCTGTTAGGACAATACTG 59.405 38.462 0.00 0.00 34.28 2.74
3886 6496 6.299805 AGATTGCTGTTAGGACAATACTGA 57.700 37.500 0.00 0.00 34.28 3.41
3887 6497 6.109359 AGATTGCTGTTAGGACAATACTGAC 58.891 40.000 0.00 0.00 34.28 3.51
3888 6498 5.483685 TTGCTGTTAGGACAATACTGACT 57.516 39.130 0.00 0.00 34.85 3.41
3889 6499 4.820897 TGCTGTTAGGACAATACTGACTG 58.179 43.478 0.00 0.00 34.85 3.51
3890 6500 4.283467 TGCTGTTAGGACAATACTGACTGT 59.717 41.667 0.00 0.00 34.85 3.55
3891 6501 4.865365 GCTGTTAGGACAATACTGACTGTC 59.135 45.833 0.00 0.00 41.05 3.51
3905 6515 4.193826 TGACTGTCCTAAAGTCATCTGC 57.806 45.455 5.17 0.00 46.96 4.26
3906 6516 3.055819 TGACTGTCCTAAAGTCATCTGCC 60.056 47.826 5.17 0.00 46.96 4.85
3907 6517 3.177228 ACTGTCCTAAAGTCATCTGCCT 58.823 45.455 0.00 0.00 0.00 4.75
3908 6518 3.584848 ACTGTCCTAAAGTCATCTGCCTT 59.415 43.478 0.00 0.00 0.00 4.35
3909 6519 3.937706 CTGTCCTAAAGTCATCTGCCTTG 59.062 47.826 0.00 0.00 0.00 3.61
3910 6520 3.327757 TGTCCTAAAGTCATCTGCCTTGT 59.672 43.478 0.00 0.00 0.00 3.16
3911 6521 3.935828 GTCCTAAAGTCATCTGCCTTGTC 59.064 47.826 0.00 0.00 0.00 3.18
3912 6522 2.932614 CCTAAAGTCATCTGCCTTGTCG 59.067 50.000 0.00 0.00 0.00 4.35
3913 6523 2.839486 AAAGTCATCTGCCTTGTCGA 57.161 45.000 0.00 0.00 0.00 4.20
3914 6524 2.376808 AAGTCATCTGCCTTGTCGAG 57.623 50.000 0.00 0.00 0.00 4.04
3916 6526 0.460987 GTCATCTGCCTTGTCGAGGG 60.461 60.000 8.30 0.00 46.40 4.30
3917 6527 0.614697 TCATCTGCCTTGTCGAGGGA 60.615 55.000 8.30 4.07 46.40 4.20
3918 6528 0.467384 CATCTGCCTTGTCGAGGGAT 59.533 55.000 8.30 0.55 45.78 3.85
3919 6529 1.134280 CATCTGCCTTGTCGAGGGATT 60.134 52.381 8.30 0.00 45.78 3.01
3920 6530 0.250234 TCTGCCTTGTCGAGGGATTG 59.750 55.000 8.30 0.00 45.78 2.67
3921 6531 0.036010 CTGCCTTGTCGAGGGATTGT 60.036 55.000 8.30 0.00 45.78 2.71
3922 6532 0.036388 TGCCTTGTCGAGGGATTGTC 60.036 55.000 8.30 0.00 46.40 3.18
3923 6533 0.744771 GCCTTGTCGAGGGATTGTCC 60.745 60.000 8.30 0.00 46.40 4.02
3924 6534 0.460284 CCTTGTCGAGGGATTGTCCG 60.460 60.000 0.00 0.00 42.26 4.79
3925 6535 0.460284 CTTGTCGAGGGATTGTCCGG 60.460 60.000 0.00 0.00 37.43 5.14
3926 6536 1.189524 TTGTCGAGGGATTGTCCGGT 61.190 55.000 0.00 0.00 37.43 5.28
3927 6537 1.153628 GTCGAGGGATTGTCCGGTG 60.154 63.158 0.00 0.00 37.43 4.94
3928 6538 1.304630 TCGAGGGATTGTCCGGTGA 60.305 57.895 0.00 0.00 37.43 4.02
3929 6539 1.153628 CGAGGGATTGTCCGGTGAC 60.154 63.158 0.00 0.00 42.12 3.67
3930 6540 1.221021 GAGGGATTGTCCGGTGACC 59.779 63.158 0.00 0.00 41.01 4.02
3931 6541 1.229529 AGGGATTGTCCGGTGACCT 60.230 57.895 0.00 0.00 41.01 3.85
3932 6542 1.221021 GGGATTGTCCGGTGACCTC 59.779 63.158 0.00 0.00 41.01 3.85
3933 6543 1.221021 GGATTGTCCGGTGACCTCC 59.779 63.158 0.00 0.00 41.01 4.30
3940 6550 3.760035 CGGTGACCTCCGGAGTGG 61.760 72.222 29.25 19.00 45.88 4.00
3941 6551 3.391382 GGTGACCTCCGGAGTGGG 61.391 72.222 29.25 18.24 38.76 4.61
3942 6552 4.083862 GTGACCTCCGGAGTGGGC 62.084 72.222 29.25 19.47 38.76 5.36
3943 6553 4.316823 TGACCTCCGGAGTGGGCT 62.317 66.667 29.25 6.63 35.52 5.19
3944 6554 3.003763 GACCTCCGGAGTGGGCTT 61.004 66.667 29.25 6.68 38.76 4.35
