Multiple sequence alignment - TraesCS6D01G140100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G140100 chr6D 100.000 2552 0 0 1 2552 109274715 109277266 0.000000e+00 4713.0
1 TraesCS6D01G140100 chr6D 94.265 279 16 0 257 535 128953423 128953701 6.520000e-116 427.0
2 TraesCS6D01G140100 chr6D 93.127 291 18 2 248 536 28899738 28900028 2.350000e-115 425.0
3 TraesCS6D01G140100 chr6B 93.064 2004 79 20 580 2533 198447935 198449928 0.000000e+00 2876.0
4 TraesCS6D01G140100 chr6B 86.328 256 34 1 3 258 198447234 198447488 6.950000e-71 278.0
5 TraesCS6D01G140100 chr6B 100.000 44 0 0 2509 2552 198449930 198449973 5.850000e-12 82.4
6 TraesCS6D01G140100 chr6A 92.518 1390 49 18 656 2011 134224945 134226313 0.000000e+00 1940.0
7 TraesCS6D01G140100 chr6A 85.741 526 28 18 2004 2510 134227698 134228195 1.750000e-141 512.0
8 TraesCS6D01G140100 chr6A 83.099 71 12 0 1458 1528 485752728 485752798 5.890000e-07 65.8
9 TraesCS6D01G140100 chr3D 94.138 290 15 2 248 535 169336778 169336489 8.380000e-120 440.0
10 TraesCS6D01G140100 chr4D 94.326 282 16 0 257 538 102140653 102140372 1.400000e-117 433.0
11 TraesCS6D01G140100 chr2D 94.624 279 15 0 258 536 212925849 212926127 1.400000e-117 433.0
12 TraesCS6D01G140100 chr2D 93.471 291 17 2 248 536 274348873 274349163 5.040000e-117 431.0
13 TraesCS6D01G140100 chr2D 93.993 283 17 0 256 538 508773753 508773471 1.810000e-116 429.0
14 TraesCS6D01G140100 chr2D 93.151 292 16 4 248 536 198279175 198279465 2.350000e-115 425.0
15 TraesCS6D01G140100 chr7D 92.784 291 19 2 248 536 481542349 481542639 1.090000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G140100 chr6D 109274715 109277266 2551 False 4713.0 4713 100.000000 1 2552 1 chr6D.!!$F2 2551
1 TraesCS6D01G140100 chr6B 198447234 198449973 2739 False 1078.8 2876 93.130667 3 2552 3 chr6B.!!$F1 2549
2 TraesCS6D01G140100 chr6A 134224945 134228195 3250 False 1226.0 1940 89.129500 656 2510 2 chr6A.!!$F2 1854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 3928 0.323451 CCTAGGTTTGGAGTTGGGCC 60.323 60.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.344865 ACCCCATCCGTGTGCACC 62.345 66.667 15.69 4.74 0.00 5.01
67 68 3.551846 AGACCATGTCTTTGAAACCGTT 58.448 40.909 0.00 0.00 40.28 4.44
99 100 1.028330 CCTGCATTGTGTGAGGCGAT 61.028 55.000 0.00 0.00 0.00 4.58
108 109 6.550843 CATTGTGTGAGGCGATAATGTTTTA 58.449 36.000 0.00 0.00 0.00 1.52
112 113 4.638421 TGTGAGGCGATAATGTTTTAAGGG 59.362 41.667 0.00 0.00 0.00 3.95
117 118 3.848554 GCGATAATGTTTTAAGGGAGCGC 60.849 47.826 0.00 0.00 0.00 5.92
118 119 3.603857 CGATAATGTTTTAAGGGAGCGCG 60.604 47.826 0.00 0.00 0.00 6.86
143 144 2.435741 CGACTGTTCGCTCAAGGTC 58.564 57.895 0.00 0.00 38.71 3.85
154 155 2.093973 CGCTCAAGGTCAACTACATCCT 60.094 50.000 0.00 0.00 0.00 3.24
162 163 3.930848 GGTCAACTACATCCTTAACCACG 59.069 47.826 0.00 0.00 0.00 4.94
167 168 0.108329 ACATCCTTAACCACGCCTCG 60.108 55.000 0.00 0.00 0.00 4.63
182 183 1.464734 CCTCGTCTGCTTCCTCTACA 58.535 55.000 0.00 0.00 0.00 2.74
183 184 1.403679 CCTCGTCTGCTTCCTCTACAG 59.596 57.143 0.00 0.00 0.00 2.74
184 185 2.088423 CTCGTCTGCTTCCTCTACAGT 58.912 52.381 0.00 0.00 33.12 3.55
192 193 1.205893 CTTCCTCTACAGTGGAGCACC 59.794 57.143 8.44 0.00 38.72 5.01
215 216 4.396166 CACCTCATCTTCACCACCATAAAC 59.604 45.833 0.00 0.00 0.00 2.01
225 226 1.724623 CCACCATAAACGACGACACTG 59.275 52.381 0.00 0.00 0.00 3.66
227 228 0.719465 CCATAAACGACGACACTGCC 59.281 55.000 0.00 0.00 0.00 4.85
229 230 0.038892 ATAAACGACGACACTGCCGT 60.039 50.000 0.00 0.00 43.56 5.68
233 234 4.961511 GACGACACTGCCGTGCCA 62.962 66.667 8.32 0.00 45.10 4.92
236 237 2.829206 CGACACTGCCGTGCCAAAA 61.829 57.895 8.32 0.00 45.10 2.44
237 238 1.659794 GACACTGCCGTGCCAAAAT 59.340 52.632 8.32 0.00 45.10 1.82
258 259 5.622770 ATTTTCGGCAAACTGGTACTTAG 57.377 39.130 0.00 0.00 0.00 2.18
259 260 2.754946 TCGGCAAACTGGTACTTAGG 57.245 50.000 0.00 0.00 0.00 2.69
260 261 1.276989 TCGGCAAACTGGTACTTAGGG 59.723 52.381 0.00 0.00 0.00 3.53
261 262 1.677820 CGGCAAACTGGTACTTAGGGG 60.678 57.143 0.00 0.00 0.00 4.79
262 263 1.460504 GCAAACTGGTACTTAGGGGC 58.539 55.000 0.00 0.00 0.00 5.80
263 264 1.004394 GCAAACTGGTACTTAGGGGCT 59.996 52.381 0.00 0.00 0.00 5.19
264 265 2.711542 CAAACTGGTACTTAGGGGCTG 58.288 52.381 0.00 0.00 0.00 4.85
265 266 2.039879 CAAACTGGTACTTAGGGGCTGT 59.960 50.000 0.00 0.00 0.00 4.40
266 267 2.040342 ACTGGTACTTAGGGGCTGTT 57.960 50.000 0.00 0.00 0.00 3.16
267 268 2.345560 ACTGGTACTTAGGGGCTGTTT 58.654 47.619 0.00 0.00 0.00 2.83
268 269 2.039879 ACTGGTACTTAGGGGCTGTTTG 59.960 50.000 0.00 0.00 0.00 2.93
