Multiple sequence alignment - TraesCS6D01G141000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G141000 chr6D 100.000 4814 0 0 1 4814 110744393 110749206 0.000000e+00 8890
1 TraesCS6D01G141000 chr6D 82.759 290 40 9 4527 4814 110873619 110873900 2.880000e-62 250
2 TraesCS6D01G141000 chr6D 87.013 154 17 2 4195 4345 110872351 110872504 2.300000e-38 171
3 TraesCS6D01G141000 chr6B 92.452 3259 146 37 682 3889 199072915 199076124 0.000000e+00 4564
4 TraesCS6D01G141000 chr6B 96.331 845 28 3 3971 4814 199076537 199077379 0.000000e+00 1386
5 TraesCS6D01G141000 chr6B 93.578 436 25 3 1 436 199072407 199072839 0.000000e+00 647
6 TraesCS6D01G141000 chr6B 88.276 145 14 2 4199 4340 199746473 199746617 2.300000e-38 171
7 TraesCS6D01G141000 chr6B 81.019 216 31 9 4601 4814 199753030 199753237 3.860000e-36 163
8 TraesCS6D01G141000 chr6B 95.652 92 4 0 576 667 199072837 199072928 1.080000e-31 148
9 TraesCS6D01G141000 chr6A 95.921 1667 62 4 2033 3699 135065994 135067654 0.000000e+00 2697
10 TraesCS6D01G141000 chr6A 95.095 1366 61 5 683 2043 135053264 135054628 0.000000e+00 2146
11 TraesCS6D01G141000 chr6A 82.192 292 38 9 4527 4814 135229434 135229715 6.230000e-59 239
12 TraesCS6D01G141000 chr6A 87.742 155 16 3 425 578 492287054 492286902 1.380000e-40 178
13 TraesCS6D01G141000 chr3B 83.410 434 64 7 1 432 675686000 675686427 3.490000e-106 396
14 TraesCS6D01G141000 chr4B 89.726 146 12 3 434 578 648557688 648557545 2.960000e-42 183
15 TraesCS6D01G141000 chr2B 89.041 146 14 2 434 578 268011326 268011182 3.830000e-41 180
16 TraesCS6D01G141000 chr2B 87.075 147 17 2 431 576 397925159 397925304 1.070000e-36 165
17 TraesCS6D01G141000 chr7A 88.000 150 16 2 431 579 533330876 533330728 4.950000e-40 176
18 TraesCS6D01G141000 chr2A 87.671 146 16 2 434 578 46095288 46095432 8.290000e-38 169
19 TraesCS6D01G141000 chr2A 86.667 150 17 3 431 578 218121921 218122069 3.860000e-36 163
20 TraesCS6D01G141000 chr1B 87.671 146 16 2 434 578 356213761 356213905 8.290000e-38 169
21 TraesCS6D01G141000 chr4A 85.897 156 20 2 434 588 173703939 173703785 1.070000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G141000 chr6D 110744393 110749206 4813 False 8890.00 8890 100.00000 1 4814 1 chr6D.!!$F1 4813
1 TraesCS6D01G141000 chr6D 110872351 110873900 1549 False 210.50 250 84.88600 4195 4814 2 chr6D.!!$F2 619
2 TraesCS6D01G141000 chr6B 199072407 199077379 4972 False 1686.25 4564 94.50325 1 4814 4 chr6B.!!$F3 4813
3 TraesCS6D01G141000 chr6A 135065994 135067654 1660 False 2697.00 2697 95.92100 2033 3699 1 chr6A.!!$F2 1666
4 TraesCS6D01G141000 chr6A 135053264 135054628 1364 False 2146.00 2146 95.09500 683 2043 1 chr6A.!!$F1 1360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 924 0.096976 CGTTTCACGGTGCATCCATC 59.903 55.0 2.51 0.0 38.08 3.51 F
1435 1443 0.533491 TTACCGCGGTTACATCTGCT 59.467 50.0 38.94 9.8 37.54 4.24 F
3103 3153 0.179234 TCGGTGCAAGAAACACTGGA 59.821 50.0 0.00 0.0 43.29 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2027 0.540365 CTGCCCTGGCTGGAAGAAAA 60.540 55.000 12.58 0.0 42.51 2.29 R
3123 3173 1.085091 GCTGACAAGCTCACATCCTG 58.915 55.000 0.00 0.0 46.60 3.86 R
4236 4633 1.134753 CAGCTCTCTCATCGCTCAACT 59.865 52.381 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.999600 TCATAGGATCGAAGTTATCACGGTA 59.000 40.000 0.00 0.00 0.00 4.02
46 47 7.281040 AGGATCGAAGTTATCACGGTATTTA 57.719 36.000 0.00 0.00 0.00 1.40
72 73 4.807304 CGTAACTTTATCAGGTATGCGGTT 59.193 41.667 0.00 0.00 0.00 4.44
83 84 4.443394 CAGGTATGCGGTTCGTAAAGTATC 59.557 45.833 0.00 0.00 0.00 2.24
110 111 3.572604 TTTACGCAAAAATTACCGGGG 57.427 42.857 6.32 0.00 0.00 5.73
111 112 2.197283 TACGCAAAAATTACCGGGGT 57.803 45.000 6.32 0.00 0.00 4.95
112 113 2.197283 ACGCAAAAATTACCGGGGTA 57.803 45.000 6.32 0.00 0.00 3.69
113 114 2.725637 ACGCAAAAATTACCGGGGTAT 58.274 42.857 6.32 0.00 0.00 2.73
114 115 2.424246 ACGCAAAAATTACCGGGGTATG 59.576 45.455 6.32 0.00 0.00 2.39
117 118 4.618693 CGCAAAAATTACCGGGGTATGTTT 60.619 41.667 6.32 0.55 0.00 2.83
118 119 5.239351 GCAAAAATTACCGGGGTATGTTTT 58.761 37.500 6.32 12.19 33.91 2.43
119 120 5.701750 GCAAAAATTACCGGGGTATGTTTTT 59.298 36.000 18.60 18.60 38.18 1.94
159 160 9.173021 CCTATGTCAAAGTTATCATGGTGTTTA 57.827 33.333 0.00 0.00 0.00 2.01
177 178 8.313292 TGGTGTTTATACGTTAGTTATCAGGTT 58.687 33.333 0.00 0.00 0.00 3.50
182 183 8.706492 TTATACGTTAGTTATCAGGTTTGTGG 57.294 34.615 0.00 0.00 0.00 4.17
198 199 5.810074 GGTTTGTGGTGGTAAATTATCATGC 59.190 40.000 0.00 0.00 0.00 4.06
204 205 8.629158 TGTGGTGGTAAATTATCATGCTATTTC 58.371 33.333 0.00 0.00 0.00 2.17
218 219 8.322906 TCATGCTATTTCTATTGGAATTACCG 57.677 34.615 0.00 0.00 42.61 4.02
278 279 7.446931 ACAAAAGGAACAAAAATGGTGAAACTT 59.553 29.630 0.00 0.00 36.74 2.66
281 282 8.661352 AAGGAACAAAAATGGTGAAACTTATG 57.339 30.769 0.00 0.00 36.74 1.90
304 305 6.868622 TGTGCATAGTTTTTAAAACCACACT 58.131 32.000 18.94 4.33 0.00 3.55
324 325 0.617413 AGTGAGGCCATCAGTTCAGG 59.383 55.000 5.01 0.00 38.50 3.86
325 326 0.615331 GTGAGGCCATCAGTTCAGGA 59.385 55.000 5.01 0.00 39.07 3.86
436 437 9.614792 AGTCACTTAGCCTAATTGGTTATTAAG 57.385 33.333 2.44 0.00 38.35 1.85
437 438 8.837389 GTCACTTAGCCTAATTGGTTATTAAGG 58.163 37.037 2.44 0.00 38.35 2.69
438 439 8.774183 TCACTTAGCCTAATTGGTTATTAAGGA 58.226 33.333 2.44 0.00 38.35 3.36
439 440 9.057089 CACTTAGCCTAATTGGTTATTAAGGAG 57.943 37.037 0.00 0.00 38.35 3.69
440 441 7.720074 ACTTAGCCTAATTGGTTATTAAGGAGC 59.280 37.037 0.00 0.00 38.35 4.70
441 442 6.267492 AGCCTAATTGGTTATTAAGGAGCT 57.733 37.500 0.00 0.00 38.35 4.09
442 443 6.064717 AGCCTAATTGGTTATTAAGGAGCTG 58.935 40.000 0.00 0.00 38.35 4.24
443 444 5.828328 GCCTAATTGGTTATTAAGGAGCTGT 59.172 40.000 0.00 0.00 38.35 4.40
444 445 6.321435 GCCTAATTGGTTATTAAGGAGCTGTT 59.679 38.462 0.00 0.00 38.35 3.16
445 446 7.468768 GCCTAATTGGTTATTAAGGAGCTGTTC 60.469 40.741 0.00 0.00 38.35 3.18
446 447 6.436843 AATTGGTTATTAAGGAGCTGTTCG 57.563 37.500 0.00 0.00 0.00 3.95
447 448 3.869065 TGGTTATTAAGGAGCTGTTCGG 58.131 45.455 0.00 0.00 0.00 4.30
448 449 2.612672 GGTTATTAAGGAGCTGTTCGGC 59.387 50.000 0.00 0.00 0.00 5.54
449 450 3.267483 GTTATTAAGGAGCTGTTCGGCA 58.733 45.455 0.00 0.00 34.17 5.69