3945 6555 2.529389 ACCTCCGGAGTGGGCTTT 60.529 61.111 29.25 2.78 38.76 3.51
3946 6556 2.125766 GACCTCCGGAGTGGGCTTTT 62.126 60.000 29.25 4.65 38.76 2.27
3947 6557 1.675641 CCTCCGGAGTGGGCTTTTG 60.676 63.158 29.25 7.44 38.76 2.44
3948 6558 1.073199 CTCCGGAGTGGGCTTTTGT 59.927 57.895 24.04 0.00 38.76 2.83
3949 6559 1.228124 TCCGGAGTGGGCTTTTGTG 60.228 57.895 0.00 0.00 38.76 3.33
3950 6560 2.644992 CGGAGTGGGCTTTTGTGC 59.355 61.111 0.00 0.00 0.00 4.57
3964 6574 0.313672 TTGTGCCGCAATTCAGGTTC 59.686 50.000 0.00 0.00 31.07 3.62
4102 6720 0.318784 ACTCACGTCTTGCTCGAACC 60.319 55.000 0.00 0.00 0.00 3.62
4163 6781 5.142061 TGTCTTTGTCGCATAAGGACTAA 57.858 39.130 0.00 0.00 35.78 2.24
4169 6787 7.606456 TCTTTGTCGCATAAGGACTAAAGAAAT 59.394 33.333 12.61 0.00 37.88 2.17
4170 6788 7.681939 TTGTCGCATAAGGACTAAAGAAATT 57.318 32.000 0.00 0.00 35.45 1.82
4175 6793 7.540745 TCGCATAAGGACTAAAGAAATTTTTGC 59.459 33.333 0.00 0.00 0.00 3.68
4347 7088 1.070376 CATCATGCGGCATTGTAGTCG 60.070 52.381 13.81 0.00 40.11 4.18
4349 7090 1.135333 TCATGCGGCATTGTAGTCGTA 59.865 47.619 13.81 0.00 39.17 3.43
4357 7098 4.497507 CGGCATTGTAGTCGTAGATGAAGA 60.498 45.833 0.00 0.00 40.67 2.87
4363 7104 9.899226 CATTGTAGTCGTAGATGAAGAATGATA 57.101 33.333 0.00 0.00 40.67 2.15
4371 7112 6.033302 CGTAGATGAAGAATGATATGCACTCG 59.967 42.308 0.00 0.00 0.00 4.18
4405 7335 6.957631 ACTTATGATGGTGTCCAATGACTTA 58.042 36.000 0.00 0.00 42.28 2.24
4428 7371 5.192327 ACATAATCTATTTTGCAGCTGGC 57.808 39.130 17.12 8.54 45.13 4.85
4455 7398 3.685139 TTGCTGGTTAGAGAGGAACAG 57.315 47.619 0.00 0.00 0.00 3.16
4506 7456 5.927281 ATTTCCTGGTTGATGGATTCAAG 57.073 39.130 0.00 0.00 44.89 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.642154 TCTAGCTCCTCTTCTACCCG 57.358 55.000 0.00 0.00 0.00 5.28
120 130 2.357034 GAGCACGCCAAGAACGGA 60.357 61.111 0.00 0.00 34.00 4.69
362 880 0.176680 TCGAGGATTTGGCTGCTCTC 59.823 55.000 0.00 0.00 31.94 3.20
417 1024 0.036765 CGATTCCCTTTCGACCCACA 60.037 55.000 0.00 0.00 38.88 4.17
570 1185 0.244994 ACCGGCGCATATCTGATCTC 59.755 55.000 10.83 0.00 0.00 2.75
605 1221 3.834799 GAGGGAGCCCGGTACACG 61.835 72.222 0.00 0.00 41.95 4.49
611 1227 4.162690 CGAAAGGAGGGAGCCCGG 62.163 72.222 0.00 0.00 41.95 5.73
612 1228 4.840005 GCGAAAGGAGGGAGCCCG 62.840 72.222 0.00 0.00 41.95 6.13
613 1229 4.491409 GGCGAAAGGAGGGAGCCC 62.491 72.222 0.00 0.00 41.81 5.19
614 1230 4.840005 CGGCGAAAGGAGGGAGCC 62.840 72.222 0.00 0.00 44.00 4.70
615 1231 4.083862 ACGGCGAAAGGAGGGAGC 62.084 66.667 16.62 0.00 0.00 4.70
616 1232 2.184579 GACGGCGAAAGGAGGGAG 59.815 66.667 16.62 0.00 0.00 4.30
617 1233 3.755628 CGACGGCGAAAGGAGGGA 61.756 66.667 16.62 0.00 40.82 4.20
620 1236 4.735132 TGGCGACGGCGAAAGGAG 62.735 66.667 18.90 0.00 41.24 3.69
621 1237 4.077184 ATGGCGACGGCGAAAGGA 62.077 61.111 18.90 0.00 41.24 3.36
622 1238 3.564027 GATGGCGACGGCGAAAGG 61.564 66.667 18.90 0.00 41.24 3.11
623 1239 3.913573 CGATGGCGACGGCGAAAG 61.914 66.667 18.90 5.16 41.24 2.62
685 1301 4.094887 TGATTGGAGCTCTTATTTTGTCGC 59.905 41.667 14.64 0.00 0.00 5.19