269 270 1.353022 TGGTACTTAGGGGCTGTTTGG 59.647 52.381 0.00 0.00 0.00 3.28
270 271 1.353358 GGTACTTAGGGGCTGTTTGGT 59.647 52.381 0.00 0.00 0.00 3.67
271 272 2.224942 GGTACTTAGGGGCTGTTTGGTT 60.225 50.000 0.00 0.00 0.00 3.67
272 273 2.767644 ACTTAGGGGCTGTTTGGTTT 57.232 45.000 0.00 0.00 0.00 3.27
273 274 2.316108 ACTTAGGGGCTGTTTGGTTTG 58.684 47.619 0.00 0.00 0.00 2.93
274 275 2.316108 CTTAGGGGCTGTTTGGTTTGT 58.684 47.619 0.00 0.00 0.00 2.83
275 276 1.698506 TAGGGGCTGTTTGGTTTGTG 58.301 50.000 0.00 0.00 0.00 3.33
276 277 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.000 0.00 0.00 0.00 3.58
277 278 0.104120 GGGGCTGTTTGGTTTGTGAC 59.896 55.000 0.00 0.00 0.00 3.67
278 279 1.111277 GGGCTGTTTGGTTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
279 280 2.303175 GGGCTGTTTGGTTTGTGACTA 58.697 47.619 0.00 0.00 0.00 2.59
280 281 2.890945 GGGCTGTTTGGTTTGTGACTAT 59.109 45.455 0.00 0.00 0.00 2.12
281 282 3.305335 GGGCTGTTTGGTTTGTGACTATG 60.305 47.826 0.00 0.00 0.00 2.23
282 283 3.305335 GGCTGTTTGGTTTGTGACTATGG 60.305 47.826 0.00 0.00 0.00 2.74
283 284 3.317993 GCTGTTTGGTTTGTGACTATGGT 59.682 43.478 0.00 0.00 0.00 3.55
284 285 4.202111 GCTGTTTGGTTTGTGACTATGGTT 60.202 41.667 0.00 0.00 0.00 3.67
285 286 5.255710 TGTTTGGTTTGTGACTATGGTTG 57.744 39.130 0.00 0.00 0.00 3.77
286 287 4.048504 GTTTGGTTTGTGACTATGGTTGC 58.951 43.478 0.00 0.00 0.00 4.17
287 288 2.235016 TGGTTTGTGACTATGGTTGCC 58.765 47.619 0.00 0.00 0.00 4.52
288 289 2.235016 GGTTTGTGACTATGGTTGCCA 58.765 47.619 0.00 0.00 38.19 4.92
289 290 2.030274 GGTTTGTGACTATGGTTGCCAC 60.030 50.000 0.00 0.00 35.80 5.01
290 291 2.621055 GTTTGTGACTATGGTTGCCACA 59.379 45.455 0.00 0.00 35.80 4.17
291 292 2.877097 TGTGACTATGGTTGCCACAT 57.123 45.000 0.00 0.00 35.80 3.21
292 293 2.435422 TGTGACTATGGTTGCCACATG 58.565 47.619 0.00 0.00 35.80 3.21
293 294 2.224744 TGTGACTATGGTTGCCACATGT 60.225 45.455 0.00 0.00 35.80 3.21
294 295 2.819608 GTGACTATGGTTGCCACATGTT 59.180 45.455 0.00 0.00 35.80 2.71
295 296 2.819019 TGACTATGGTTGCCACATGTTG 59.181 45.455 0.00 0.00 35.80 3.33
296 297 1.545582 ACTATGGTTGCCACATGTTGC 59.454 47.619 14.74 14.74 35.80 4.17
297 298 0.894141 TATGGTTGCCACATGTTGCC 59.106 50.000 18.39 4.70 35.80 4.52
298 299 1.120184 ATGGTTGCCACATGTTGCCA 61.120 50.000 18.39 10.11 35.80 4.92
299 300 1.300853 GGTTGCCACATGTTGCCAC 60.301 57.895 18.39 16.85 0.00 5.01
300 301 1.440893 GTTGCCACATGTTGCCACA 59.559 52.632 18.39 0.00 37.31 4.17
301 302 0.033781 GTTGCCACATGTTGCCACAT 59.966 50.000 18.39 0.00 45.18 3.21
302 303 0.317799 TTGCCACATGTTGCCACATC 59.682 50.000 18.39 0.00 42.14 3.06
303 304 0.540133 TGCCACATGTTGCCACATCT 60.540 50.000 18.39 0.00 42.14 2.90
304 305 1.271817 TGCCACATGTTGCCACATCTA 60.272 47.619 18.39 0.00 42.14 1.98
305 306 1.818060 GCCACATGTTGCCACATCTAA 59.182 47.619 10.76 0.00 42.14 2.10
306 307 2.159338 GCCACATGTTGCCACATCTAAG 60.159 50.000 10.76 0.00 42.14 2.18
307 308 2.424601 CCACATGTTGCCACATCTAAGG 59.575 50.000 0.00 0.00 42.14 2.69
308 309 3.084039 CACATGTTGCCACATCTAAGGT 58.916 45.455 0.00 0.00 42.14 3.50
309 310 3.507233 CACATGTTGCCACATCTAAGGTT 59.493 43.478 0.00 0.00 42.14 3.50
310 311 4.699735 CACATGTTGCCACATCTAAGGTTA 59.300 41.667 0.00 0.00 42.14 2.85
311 312 4.943705 ACATGTTGCCACATCTAAGGTTAG 59.056 41.667 0.00 0.00 42.14 2.34
312 313 4.634012 TGTTGCCACATCTAAGGTTAGT 57.366 40.909 0.00 0.00 32.61 2.24
313 314 4.575885 TGTTGCCACATCTAAGGTTAGTC 58.424 43.478 0.00 0.00 32.61 2.59
314 315 4.041075 TGTTGCCACATCTAAGGTTAGTCA 59.959 41.667 0.00 0.00 32.61 3.41
315 316 4.901197 TGCCACATCTAAGGTTAGTCAA 57.099 40.909 0.00 0.00 32.61 3.18
316 317 4.575885 TGCCACATCTAAGGTTAGTCAAC 58.424 43.478 0.00 0.00 32.61 3.18
317 318 4.286032 TGCCACATCTAAGGTTAGTCAACT 59.714 41.667 0.00 0.00 34.88 3.16
318 319 5.221843 TGCCACATCTAAGGTTAGTCAACTT 60.222 40.000 0.00 0.00 34.88 2.66
319 320 5.705905 GCCACATCTAAGGTTAGTCAACTTT 59.294 40.000 0.00 0.00 37.65 2.66
320 321 6.348540 GCCACATCTAAGGTTAGTCAACTTTG 60.349 42.308 0.00 0.00 35.04 2.77
321 322 6.934645 CCACATCTAAGGTTAGTCAACTTTGA 59.065 38.462 0.00 0.00 35.04 2.69
334 335 4.714632 TCAACTTTGACCAACTTAGGAGG 58.285 43.478 0.00 0.00 31.01 4.30
335 336 3.790089 ACTTTGACCAACTTAGGAGGG 57.210 47.619 0.00 0.00 0.00 4.30
336 337 3.053826 ACTTTGACCAACTTAGGAGGGT 58.946 45.455 0.00 0.00 36.05 4.34
337 338 3.181443 ACTTTGACCAACTTAGGAGGGTG 60.181 47.826 0.00 0.00 32.77 4.61
338 339 2.112279 TGACCAACTTAGGAGGGTGT 57.888 50.000 0.00 0.00 32.77 4.16
339 340 2.414612 TGACCAACTTAGGAGGGTGTT 58.585 47.619 0.00 0.00 32.77 3.32
340 341 2.781174 TGACCAACTTAGGAGGGTGTTT 59.219 45.455 0.00 0.00 32.77 2.83