451 452 0.685097 TTAAGGAGCTGTTCGGCAGT 59.315 50.000 0.00 0.00 46.64 4.40
452 453 0.246635 TAAGGAGCTGTTCGGCAGTC 59.753 55.000 0.00 6.10 46.64 3.51
453 454 2.435059 GGAGCTGTTCGGCAGTCC 60.435 66.667 0.00 10.05 46.64 3.85
454 455 2.659610 GAGCTGTTCGGCAGTCCT 59.340 61.111 0.00 0.46 46.64 3.85
455 456 1.446966 GAGCTGTTCGGCAGTCCTC 60.447 63.158 0.00 5.30 46.64 3.71
456 457 2.435059 GCTGTTCGGCAGTCCTCC 60.435 66.667 9.08 0.00 46.64 4.30
457 458 3.059982 CTGTTCGGCAGTCCTCCA 58.940 61.111 0.00 0.00 40.27 3.86
458 459 1.079543 CTGTTCGGCAGTCCTCCAG 60.080 63.158 0.00 0.00 40.27 3.86
459 460 2.435059 GTTCGGCAGTCCTCCAGC 60.435 66.667 0.00 0.00 0.00 4.85
460 461 2.604686 TTCGGCAGTCCTCCAGCT 60.605 61.111 0.00 0.00 0.00 4.24
461 462 2.650116 TTCGGCAGTCCTCCAGCTC 61.650 63.158 0.00 0.00 0.00 4.09
462 463 4.154347 CGGCAGTCCTCCAGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
463 464 3.791586 GGCAGTCCTCCAGCTCCC 61.792 72.222 0.00 0.00 0.00 4.30
464 465 2.686835 GCAGTCCTCCAGCTCCCT 60.687 66.667 0.00 0.00 0.00 4.20
465 466 3.028921 GCAGTCCTCCAGCTCCCTG 62.029 68.421 0.00 0.00 38.85 4.45
466 467 1.305633 CAGTCCTCCAGCTCCCTGA 60.306 63.158 0.00 0.00 41.77 3.86
467 468 0.906756 CAGTCCTCCAGCTCCCTGAA 60.907 60.000 0.00 0.00 41.77 3.02
468 469 0.178891 AGTCCTCCAGCTCCCTGAAA 60.179 55.000 0.00 0.00 41.77 2.69
469 470 0.915364 GTCCTCCAGCTCCCTGAAAT 59.085 55.000 0.00 0.00 41.77 2.17
470 471 2.119495 GTCCTCCAGCTCCCTGAAATA 58.881 52.381 0.00 0.00 41.77 1.40
471 472 2.708325 GTCCTCCAGCTCCCTGAAATAT 59.292 50.000 0.00 0.00 41.77 1.28
472 473 2.707791 TCCTCCAGCTCCCTGAAATATG 59.292 50.000 0.00 0.00 41.77 1.78
473 474 2.707791 CCTCCAGCTCCCTGAAATATGA 59.292 50.000 0.00 0.00 41.77 2.15
474 475 3.244491 CCTCCAGCTCCCTGAAATATGAG 60.244 52.174 0.00 0.00 41.77 2.90
475 476 3.645212 CTCCAGCTCCCTGAAATATGAGA 59.355 47.826 0.00 0.00 41.77 3.27
476 477 4.040047 TCCAGCTCCCTGAAATATGAGAA 58.960 43.478 0.00 0.00 41.77 2.87
477 478 4.662179 TCCAGCTCCCTGAAATATGAGAAT 59.338 41.667 0.00 0.00 41.77 2.40
478 479 5.002516 CCAGCTCCCTGAAATATGAGAATC 58.997 45.833 0.00 0.00 41.77 2.52
479 480 5.221884 CCAGCTCCCTGAAATATGAGAATCT 60.222 44.000 0.00 0.00 41.77 2.40
480 481 5.701750 CAGCTCCCTGAAATATGAGAATCTG 59.298 44.000 0.00 0.00 41.77 2.90
481 482 4.455190 GCTCCCTGAAATATGAGAATCTGC 59.545 45.833 0.00 0.00 34.92 4.26
482 483 4.635223 TCCCTGAAATATGAGAATCTGCG 58.365 43.478 0.00 0.00 34.92 5.18
483 484 3.750130 CCCTGAAATATGAGAATCTGCGG 59.250 47.826 0.00 0.00 34.92 5.69
484 485 4.503817 CCCTGAAATATGAGAATCTGCGGA 60.504 45.833 0.00 0.00 34.92 5.54
485 486 4.689812 CCTGAAATATGAGAATCTGCGGAG 59.310 45.833 0.00 0.00 34.92 4.63
512 513 4.664150 TTTTTCCTGCTCCGTCATTTTT 57.336 36.364 0.00 0.00 0.00 1.94
513 514 5.776173 TTTTTCCTGCTCCGTCATTTTTA 57.224 34.783 0.00 0.00 0.00 1.52
514 515 5.371115 TTTTCCTGCTCCGTCATTTTTAG 57.629 39.130 0.00 0.00 0.00 1.85
515 516 2.356135 TCCTGCTCCGTCATTTTTAGC 58.644 47.619 0.00 0.00 0.00 3.09
516 517 2.027192 TCCTGCTCCGTCATTTTTAGCT 60.027 45.455 0.00 0.00 34.28 3.32
517 518 3.196901 TCCTGCTCCGTCATTTTTAGCTA 59.803 43.478 0.00 0.00 34.28 3.32
518 519 3.309954 CCTGCTCCGTCATTTTTAGCTAC 59.690 47.826 0.00 0.00 34.28 3.58
519 520 3.932710 CTGCTCCGTCATTTTTAGCTACA 59.067 43.478 0.00 0.00 34.28 2.74
520 521 4.320023 TGCTCCGTCATTTTTAGCTACAA 58.680 39.130 0.00 0.00 34.28 2.41
521 522 4.153475 TGCTCCGTCATTTTTAGCTACAAC 59.847 41.667 0.00 0.00 34.28 3.32
522 523 4.392138 GCTCCGTCATTTTTAGCTACAACT 59.608 41.667 0.00 0.00 0.00 3.16
523 524 5.446073 GCTCCGTCATTTTTAGCTACAACTC 60.446 44.000 0.00 0.00 0.00 3.01
524 525 4.933400 TCCGTCATTTTTAGCTACAACTCC 59.067 41.667 0.00 0.00 0.00 3.85
525 526 4.693566 CCGTCATTTTTAGCTACAACTCCA 59.306 41.667 0.00 0.00 0.00 3.86
526 527 5.390567 CCGTCATTTTTAGCTACAACTCCAC 60.391 44.000 0.00 0.00 0.00 4.02
527 528 5.390567 CGTCATTTTTAGCTACAACTCCACC 60.391 44.000 0.00 0.00 0.00 4.61
528 529 5.472137 GTCATTTTTAGCTACAACTCCACCA 59.528 40.000 0.00 0.00 0.00 4.17
529 530 6.016610 GTCATTTTTAGCTACAACTCCACCAA 60.017 38.462 0.00 0.00 0.00 3.67
530 531 5.761165 TTTTTAGCTACAACTCCACCAAC 57.239 39.130 0.00 0.00 0.00 3.77
531 532 4.699925 TTTAGCTACAACTCCACCAACT 57.300 40.909 0.00 0.00 0.00 3.16
532 533 4.699925 TTAGCTACAACTCCACCAACTT 57.300 40.909 0.00 0.00 0.00 2.66
533 534 3.577805 AGCTACAACTCCACCAACTTT 57.422 42.857 0.00 0.00 0.00 2.66
534 535 3.898482 AGCTACAACTCCACCAACTTTT 58.102 40.909 0.00 0.00 0.00 2.27
535 536 3.632145 AGCTACAACTCCACCAACTTTTG 59.368 43.478 0.00 0.00 0.00 2.44
536 537 3.630312 GCTACAACTCCACCAACTTTTGA 59.370 43.478 0.00 0.00 0.00 2.69
537 538 4.097286 GCTACAACTCCACCAACTTTTGAA 59.903 41.667 0.00 0.00 0.00 2.69
538 539 4.718940 ACAACTCCACCAACTTTTGAAG 57.281 40.909 0.00 0.00 0.00 3.02
539 540 3.119137 ACAACTCCACCAACTTTTGAAGC 60.119 43.478 0.00 0.00 0.00 3.86
540 541 1.676006 ACTCCACCAACTTTTGAAGCG 59.324 47.619 0.00 0.00 0.00 4.68
541 542 1.001378 CTCCACCAACTTTTGAAGCGG 60.001 52.381 0.00 0.00 0.00 5.52
542 543 1.028905 CCACCAACTTTTGAAGCGGA 58.971 50.000 4.34 0.00 0.00 5.54
543 544 1.269051 CCACCAACTTTTGAAGCGGAC 60.269 52.381 4.34 0.00 0.00 4.79
544 545 1.676006 CACCAACTTTTGAAGCGGACT 59.324 47.619 4.34 0.00 0.00 3.85
545 546 2.099098 CACCAACTTTTGAAGCGGACTT 59.901 45.455 4.34 0.00 39.43 3.01
546 547 3.314080 CACCAACTTTTGAAGCGGACTTA 59.686 43.478 4.34 0.00 35.82 2.24
547 548 3.564225 ACCAACTTTTGAAGCGGACTTAG 59.436 43.478 4.34 0.00 35.82 2.18
548 549 3.058224 CCAACTTTTGAAGCGGACTTAGG 60.058 47.826 0.00 0.00 35.82 2.69
549 550 2.779506 ACTTTTGAAGCGGACTTAGGG 58.220 47.619 0.00 0.00 35.82 3.53
550 551 2.370849 ACTTTTGAAGCGGACTTAGGGA 59.629 45.455 0.00 0.00 35.82 4.20
551 552 2.762535 TTTGAAGCGGACTTAGGGAG 57.237 50.000 0.00 0.00 35.82 4.30
552 553 0.249398 TTGAAGCGGACTTAGGGAGC 59.751 55.000 0.00 0.00 35.82 4.70
553 554 1.227002 GAAGCGGACTTAGGGAGCG 60.227 63.158 0.00 0.00 35.82 5.03
554 555 3.372554 AAGCGGACTTAGGGAGCGC 62.373 63.158 0.00 0.00 37.20 5.92
556 557 3.515286 CGGACTTAGGGAGCGCGA 61.515 66.667 12.10 0.00 0.00 5.87
557 558 2.413765 GGACTTAGGGAGCGCGAG 59.586 66.667 12.10 0.00 0.00 5.03
558 559 2.119655 GGACTTAGGGAGCGCGAGA 61.120 63.158 12.10 0.00 0.00 4.04