690 1306 6.238211 CGATTCGTGATTGGAGCTCTTATTTT 60.238 38.462 14.64 0.00 0.00 1.82
708 1324 1.344942 GAGCTGTTGCGTCGATTCGT 61.345 55.000 5.89 0.00 45.42 3.85
743 1359 1.923204 CTGACTGCGATTCTCCGAAAG 59.077 52.381 0.00 0.00 0.00 2.62
744 1360 1.996292 CTGACTGCGATTCTCCGAAA 58.004 50.000 0.00 0.00 0.00 3.46
745 1361 0.458543 GCTGACTGCGATTCTCCGAA 60.459 55.000 0.00 0.00 0.00 4.30
746 1362 1.139734 GCTGACTGCGATTCTCCGA 59.860 57.895 0.00 0.00 0.00 4.55
762 1394 3.127533 GTGGCCGCTTTGATCGCT 61.128 61.111 9.68 0.00 0.00 4.93
846 1484 3.771160 CCGGCGGCAACTAGGAGT 61.771 66.667 15.42 0.00 0.00 3.85
882 1520 1.532604 CGCCCGGGCAGAGATATACA 61.533 60.000 42.78 0.00 42.06 2.29
958 1613 3.226884 CGAGACGGATGGTTTTGGT 57.773 52.632 0.00 0.00 0.00 3.67
1073 1728 9.331466 ACTCCATGTTATCATTCCTGATAGTAT 57.669 33.333 0.00 0.00 43.48 2.12
1083 1738 6.591935 TGGTTCCTACTCCATGTTATCATTC 58.408 40.000 0.00 0.00 31.15 2.67
1092 1747 6.425210 TCTGATTATGGTTCCTACTCCATG 57.575 41.667 6.91 0.00 43.28 3.66
1154 1901 9.282569 AGATGCAATTTTTATACTTGCCAAAAA 57.717 25.926 0.00 0.00 43.54 1.94
1157 1904 8.845413 AAAGATGCAATTTTTATACTTGCCAA 57.155 26.923 0.00 0.00 43.54 4.52
1158 1905 8.845413 AAAAGATGCAATTTTTATACTTGCCA 57.155 26.923 9.11 0.00 43.54 4.92
1232 2011 8.743714 CCCAAAAAGCTTGTCTTAGATTTATCT 58.256 33.333 0.00 0.00 40.86 1.98
1233 2012 8.739972 TCCCAAAAAGCTTGTCTTAGATTTATC 58.260 33.333 0.00 0.00 32.98 1.75
1306 2086 4.715527 ATGTGACGGAGGAAGTACTTAC 57.284 45.455 10.07 10.07 0.00 2.34
1315 2095 5.106277 CGCTCTTATATTATGTGACGGAGGA 60.106 44.000 0.00 0.00 0.00 3.71
1323 2103 9.210426 GTGTCAAAAACGCTCTTATATTATGTG 57.790 33.333 0.00 0.00 35.42 3.21
1324 2104 9.162764 AGTGTCAAAAACGCTCTTATATTATGT 57.837 29.630 0.00 0.00 45.69 2.29
1327 2107 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
1348 2128 4.777463 AGTGTTTTTGGCACTACACTAGT 58.223 39.130 20.49 0.00 46.72 2.57
1352 2132 4.632538 AAGAGTGTTTTTGGCACTACAC 57.367 40.909 14.64 14.64 45.99 2.90
1357 2137 9.722056 CTCATAATATAAGAGTGTTTTTGGCAC 57.278 33.333 0.00 0.00 37.13 5.01
1359 2139 9.937175 GTCTCATAATATAAGAGTGTTTTTGGC 57.063 33.333 0.00 0.00 0.00 4.52
1367 2228 8.112016 TCCCTTCGTCTCATAATATAAGAGTG 57.888 38.462 0.00 0.00 0.00 3.51
1379 2240 5.657302 ACAACTAGTATTCCCTTCGTCTCAT 59.343 40.000 0.00 0.00 0.00 2.90
1380 2241 5.014858 ACAACTAGTATTCCCTTCGTCTCA 58.985 41.667 0.00 0.00 0.00 3.27
1382 2243 8.757982 TTATACAACTAGTATTCCCTTCGTCT 57.242 34.615 0.00 0.00 40.52 4.18
1383 2244 9.807649 TTTTATACAACTAGTATTCCCTTCGTC 57.192 33.333 0.00 0.00 40.52 4.20
1409 2270 4.893424 ACGCAGTTTTGATTGTACAACT 57.107 36.364 11.22 0.00 37.78 3.16
1421 2282 4.081917 TTTCCCAAAGAAAGACGCAGTTTT 60.082 37.500 0.00 0.00 39.67 2.43
1546 2407 9.918630 CTTCCACAGAAAGATACAATTTTGATT 57.081 29.630 0.00 0.00 0.00 2.57
1547 2408 9.082313 ACTTCCACAGAAAGATACAATTTTGAT 57.918 29.630 0.00 0.00 0.00 2.57
1548 2409 8.463930 ACTTCCACAGAAAGATACAATTTTGA 57.536 30.769 0.00 0.00 0.00 2.69
1560 2421 8.915654 GCACAATTTTTATACTTCCACAGAAAG 58.084 33.333 0.00 0.00 0.00 2.62
1561 2422 7.870445 GGCACAATTTTTATACTTCCACAGAAA 59.130 33.333 0.00 0.00 0.00 2.52