341 342 3.146847 GACCAACTTAGGAGGGTGTTTG 58.853 50.000 0.00 0.00 32.77 2.93
342 343 2.158519 ACCAACTTAGGAGGGTGTTTGG 60.159 50.000 0.00 0.00 31.04 3.28
343 344 2.158519 CCAACTTAGGAGGGTGTTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
344 345 3.562182 CAACTTAGGAGGGTGTTTGGTT 58.438 45.455 0.00 0.00 0.00 3.67
345 346 3.503800 ACTTAGGAGGGTGTTTGGTTC 57.496 47.619 0.00 0.00 0.00 3.62
346 347 2.781174 ACTTAGGAGGGTGTTTGGTTCA 59.219 45.455 0.00 0.00 0.00 3.18
347 348 3.203487 ACTTAGGAGGGTGTTTGGTTCAA 59.797 43.478 0.00 0.00 0.00 2.69
348 349 2.364972 AGGAGGGTGTTTGGTTCAAG 57.635 50.000 0.00 0.00 0.00 3.02
349 350 0.673985 GGAGGGTGTTTGGTTCAAGC 59.326 55.000 0.00 0.00 0.00 4.01
350 351 0.673985 GAGGGTGTTTGGTTCAAGCC 59.326 55.000 0.00 0.00 0.00 4.35
351 352 0.261696 AGGGTGTTTGGTTCAAGCCT 59.738 50.000 0.00 0.00 35.73 4.58
352 353 1.119684 GGGTGTTTGGTTCAAGCCTT 58.880 50.000 0.00 0.00 0.00 4.35
353 354 2.091555 AGGGTGTTTGGTTCAAGCCTTA 60.092 45.455 0.00 0.00 37.22 2.69
354 355 2.035449 GGGTGTTTGGTTCAAGCCTTAC 59.965 50.000 0.00 0.00 0.00 2.34
355 356 2.035449 GGTGTTTGGTTCAAGCCTTACC 59.965 50.000 0.00 0.00 0.00 2.85
356 357 2.956333 GTGTTTGGTTCAAGCCTTACCT 59.044 45.455 0.00 0.00 33.05 3.08
357 358 3.383505 GTGTTTGGTTCAAGCCTTACCTT 59.616 43.478 0.00 0.00 33.05 3.50
358 359 4.581409 GTGTTTGGTTCAAGCCTTACCTTA 59.419 41.667 0.00 0.00 33.05 2.69
359 360 4.825085 TGTTTGGTTCAAGCCTTACCTTAG 59.175 41.667 0.00 0.00 33.05 2.18
360 361 3.713826 TGGTTCAAGCCTTACCTTAGG 57.286 47.619 0.00 0.00 38.40 2.69
375 376 8.135529 CCTTACCTTAGGCAATATACTTTTTGC 58.864 37.037 0.00 0.94 45.82 3.68
384 385 6.265577 GCAATATACTTTTTGCCACACTAGG 58.734 40.000 0.00 0.00 41.82 3.02
385 386 6.680378 GCAATATACTTTTTGCCACACTAGGG 60.680 42.308 0.00 0.00 41.82 3.53
391 392 3.324713 GCCACACTAGGGCCTCAT 58.675 61.111 10.74 0.00 45.87 2.90
392 393 2.528134 GCCACACTAGGGCCTCATA 58.472 57.895 10.74 0.00 45.87 2.15
393 394 1.059913 GCCACACTAGGGCCTCATAT 58.940 55.000 10.74 0.00 45.87 1.78
394 395 1.271054 GCCACACTAGGGCCTCATATG 60.271 57.143 10.74 7.04 45.87 1.78
395 396 2.329267 CCACACTAGGGCCTCATATGA 58.671 52.381 10.74 5.07 0.00 2.15
396 397 2.037772 CCACACTAGGGCCTCATATGAC 59.962 54.545 10.74 0.00 0.00 3.06
397 398 2.700371 CACACTAGGGCCTCATATGACA 59.300 50.000 10.74 0.00 0.00 3.58
398 399 3.326006 CACACTAGGGCCTCATATGACAT 59.674 47.826 10.74 0.00 0.00 3.06
399 400 4.528206 CACACTAGGGCCTCATATGACATA 59.472 45.833 10.74 0.00 0.00 2.29
400 401 4.528596 ACACTAGGGCCTCATATGACATAC 59.471 45.833 10.74 0.00 0.00 2.39
401 402 4.528206 CACTAGGGCCTCATATGACATACA 59.472 45.833 10.74 0.00 0.00 2.29
402 403 4.528596 ACTAGGGCCTCATATGACATACAC 59.471 45.833 10.74 0.00 0.00 2.90
403 404 3.591789 AGGGCCTCATATGACATACACT 58.408 45.455 0.00 0.00 0.00 3.55
404 405 3.580458 AGGGCCTCATATGACATACACTC 59.420 47.826 0.00 0.00 0.00 3.51
405 406 3.324846 GGGCCTCATATGACATACACTCA 59.675 47.826 0.84 0.00 0.00 3.41
406 407 4.202357 GGGCCTCATATGACATACACTCAA 60.202 45.833 0.84 0.00 0.00 3.02
407 408 5.368145 GGCCTCATATGACATACACTCAAA 58.632 41.667 0.00 0.00 0.00 2.69
408 409 5.822519 GGCCTCATATGACATACACTCAAAA 59.177 40.000 0.00 0.00 0.00 2.44
409 410 6.318648 GGCCTCATATGACATACACTCAAAAA 59.681 38.462 0.00 0.00 0.00 1.94
410 411 7.412853 GCCTCATATGACATACACTCAAAAAG 58.587 38.462 0.00 0.00 0.00 2.27
411 412 7.066284 GCCTCATATGACATACACTCAAAAAGT 59.934 37.037 0.00 0.00 39.44 2.66
412 413 9.599866 CCTCATATGACATACACTCAAAAAGTA 57.400 33.333 0.00 0.00 36.07 2.24
418 419 6.892658 ACATACACTCAAAAAGTATGGCAA 57.107 33.333 14.13 0.00 45.74 4.52
419 420 6.913170 ACATACACTCAAAAAGTATGGCAAG 58.087 36.000 14.13 0.00 45.74 4.01
420 421 6.714810 ACATACACTCAAAAAGTATGGCAAGA 59.285 34.615 14.13 0.00 45.74 3.02
421 422 7.394359 ACATACACTCAAAAAGTATGGCAAGAT 59.606 33.333 14.13 0.00 45.74 2.40
422 423 6.655078 ACACTCAAAAAGTATGGCAAGATT 57.345 33.333 0.00 0.00 36.07 2.40
423 424 6.681777 ACACTCAAAAAGTATGGCAAGATTC 58.318 36.000 0.00 0.00 36.07 2.52
424 425 6.095377 CACTCAAAAAGTATGGCAAGATTCC 58.905 40.000 0.00 0.00 36.07 3.01
425 426 5.185828 ACTCAAAAAGTATGGCAAGATTCCC 59.814 40.000 0.00 0.00 36.07 3.97
426 427 5.332743 TCAAAAAGTATGGCAAGATTCCCT 58.667 37.500 0.00 0.00 0.00 4.20
427 428 5.779771 TCAAAAAGTATGGCAAGATTCCCTT 59.220 36.000 0.00 0.00 34.91 3.95
428 429 6.951198 TCAAAAAGTATGGCAAGATTCCCTTA 59.049 34.615 0.00 0.00 32.86 2.69
429 430 7.122650 TCAAAAAGTATGGCAAGATTCCCTTAG 59.877 37.037 0.00 0.00 32.86 2.18
430 431 4.713792 AGTATGGCAAGATTCCCTTAGG 57.286 45.455 0.00 0.00 32.86 2.69
431 432 2.371658 ATGGCAAGATTCCCTTAGGC 57.628 50.000 0.00 0.00 32.86 3.93