559 560 1.357334 GACTTAGGGAGCGCGAGAG 59.643 63.158 12.10 0.00 0.00 3.20
560 561 1.378124 GACTTAGGGAGCGCGAGAGT 61.378 60.000 12.10 1.40 0.00 3.24
561 562 1.357334 CTTAGGGAGCGCGAGAGTC 59.643 63.158 12.10 0.00 0.00 3.36
562 563 1.077644 TTAGGGAGCGCGAGAGTCT 60.078 57.895 12.10 0.00 0.00 3.24
563 564 1.096386 TTAGGGAGCGCGAGAGTCTC 61.096 60.000 12.10 10.33 33.95 3.36
564 565 2.944409 TAGGGAGCGCGAGAGTCTCC 62.944 65.000 18.17 18.17 45.67 3.71
565 566 4.244802 GGAGCGCGAGAGTCTCCG 62.245 72.222 12.10 20.25 40.90 4.63
566 567 3.196394 GAGCGCGAGAGTCTCCGA 61.196 66.667 25.64 0.00 0.00 4.55
567 568 2.746671 AGCGCGAGAGTCTCCGAA 60.747 61.111 25.64 0.00 0.00 4.30
568 569 2.577378 GCGCGAGAGTCTCCGAAC 60.577 66.667 25.64 11.67 0.00 3.95
569 570 2.868196 CGCGAGAGTCTCCGAACA 59.132 61.111 20.03 0.00 0.00 3.18
570 571 1.209383 CGCGAGAGTCTCCGAACAA 59.791 57.895 20.03 0.00 0.00 2.83
571 572 0.794981 CGCGAGAGTCTCCGAACAAG 60.795 60.000 20.03 5.20 0.00 3.16
572 573 1.073768 GCGAGAGTCTCCGAACAAGC 61.074 60.000 14.61 6.39 0.00 4.01
573 574 0.456995 CGAGAGTCTCCGAACAAGCC 60.457 60.000 14.61 0.00 0.00 4.35
574 575 0.108567 GAGAGTCTCCGAACAAGCCC 60.109 60.000 9.15 0.00 0.00 5.19
575 576 0.543174 AGAGTCTCCGAACAAGCCCT 60.543 55.000 0.00 0.00 0.00 5.19
576 577 1.183549 GAGTCTCCGAACAAGCCCTA 58.816 55.000 0.00 0.00 0.00 3.53
577 578 1.549170 GAGTCTCCGAACAAGCCCTAA 59.451 52.381 0.00 0.00 0.00 2.69
578 579 1.550976 AGTCTCCGAACAAGCCCTAAG 59.449 52.381 0.00 0.00 0.00 2.18
646 647 0.179156 GCGCAAGTTGCATGCATACT 60.179 50.000 26.56 22.51 45.36 2.12
654 655 6.238456 GCAAGTTGCATGCATACTATACTCAA 60.238 38.462 23.37 0.00 44.26 3.02
655 656 7.521099 GCAAGTTGCATGCATACTATACTCAAT 60.521 37.037 23.37 3.05 44.26 2.57
656 657 8.992073 CAAGTTGCATGCATACTATACTCAATA 58.008 33.333 23.37 0.00 0.00 1.90
657 658 8.539770 AGTTGCATGCATACTATACTCAATAC 57.460 34.615 23.37 11.15 0.00 1.89
658 659 8.370940 AGTTGCATGCATACTATACTCAATACT 58.629 33.333 23.37 13.37 0.00 2.12
659 660 8.993121 GTTGCATGCATACTATACTCAATACTT 58.007 33.333 23.37 0.00 0.00 2.24
660 661 8.538409 TGCATGCATACTATACTCAATACTTG 57.462 34.615 18.46 0.00 0.00 3.16
661 662 7.118245 TGCATGCATACTATACTCAATACTTGC 59.882 37.037 18.46 0.00 0.00 4.01
662 663 7.118245 GCATGCATACTATACTCAATACTTGCA 59.882 37.037 14.21 0.00 40.23 4.08
663 664 9.159364 CATGCATACTATACTCAATACTTGCAT 57.841 33.333 0.00 0.00 45.10 3.96
664 665 8.763049 TGCATACTATACTCAATACTTGCATC 57.237 34.615 0.00 0.00 32.01 3.91
665 666 8.588472 TGCATACTATACTCAATACTTGCATCT 58.412 33.333 0.00 0.00 32.01 2.90
666 667 9.429359 GCATACTATACTCAATACTTGCATCTT 57.571 33.333 0.00 0.00 0.00 2.40
680 681 3.110447 GCATCTTTGCCCTCAAAAACA 57.890 42.857 0.00 0.00 43.38 2.83
681 682 3.465871 GCATCTTTGCCCTCAAAAACAA 58.534 40.909 0.00 0.00 43.38 2.83
715 716 0.256752 CATTCCATGACCAGAGGCCA 59.743 55.000 5.01 0.00 0.00 5.36
795 796 4.840005 TGGTGCACGCCGTTGACA 62.840 61.111 11.45 0.00 0.00 3.58
921 922 3.649096 CGTTTCACGGTGCATCCA 58.351 55.556 2.51 0.00 38.08 3.41
922 923 2.170738 CGTTTCACGGTGCATCCAT 58.829 52.632 2.51 0.00 38.08 3.41
923 924 0.096976 CGTTTCACGGTGCATCCATC 59.903 55.000 2.51 0.00 38.08 3.51
1169 1174 1.470979 CCTCATGTACCAGGTGCGTAC 60.471 57.143 0.76 0.00 37.25 3.67
1176 1181 2.803670 CAGGTGCGTACGTGTCCG 60.804 66.667 17.90 9.26 37.78 4.79
1191 1196 3.209097 CCGGCCCGGCTGTTATTG 61.209 66.667 10.42 0.00 41.17 1.90
1344 1352 4.003648 AGGTAGTTGCTCAAATTCCTTCG 58.996 43.478 3.02 0.00 33.42 3.79
1431 1439 2.304428 GCCTTACCGCGGTTACATC 58.696 57.895 38.94 18.00 0.00 3.06
1435 1443 0.533491 TTACCGCGGTTACATCTGCT 59.467 50.000 38.94 9.80 37.54 4.24
1450 1458 2.181777 GCTCAGGTGATCGCGACA 59.818 61.111 12.93 9.33 0.00 4.35
1473 1481 4.640789 AGACGAAGATATGTCTGGTGAC 57.359 45.455 0.00 0.00 43.52 3.67
1534 1542 3.947612 AGATGGGCATCTTCATCAAGT 57.052 42.857 0.00 0.00 45.31 3.16
1559 1569 5.690865 ACAGTTCTTGGTTATTGTTCAGGA 58.309 37.500 0.00 0.00 0.00 3.86
1576 1587 7.291566 TGTTCAGGAGGTTTTTCTTATGGTTA 58.708 34.615 0.00 0.00 0.00 2.85
1669 1680 4.847198 TGATTGATGCTGTGGACTATTGT 58.153 39.130 0.00 0.00 0.00 2.71
1709 1720 3.588842 TCACAGGGATCTCAAGGTCAATT 59.411 43.478 0.00 0.00 0.00 2.32
1732 1743 7.546250 TTTATTCTCATTCTCCCCTAGCTAG 57.454 40.000 14.20 14.20 0.00 3.42
1976 1988 5.121298 TGAGCTCATCTCATTTCAGTTTTCG 59.879 40.000 13.74 0.00 46.34 3.46
2015 2027 5.302568 TCAACTCCAAAACTTTGCATCTGAT 59.697 36.000 0.00 0.00 36.86 2.90
2142 2181 2.823154 GGCATGGCCTAACTACACAAAA 59.177 45.455 8.35 0.00 46.69 2.44
2331 2370 5.815581 ACAGAAGGGTAAGCATAAACATCA 58.184 37.500 0.00 0.00 0.00 3.07
2332 2371 6.245408 ACAGAAGGGTAAGCATAAACATCAA 58.755 36.000 0.00 0.00 0.00 2.57
2403 2442 1.317611 CAACTGACAACTATCGTCGCG 59.682 52.381 0.00 0.00 36.11 5.87
2560 2601 2.263077 CTAGCACGGTCATCTGACAAC 58.737 52.381 12.10 0.00 46.47 3.32
2651 2701 5.575157 TCAGTAAGGAGAACTGAGAGTGAT 58.425 41.667 1.92 0.00 46.38 3.06
2652 2702 6.722328 TCAGTAAGGAGAACTGAGAGTGATA 58.278 40.000 1.92 0.00 46.38 2.15
2653 2703 7.175797 TCAGTAAGGAGAACTGAGAGTGATAA 58.824 38.462 1.92 0.00 46.38 1.75
2654 2704 7.836685 TCAGTAAGGAGAACTGAGAGTGATAAT 59.163 37.037 1.92 0.00 46.38 1.28
2655 2705 7.920151 CAGTAAGGAGAACTGAGAGTGATAATG 59.080 40.741 0.00 0.00 45.89 1.90
2656 2706 5.867903 AGGAGAACTGAGAGTGATAATGG 57.132 43.478 0.00 0.00 0.00 3.16
2657 2707 5.276440 AGGAGAACTGAGAGTGATAATGGT 58.724 41.667 0.00 0.00 0.00 3.55
2658 2708 5.128499 AGGAGAACTGAGAGTGATAATGGTG 59.872 44.000 0.00 0.00 0.00 4.17
2659 2709 5.127845 GGAGAACTGAGAGTGATAATGGTGA 59.872 44.000 0.00 0.00 0.00 4.02
2772 2822 8.456124 ACATACCCACATATTAATTTCCTCCAT 58.544 33.333 0.00 0.00 0.00 3.41
2799 2849 4.651778 CACCAGTCATTTCCTACCTTCAA 58.348 43.478 0.00 0.00 0.00 2.69
2937 2987 1.202330 CTCTTCCAGGAGCAGGTCAT 58.798 55.000 1.20 0.00 0.00 3.06
2939 2989 2.768527 CTCTTCCAGGAGCAGGTCATTA 59.231 50.000 1.20 0.00 0.00 1.90
2979 3029 8.055279 ACTTTGTTCCATATGTATTTGACCTG 57.945 34.615 1.24 0.00 0.00 4.00
3011 3061 6.382919 AATGGGTCTAGCTTGTACCTAAAA 57.617 37.500 13.31 2.81 33.59 1.52
3103 3153 0.179234 TCGGTGCAAGAAACACTGGA 59.821 50.000 0.00 0.00 43.29 3.86
3123 3173 0.950116 GATAATCACAGCTGCAGCCC 59.050 55.000 34.39 9.35 43.38 5.19