1562 2423 7.232534 AGGCACAATTTTTATACTTCCACAGAA 59.767 33.333 0.00 0.00 0.00 3.02
1563 2424 6.719370 AGGCACAATTTTTATACTTCCACAGA 59.281 34.615 0.00 0.00 0.00 3.41
1564 2425 6.924111 AGGCACAATTTTTATACTTCCACAG 58.076 36.000 0.00 0.00 0.00 3.66
1565 2426 6.909550 AGGCACAATTTTTATACTTCCACA 57.090 33.333 0.00 0.00 0.00 4.17
1566 2427 7.330946 GGAAAGGCACAATTTTTATACTTCCAC 59.669 37.037 0.00 0.00 0.00 4.02
1567 2428 7.015682 TGGAAAGGCACAATTTTTATACTTCCA 59.984 33.333 0.00 0.00 0.00 3.53
1568 2429 7.382898 TGGAAAGGCACAATTTTTATACTTCC 58.617 34.615 0.00 0.00 0.00 3.46
1569 2430 9.087424 GATGGAAAGGCACAATTTTTATACTTC 57.913 33.333 0.00 0.00 0.00 3.01
1570 2431 7.759433 CGATGGAAAGGCACAATTTTTATACTT 59.241 33.333 0.00 0.00 0.00 2.24
1571 2432 7.257722 CGATGGAAAGGCACAATTTTTATACT 58.742 34.615 0.00 0.00 0.00 2.12
1572 2433 6.475402 CCGATGGAAAGGCACAATTTTTATAC 59.525 38.462 0.00 0.00 0.00 1.47
1573 2434 6.406400 CCCGATGGAAAGGCACAATTTTTATA 60.406 38.462 0.00 0.00 0.00 0.98
1574 2435 5.418676 CCGATGGAAAGGCACAATTTTTAT 58.581 37.500 0.00 0.00 0.00 1.40
1575 2436 4.322349 CCCGATGGAAAGGCACAATTTTTA 60.322 41.667 0.00 0.00 0.00 1.52
1576 2437 3.556843 CCCGATGGAAAGGCACAATTTTT 60.557 43.478 0.00 0.00 0.00 1.94
1577 2438 2.028203 CCCGATGGAAAGGCACAATTTT 60.028 45.455 0.00 0.00 0.00 1.82
1578 2439 1.550072 CCCGATGGAAAGGCACAATTT 59.450 47.619 0.00 0.00 0.00 1.82
1579 2440 1.185315 CCCGATGGAAAGGCACAATT 58.815 50.000 0.00 0.00 0.00 2.32
1580 2441 0.331278 TCCCGATGGAAAGGCACAAT 59.669 50.000 0.00 0.00 37.86 2.71
1581 2442 0.322456 CTCCCGATGGAAAGGCACAA 60.322 55.000 0.00 0.00 41.17 3.33
1582 2443 1.299648 CTCCCGATGGAAAGGCACA 59.700 57.895 0.00 0.00 41.17 4.57
1583 2444 1.452108 CCTCCCGATGGAAAGGCAC 60.452 63.158 0.00 0.00 41.17 5.01
1584 2445 0.619255 TACCTCCCGATGGAAAGGCA 60.619 55.000 4.68 0.00 41.17 4.75
1585 2446 0.765510 ATACCTCCCGATGGAAAGGC 59.234 55.000 4.68 0.00 41.17 4.35
1586 2447 4.699925 TTAATACCTCCCGATGGAAAGG 57.300 45.455 3.53 3.53 41.17 3.11
1587 2448 7.068226 ACAAAATTAATACCTCCCGATGGAAAG 59.932 37.037 0.00 0.00 41.17 2.62
1588 2449 6.893005 ACAAAATTAATACCTCCCGATGGAAA 59.107 34.615 0.00 0.00 41.17 3.13
1589 2450 6.320164 CACAAAATTAATACCTCCCGATGGAA 59.680 38.462 0.00 0.00 41.17 3.53
1590 2451 5.825679 CACAAAATTAATACCTCCCGATGGA 59.174 40.000 0.00 0.00 38.75 3.41
1591 2452 5.592688 ACACAAAATTAATACCTCCCGATGG 59.407 40.000 0.00 0.00 0.00 3.51
1592 2453 6.542370 AGACACAAAATTAATACCTCCCGATG 59.458 38.462 0.00 0.00 0.00 3.84
1593 2454 6.659824 AGACACAAAATTAATACCTCCCGAT 58.340 36.000 0.00 0.00 0.00 4.18
1594 2455 6.057321 AGACACAAAATTAATACCTCCCGA 57.943 37.500 0.00 0.00 0.00 5.14
1595 2456 6.753107 AAGACACAAAATTAATACCTCCCG 57.247 37.500 0.00 0.00 0.00 5.14
1596 2457 8.349568 AGAAAGACACAAAATTAATACCTCCC 57.650 34.615 0.00 0.00 0.00 4.30
1606 2467 9.574516 ACTACTCCAATAGAAAGACACAAAATT 57.425 29.630 0.00 0.00 0.00 1.82
1623 2484 9.275398 ACACGAATTTTGTTTATACTACTCCAA 57.725 29.630 0.00 0.00 0.00 3.53
1624 2485 8.836268 ACACGAATTTTGTTTATACTACTCCA 57.164 30.769 0.00 0.00 0.00 3.86