432 433 1.298953 TGGCAAGATTCCCTTAGGCT 58.701 50.000 0.00 0.00 32.86 4.58
433 434 1.640670 TGGCAAGATTCCCTTAGGCTT 59.359 47.619 0.00 0.00 32.86 4.35
434 435 2.027385 GGCAAGATTCCCTTAGGCTTG 58.973 52.381 10.63 10.63 39.06 4.01
436 437 3.010200 CAAGATTCCCTTAGGCTTGCT 57.990 47.619 0.00 0.00 32.86 3.91
437 438 4.156455 CAAGATTCCCTTAGGCTTGCTA 57.844 45.455 0.00 0.00 32.86 3.49
438 439 4.526970 CAAGATTCCCTTAGGCTTGCTAA 58.473 43.478 0.00 0.00 32.86 3.09
439 440 4.157849 AGATTCCCTTAGGCTTGCTAAC 57.842 45.455 0.00 0.00 0.00 2.34
440 441 3.783082 AGATTCCCTTAGGCTTGCTAACT 59.217 43.478 0.00 0.00 0.00 2.24
441 442 4.228438 AGATTCCCTTAGGCTTGCTAACTT 59.772 41.667 0.00 0.00 0.00 2.66
442 443 3.350219 TCCCTTAGGCTTGCTAACTTG 57.650 47.619 0.00 0.00 0.00 3.16
443 444 2.642807 TCCCTTAGGCTTGCTAACTTGT 59.357 45.455 0.00 0.00 0.00 3.16
444 445 2.749621 CCCTTAGGCTTGCTAACTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
445 446 2.749621 CCTTAGGCTTGCTAACTTGTGG 59.250 50.000 0.00 0.00 0.00 4.17
446 447 1.821216 TAGGCTTGCTAACTTGTGGC 58.179 50.000 0.00 0.00 0.00 5.01
447 448 0.111253 AGGCTTGCTAACTTGTGGCT 59.889 50.000 0.00 0.00 34.10 4.75
448 449 0.523519 GGCTTGCTAACTTGTGGCTC 59.476 55.000 0.00 0.00 34.10 4.70
449 450 1.528129 GCTTGCTAACTTGTGGCTCT 58.472 50.000 0.00 0.00 34.10 4.09
450 451 1.466558 GCTTGCTAACTTGTGGCTCTC 59.533 52.381 0.00 0.00 34.10 3.20
451 452 2.771089 CTTGCTAACTTGTGGCTCTCA 58.229 47.619 0.00 0.00 34.10 3.27
452 453 3.341823 CTTGCTAACTTGTGGCTCTCAT 58.658 45.455 0.00 0.00 34.10 2.90
453 454 3.423539 TGCTAACTTGTGGCTCTCATT 57.576 42.857 0.00 0.00 34.10 2.57
454 455 3.754965 TGCTAACTTGTGGCTCTCATTT 58.245 40.909 0.00 0.00 34.10 2.32
455 456 4.144297 TGCTAACTTGTGGCTCTCATTTT 58.856 39.130 0.00 0.00 34.10 1.82
456 457 4.022935 TGCTAACTTGTGGCTCTCATTTTG 60.023 41.667 0.00 0.00 34.10 2.44
457 458 4.216257 GCTAACTTGTGGCTCTCATTTTGA 59.784 41.667 0.00 0.00 0.00 2.69
458 459 5.278463 GCTAACTTGTGGCTCTCATTTTGAA 60.278 40.000 0.00 0.00 0.00 2.69
459 460 4.843220 ACTTGTGGCTCTCATTTTGAAG 57.157 40.909 0.00 0.00 0.00 3.02
460 461 4.464008 ACTTGTGGCTCTCATTTTGAAGA 58.536 39.130 0.00 0.00 0.00 2.87
461 462 4.889409 ACTTGTGGCTCTCATTTTGAAGAA 59.111 37.500 0.00 0.00 0.00 2.52
462 463 4.836125 TGTGGCTCTCATTTTGAAGAAC 57.164 40.909 0.00 0.00 0.00 3.01
463 464 4.464008 TGTGGCTCTCATTTTGAAGAACT 58.536 39.130 0.00 0.00 0.00 3.01
464 465 5.620206 TGTGGCTCTCATTTTGAAGAACTA 58.380 37.500 0.00 0.00 0.00 2.24
465 466 6.061441 TGTGGCTCTCATTTTGAAGAACTAA 58.939 36.000 0.00 0.00 0.00 2.24
466 467 6.017109 TGTGGCTCTCATTTTGAAGAACTAAC 60.017 38.462 0.00 0.00 0.00 2.34
467 468 5.473504 TGGCTCTCATTTTGAAGAACTAACC 59.526 40.000 0.00 0.00 0.00 2.85
468 469 5.707764 GGCTCTCATTTTGAAGAACTAACCT 59.292 40.000 0.00 0.00 0.00 3.50
469 470 6.207614 GGCTCTCATTTTGAAGAACTAACCTT 59.792 38.462 0.00 0.00 0.00 3.50
470 471 7.390718 GGCTCTCATTTTGAAGAACTAACCTTA 59.609 37.037 0.00 0.00 0.00 2.69
471 472 8.447053 GCTCTCATTTTGAAGAACTAACCTTAG 58.553 37.037 0.00 0.00 36.82 2.18
472 473 9.712305 CTCTCATTTTGAAGAACTAACCTTAGA 57.288 33.333 0.00 0.00 34.84 2.10
473 474 9.490379 TCTCATTTTGAAGAACTAACCTTAGAC 57.510 33.333 0.00 0.00 34.84 2.59
474 475 9.273016 CTCATTTTGAAGAACTAACCTTAGACA 57.727 33.333 0.00 0.00 34.84 3.41
475 476 9.621629 TCATTTTGAAGAACTAACCTTAGACAA 57.378 29.630 0.00 0.00 34.84 3.18
476 477 9.884465 CATTTTGAAGAACTAACCTTAGACAAG 57.116 33.333 0.00 0.00 34.84 3.16
477 478 9.628500 ATTTTGAAGAACTAACCTTAGACAAGT 57.372 29.630 0.00 0.00 34.84 3.16
478 479 8.433421 TTTGAAGAACTAACCTTAGACAAGTG 57.567 34.615 0.00 0.00 34.84 3.16
479 480 7.120923 TGAAGAACTAACCTTAGACAAGTGT 57.879 36.000 0.00 0.00 34.84 3.55
480 481 6.984474 TGAAGAACTAACCTTAGACAAGTGTG 59.016 38.462 0.00 0.00 34.84 3.82
481 482 6.726490 AGAACTAACCTTAGACAAGTGTGA 57.274 37.500 0.00 0.00 34.84 3.58
482 483 6.514063 AGAACTAACCTTAGACAAGTGTGAC 58.486 40.000 0.00 0.00 34.84 3.67
483 484 5.864418 ACTAACCTTAGACAAGTGTGACA 57.136 39.130 0.00 0.00 34.84 3.58
484 485 6.229936 ACTAACCTTAGACAAGTGTGACAA 57.770 37.500 0.00 0.00 34.84 3.18
485 486 6.281405 ACTAACCTTAGACAAGTGTGACAAG 58.719 40.000 0.00 0.00 34.84 3.16
486 487 5.353394 AACCTTAGACAAGTGTGACAAGA 57.647 39.130 0.00 0.00 0.00 3.02
487 488 5.353394 ACCTTAGACAAGTGTGACAAGAA 57.647 39.130 0.00 0.00 0.00 2.52
488 489 5.741011 ACCTTAGACAAGTGTGACAAGAAA 58.259 37.500 0.00 0.00 0.00 2.52
489 490 6.357367 ACCTTAGACAAGTGTGACAAGAAAT 58.643 36.000 0.00 0.00 0.00 2.17
490 491 6.260936 ACCTTAGACAAGTGTGACAAGAAATG 59.739 38.462 0.00 0.00 0.00 2.32
492 493 5.490139 AGACAAGTGTGACAAGAAATGTG 57.510 39.130 0.00 0.00 44.12 3.21