3124 3174 0.256752 ATAATCACAGCTGCAGCCCA 59.743 50.000 34.39 16.46 43.38 5.36
3174 3224 2.487986 GGCAGCTCCATGGTAATTAGCT 60.488 50.000 17.02 17.02 44.08 3.32
3291 3341 2.613133 GCTTCAGGACATCAGATTGCTC 59.387 50.000 0.00 0.00 0.00 4.26
3352 3402 3.492102 AGTGCCGTGCCATATATTCTT 57.508 42.857 0.00 0.00 0.00 2.52
3415 3465 2.044650 AATGCCACTGGATGCGCT 60.045 55.556 9.73 0.00 0.00 5.92
3549 3599 1.073722 CCAGGTGACACCAGCACAT 59.926 57.895 26.30 1.35 41.95 3.21
3665 3715 6.437928 CAGTCTGATCTTATCTCGAGGAAAG 58.562 44.000 13.56 15.64 0.00 2.62
3688 3738 6.175471 AGATGATGCACAGTTTACTGATGAA 58.825 36.000 16.31 6.31 46.59 2.57
3734 3789 0.590195 CAGTTCTGCACAAGCCTGTC 59.410 55.000 0.00 0.00 41.13 3.51
3785 3840 1.282738 TGGCAGCTCATCAGATTTGGA 59.717 47.619 0.00 0.00 0.00 3.53
3793 3848 3.944015 CTCATCAGATTTGGAGACCAACC 59.056 47.826 2.53 0.00 43.82 3.77
3799 3854 2.358322 TTTGGAGACCAACCAACTCC 57.642 50.000 0.00 0.00 43.82 3.85
3800 3855 0.476771 TTGGAGACCAACCAACTCCC 59.523 55.000 0.00 0.00 46.57 4.30
3801 3856 0.696143 TGGAGACCAACCAACTCCCA 60.696 55.000 0.00 0.00 46.57 4.37
3802 3857 0.476771 GGAGACCAACCAACTCCCAA 59.523 55.000 0.00 0.00 42.84 4.12
3803 3858 1.605753 GAGACCAACCAACTCCCAAC 58.394 55.000 0.00 0.00 0.00 3.77
3804 3859 1.143073 GAGACCAACCAACTCCCAACT 59.857 52.381 0.00 0.00 0.00 3.16
3805 3860 1.143073 AGACCAACCAACTCCCAACTC 59.857 52.381 0.00 0.00 0.00 3.01
3806 3861 1.143073 GACCAACCAACTCCCAACTCT 59.857 52.381 0.00 0.00 0.00 3.24
3824 3879 7.995488 CCCAACTCTTGAGTAAAGGATGATTAT 59.005 37.037 14.35 0.00 36.46 1.28
3898 3961 1.374758 GCTACGCTGAGCAGTTGGT 60.375 57.895 4.88 0.00 42.36 3.67
3899 3962 0.951040 GCTACGCTGAGCAGTTGGTT 60.951 55.000 4.88 0.00 42.36 3.67
3900 3963 1.071605 CTACGCTGAGCAGTTGGTTC 58.928 55.000 4.88 0.00 0.00 3.62
3901 3964 0.679505 TACGCTGAGCAGTTGGTTCT 59.320 50.000 4.88 0.00 0.00 3.01
3903 3966 1.621301 CGCTGAGCAGTTGGTTCTCG 61.621 60.000 4.88 0.00 0.00 4.04
3904 3967 0.319900 GCTGAGCAGTTGGTTCTCGA 60.320 55.000 0.00 0.00 0.00 4.04
3905 3968 1.873903 GCTGAGCAGTTGGTTCTCGAA 60.874 52.381 0.00 0.00 0.00 3.71
3906 3969 2.064762 CTGAGCAGTTGGTTCTCGAAG 58.935 52.381 0.00 0.00 0.00 3.79
3907 3970 1.686587 TGAGCAGTTGGTTCTCGAAGA 59.313 47.619 0.00 0.00 0.00 2.87
3908 3971 2.300152 TGAGCAGTTGGTTCTCGAAGAT 59.700 45.455 0.00 0.00 33.89 2.40
3909 3972 3.244215 TGAGCAGTTGGTTCTCGAAGATT 60.244 43.478 0.00 0.00 33.89 2.40
3910 3973 3.070018 AGCAGTTGGTTCTCGAAGATTG 58.930 45.455 0.00 0.00 33.89 2.67
3911 3974 2.808543 GCAGTTGGTTCTCGAAGATTGT 59.191 45.455 0.00 0.00 33.89 2.71
3912 3975 3.994392 GCAGTTGGTTCTCGAAGATTGTA 59.006 43.478 0.00 0.00 33.89 2.41
3913 3976 4.451096 GCAGTTGGTTCTCGAAGATTGTAA 59.549 41.667 0.00 0.00 33.89 2.41
3914 3977 5.122396 GCAGTTGGTTCTCGAAGATTGTAAT 59.878 40.000 0.00 0.00 33.89 1.89
3915 3978 6.537566 CAGTTGGTTCTCGAAGATTGTAATG 58.462 40.000 0.00 0.00 33.89 1.90
3916 3979 5.122396 AGTTGGTTCTCGAAGATTGTAATGC 59.878 40.000 0.00 0.00 33.89 3.56
3917 3980 4.832248 TGGTTCTCGAAGATTGTAATGCT 58.168 39.130 0.00 0.00 33.89 3.79
3918 3981 4.631377 TGGTTCTCGAAGATTGTAATGCTG 59.369 41.667 0.00 0.00 33.89 4.41
3919 3982 4.494855 GGTTCTCGAAGATTGTAATGCTGC 60.495 45.833 0.00 0.00 33.89 5.25
3920 3983 3.198068 TCTCGAAGATTGTAATGCTGCC 58.802 45.455 0.00 0.00 33.89 4.85
3921 3984 2.288666 TCGAAGATTGTAATGCTGCCC 58.711 47.619 0.00 0.00 0.00 5.36
3922 3985 2.092968 TCGAAGATTGTAATGCTGCCCT 60.093 45.455 0.00 0.00 0.00 5.19
3923 3986 2.032550 CGAAGATTGTAATGCTGCCCTG 59.967 50.000 0.00 0.00 0.00 4.45
3924 3987 2.062971 AGATTGTAATGCTGCCCTGG 57.937 50.000 0.00 0.00 0.00 4.45
3925 3988 1.285962 AGATTGTAATGCTGCCCTGGT 59.714 47.619 0.00 0.00 0.00 4.00
3926 3989 2.102578 GATTGTAATGCTGCCCTGGTT 58.897 47.619 0.00 0.00 0.00 3.67
3927 3990 2.889170 TTGTAATGCTGCCCTGGTTA 57.111 45.000 0.00 0.00 0.00 2.85
3928 3991 2.889170 TGTAATGCTGCCCTGGTTAA 57.111 45.000 0.00 0.00 0.00 2.01
3929 3992 3.380471 TGTAATGCTGCCCTGGTTAAT 57.620 42.857 0.00 0.00 0.00 1.40
3930 3993 3.287222 TGTAATGCTGCCCTGGTTAATC 58.713 45.455 0.00 0.00 0.00 1.75
3931 3994 2.530460 AATGCTGCCCTGGTTAATCA 57.470 45.000 0.00 0.00 0.00 2.57
3932 3995 2.530460 ATGCTGCCCTGGTTAATCAA 57.470 45.000 0.00 0.00 0.00 2.57
3933 3996 2.530460 TGCTGCCCTGGTTAATCAAT 57.470 45.000 0.00 0.00 0.00 2.57
3934 3997 3.660970 TGCTGCCCTGGTTAATCAATA 57.339 42.857 0.00 0.00 0.00 1.90
3935 3998 3.554934 TGCTGCCCTGGTTAATCAATAG 58.445 45.455 0.00 0.00 0.00 1.73
3936 3999 3.201930 TGCTGCCCTGGTTAATCAATAGA 59.798 43.478 0.00 0.00 0.00 1.98
3937 4000 4.207165 GCTGCCCTGGTTAATCAATAGAA 58.793 43.478 0.00 0.00 0.00 2.10
3938 4001 4.829492 GCTGCCCTGGTTAATCAATAGAAT 59.171 41.667 0.00 0.00 0.00 2.40
3939 4002 5.048434 GCTGCCCTGGTTAATCAATAGAATC 60.048 44.000 0.00 0.00 0.00 2.52
3940 4003 6.266131 TGCCCTGGTTAATCAATAGAATCT 57.734 37.500 0.00 0.00 0.00 2.40
3941 4004 6.299141 TGCCCTGGTTAATCAATAGAATCTC 58.701 40.000 0.00 0.00 0.00 2.75
3942 4005 5.707764 GCCCTGGTTAATCAATAGAATCTCC 59.292 44.000 0.00 0.00 0.00 3.71
3943 4006 6.241645 CCCTGGTTAATCAATAGAATCTCCC 58.758 44.000 0.00 0.00 0.00 4.30
3944 4007 6.044871 CCCTGGTTAATCAATAGAATCTCCCT 59.955 42.308 0.00 0.00 0.00 4.20
3945 4008 7.421853 CCCTGGTTAATCAATAGAATCTCCCTT 60.422 40.741 0.00 0.00 0.00 3.95
3946 4009 8.001292 CCTGGTTAATCAATAGAATCTCCCTTT 58.999 37.037 0.00 0.00 0.00 3.11
3947 4010 9.413734 CTGGTTAATCAATAGAATCTCCCTTTT 57.586 33.333 0.00 0.00 0.00 2.27
3948 4011 9.408648 TGGTTAATCAATAGAATCTCCCTTTTC 57.591 33.333 0.00 0.00 0.00 2.29
3949 4012 9.634021 GGTTAATCAATAGAATCTCCCTTTTCT 57.366 33.333 0.00 0.00 36.26 2.52
3952 4015 8.744568 AATCAATAGAATCTCCCTTTTCTGTC 57.255 34.615 0.00 0.00 34.22 3.51
3953 4016 6.341316 TCAATAGAATCTCCCTTTTCTGTCG 58.659 40.000 0.00 0.00 34.22 4.35
3954 4017 2.979240 AGAATCTCCCTTTTCTGTCGC 58.021 47.619 0.00 0.00 31.15 5.19
3955 4018 2.303022 AGAATCTCCCTTTTCTGTCGCA 59.697 45.455 0.00 0.00 31.15 5.10
3956 4019 2.859165 ATCTCCCTTTTCTGTCGCAA 57.141 45.000 0.00 0.00 0.00 4.85
3957 4020 2.169832 TCTCCCTTTTCTGTCGCAAG 57.830 50.000 0.00 0.00 0.00 4.01
3958 4021 7.258587 AGAATCTCCCTTTTCTGTCGCAAGA 62.259 44.000 0.00 0.00 35.81 3.02
3959 4022 9.661886 TAGAATCTCCCTTTTCTGTCGCAAGAG 62.662 44.444 0.00 0.00 39.08 2.85