1625 2486 9.148104 AGACACGAATTTTGTTTATACTACTCC 57.852 33.333 0.00 0.00 0.00 3.85
1633 2494 9.755064 CGATAGAAAGACACGAATTTTGTTTAT 57.245 29.630 0.00 0.00 39.76 1.40
1634 2495 8.225107 CCGATAGAAAGACACGAATTTTGTTTA 58.775 33.333 0.00 0.00 39.76 2.01
1635 2496 7.075741 CCGATAGAAAGACACGAATTTTGTTT 58.924 34.615 0.00 0.00 39.76 2.83
1636 2497 6.348213 CCCGATAGAAAGACACGAATTTTGTT 60.348 38.462 0.00 0.00 39.76 2.83
1637 2498 5.121768 CCCGATAGAAAGACACGAATTTTGT 59.878 40.000 0.00 0.00 39.76 2.83
1638 2499 5.350365 TCCCGATAGAAAGACACGAATTTTG 59.650 40.000 0.00 0.00 39.76 2.44
1639 2500 5.484715 TCCCGATAGAAAGACACGAATTTT 58.515 37.500 0.00 0.00 39.76 1.82
1640 2501 5.080969 TCCCGATAGAAAGACACGAATTT 57.919 39.130 0.00 0.00 39.76 1.82
1641 2502 4.730949 TCCCGATAGAAAGACACGAATT 57.269 40.909 0.00 0.00 39.76 2.17
1642 2503 4.159879 ACTTCCCGATAGAAAGACACGAAT 59.840 41.667 0.00 0.00 39.76 3.34
1643 2504 3.508793 ACTTCCCGATAGAAAGACACGAA 59.491 43.478 0.00 0.00 39.76 3.85
1644 2505 3.087031 ACTTCCCGATAGAAAGACACGA 58.913 45.455 0.00 0.00 39.76 4.35
1645 2506 3.505464 ACTTCCCGATAGAAAGACACG 57.495 47.619 0.00 0.00 39.76 4.49
1646 2507 5.450274 GGAGTACTTCCCGATAGAAAGACAC 60.450 48.000 0.00 0.00 40.37 3.67
1647 2508 4.643784 GGAGTACTTCCCGATAGAAAGACA 59.356 45.833 0.00 0.00 40.37 3.41
1648 2509 5.185668 GGAGTACTTCCCGATAGAAAGAC 57.814 47.826 0.00 0.00 40.37 3.01
1660 2521 2.433146 GGGCGGAGGGAGTACTTCC 61.433 68.421 12.91 12.91 46.00 3.46
1661 2522 2.433146 GGGGCGGAGGGAGTACTTC 61.433 68.421 0.00 0.00 0.00 3.01
1662 2523 2.365237 GGGGCGGAGGGAGTACTT 60.365 66.667 0.00 0.00 0.00 2.24
1663 2524 2.758852 TTTGGGGCGGAGGGAGTACT 62.759 60.000 0.00 0.00 0.00 2.73
1664 2525 1.844544 TTTTGGGGCGGAGGGAGTAC 61.845 60.000 0.00 0.00 0.00 2.73
1665 2526 0.917333 ATTTTGGGGCGGAGGGAGTA 60.917 55.000 0.00 0.00 0.00 2.59
1666 2527 0.917333 TATTTTGGGGCGGAGGGAGT 60.917 55.000 0.00 0.00 0.00 3.85
1667 2528 0.257616 TTATTTTGGGGCGGAGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
1668 2529 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.000 0.00 0.00 0.00 4.20
1669 2530 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30
1670 2531 1.102978 CACTTATTTTGGGGCGGAGG 58.897 55.000 0.00 0.00 0.00 4.30
1671 2532 2.122783 TCACTTATTTTGGGGCGGAG 57.877 50.000 0.00 0.00 0.00 4.63
1672 2533 2.291282 ACATCACTTATTTTGGGGCGGA 60.291 45.455 0.00 0.00 0.00 5.54
1673 2534 2.099405 ACATCACTTATTTTGGGGCGG 58.901 47.619 0.00 0.00 0.00 6.13
1674 2535 2.159254 CCACATCACTTATTTTGGGGCG 60.159 50.000 0.00 0.00 0.00 6.13
1675 2536 2.831526 ACCACATCACTTATTTTGGGGC 59.168 45.455 0.00 0.00 36.03 5.80
1676 2537 5.482163 AAACCACATCACTTATTTTGGGG 57.518 39.130 0.00 0.00 38.65 4.96
1677 2538 7.666623 ACTAAAACCACATCACTTATTTTGGG 58.333 34.615 0.00 0.00 0.00 4.12
1698 2559 9.719279 CAAAATAAGTGACGTGGTTTTAACTAA 57.281 29.630 0.00 0.00 0.00 2.24
1699 2560 8.344098 CCAAAATAAGTGACGTGGTTTTAACTA 58.656 33.333 0.00 0.00 0.00 2.24
1700 2561 7.197703 CCAAAATAAGTGACGTGGTTTTAACT 58.802 34.615 0.00 0.00 0.00 2.24
1701 2562 6.418523 CCCAAAATAAGTGACGTGGTTTTAAC 59.581 38.462 0.00 0.00 0.00 2.01