493 494 4.943705 AGACAAGTGTGACAAGAAATGTGT 59.056 37.500 0.00 0.00 44.12 3.72
494 495 4.985413 ACAAGTGTGACAAGAAATGTGTG 58.015 39.130 0.00 0.00 44.12 3.82
495 496 4.142403 ACAAGTGTGACAAGAAATGTGTGG 60.142 41.667 0.00 0.00 44.12 4.17
496 497 2.358898 AGTGTGACAAGAAATGTGTGGC 59.641 45.455 0.00 0.00 44.12 5.01
497 498 2.098934 GTGTGACAAGAAATGTGTGGCA 59.901 45.455 0.00 0.00 44.12 4.92
498 499 2.757314 TGTGACAAGAAATGTGTGGCAA 59.243 40.909 0.00 0.00 44.12 4.52
499 500 3.194329 TGTGACAAGAAATGTGTGGCAAA 59.806 39.130 0.00 0.00 44.12 3.68
500 501 4.180057 GTGACAAGAAATGTGTGGCAAAA 58.820 39.130 0.00 0.00 44.12 2.44
501 502 4.810491 GTGACAAGAAATGTGTGGCAAAAT 59.190 37.500 0.00 0.00 44.12 1.82
502 503 4.809958 TGACAAGAAATGTGTGGCAAAATG 59.190 37.500 0.00 0.00 44.12 2.32
503 504 4.768583 ACAAGAAATGTGTGGCAAAATGT 58.231 34.783 0.00 0.00 41.93 2.71
504 505 4.571580 ACAAGAAATGTGTGGCAAAATGTG 59.428 37.500 0.00 0.00 41.93 3.21
505 506 3.731089 AGAAATGTGTGGCAAAATGTGG 58.269 40.909 0.00 0.00 0.00 4.17
515 516 3.169355 GCAAAATGTGGCATTCCTAGG 57.831 47.619 0.82 0.82 0.00 3.02
516 517 2.739609 GCAAAATGTGGCATTCCTAGGC 60.740 50.000 2.96 0.00 0.00 3.93
517 518 2.496871 CAAAATGTGGCATTCCTAGGCA 59.503 45.455 2.96 0.00 39.41 4.75
518 519 2.761786 AATGTGGCATTCCTAGGCAT 57.238 45.000 2.96 0.00 43.71 4.40
519 520 3.882102 AATGTGGCATTCCTAGGCATA 57.118 42.857 2.96 0.00 43.71 3.14
520 521 2.936919 TGTGGCATTCCTAGGCATAG 57.063 50.000 2.96 0.00 43.71 2.23
521 522 2.407562 TGTGGCATTCCTAGGCATAGA 58.592 47.619 7.04 0.00 43.71 1.98
522 523 2.777114 TGTGGCATTCCTAGGCATAGAA 59.223 45.455 7.04 0.00 43.71 2.10
523 524 3.142174 GTGGCATTCCTAGGCATAGAAC 58.858 50.000 7.04 0.00 43.71 3.01
524 525 2.106511 TGGCATTCCTAGGCATAGAACC 59.893 50.000 7.04 0.00 36.56 3.62
525 526 2.106511 GGCATTCCTAGGCATAGAACCA 59.893 50.000 7.04 0.00 31.29 3.67
526 527 3.435026 GGCATTCCTAGGCATAGAACCAA 60.435 47.826 7.04 0.00 31.29 3.67
527 528 4.207165 GCATTCCTAGGCATAGAACCAAA 58.793 43.478 7.04 0.00 0.00 3.28
528 529 4.036852 GCATTCCTAGGCATAGAACCAAAC 59.963 45.833 7.04 0.00 0.00 2.93
529 530 4.919774 TTCCTAGGCATAGAACCAAACA 57.080 40.909 7.04 0.00 0.00 2.83
530 531 4.487714 TCCTAGGCATAGAACCAAACAG 57.512 45.455 7.04 0.00 0.00 3.16
531 532 2.945668 CCTAGGCATAGAACCAAACAGC 59.054 50.000 7.04 0.00 0.00 4.40
532 533 1.839424 AGGCATAGAACCAAACAGCC 58.161 50.000 0.00 0.00 40.85 4.85
533 534 0.817654 GGCATAGAACCAAACAGCCC 59.182 55.000 0.00 0.00 34.71 5.19
534 535 0.817654 GCATAGAACCAAACAGCCCC 59.182 55.000 0.00 0.00 0.00 5.80
535 536 1.616994 GCATAGAACCAAACAGCCCCT 60.617 52.381 0.00 0.00 0.00 4.79
536 537 2.807676 CATAGAACCAAACAGCCCCTT 58.192 47.619 0.00 0.00 0.00 3.95
537 538 3.876156 GCATAGAACCAAACAGCCCCTTA 60.876 47.826 0.00 0.00 0.00 2.69
544 545 2.307686 CCAAACAGCCCCTTACTCCTTA 59.692 50.000 0.00 0.00 0.00 2.69
555 556 6.577638 GCCCCTTACTCCTTATGTTCTAAACA 60.578 42.308 0.00 0.00 46.94 2.83
556 557 6.822170 CCCCTTACTCCTTATGTTCTAAACAC 59.178 42.308 0.00 0.00 45.50 3.32
557 558 6.822170 CCCTTACTCCTTATGTTCTAAACACC 59.178 42.308 0.00 0.00 45.50 4.16
568 569 6.090483 TGTTCTAAACACCTCTCTCTCTTG 57.910 41.667 0.00 0.00 36.25 3.02
570 571 6.098409 TGTTCTAAACACCTCTCTCTCTTGTT 59.902 38.462 0.00 0.00 36.25 2.83
571 572 7.287005 TGTTCTAAACACCTCTCTCTCTTGTTA 59.713 37.037 0.00 0.00 36.25 2.41
573 574 7.831753 TCTAAACACCTCTCTCTCTTGTTATG 58.168 38.462 0.00 0.00 30.28 1.90
576 577 4.180057 CACCTCTCTCTCTTGTTATGTGC 58.820 47.826 0.00 0.00 0.00 4.57
577 578 4.081752 CACCTCTCTCTCTTGTTATGTGCT 60.082 45.833 0.00 0.00 0.00 4.40
599 1005 2.200792 TTTGTCCGTGTGCAAACATG 57.799 45.000 8.00 0.00 30.68 3.21
602 1008 0.661187 GTCCGTGTGCAAACATGCTG 60.661 55.000 8.00 0.00 35.49 4.41
640 1046 7.433680 TGTCGTATGTGATTTATCATGCTAGT 58.566 34.615 0.00 0.00 39.30 2.57
649 1055 8.895845 GTGATTTATCATGCTAGTAAATTTGCG 58.104 33.333 0.00 0.00 39.30 4.85
758 1179 3.330853 CTGCGCTCGGCCGTATTC 61.331 66.667 27.15 13.67 42.61 1.75
759 1180 4.884257 TGCGCTCGGCCGTATTCC 62.884 66.667 27.15 11.52 42.61 3.01
764 1185 0.179081 GCTCGGCCGTATTCCTTCTT 60.179 55.000 27.15 0.00 0.00 2.52
799 1220 1.300080 CTTGCCCAGTTTTGCCGTG 60.300 57.895 0.00 0.00 0.00 4.94
859 1286 1.007387 CAAAAGCCACCAGAACGCC 60.007 57.895 0.00 0.00 0.00 5.68
1200 1643 1.522355 CGCGGTCATCCTCATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
1419 1868 4.724602 GTCTGCCTCGACGCTGCA 62.725 66.667 7.89 10.09 0.00 4.41
1561 2010 1.356979 GTCAGCTGATCGCGAGCTA 59.643 57.895 26.10 10.92 45.24 3.32
1563 2012 1.659954 CAGCTGATCGCGAGCTACC 60.660 63.158 26.10 13.07 45.24 3.18