3999 4393 3.002862 TCAACAACTGAAATTCGAACCGG 59.997 43.478 0.00 0.00 0.00 5.28
4016 4410 3.950397 ACCGGAGCATCTAATTTCACAA 58.050 40.909 9.46 0.00 33.73 3.33
4058 4452 4.927267 ACCATTCCACTACAAAGGATCA 57.073 40.909 0.00 0.00 33.10 2.92
4192 4586 7.331791 GGTATTCAGAACCAAGAGTGAAGTAT 58.668 38.462 0.00 0.00 36.96 2.12
4197 4591 4.841246 AGAACCAAGAGTGAAGTATCCAGT 59.159 41.667 0.00 0.00 0.00 4.00
4283 4680 8.441311 TGCTCATACAGGGATCTAAATATCTT 57.559 34.615 0.00 0.00 0.00 2.40
4425 4823 6.629128 TGTATGCAAATCAAAATGGACGAAT 58.371 32.000 0.00 0.00 0.00 3.34
4439 4837 4.000325 TGGACGAATATCGGGCATATTTG 59.000 43.478 4.66 4.17 45.59 2.32
4450 4848 6.951062 TCGGGCATATTTGATGAATAACAA 57.049 33.333 0.00 0.00 34.06 2.83
4463 4861 9.436957 TTGATGAATAACAAGTTCTCTAGGTTC 57.563 33.333 0.00 0.00 0.00 3.62
4656 5993 8.698973 TCTCTCTAGGAAGTATTATTGGACAG 57.301 38.462 0.00 0.00 0.00 3.51
4668 6005 1.032014 TTGGACAGCCTGCAAAGAAC 58.968 50.000 0.00 0.00 34.31 3.01
4686 6026 5.613358 AGAACCAAGTAAATTTCAGAGCG 57.387 39.130 0.00 0.00 0.00 5.03
4744 6084 2.224992 TGCAGGAAAAAGAGGCATACCA 60.225 45.455 0.00 0.00 39.06 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.070149 GTATAAATACCGTGATAACTTCGATCC 57.930 37.037 0.00 0.00 0.00 3.36
46 47 6.154445 CCGCATACCTGATAAAGTTACGTAT 58.846 40.000 0.00 0.00 0.00 3.06
55 56 3.530265 ACGAACCGCATACCTGATAAA 57.470 42.857 0.00 0.00 0.00 1.40
72 73 9.465985 TTGCGTAAATATCATGATACTTTACGA 57.534 29.630 39.34 31.55 42.85 3.43
83 84 7.114247 CCCGGTAATTTTTGCGTAAATATCATG 59.886 37.037 0.00 0.00 0.00 3.07
132 133 6.957631 ACACCATGATAACTTTGACATAGGA 58.042 36.000 0.00 0.00 0.00 2.94
159 160 6.592607 CACCACAAACCTGATAACTAACGTAT 59.407 38.462 0.00 0.00 0.00 3.06
177 178 8.532186 AATAGCATGATAATTTACCACCACAA 57.468 30.769 0.00 0.00 0.00 3.33
198 199 6.710744 AGCACCGGTAATTCCAATAGAAATAG 59.289 38.462 6.87 0.00 38.21 1.73
204 205 2.290641 GCAGCACCGGTAATTCCAATAG 59.709 50.000 6.87 0.00 35.57 1.73
278 279 8.634444 AGTGTGGTTTTAAAAACTATGCACATA 58.366 29.630 16.60 0.00 0.00 2.29
281 282 8.132995 ACTAGTGTGGTTTTAAAAACTATGCAC 58.867 33.333 16.60 17.09 0.00 4.57
304 305 1.833630 CCTGAACTGATGGCCTCACTA 59.166 52.381 3.32 0.00 0.00 2.74
324 325 2.091277 CAGCGACGAGTCAAGTGAAATC 59.909 50.000 0.00 0.00 0.00 2.17
325 326 2.061773 CAGCGACGAGTCAAGTGAAAT 58.938 47.619 0.00 0.00 0.00 2.17
416 417 7.719633 CAGCTCCTTAATAACCAATTAGGCTAA 59.280 37.037 9.79 9.79 43.14 3.09
418 419 6.064717 CAGCTCCTTAATAACCAATTAGGCT 58.935 40.000 0.00 0.00 43.14 4.58
441 442 3.059982 CTGGAGGACTGCCGAACA 58.940 61.111 0.00 0.00 39.96 3.18
442 443 2.435059 GCTGGAGGACTGCCGAAC 60.435 66.667 0.00 0.00 39.96 3.95
443 444 2.604686 AGCTGGAGGACTGCCGAA 60.605 61.111 0.00 0.00 44.29 4.30
444 445 3.071206 GAGCTGGAGGACTGCCGA 61.071 66.667 0.00 0.00 44.29 5.54
445 446 4.154347 GGAGCTGGAGGACTGCCG 62.154 72.222 0.00 0.00 44.29 5.69
446 447 3.791586 GGGAGCTGGAGGACTGCC 61.792 72.222 0.00 0.00 44.29 4.85
447 448 2.686835 AGGGAGCTGGAGGACTGC 60.687 66.667 0.00 0.00 43.63 4.40
448 449 0.906756 TTCAGGGAGCTGGAGGACTG 60.907 60.000 0.00 0.00 0.00 3.51
449 450 0.178891 TTTCAGGGAGCTGGAGGACT 60.179 55.000 0.00 0.00 0.00 3.85
450 451 0.915364 ATTTCAGGGAGCTGGAGGAC 59.085 55.000 0.00 0.00 0.00 3.85
451 452 2.568546 TATTTCAGGGAGCTGGAGGA 57.431 50.000 0.00 0.00 0.00 3.71
452 453 2.707791 TCATATTTCAGGGAGCTGGAGG 59.292 50.000 0.00 0.00 0.00 4.30
453 454 3.645212 TCTCATATTTCAGGGAGCTGGAG 59.355 47.826 0.00 0.00 0.00 3.86
454 455 3.657610 TCTCATATTTCAGGGAGCTGGA 58.342 45.455 0.00 0.00 0.00 3.86
455 456 4.428294 TTCTCATATTTCAGGGAGCTGG 57.572 45.455 0.00 0.00 0.00 4.85
456 457 5.701750 CAGATTCTCATATTTCAGGGAGCTG 59.298 44.000 0.00 0.00 0.00 4.24
457 458 5.745476 GCAGATTCTCATATTTCAGGGAGCT 60.745 44.000 0.00 0.00 0.00 4.09
458 459 4.455190 GCAGATTCTCATATTTCAGGGAGC 59.545 45.833 0.00 0.00 0.00 4.70
459 460 4.689812 CGCAGATTCTCATATTTCAGGGAG 59.310 45.833 0.00 0.00 0.00 4.30
460 461 4.503817 CCGCAGATTCTCATATTTCAGGGA 60.504 45.833 0.00 0.00 0.00 4.20
461 462 3.750130 CCGCAGATTCTCATATTTCAGGG 59.250 47.826 0.00 0.00 0.00 4.45
462 463 4.635223 TCCGCAGATTCTCATATTTCAGG 58.365 43.478 0.00 0.00 0.00 3.86
463 464 4.152045 GCTCCGCAGATTCTCATATTTCAG 59.848 45.833 0.00 0.00 0.00 3.02
464 465 4.060900 GCTCCGCAGATTCTCATATTTCA 58.939 43.478 0.00 0.00 0.00 2.69
465 466 4.314121 AGCTCCGCAGATTCTCATATTTC 58.686 43.478 0.00 0.00 0.00 2.17
466 467 4.314121 GAGCTCCGCAGATTCTCATATTT 58.686 43.478 0.87 0.00 0.00 1.40
467 468 3.306641 GGAGCTCCGCAGATTCTCATATT 60.307 47.826 19.06 0.00 0.00 1.28
468 469 2.233431 GGAGCTCCGCAGATTCTCATAT 59.767 50.000 19.06 0.00 0.00 1.78
469 470 1.615883 GGAGCTCCGCAGATTCTCATA 59.384 52.381 19.06 0.00 0.00 2.15
470 471 0.392336 GGAGCTCCGCAGATTCTCAT 59.608 55.000 19.06 0.00 0.00 2.90
471 472 0.685785 AGGAGCTCCGCAGATTCTCA 60.686 55.000 26.95 0.00 42.08 3.27
472 473 0.463620 AAGGAGCTCCGCAGATTCTC 59.536 55.000 26.95 0.00 42.08 2.87
473 474 0.908198 AAAGGAGCTCCGCAGATTCT 59.092 50.000 26.95 3.86 42.08 2.40
474 475 1.743996 AAAAGGAGCTCCGCAGATTC 58.256 50.000 26.95 0.25 42.08 2.52
475 476 2.206576 AAAAAGGAGCTCCGCAGATT 57.793 45.000 26.95 12.69 42.08 2.40
476 477 3.965888 AAAAAGGAGCTCCGCAGAT 57.034 47.368 26.95 10.92 42.08 2.90
491 492 4.664150 AAAAATGACGGAGCAGGAAAAA 57.336 36.364 0.00 0.00 0.00 1.94
492 493 4.320935 GCTAAAAATGACGGAGCAGGAAAA 60.321 41.667 0.00 0.00 33.26 2.29
493 494 3.190535 GCTAAAAATGACGGAGCAGGAAA 59.809 43.478 0.00 0.00 33.26 3.13
494 495 2.747446 GCTAAAAATGACGGAGCAGGAA 59.253 45.455 0.00 0.00 33.26 3.36
495 496 2.027192 AGCTAAAAATGACGGAGCAGGA 60.027 45.455 0.00 0.00 35.55 3.86
496 497 2.359900 AGCTAAAAATGACGGAGCAGG 58.640 47.619 0.00 0.00 35.55 4.85
497 498 3.932710 TGTAGCTAAAAATGACGGAGCAG 59.067 43.478 0.00 0.00 35.55 4.24
498 499 3.932822 TGTAGCTAAAAATGACGGAGCA 58.067 40.909 0.00 0.00 35.55 4.26
499 500 4.392138 AGTTGTAGCTAAAAATGACGGAGC 59.608 41.667 0.00 0.00 0.00 4.70
500 501 5.063564 GGAGTTGTAGCTAAAAATGACGGAG 59.936 44.000 0.33 0.00 0.00 4.63
501 502 4.933400 GGAGTTGTAGCTAAAAATGACGGA 59.067 41.667 0.33 0.00 0.00 4.69
502 503 4.693566 TGGAGTTGTAGCTAAAAATGACGG 59.306 41.667 0.33 0.00 0.00 4.79