1702 2563 6.320672 TCCCAAAATAAGTGACGTGGTTTTAA 59.679 34.615 0.00 0.00 0.00 1.52
1703 2564 5.826737 TCCCAAAATAAGTGACGTGGTTTTA 59.173 36.000 0.00 0.00 0.00 1.52
1704 2565 4.645588 TCCCAAAATAAGTGACGTGGTTTT 59.354 37.500 0.00 0.00 0.00 2.43
1705 2566 4.037089 GTCCCAAAATAAGTGACGTGGTTT 59.963 41.667 0.00 0.00 0.00 3.27
1706 2567 3.566742 GTCCCAAAATAAGTGACGTGGTT 59.433 43.478 0.00 0.00 0.00 3.67
1707 2568 3.143728 GTCCCAAAATAAGTGACGTGGT 58.856 45.455 0.00 0.00 0.00 4.16
1708 2569 2.158841 CGTCCCAAAATAAGTGACGTGG 59.841 50.000 0.00 0.00 42.68 4.94
1709 2570 2.158841 CCGTCCCAAAATAAGTGACGTG 59.841 50.000 0.00 0.00 45.29 4.49
1710 2571 2.037511 TCCGTCCCAAAATAAGTGACGT 59.962 45.455 9.16 0.00 45.29 4.34
1711 2572 2.671396 CTCCGTCCCAAAATAAGTGACG 59.329 50.000 0.00 0.00 46.05 4.35
1712 2573 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
1713 2574 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
1714 2575 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1715 2576 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1716 2577 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1717 2578 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1718 2579 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1719 2580 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1720 2581 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
1721 2582 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
1845 3086 7.975616 CAGGTGTAATTTTGATATTTCCCACAG 59.024 37.037 0.00 0.00 0.00 3.66
1865 3106 4.716784 TCTTATTAGCCTCATCACAGGTGT 59.283 41.667 0.00 0.00 35.72 4.16
1895 3142 5.932619 TTTCATACGGAGAGGAATCAGAA 57.067 39.130 0.00 0.00 0.00 3.02
1906 3153 3.555168 GCCCTCCTACATTTCATACGGAG 60.555 52.174 0.00 0.00 38.17 4.63
1958 3208 4.586001 ACAATGTTGAGCAAAAGGTCATCT 59.414 37.500 0.00 0.00 0.00 2.90
2093 3343 5.682943 TTAACTTGCTCGTTGTATGCTTT 57.317 34.783 2.13 0.00 0.00 3.51
2123 3382 5.104900 GGTGGTGTTGGACTGAACTATATCT 60.105 44.000 0.00 0.00 0.00 1.98
2208 3467 4.852134 AGTAGAATTGCATGCACAACAA 57.148 36.364 22.58 5.51 31.03 2.83
2467 3738 7.557719 ACTCCAGTTGCTTGCATATACTAAAAT 59.442 33.333 0.00 0.00 0.00 1.82
2546 3817 1.891919 TTCACTGAGTTGCGGGTGC 60.892 57.895 0.00 0.00 43.20 5.01
2776 4050 3.254166 GCTTCTGAAGTTCAAATGCAGGA 59.746 43.478 17.97 0.00 0.00 3.86
3054 4350 3.251571 GGTACAAGAGTTCACCACGATC 58.748 50.000 0.00 0.00 0.00 3.69
3138 4448 7.867403 GCACTCAATCAGGTCAAGAAAAATTTA 59.133 33.333 0.00 0.00 0.00 1.40
3139 4449 6.703165 GCACTCAATCAGGTCAAGAAAAATTT 59.297 34.615 0.00 0.00 0.00 1.82
3140 4450 6.183360 TGCACTCAATCAGGTCAAGAAAAATT 60.183 34.615 0.00 0.00 0.00 1.82
3141 4451 5.302568 TGCACTCAATCAGGTCAAGAAAAAT 59.697 36.000 0.00 0.00 0.00 1.82
3189 4508 0.178891 ACCCTTCTTCCTCTGCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
3358 4677 5.178797 AGTTTTATGTCCTCCAGATTCACG 58.821 41.667 0.00 0.00 0.00 4.35
3423 4742 1.186200 TCTCTCCAATGTCCACTCCG 58.814 55.000 0.00 0.00 0.00 4.63
3485 4813 1.153429 GGGAAGTGAATCCGGACCG 60.153 63.158 6.12 6.99 40.62 4.79