1568 2017 3.559657 GATCGCGAGCTACCGGCAT 62.560 63.158 18.63 0.00 44.79 4.40
1590 2039 0.179215 GACGGCATCAAGAAGTTGCG 60.179 55.000 0.00 0.00 42.57 4.85
1618 2092 1.144298 AGGGCTGTAAAGGTTCGGTTT 59.856 47.619 0.00 0.00 0.00 3.27
1650 2124 3.607370 GACGAAAAGCCTCCCCGCT 62.607 63.158 0.00 0.00 42.22 5.52
1664 2138 0.247736 CCCGCTTTGCTCTGTAGTCT 59.752 55.000 0.00 0.00 0.00 3.24
1665 2139 1.476891 CCCGCTTTGCTCTGTAGTCTA 59.523 52.381 0.00 0.00 0.00 2.59
1666 2140 2.480416 CCCGCTTTGCTCTGTAGTCTAG 60.480 54.545 0.00 0.00 0.00 2.43
1667 2141 2.189342 CGCTTTGCTCTGTAGTCTAGC 58.811 52.381 0.00 0.00 36.77 3.42
1827 2310 1.106351 TGCTCGTGGTGCCAATTGTT 61.106 50.000 4.43 0.00 0.00 2.83
1842 2325 5.004345 GCCAATTGTTAATTGTGATGCGTAC 59.996 40.000 4.43 0.00 45.28 3.67
2046 3928 9.918630 AGATGAAAATGAGTTTCTAAAACATGG 57.081 29.630 6.92 0.00 45.14 3.66
2126 4008 7.867909 TGTTCTGTTCTTATCAGTGTAGTTCTG 59.132 37.037 0.00 0.00 34.86 3.02
2261 4147 7.201884 CCCCTTCTATAATCACGAAACTCACTA 60.202 40.741 0.00 0.00 0.00 2.74
2281 4167 8.347004 TCACTAATTCATGGCTTGAACAATAA 57.653 30.769 16.89 0.00 46.80 1.40
2344 4235 5.705400 TGTTTCCCTCTCCAAAAAGAGAAT 58.295 37.500 2.53 0.00 44.67 2.40
2388 4280 6.894103 ACCTTTATGAGCCTTCATTGATTCTT 59.106 34.615 0.00 0.00 41.24 2.52
2428 4331 8.575649 ACGGACCAATAAATAGATTTGAAAGT 57.424 30.769 0.00 0.00 0.00 2.66
2467 4370 5.871524 TGAGAGCTTGACATCATTTACAGTC 59.128 40.000 0.00 0.00 0.00 3.51
2479 4382 5.479306 TCATTTACAGTCTTACACTCAGCC 58.521 41.667 0.00 0.00 30.26 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.310233 CGTGGAGGCGTCACAACAG 61.310 63.158 8.91 0.00 35.03 3.16
1 2 2.279851 CGTGGAGGCGTCACAACA 60.280 61.111 8.91 0.00 35.03 3.33
21 22 2.746277 GTGCACACGGATGGGGTC 60.746 66.667 13.17 0.00 0.00 4.46
39 40 2.521958 AAAGACATGGTCTCCCGGCG 62.522 60.000 0.00 0.00 42.59 6.46
40 41 1.026718 CAAAGACATGGTCTCCCGGC 61.027 60.000 0.00 0.00 42.59 6.13
43 44 2.820197 GGTTTCAAAGACATGGTCTCCC 59.180 50.000 0.00 0.00 42.59 4.30
54 55 4.004314 TCACAAGACAACGGTTTCAAAGA 58.996 39.130 0.00 0.00 0.00 2.52
56 57 4.004314 TCTCACAAGACAACGGTTTCAAA 58.996 39.130 0.00 0.00 0.00 2.69
62 63 1.485066 AGGTTCTCACAAGACAACGGT 59.515 47.619 0.00 0.00 0.00 4.83
67 68 2.880268 CAATGCAGGTTCTCACAAGACA 59.120 45.455 0.00 0.00 0.00 3.41
99 100 2.702261 ACGCGCTCCCTTAAAACATTA 58.298 42.857 5.73 0.00 0.00 1.90
108 109 4.452733 GCACCTACGCGCTCCCTT 62.453 66.667 5.73 0.00 0.00 3.95
117 118 3.750162 CGAACAGTCGCACCTACG 58.250 61.111 0.00 0.00 41.08 3.51
130 131 2.750948 TGTAGTTGACCTTGAGCGAAC 58.249 47.619 0.00 0.00 0.00 3.95
134 135 3.618690 AGGATGTAGTTGACCTTGAGC 57.381 47.619 0.00 0.00 0.00 4.26
137 138 5.411669 GTGGTTAAGGATGTAGTTGACCTTG 59.588 44.000 0.00 0.00 41.86 3.61
141 142 3.370061 GCGTGGTTAAGGATGTAGTTGAC 59.630 47.826 0.00 0.00 0.00 3.18
143 144 2.676342 GGCGTGGTTAAGGATGTAGTTG 59.324 50.000 0.00 0.00 0.00 3.16
154 155 1.373748 GCAGACGAGGCGTGGTTAA 60.374 57.895 0.00 0.00 41.37 2.01
162 163 0.101579 GTAGAGGAAGCAGACGAGGC 59.898 60.000 0.00 0.00 0.00 4.70
167 168 2.165437 CTCCACTGTAGAGGAAGCAGAC 59.835 54.545 0.00 0.00 34.44 3.51
184 185 0.615331 GAAGATGAGGTGGTGCTCCA 59.385 55.000 2.64 2.64 42.05 3.86
192 193 2.795231 ATGGTGGTGAAGATGAGGTG 57.205 50.000 0.00 0.00 0.00 4.00
225 226 2.149555 CCGAAAATTTTGGCACGGC 58.850 52.632 8.47 0.00 34.36 5.68
233 234 5.270893 AGTACCAGTTTGCCGAAAATTTT 57.729 34.783 2.28 2.28 0.00 1.82
236 237 4.457949 CCTAAGTACCAGTTTGCCGAAAAT 59.542 41.667 0.00 0.00 0.00 1.82
237 238 3.816523 CCTAAGTACCAGTTTGCCGAAAA 59.183 43.478 0.00 0.00 0.00 2.29
258 259 0.104120 GTCACAAACCAAACAGCCCC 59.896 55.000 0.00 0.00 0.00 5.80
259 260 1.111277 AGTCACAAACCAAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
260 261 3.305335 CCATAGTCACAAACCAAACAGCC 60.305 47.826 0.00 0.00 0.00 4.85
261 262 3.317993 ACCATAGTCACAAACCAAACAGC 59.682 43.478 0.00 0.00 0.00 4.40
262 263 5.280945 CAACCATAGTCACAAACCAAACAG 58.719 41.667 0.00 0.00 0.00 3.16
263 264 4.440802 GCAACCATAGTCACAAACCAAACA 60.441 41.667 0.00 0.00 0.00 2.83
264 265 4.048504 GCAACCATAGTCACAAACCAAAC 58.951 43.478 0.00 0.00 0.00 2.93
265 266 3.068873 GGCAACCATAGTCACAAACCAAA 59.931 43.478 0.00 0.00 0.00 3.28
266 267 2.625790 GGCAACCATAGTCACAAACCAA 59.374 45.455 0.00 0.00 0.00 3.67
267 268 2.235016 GGCAACCATAGTCACAAACCA 58.765 47.619 0.00 0.00 0.00 3.67
268 269 2.030274 GTGGCAACCATAGTCACAAACC 60.030 50.000 0.00 0.00 35.28 3.27
269 270 2.621055 TGTGGCAACCATAGTCACAAAC 59.379 45.455 0.00 0.00 35.28 2.93
270 271 2.937519 TGTGGCAACCATAGTCACAAA 58.062 42.857 0.00 0.00 35.28 2.83