503 504 5.390567 GGTGGAGTTGTAGCTAAAAATGACG 60.391 44.000 0.33 0.00 0.00 4.35
504 505 5.472137 TGGTGGAGTTGTAGCTAAAAATGAC 59.528 40.000 0.33 0.00 0.00 3.06
505 506 5.626142 TGGTGGAGTTGTAGCTAAAAATGA 58.374 37.500 0.33 0.00 0.00 2.57
506 507 5.957842 TGGTGGAGTTGTAGCTAAAAATG 57.042 39.130 0.33 0.00 0.00 2.32
507 508 6.068670 AGTTGGTGGAGTTGTAGCTAAAAAT 58.931 36.000 0.00 0.00 0.00 1.82
508 509 5.442391 AGTTGGTGGAGTTGTAGCTAAAAA 58.558 37.500 0.00 0.00 0.00 1.94
509 510 5.043737 AGTTGGTGGAGTTGTAGCTAAAA 57.956 39.130 0.00 0.00 0.00 1.52
510 511 4.699925 AGTTGGTGGAGTTGTAGCTAAA 57.300 40.909 0.00 0.00 0.00 1.85
511 512 4.699925 AAGTTGGTGGAGTTGTAGCTAA 57.300 40.909 0.00 0.00 0.00 3.09
512 513 4.699925 AAAGTTGGTGGAGTTGTAGCTA 57.300 40.909 0.00 0.00 0.00 3.32
513 514 3.577805 AAAGTTGGTGGAGTTGTAGCT 57.422 42.857 0.00 0.00 0.00 3.32
514 515 3.630312 TCAAAAGTTGGTGGAGTTGTAGC 59.370 43.478 0.00 0.00 0.00 3.58
515 516 5.733373 GCTTCAAAAGTTGGTGGAGTTGTAG 60.733 44.000 0.00 0.00 0.00 2.74
516 517 4.097286 GCTTCAAAAGTTGGTGGAGTTGTA 59.903 41.667 0.00 0.00 0.00 2.41
517 518 3.119137 GCTTCAAAAGTTGGTGGAGTTGT 60.119 43.478 0.00 0.00 0.00 3.32
518 519 3.447742 GCTTCAAAAGTTGGTGGAGTTG 58.552 45.455 0.00 0.00 0.00 3.16
519 520 2.099098 CGCTTCAAAAGTTGGTGGAGTT 59.901 45.455 0.00 0.00 0.00 3.01
520 521 1.676006 CGCTTCAAAAGTTGGTGGAGT 59.324 47.619 0.00 0.00 0.00 3.85
521 522 1.001378 CCGCTTCAAAAGTTGGTGGAG 60.001 52.381 0.00 0.00 0.00 3.86
522 523 1.028905 CCGCTTCAAAAGTTGGTGGA 58.971 50.000 0.00 0.00 0.00 4.02
523 524 1.028905 TCCGCTTCAAAAGTTGGTGG 58.971 50.000 0.00 0.00 0.00 4.61
524 525 1.676006 AGTCCGCTTCAAAAGTTGGTG 59.324 47.619 0.00 0.00 0.00 4.17
525 526 2.052782 AGTCCGCTTCAAAAGTTGGT 57.947 45.000 0.00 0.00 0.00 3.67
526 527 3.058224 CCTAAGTCCGCTTCAAAAGTTGG 60.058 47.826 0.00 0.00 36.22 3.77
527 528 3.058224 CCCTAAGTCCGCTTCAAAAGTTG 60.058 47.826 0.00 0.00 36.22 3.16
528 529 3.146847 CCCTAAGTCCGCTTCAAAAGTT 58.853 45.455 0.00 0.00 36.22 2.66
529 530 2.370849 TCCCTAAGTCCGCTTCAAAAGT 59.629 45.455 0.00 0.00 36.22 2.66
530 531 3.003480 CTCCCTAAGTCCGCTTCAAAAG 58.997 50.000 0.00 0.00 36.22 2.27
531 532 2.874457 GCTCCCTAAGTCCGCTTCAAAA 60.874 50.000 0.00 0.00 36.22 2.44
532 533 1.338769 GCTCCCTAAGTCCGCTTCAAA 60.339 52.381 0.00 0.00 36.22 2.69
533 534 0.249398 GCTCCCTAAGTCCGCTTCAA 59.751 55.000 0.00 0.00 36.22 2.69
534 535 1.898154 GCTCCCTAAGTCCGCTTCA 59.102 57.895 0.00 0.00 36.22 3.02
535 536 1.227002 CGCTCCCTAAGTCCGCTTC 60.227 63.158 0.00 0.00 36.22 3.86
536 537 2.893398 CGCTCCCTAAGTCCGCTT 59.107 61.111 0.00 0.00 38.66 4.68
537 538 3.839432 GCGCTCCCTAAGTCCGCT 61.839 66.667 0.00 0.00 41.28 5.52
539 540 3.471244 CTCGCGCTCCCTAAGTCCG 62.471 68.421 5.56 0.00 0.00 4.79
540 541 2.065906 CTCTCGCGCTCCCTAAGTCC 62.066 65.000 5.56 0.00 0.00 3.85
541 542 1.357334 CTCTCGCGCTCCCTAAGTC 59.643 63.158 5.56 0.00 0.00 3.01
542 543 1.378124 GACTCTCGCGCTCCCTAAGT 61.378 60.000 5.56 0.00 0.00 2.24
543 544 1.098712 AGACTCTCGCGCTCCCTAAG 61.099 60.000 5.56 0.00 0.00 2.18
544 545 1.077644 AGACTCTCGCGCTCCCTAA 60.078 57.895 5.56 0.00 0.00 2.69
545 546 1.524165 GAGACTCTCGCGCTCCCTA 60.524 63.158 5.56 0.00 0.00 3.53
546 547 2.826738 GAGACTCTCGCGCTCCCT 60.827 66.667 5.56 0.00 0.00 4.20
547 548 3.894947 GGAGACTCTCGCGCTCCC 61.895 72.222 16.24 1.01 41.84 4.30
548 549 4.244802 CGGAGACTCTCGCGCTCC 62.245 72.222 16.89 16.89 43.73 4.70
549 550 2.751913 TTCGGAGACTCTCGCGCTC 61.752 63.158 5.56 0.88 34.32 5.03
550 551 2.746671 TTCGGAGACTCTCGCGCT 60.747 61.111 5.56 0.00 34.32 5.92
551 552 2.577378 GTTCGGAGACTCTCGCGC 60.577 66.667 0.00 0.00 34.32 6.86
552 553 0.794981 CTTGTTCGGAGACTCTCGCG 60.795 60.000 0.00 0.00 34.32 5.87
553 554 1.073768 GCTTGTTCGGAGACTCTCGC 61.074 60.000 1.74 0.00 34.32 5.03
554 555 0.456995 GGCTTGTTCGGAGACTCTCG 60.457 60.000 1.74 4.82 34.32 4.04
555 556 0.108567 GGGCTTGTTCGGAGACTCTC 60.109 60.000 1.74 0.00 34.32 3.20
556 557 0.543174 AGGGCTTGTTCGGAGACTCT 60.543 55.000 1.74 0.00 34.32 3.24
557 558 1.183549 TAGGGCTTGTTCGGAGACTC 58.816 55.000 0.00 0.00 34.32 3.36
558 559 1.550976 CTTAGGGCTTGTTCGGAGACT 59.449 52.381 0.00 0.00 34.32 3.24
559 560 1.549170 TCTTAGGGCTTGTTCGGAGAC 59.451 52.381 0.00 0.00 34.32 3.36
560 561 1.933021 TCTTAGGGCTTGTTCGGAGA 58.067 50.000 0.00 0.00 0.00 3.71
561 562 2.622436 CTTCTTAGGGCTTGTTCGGAG 58.378 52.381 0.00 0.00 0.00 4.63
562 563 1.278127 CCTTCTTAGGGCTTGTTCGGA 59.722 52.381 0.00 0.00 37.94 4.55
563 564 1.278127 TCCTTCTTAGGGCTTGTTCGG 59.722 52.381 0.00 0.00 42.26 4.30
564 565 2.762535 TCCTTCTTAGGGCTTGTTCG 57.237 50.000 0.00 0.00 42.26 3.95
565 566 7.646548 ATTATTTCCTTCTTAGGGCTTGTTC 57.353 36.000 0.00 0.00 42.26 3.18
566 567 9.190317 CTTATTATTTCCTTCTTAGGGCTTGTT 57.810 33.333 0.00 0.00 42.26 2.83
567 568 8.336987 ACTTATTATTTCCTTCTTAGGGCTTGT 58.663 33.333 0.00 0.00 42.26 3.16
568 569 8.753497 ACTTATTATTTCCTTCTTAGGGCTTG 57.247 34.615 0.00 0.00 42.26 4.01
569 570 9.769677 AAACTTATTATTTCCTTCTTAGGGCTT 57.230 29.630 0.00 0.00 42.26 4.35
570 571 9.190317 CAAACTTATTATTTCCTTCTTAGGGCT 57.810 33.333 0.00 0.00 42.26 5.19
571 572 7.921214 GCAAACTTATTATTTCCTTCTTAGGGC 59.079 37.037 0.00 0.00 42.26 5.19
572 573 8.414003 GGCAAACTTATTATTTCCTTCTTAGGG 58.586 37.037 0.00 0.00 42.26 3.53
573 574 8.414003 GGGCAAACTTATTATTTCCTTCTTAGG 58.586 37.037 0.00 0.00 43.46 2.69
574 575 8.129211 CGGGCAAACTTATTATTTCCTTCTTAG 58.871 37.037 0.00 0.00 0.00 2.18
575 576 7.612633 ACGGGCAAACTTATTATTTCCTTCTTA 59.387 33.333 0.00 0.00 0.00 2.10
576 577 6.436218 ACGGGCAAACTTATTATTTCCTTCTT 59.564 34.615 0.00 0.00 0.00 2.52
577 578 5.949952 ACGGGCAAACTTATTATTTCCTTCT 59.050 36.000 0.00 0.00 0.00 2.85
578 579 6.203808 ACGGGCAAACTTATTATTTCCTTC 57.796 37.500 0.00 0.00 0.00 3.46
591 592 4.673320 GCGTGAAATAATAACGGGCAAACT 60.673 41.667 0.00 0.00 37.77 2.66
592 593 3.544682 GCGTGAAATAATAACGGGCAAAC 59.455 43.478 0.00 0.00 37.77 2.93
661 662 6.930722 AGTATTTGTTTTTGAGGGCAAAGATG 59.069 34.615 0.00 0.00 44.18 2.90
662 663 7.066307 AGTATTTGTTTTTGAGGGCAAAGAT 57.934 32.000 0.00 0.00 44.18 2.40
663 664 6.478512 AGTATTTGTTTTTGAGGGCAAAGA 57.521 33.333 0.00 0.00 44.18 2.52
664 665 6.511605 GCAAGTATTTGTTTTTGAGGGCAAAG 60.512 38.462 0.00 0.00 39.47 2.77