3486 4814 1.153429 CGGGAAGTGAATCCGGACC 60.153 63.158 6.12 0.14 41.09 4.46
3668 5056 9.802039 TTTCCACTGGACAAAATATACTTACTT 57.198 29.630 0.00 0.00 0.00 2.24
3669 5057 9.975218 ATTTCCACTGGACAAAATATACTTACT 57.025 29.630 0.00 0.00 0.00 2.24
3770 5176 6.589523 GCACCATCATCTATGTCTCTAATCAC 59.410 42.308 0.00 0.00 33.34 3.06
3772 5178 6.105333 GGCACCATCATCTATGTCTCTAATC 58.895 44.000 0.00 0.00 33.34 1.75
3776 5182 2.298446 CGGCACCATCATCTATGTCTCT 59.702 50.000 0.00 0.00 33.34 3.10
3779 5185 1.800805 CCGGCACCATCATCTATGTC 58.199 55.000 0.00 0.00 33.34 3.06
3780 5186 0.250467 GCCGGCACCATCATCTATGT 60.250 55.000 24.80 0.00 33.34 2.29
3781 5187 0.957395 GGCCGGCACCATCATCTATG 60.957 60.000 30.85 0.00 35.15 2.23
3793 5281 4.168291 TACATGCGATGGCCGGCA 62.168 61.111 30.85 16.85 38.85 5.69
3794 5282 2.709125 TAGTACATGCGATGGCCGGC 62.709 60.000 21.18 21.18 38.85 6.13
3797 5285 1.867233 CAAGTAGTACATGCGATGGCC 59.133 52.381 2.52 0.00 38.85 5.36
3799 5287 3.242413 GCAACAAGTAGTACATGCGATGG 60.242 47.826 5.45 0.00 33.60 3.51
3800 5288 3.370672 TGCAACAAGTAGTACATGCGATG 59.629 43.478 5.45 4.32 36.62 3.84
3824 6395 4.020307 CCCGGTAAACTTAGAAGGGTAACA 60.020 45.833 0.00 0.00 39.74 2.41
3851 6461 6.805271 CCTAACAGCAATCTTGAAGACAATTG 59.195 38.462 3.24 3.24 35.37 2.32
3854 6464 5.470098 GTCCTAACAGCAATCTTGAAGACAA 59.530 40.000 0.00 0.00 34.65 3.18
3861 6471 6.595326 TCAGTATTGTCCTAACAGCAATCTTG 59.405 38.462 0.00 0.00 36.57 3.02
3885 6495 3.196685 AGGCAGATGACTTTAGGACAGTC 59.803 47.826 0.00 0.00 41.08 3.51
3886 6496 3.177228 AGGCAGATGACTTTAGGACAGT 58.823 45.455 0.00 0.00 0.00 3.55
3887 6497 3.902881 AGGCAGATGACTTTAGGACAG 57.097 47.619 0.00 0.00 0.00 3.51
3888 6498 3.327757 ACAAGGCAGATGACTTTAGGACA 59.672 43.478 0.00 0.00 41.49 4.02
3889 6499 3.935828 GACAAGGCAGATGACTTTAGGAC 59.064 47.826 0.00 0.00 41.49 3.85
3890 6500 3.368427 CGACAAGGCAGATGACTTTAGGA 60.368 47.826 0.00 0.00 41.49 2.94
3891 6501 2.932614 CGACAAGGCAGATGACTTTAGG 59.067 50.000 0.00 0.00 41.49 2.69
3892 6502 3.849911 TCGACAAGGCAGATGACTTTAG 58.150 45.455 0.00 0.00 41.49 1.85
3893 6503 3.368427 CCTCGACAAGGCAGATGACTTTA 60.368 47.826 0.00 0.00 41.49 1.85
3894 6504 2.613977 CCTCGACAAGGCAGATGACTTT 60.614 50.000 0.00 0.00 41.49 2.66
3895 6505 1.066573 CCTCGACAAGGCAGATGACTT 60.067 52.381 0.00 0.00 46.12 3.01
3896 6506 0.534412 CCTCGACAAGGCAGATGACT 59.466 55.000 0.00 0.00 38.67 3.41
3897 6507 0.460987 CCCTCGACAAGGCAGATGAC 60.461 60.000 0.00 0.00 44.71 3.06
3898 6508 0.614697 TCCCTCGACAAGGCAGATGA 60.615 55.000 0.00 0.00 44.71 2.92
3899 6509 0.467384 ATCCCTCGACAAGGCAGATG 59.533 55.000 0.00 0.00 44.71 2.90
3900 6510 1.134280 CAATCCCTCGACAAGGCAGAT 60.134 52.381 0.00 0.00 44.71 2.90
3901 6511 0.250234 CAATCCCTCGACAAGGCAGA 59.750 55.000 0.00 0.00 44.71 4.26
3902 6512 0.036010 ACAATCCCTCGACAAGGCAG 60.036 55.000 0.00 0.00 44.71 4.85
3903 6513 0.036388 GACAATCCCTCGACAAGGCA 60.036 55.000 0.00 0.00 44.71 4.75
3904 6514 0.744771 GGACAATCCCTCGACAAGGC 60.745 60.000 0.00 0.00 44.71 4.35
3905 6515 0.460284 CGGACAATCCCTCGACAAGG 60.460 60.000 0.00 0.00 45.77 3.61