271 272 2.647683 TGTGGCAACCATAGTCACAA 57.352 45.000 0.00 0.00 35.28 3.33
272 273 2.224744 ACATGTGGCAACCATAGTCACA 60.225 45.455 0.00 2.94 41.64 3.58
273 274 2.436417 ACATGTGGCAACCATAGTCAC 58.564 47.619 0.00 0.00 35.28 3.67
274 275 2.819019 CAACATGTGGCAACCATAGTCA 59.181 45.455 0.00 0.00 35.28 3.41
275 276 2.415893 GCAACATGTGGCAACCATAGTC 60.416 50.000 20.70 0.00 35.28 2.59
276 277 1.545582 GCAACATGTGGCAACCATAGT 59.454 47.619 20.70 0.00 35.28 2.12
277 278 2.282701 GCAACATGTGGCAACCATAG 57.717 50.000 20.70 0.00 35.28 2.23
291 292 4.041075 TGACTAACCTTAGATGTGGCAACA 59.959 41.667 0.00 0.00 38.25 3.33
292 293 4.575885 TGACTAACCTTAGATGTGGCAAC 58.424 43.478 0.00 0.00 34.84 4.17
293 294 4.901197 TGACTAACCTTAGATGTGGCAA 57.099 40.909 0.00 0.00 34.84 4.52
294 295 4.286032 AGTTGACTAACCTTAGATGTGGCA 59.714 41.667 0.00 0.00 37.52 4.92
295 296 4.833390 AGTTGACTAACCTTAGATGTGGC 58.167 43.478 0.00 0.00 37.52 5.01
296 297 6.934645 TCAAAGTTGACTAACCTTAGATGTGG 59.065 38.462 0.00 0.00 37.52 4.17
297 298 7.962964 TCAAAGTTGACTAACCTTAGATGTG 57.037 36.000 0.00 0.00 37.52 3.21
312 313 4.445735 CCCTCCTAAGTTGGTCAAAGTTGA 60.446 45.833 0.00 0.00 33.37 3.18
313 314 3.821033 CCCTCCTAAGTTGGTCAAAGTTG 59.179 47.826 0.00 0.00 33.37 3.16
314 315 3.462205 ACCCTCCTAAGTTGGTCAAAGTT 59.538 43.478 0.00 0.00 35.53 2.66
315 316 3.053826 ACCCTCCTAAGTTGGTCAAAGT 58.946 45.455 0.00 0.00 0.00 2.66
316 317 3.181443 ACACCCTCCTAAGTTGGTCAAAG 60.181 47.826 0.00 0.00 0.00 2.77
317 318 2.781174 ACACCCTCCTAAGTTGGTCAAA 59.219 45.455 0.00 0.00 0.00 2.69
318 319 2.414612 ACACCCTCCTAAGTTGGTCAA 58.585 47.619 0.00 0.00 0.00 3.18
319 320 2.112279 ACACCCTCCTAAGTTGGTCA 57.888 50.000 0.00 0.00 0.00 4.02
320 321 3.146847 CAAACACCCTCCTAAGTTGGTC 58.853 50.000 0.00 0.00 0.00 4.02
321 322 2.158519 CCAAACACCCTCCTAAGTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
322 323 2.158519 ACCAAACACCCTCCTAAGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
323 324 3.223674 ACCAAACACCCTCCTAAGTTG 57.776 47.619 0.00 0.00 0.00 3.16
324 325 3.203487 TGAACCAAACACCCTCCTAAGTT 59.797 43.478 0.00 0.00 0.00 2.66
325 326 2.781174 TGAACCAAACACCCTCCTAAGT 59.219 45.455 0.00 0.00 0.00 2.24
326 327 3.502123 TGAACCAAACACCCTCCTAAG 57.498 47.619 0.00 0.00 0.00 2.18
327 328 3.827722 CTTGAACCAAACACCCTCCTAA 58.172 45.455 0.00 0.00 0.00 2.69
328 329 2.488347 GCTTGAACCAAACACCCTCCTA 60.488 50.000 0.00 0.00 0.00 2.94
329 330 1.754201 GCTTGAACCAAACACCCTCCT 60.754 52.381 0.00 0.00 0.00 3.69
330 331 0.673985 GCTTGAACCAAACACCCTCC 59.326 55.000 0.00 0.00 0.00 4.30
331 332 0.673985 GGCTTGAACCAAACACCCTC 59.326 55.000 0.00 0.00 0.00 4.30
332 333 0.261696 AGGCTTGAACCAAACACCCT 59.738 50.000 0.00 0.00 0.00 4.34
333 334 1.119684 AAGGCTTGAACCAAACACCC 58.880 50.000 0.00 0.00 0.00 4.61
334 335 2.035449 GGTAAGGCTTGAACCAAACACC 59.965 50.000 10.69 1.90 33.28 4.16
335 336 2.956333 AGGTAAGGCTTGAACCAAACAC 59.044 45.455 18.86 2.67 35.64 3.32
336 337 3.306472 AGGTAAGGCTTGAACCAAACA 57.694 42.857 18.86 0.00 35.64 2.83
337 338 4.217767 CCTAAGGTAAGGCTTGAACCAAAC 59.782 45.833 18.86 4.03 35.64 2.93
338 339 4.403734 CCTAAGGTAAGGCTTGAACCAAA 58.596 43.478 18.86 7.41 35.64 3.28
339 340 4.028993 CCTAAGGTAAGGCTTGAACCAA 57.971 45.455 18.86 7.71 35.64 3.67
340 341 3.713826 CCTAAGGTAAGGCTTGAACCA 57.286 47.619 18.86 1.44 35.64 3.67
349 350 8.135529 GCAAAAAGTATATTGCCTAAGGTAAGG 58.864 37.037 0.00 0.00 44.72 2.69
361 362 6.795399 CCCTAGTGTGGCAAAAAGTATATTG 58.205 40.000 0.00 0.00 0.00 1.90
375 376 2.037772 GTCATATGAGGCCCTAGTGTGG 59.962 54.545 5.42 0.00 0.00 4.17
376 377 2.700371 TGTCATATGAGGCCCTAGTGTG 59.300 50.000 5.42 0.00 0.00 3.82
377 378 3.046283 TGTCATATGAGGCCCTAGTGT 57.954 47.619 5.42 0.00 0.00 3.55
378 379 4.528206 TGTATGTCATATGAGGCCCTAGTG 59.472 45.833 5.42 0.00 0.00 2.74
379 380 4.528596 GTGTATGTCATATGAGGCCCTAGT 59.471 45.833 5.42 0.00 0.00 2.57
380 381 4.774726 AGTGTATGTCATATGAGGCCCTAG 59.225 45.833 5.42 0.00 0.00 3.02
381 382 4.752063 AGTGTATGTCATATGAGGCCCTA 58.248 43.478 5.42 0.00 0.00 3.53
382 383 3.580458 GAGTGTATGTCATATGAGGCCCT 59.420 47.826 5.42 0.00 0.00 5.19
383 384 3.324846 TGAGTGTATGTCATATGAGGCCC 59.675 47.826 5.42 0.00 0.00 5.80
384 385 4.607293 TGAGTGTATGTCATATGAGGCC 57.393 45.455 5.42 0.00 0.00 5.19
385 386 6.925610 TTTTGAGTGTATGTCATATGAGGC 57.074 37.500 5.42 0.00 0.00 4.70
386 387 8.498054 ACTTTTTGAGTGTATGTCATATGAGG 57.502 34.615 5.42 0.00 37.17 3.86
390 391 8.840321 GCCATACTTTTTGAGTGTATGTCATAT 58.160 33.333 0.00 0.00 40.85 1.78
391 392 7.826744 TGCCATACTTTTTGAGTGTATGTCATA 59.173 33.333 0.00 0.00 40.85 2.15
392 393 6.658816 TGCCATACTTTTTGAGTGTATGTCAT 59.341 34.615 0.00 0.00 40.85 3.06