665 666 5.295540 GCAAGTATTTGTTTTTGAGGGCAAA 59.704 36.000 0.00 0.00 38.10 3.68
666 667 4.813697 GCAAGTATTTGTTTTTGAGGGCAA 59.186 37.500 0.00 0.00 36.65 4.52
667 668 4.141846 TGCAAGTATTTGTTTTTGAGGGCA 60.142 37.500 0.00 0.00 36.65 5.36
668 669 4.376146 TGCAAGTATTTGTTTTTGAGGGC 58.624 39.130 0.00 0.00 36.65 5.19
669 670 6.458210 AGATGCAAGTATTTGTTTTTGAGGG 58.542 36.000 0.00 0.00 36.65 4.30
670 671 7.116805 GGAAGATGCAAGTATTTGTTTTTGAGG 59.883 37.037 0.00 0.00 36.65 3.86
671 672 7.652909 TGGAAGATGCAAGTATTTGTTTTTGAG 59.347 33.333 0.00 0.00 36.65 3.02
672 673 7.495901 TGGAAGATGCAAGTATTTGTTTTTGA 58.504 30.769 0.00 0.00 36.65 2.69
673 674 7.712264 TGGAAGATGCAAGTATTTGTTTTTG 57.288 32.000 0.00 0.00 36.65 2.44
674 675 8.907222 AATGGAAGATGCAAGTATTTGTTTTT 57.093 26.923 0.00 0.00 36.65 1.94
675 676 7.603784 GGAATGGAAGATGCAAGTATTTGTTTT 59.396 33.333 0.00 0.00 36.65 2.43
676 677 7.099120 GGAATGGAAGATGCAAGTATTTGTTT 58.901 34.615 0.00 0.00 36.65 2.83
677 678 6.211184 TGGAATGGAAGATGCAAGTATTTGTT 59.789 34.615 0.00 0.00 36.65 2.83
678 679 5.716228 TGGAATGGAAGATGCAAGTATTTGT 59.284 36.000 0.00 0.00 36.65 2.83
679 680 6.211587 TGGAATGGAAGATGCAAGTATTTG 57.788 37.500 0.00 0.00 37.36 2.32
680 681 6.608405 TCATGGAATGGAAGATGCAAGTATTT 59.392 34.615 0.00 0.00 46.73 1.40
681 682 6.040166 GTCATGGAATGGAAGATGCAAGTATT 59.960 38.462 0.00 0.00 46.73 1.89
917 918 1.679680 CGTGGTGGTAGTACGATGGAT 59.320 52.381 0.00 0.00 40.01 3.41
918 919 1.097232 CGTGGTGGTAGTACGATGGA 58.903 55.000 0.00 0.00 40.01 3.41
919 920 0.101759 CCGTGGTGGTAGTACGATGG 59.898 60.000 0.00 0.00 40.01 3.51
921 922 1.098050 GTCCGTGGTGGTAGTACGAT 58.902 55.000 0.00 0.00 40.01 3.73
922 923 0.250684 TGTCCGTGGTGGTAGTACGA 60.251 55.000 0.00 0.00 40.01 3.43
923 924 0.597568 TTGTCCGTGGTGGTAGTACG 59.402 55.000 0.00 0.00 39.52 3.67
924 925 1.670967 GCTTGTCCGTGGTGGTAGTAC 60.671 57.143 0.00 0.00 39.52 2.73
925 926 0.604578 GCTTGTCCGTGGTGGTAGTA 59.395 55.000 0.00 0.00 39.52 1.82
978 982 3.768632 CTCGTACCGAGCAGCAAC 58.231 61.111 0.20 0.00 46.75 4.17
1110 1115 0.895530 TCCTGTCGATGACCTTGACC 59.104 55.000 0.00 0.00 37.45 4.02
1176 1181 2.440247 AGCAATAACAGCCGGGCC 60.440 61.111 17.02 0.00 0.00 5.80
1178 1183 0.676466 TCACAGCAATAACAGCCGGG 60.676 55.000 2.18 0.00 0.00 5.73
1180 1185 1.464023 CGTTCACAGCAATAACAGCCG 60.464 52.381 0.00 0.00 0.00 5.52
1191 1196 3.084579 CGGAGCATCGTTCACAGC 58.915 61.111 0.00 0.00 34.37 4.40
1344 1352 2.555757 GCAACCAGATAGATGGAATGGC 59.444 50.000 0.00 0.00 43.57 4.40
1431 1439 1.875813 GTCGCGATCACCTGAGCAG 60.876 63.158 14.06 0.00 0.00 4.24
1435 1443 0.601057 TCTTTGTCGCGATCACCTGA 59.399 50.000 14.06 3.68 0.00 3.86
1450 1458 5.411781 GTCACCAGACATATCTTCGTCTTT 58.588 41.667 0.00 0.00 44.34 2.52
1534 1542 7.284074 TCCTGAACAATAACCAAGAACTGTTA 58.716 34.615 0.00 0.00 0.00 2.41
1669 1680 1.874345 GAAAGACGCCTCTCCGGTGA 61.874 60.000 6.00 6.00 46.58 4.02
1709 1720 6.625267 ACTAGCTAGGGGAGAATGAGAATAA 58.375 40.000 24.35 0.00 0.00 1.40
1732 1743 4.969816 AGAGTTATACGCAAACATGCAAC 58.030 39.130 0.00 0.00 34.41 4.17
1934 1946 3.181502 GCTCATAGCCTTTGCAAGTTCTC 60.182 47.826 0.00 0.00 41.13 2.87
1976 1988 7.563888 TTGGAGTTGATCAATCTGAATCATC 57.436 36.000 12.12 0.00 0.00 2.92
2015 2027 0.540365 CTGCCCTGGCTGGAAGAAAA 60.540 55.000 12.58 0.00 42.51 2.29
2142 2181 6.232692 AGTTGGCAATGCAAAATACTGAAAT 58.767 32.000 7.79 0.00 0.00 2.17
2331 2370 4.560108 GCAAAAGGCATCATCAGACACTTT 60.560 41.667 0.00 0.00 43.97 2.66
2332 2371 3.057033 GCAAAAGGCATCATCAGACACTT 60.057 43.478 0.00 0.00 43.97 3.16
2501 2542 8.375506 TGTATTGGTCTAATGCTTCTAATAGGG 58.624 37.037 0.00 0.00 33.15 3.53
2560 2601 1.813178 TCTTCGCTCTCTACACCACAG 59.187 52.381 0.00 0.00 0.00 3.66
2591 2632 1.548719 TGGAACCACTCGTCATCGAAT 59.451 47.619 0.00 0.00 45.61 3.34
2651 2701 7.611079 TCAAGATCAACACAATCATCACCATTA 59.389 33.333 0.00 0.00 0.00 1.90
2652 2702 6.434965 TCAAGATCAACACAATCATCACCATT 59.565 34.615 0.00 0.00 0.00 3.16
2653 2703 5.947566 TCAAGATCAACACAATCATCACCAT 59.052 36.000 0.00 0.00 0.00 3.55
2654 2704 5.315348 TCAAGATCAACACAATCATCACCA 58.685 37.500 0.00 0.00 0.00 4.17
2655 2705 5.885230 TCAAGATCAACACAATCATCACC 57.115 39.130 0.00 0.00 0.00 4.02
2656 2706 7.080353 TCATCAAGATCAACACAATCATCAC 57.920 36.000 0.00 0.00 0.00 3.06
2657 2707 6.317893 CCTCATCAAGATCAACACAATCATCA 59.682 38.462 0.00 0.00 0.00 3.07
2658 2708 6.726230 CCTCATCAAGATCAACACAATCATC 58.274 40.000 0.00 0.00 0.00 2.92
2659 2709 5.067413 GCCTCATCAAGATCAACACAATCAT 59.933 40.000 0.00 0.00 0.00 2.45
2772 2822 2.957402 AGGAAATGACTGGTGCAGAA 57.043 45.000 0.00 0.00 35.18 3.02
2937 2987 7.175990 GGAACAAAGTTGACAGGATATGGTTAA 59.824 37.037 0.00 0.00 0.00 2.01
2939 2989 5.476945 GGAACAAAGTTGACAGGATATGGTT 59.523 40.000 0.00 0.00 0.00 3.67
2979 3029 3.019564 AGCTAGACCCATTTGTTGATGC 58.980 45.455 0.00 0.00 0.00 3.91
3011 3061 1.247567 CAAGTCAGCCACCGGAAAAT 58.752 50.000 9.46 0.00 0.00 1.82
3092 3142 5.046014 AGCTGTGATTATCTCCAGTGTTTCT 60.046 40.000 11.80 1.49 0.00 2.52
3103 3153 1.476471 GGGCTGCAGCTGTGATTATCT 60.476 52.381 35.82 0.00 41.70 1.98
3123 3173 1.085091 GCTGACAAGCTCACATCCTG 58.915 55.000 0.00 0.00 46.60 3.86
3124 3174 3.547567 GCTGACAAGCTCACATCCT 57.452 52.632 0.00 0.00 46.60 3.24
3174 3224 7.643569 TGAATTCAAATATTGCCAAGCTCTA 57.356 32.000 5.45 0.00 0.00 2.43
3291 3341 2.920524 AGATCCAGCATGCTTCTTGAG 58.079 47.619 19.98 5.37 31.97 3.02
3352 3402 8.119891 TGGTATTGCTATCTCCAGTGGTATATA 58.880 37.037 9.54 5.06 0.00 0.86
3415 3465 3.114643 TCCAGATCCCACATGTCAGTA 57.885 47.619 0.00 0.00 0.00 2.74
3549 3599 0.460459 TGGACACTTCGACAACGCAA 60.460 50.000 0.00 0.00 39.58 4.85
3555 3605 1.068588 CTGGACTTGGACACTTCGACA 59.931 52.381 0.00 0.00 0.00 4.35
3665 3715 6.128200 TGTTCATCAGTAAACTGTGCATCATC 60.128 38.462 9.81 0.00 44.12 2.92
3734 3789 2.825836 GCCCGGTCAGCAATCTGG 60.826 66.667 0.00 0.00 40.69 3.86
3785 3840 1.143073 GAGTTGGGAGTTGGTTGGTCT 59.857 52.381 0.00 0.00 0.00 3.85
3793 3848 4.757149 CCTTTACTCAAGAGTTGGGAGTTG 59.243 45.833 8.17 0.00 41.74 3.16
3799 3854 8.970859 ATAATCATCCTTTACTCAAGAGTTGG 57.029 34.615 8.17 8.72 42.54 3.77
3806 3861 9.958180 TGACAGAAATAATCATCCTTTACTCAA 57.042 29.630 0.00 0.00 0.00 3.02
3824 3879 4.201950 GCTGTTTTGCTCTCTTGACAGAAA 60.202 41.667 5.57 0.00 37.32 2.52