3906 6516 0.460284 CCGGACAATCCCTCGACAAG 60.460 60.000 0.00 0.00 31.13 3.16
3907 6517 1.189524 ACCGGACAATCCCTCGACAA 61.190 55.000 9.46 0.00 31.13 3.18
3908 6518 1.608336 ACCGGACAATCCCTCGACA 60.608 57.895 9.46 0.00 31.13 4.35
3909 6519 1.153628 CACCGGACAATCCCTCGAC 60.154 63.158 9.46 0.00 31.13 4.20
3910 6520 1.304630 TCACCGGACAATCCCTCGA 60.305 57.895 9.46 0.00 31.13 4.04
3911 6521 1.153628 GTCACCGGACAATCCCTCG 60.154 63.158 9.46 0.00 43.73 4.63
3912 6522 1.221021 GGTCACCGGACAATCCCTC 59.779 63.158 9.46 0.00 46.17 4.30
3913 6523 1.229529 AGGTCACCGGACAATCCCT 60.230 57.895 9.46 0.77 46.17 4.20
3914 6524 1.221021 GAGGTCACCGGACAATCCC 59.779 63.158 9.46 0.00 46.17 3.85
3915 6525 1.221021 GGAGGTCACCGGACAATCC 59.779 63.158 9.46 4.68 46.17 3.01
3916 6526 4.934989 GGAGGTCACCGGACAATC 57.065 61.111 9.46 0.00 46.17 2.67
3930 6540 1.073199 ACAAAAGCCCACTCCGGAG 59.927 57.895 30.11 30.11 36.56 4.63
3931 6541 1.228124 CACAAAAGCCCACTCCGGA 60.228 57.895 2.93 2.93 36.56 5.14
3932 6542 2.919494 GCACAAAAGCCCACTCCGG 61.919 63.158 0.00 0.00 0.00 5.14
3933 6543 2.644992 GCACAAAAGCCCACTCCG 59.355 61.111 0.00 0.00 0.00 4.63
3941 6551 0.785979 CTGAATTGCGGCACAAAAGC 59.214 50.000 0.05 0.00 42.86 3.51
3942 6552 1.269726 ACCTGAATTGCGGCACAAAAG 60.270 47.619 0.05 0.00 42.86 2.27
3943 6553 0.749649 ACCTGAATTGCGGCACAAAA 59.250 45.000 0.05 0.00 42.86 2.44
3944 6554 0.749649 AACCTGAATTGCGGCACAAA 59.250 45.000 0.05 0.00 42.86 2.83
3945 6555 0.313672 GAACCTGAATTGCGGCACAA 59.686 50.000 0.05 0.00 44.01 3.33
3946 6556 0.537143 AGAACCTGAATTGCGGCACA 60.537 50.000 0.05 0.00 0.00 4.57
3947 6557 0.109597 CAGAACCTGAATTGCGGCAC 60.110 55.000 0.05 0.00 32.44 5.01
3948 6558 0.250684 TCAGAACCTGAATTGCGGCA 60.251 50.000 0.00 0.00 37.57 5.69
3949 6559 0.449388 CTCAGAACCTGAATTGCGGC 59.551 55.000 0.00 0.00 40.18 6.53
3950 6560 1.813513 ACTCAGAACCTGAATTGCGG 58.186 50.000 0.00 0.00 40.18 5.69
3951 6561 5.985530 TGATATACTCAGAACCTGAATTGCG 59.014 40.000 0.00 0.00 40.18 4.85
3964 6574 7.890515 TGCTCAGGAATAAGTGATATACTCAG 58.109 38.462 0.00 0.00 39.18 3.35
4026 6641 9.656040 ACTCGTATATACAACAAATTAACACCA 57.344 29.630 13.22 0.00 0.00 4.17
4102 6720 5.749462 AGATTAATGGGTCTTCCTTGTCTG 58.251 41.667 0.00 0.00 36.20 3.51
4294 6916 3.670625 TGGACCATCCGTTCTACAAAAG 58.329 45.455 0.00 0.00 40.17 2.27
4332 7015 0.812549 TCTACGACTACAATGCCGCA 59.187 50.000 0.00 0.00 0.00 5.69
4347 7088 7.087007 TCGAGTGCATATCATTCTTCATCTAC 58.913 38.462 0.00 0.00 30.09 2.59
4349 7090 6.094193 TCGAGTGCATATCATTCTTCATCT 57.906 37.500 0.00 0.00 30.09 2.90
4357 7098 6.425114 GTCCTTGTATTCGAGTGCATATCATT 59.575 38.462 0.00 0.00 0.00 2.57
4363 7104 3.895232 AGTCCTTGTATTCGAGTGCAT 57.105 42.857 0.00 0.00 0.00 3.96
4371 7112 6.483640 GGACACCATCATAAGTCCTTGTATTC 59.516 42.308 0.00 0.00 45.46 1.75
4405 7335 5.361857 AGCCAGCTGCAAAATAGATTATGTT 59.638 36.000 8.66 0.00 44.83 2.71
4428 7371 6.166984 TCCTCTCTAACCAGCAATCAATAG 57.833 41.667 0.00 0.00 0.00 1.73
4455 7398 6.735130 ACCAAAAACATCTTGTAGTTGTAGC 58.265 36.000 0.00 0.00 28.78 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.