3889 3952 3.070018 CAATCTTCGAGAACCAACTGCT 58.930 45.455 0.00 0.00 0.00 4.24
3890 3953 2.808543 ACAATCTTCGAGAACCAACTGC 59.191 45.455 0.00 0.00 0.00 4.40
3891 3954 6.537566 CATTACAATCTTCGAGAACCAACTG 58.462 40.000 0.00 0.00 0.00 3.16
3892 3955 5.122396 GCATTACAATCTTCGAGAACCAACT 59.878 40.000 0.00 0.00 0.00 3.16
3894 3957 5.122239 CAGCATTACAATCTTCGAGAACCAA 59.878 40.000 0.00 0.00 0.00 3.67
3898 3961 3.623060 GGCAGCATTACAATCTTCGAGAA 59.377 43.478 0.00 0.00 0.00 2.87
3899 3962 3.198068 GGCAGCATTACAATCTTCGAGA 58.802 45.455 0.00 0.00 0.00 4.04
3900 3963 2.289002 GGGCAGCATTACAATCTTCGAG 59.711 50.000 0.00 0.00 0.00 4.04
3901 3964 2.092968 AGGGCAGCATTACAATCTTCGA 60.093 45.455 0.00 0.00 0.00 3.71
3903 3966 2.360165 CCAGGGCAGCATTACAATCTTC 59.640 50.000 0.00 0.00 0.00 2.87
3904 3967 2.291800 ACCAGGGCAGCATTACAATCTT 60.292 45.455 0.00 0.00 0.00 2.40
3905 3968 1.285962 ACCAGGGCAGCATTACAATCT 59.714 47.619 0.00 0.00 0.00 2.40
3906 3969 1.767759 ACCAGGGCAGCATTACAATC 58.232 50.000 0.00 0.00 0.00 2.67
3907 3970 2.236489 AACCAGGGCAGCATTACAAT 57.764 45.000 0.00 0.00 0.00 2.71
3908 3971 2.889170 TAACCAGGGCAGCATTACAA 57.111 45.000 0.00 0.00 0.00 2.41
3909 3972 2.889170 TTAACCAGGGCAGCATTACA 57.111 45.000 0.00 0.00 0.00 2.41
3910 3973 3.287222 TGATTAACCAGGGCAGCATTAC 58.713 45.455 0.00 0.00 0.00 1.89
3911 3974 3.660970 TGATTAACCAGGGCAGCATTA 57.339 42.857 0.00 0.00 0.00 1.90
3912 3975 2.530460 TGATTAACCAGGGCAGCATT 57.470 45.000 0.00 0.00 0.00 3.56
3913 3976 2.530460 TTGATTAACCAGGGCAGCAT 57.470 45.000 0.00 0.00 0.00 3.79
3914 3977 2.530460 ATTGATTAACCAGGGCAGCA 57.470 45.000 0.00 0.00 0.00 4.41
3915 3978 3.820557 TCTATTGATTAACCAGGGCAGC 58.179 45.455 0.00 0.00 0.00 5.25
3916 3979 6.302269 AGATTCTATTGATTAACCAGGGCAG 58.698 40.000 0.00 0.00 0.00 4.85
3917 3980 6.266131 AGATTCTATTGATTAACCAGGGCA 57.734 37.500 0.00 0.00 0.00 5.36
3918 3981 5.707764 GGAGATTCTATTGATTAACCAGGGC 59.292 44.000 0.00 0.00 0.00 5.19
3919 3982 6.044871 AGGGAGATTCTATTGATTAACCAGGG 59.955 42.308 0.00 0.00 0.00 4.45
3920 3983 7.084268 AGGGAGATTCTATTGATTAACCAGG 57.916 40.000 0.00 0.00 0.00 4.45
3921 3984 8.986929 AAAGGGAGATTCTATTGATTAACCAG 57.013 34.615 0.00 0.00 0.00 4.00
3922 3985 9.408648 GAAAAGGGAGATTCTATTGATTAACCA 57.591 33.333 0.00 0.00 0.00 3.67
3923 3986 9.634021 AGAAAAGGGAGATTCTATTGATTAACC 57.366 33.333 0.00 0.00 34.24 2.85
3926 3989 9.838339 GACAGAAAAGGGAGATTCTATTGATTA 57.162 33.333 0.00 0.00 34.24 1.75
3927 3990 7.497249 CGACAGAAAAGGGAGATTCTATTGATT 59.503 37.037 0.00 0.00 34.24 2.57
3928 3991 6.989169 CGACAGAAAAGGGAGATTCTATTGAT 59.011 38.462 0.00 0.00 34.24 2.57
3929 3992 6.341316 CGACAGAAAAGGGAGATTCTATTGA 58.659 40.000 0.00 0.00 34.24 2.57
3930 3993 5.007136 GCGACAGAAAAGGGAGATTCTATTG 59.993 44.000 0.00 0.00 34.24 1.90
3931 3994 5.119694 GCGACAGAAAAGGGAGATTCTATT 58.880 41.667 0.00 0.00 34.24 1.73
3932 3995 4.162320 TGCGACAGAAAAGGGAGATTCTAT 59.838 41.667 0.00 0.00 34.24 1.98
3933 3996 3.513912 TGCGACAGAAAAGGGAGATTCTA 59.486 43.478 0.00 0.00 34.24 2.10
3934 3997 2.303022 TGCGACAGAAAAGGGAGATTCT 59.697 45.455 0.00 0.00 36.35 2.40
3935 3998 2.699954 TGCGACAGAAAAGGGAGATTC 58.300 47.619 0.00 0.00 0.00 2.52
3936 3999 2.859165 TGCGACAGAAAAGGGAGATT 57.141 45.000 0.00 0.00 0.00 2.40
3937 4000 2.303022 TCTTGCGACAGAAAAGGGAGAT 59.697 45.455 0.00 0.00 0.00 2.75
3938 4001 1.691976 TCTTGCGACAGAAAAGGGAGA 59.308 47.619 0.00 0.00 0.00 3.71
3939 4002 2.072298 CTCTTGCGACAGAAAAGGGAG 58.928 52.381 0.00 0.00 0.00 4.30
3940 4003 1.691976 TCTCTTGCGACAGAAAAGGGA 59.308 47.619 0.00 0.00 0.00 4.20
3941 4004 2.169832 TCTCTTGCGACAGAAAAGGG 57.830 50.000 0.00 0.00 0.00 3.95
3942 4005 4.756084 ATTTCTCTTGCGACAGAAAAGG 57.244 40.909 8.29 0.00 40.99 3.11
3943 4006 7.063898 TCTCATATTTCTCTTGCGACAGAAAAG 59.936 37.037 8.29 2.58 40.99 2.27
3944 4007 6.873605 TCTCATATTTCTCTTGCGACAGAAAA 59.126 34.615 8.29 0.40 40.99 2.29
3945 4008 6.398095 TCTCATATTTCTCTTGCGACAGAAA 58.602 36.000 6.83 6.83 41.67 2.52
3946 4009 5.965922 TCTCATATTTCTCTTGCGACAGAA 58.034 37.500 0.00 0.00 0.00 3.02
3947 4010 5.582689 TCTCATATTTCTCTTGCGACAGA 57.417 39.130 0.00 0.00 0.00 3.41
3948 4011 5.752472 ACATCTCATATTTCTCTTGCGACAG 59.248 40.000 0.00 0.00 0.00 3.51
3949 4012 5.664457 ACATCTCATATTTCTCTTGCGACA 58.336 37.500 0.00 0.00 0.00 4.35
3950 4013 7.700322 TTACATCTCATATTTCTCTTGCGAC 57.300 36.000 0.00 0.00 0.00 5.19
3951 4014 8.893219 AATTACATCTCATATTTCTCTTGCGA 57.107 30.769 0.00 0.00 0.00 5.10
3952 4015 9.591404 GAAATTACATCTCATATTTCTCTTGCG 57.409 33.333 0.00 0.00 35.28 4.85
3982 4376 1.804748 GCTCCGGTTCGAATTTCAGTT 59.195 47.619 0.00 0.00 0.00 3.16
3985 4379 2.006888 GATGCTCCGGTTCGAATTTCA 58.993 47.619 0.00 0.00 0.00 2.69
3999 4393 9.034544 ACAAAGTTTTTGTGAAATTAGATGCTC 57.965 29.630 6.40 0.00 0.00 4.26
4043 4437 9.838339 AGTATAGAAAATGATCCTTTGTAGTGG 57.162 33.333 0.00 0.00 0.00 4.00
4080 4474 8.715998 GGAAGCAGTGATACAATAATGTCTATG 58.284 37.037 0.00 0.00 41.05 2.23
4141 4535 2.942804 TCTGTTGCCATGTTTCCTTGA 58.057 42.857 0.00 0.00 0.00 3.02
4192 4586 1.694844 TACGTGACCACTGAACTGGA 58.305 50.000 0.00 0.00 35.04 3.86
4197 4591 1.416243 AGGGTTACGTGACCACTGAA 58.584 50.000 28.40 0.00 41.65 3.02
4236 4633 1.134753 CAGCTCTCTCATCGCTCAACT 59.865 52.381 0.00 0.00 0.00 3.16
4283 4680 7.717436 TGAAGAAATACCACGATGCCAAATATA 59.283 33.333 0.00 0.00 0.00 0.86
4395 4793 9.585099 GTCCATTTTGATTTGCATACATTCTTA 57.415 29.630 0.00 0.00 0.00 2.10
4425 4823 8.628630 TTGTTATTCATCAAATATGCCCGATA 57.371 30.769 0.00 0.00 29.96 2.92
4439 4837 9.308318 GAGAACCTAGAGAACTTGTTATTCATC 57.692 37.037 0.00 0.00 0.00 2.92
4450 4848 5.326069 TGCTGTTAGAGAACCTAGAGAACT 58.674 41.667 0.00 0.00 34.38 3.01
4506 5442 2.929301 TGTCCCAGTCCCTCCTATTTT 58.071 47.619 0.00 0.00 0.00 1.82
4519 5455 1.561542 AGCTGGAAAGGTATGTCCCAG 59.438 52.381 0.00 0.00 45.31 4.45
4656 5993 3.726291 TTTACTTGGTTCTTTGCAGGC 57.274 42.857 0.00 0.00 0.00 4.85
4668 6005 2.423538 CCCCGCTCTGAAATTTACTTGG 59.576 50.000 0.00 0.00 0.00 3.61
4686 6026 1.135960 CTCCATCTCCTTTCCTCCCC 58.864 60.000 0.00 0.00 0.00 4.81
4744 6084 4.981812 TCCAAGAGCATGCAGATATCATT 58.018 39.130 21.98 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.