393 394 6.000840 TGCCATACTTTTTGAGTGTATGTCA 58.999 36.000 0.00 0.00 40.85 3.58
394 395 6.494893 TGCCATACTTTTTGAGTGTATGTC 57.505 37.500 0.00 0.00 40.85 3.06
395 396 6.714810 TCTTGCCATACTTTTTGAGTGTATGT 59.285 34.615 0.00 0.00 40.85 2.29
396 397 7.144722 TCTTGCCATACTTTTTGAGTGTATG 57.855 36.000 0.00 0.00 41.62 2.39
397 398 7.944729 ATCTTGCCATACTTTTTGAGTGTAT 57.055 32.000 0.00 0.00 39.48 2.29
398 399 7.094377 GGAATCTTGCCATACTTTTTGAGTGTA 60.094 37.037 0.00 0.00 39.48 2.90
399 400 6.294731 GGAATCTTGCCATACTTTTTGAGTGT 60.295 38.462 0.00 0.00 39.48 3.55
400 401 6.095377 GGAATCTTGCCATACTTTTTGAGTG 58.905 40.000 0.00 0.00 39.48 3.51
401 402 5.185828 GGGAATCTTGCCATACTTTTTGAGT 59.814 40.000 0.00 0.00 39.30 3.41
402 403 5.420104 AGGGAATCTTGCCATACTTTTTGAG 59.580 40.000 3.19 0.00 41.75 3.02
403 404 5.332743 AGGGAATCTTGCCATACTTTTTGA 58.667 37.500 3.19 0.00 41.75 2.69
404 405 5.665916 AGGGAATCTTGCCATACTTTTTG 57.334 39.130 3.19 0.00 41.75 2.44
405 406 6.381133 CCTAAGGGAATCTTGCCATACTTTTT 59.619 38.462 3.19 0.00 41.75 1.94
406 407 5.893824 CCTAAGGGAATCTTGCCATACTTTT 59.106 40.000 3.19 0.00 41.75 2.27
407 408 5.449553 CCTAAGGGAATCTTGCCATACTTT 58.550 41.667 3.19 0.00 41.75 2.66
408 409 4.689983 GCCTAAGGGAATCTTGCCATACTT 60.690 45.833 3.19 0.00 41.75 2.24
409 410 3.181439 GCCTAAGGGAATCTTGCCATACT 60.181 47.826 3.19 0.00 41.75 2.12
410 411 3.149981 GCCTAAGGGAATCTTGCCATAC 58.850 50.000 3.19 0.00 41.75 2.39
411 412 3.056080 AGCCTAAGGGAATCTTGCCATA 58.944 45.455 3.19 0.00 41.75 2.74
412 413 1.855599 AGCCTAAGGGAATCTTGCCAT 59.144 47.619 3.19 0.00 41.75 4.40
413 414 1.298953 AGCCTAAGGGAATCTTGCCA 58.701 50.000 3.19 0.00 41.75 4.92
414 415 2.027385 CAAGCCTAAGGGAATCTTGCC 58.973 52.381 0.00 0.00 39.23 4.52
415 416 1.406898 GCAAGCCTAAGGGAATCTTGC 59.593 52.381 13.14 13.14 43.47 4.01
416 417 3.010200 AGCAAGCCTAAGGGAATCTTG 57.990 47.619 0.00 0.00 36.93 3.02
417 418 4.228438 AGTTAGCAAGCCTAAGGGAATCTT 59.772 41.667 0.00 0.00 36.72 2.40
418 419 3.783082 AGTTAGCAAGCCTAAGGGAATCT 59.217 43.478 0.00 0.00 36.72 2.40
419 420 4.157849 AGTTAGCAAGCCTAAGGGAATC 57.842 45.455 0.00 0.00 36.72 2.52
420 421 4.263949 ACAAGTTAGCAAGCCTAAGGGAAT 60.264 41.667 0.00 0.00 36.72 3.01
421 422 3.073946 ACAAGTTAGCAAGCCTAAGGGAA 59.926 43.478 0.00 0.00 36.72 3.97
422 423 2.642807 ACAAGTTAGCAAGCCTAAGGGA 59.357 45.455 0.00 0.00 36.72 4.20
423 424 2.749621 CACAAGTTAGCAAGCCTAAGGG 59.250 50.000 0.00 0.00 36.72 3.95
424 425 2.749621 CCACAAGTTAGCAAGCCTAAGG 59.250 50.000 0.00 0.00 36.72 2.69
425 426 2.162408 GCCACAAGTTAGCAAGCCTAAG 59.838 50.000 0.00 0.00 36.72 2.18
426 427 2.159382 GCCACAAGTTAGCAAGCCTAA 58.841 47.619 0.00 0.00 33.69 2.69
427 428 1.351017 AGCCACAAGTTAGCAAGCCTA 59.649 47.619 0.00 0.00 0.00 3.93
428 429 0.111253 AGCCACAAGTTAGCAAGCCT 59.889 50.000 0.00 0.00 0.00 4.58
429 430 0.523519 GAGCCACAAGTTAGCAAGCC 59.476 55.000 0.00 0.00 0.00 4.35
430 431 1.466558 GAGAGCCACAAGTTAGCAAGC 59.533 52.381 0.00 0.00 0.00 4.01
431 432 2.771089 TGAGAGCCACAAGTTAGCAAG 58.229 47.619 0.00 0.00 0.00 4.01
432 433 2.928801 TGAGAGCCACAAGTTAGCAA 57.071 45.000 0.00 0.00 0.00 3.91
433 434 3.423539 AATGAGAGCCACAAGTTAGCA 57.576 42.857 0.00 0.00 0.00 3.49
434 435 4.216257 TCAAAATGAGAGCCACAAGTTAGC 59.784 41.667 0.00 0.00 0.00 3.09
435 436 5.947228 TCAAAATGAGAGCCACAAGTTAG 57.053 39.130 0.00 0.00 0.00 2.34
436 437 6.061441 TCTTCAAAATGAGAGCCACAAGTTA 58.939 36.000 0.00 0.00 0.00 2.24
437 438 4.889409 TCTTCAAAATGAGAGCCACAAGTT 59.111 37.500 0.00 0.00 0.00 2.66
438 439 4.464008 TCTTCAAAATGAGAGCCACAAGT 58.536 39.130 0.00 0.00 0.00 3.16
439 440 5.009410 AGTTCTTCAAAATGAGAGCCACAAG 59.991 40.000 0.00 0.00 0.00 3.16
440 441 4.889409 AGTTCTTCAAAATGAGAGCCACAA 59.111 37.500 0.00 0.00 0.00 3.33
441 442 4.464008 AGTTCTTCAAAATGAGAGCCACA 58.536 39.130 0.00 0.00 0.00 4.17
442 443 6.374578 GTTAGTTCTTCAAAATGAGAGCCAC 58.625 40.000 0.00 0.00 0.00 5.01
443 444 5.473504 GGTTAGTTCTTCAAAATGAGAGCCA 59.526 40.000 0.00 0.00 0.00 4.75
444 445 5.707764 AGGTTAGTTCTTCAAAATGAGAGCC 59.292 40.000 0.00 0.00 0.00 4.70
445 446 6.809630 AGGTTAGTTCTTCAAAATGAGAGC 57.190 37.500 0.00 0.00 0.00 4.09
446 447 9.712305 TCTAAGGTTAGTTCTTCAAAATGAGAG 57.288 33.333 0.00 0.00 32.61 3.20
447 448 9.490379 GTCTAAGGTTAGTTCTTCAAAATGAGA 57.510 33.333 0.00 0.00 32.61 3.27
448 449 9.273016 TGTCTAAGGTTAGTTCTTCAAAATGAG 57.727 33.333 0.00 0.00 32.61 2.90
449 450 9.621629 TTGTCTAAGGTTAGTTCTTCAAAATGA 57.378 29.630 0.00 0.00 32.61 2.57
450 451 9.884465 CTTGTCTAAGGTTAGTTCTTCAAAATG 57.116 33.333 0.00 0.00 32.61 2.32
451 452 9.628500 ACTTGTCTAAGGTTAGTTCTTCAAAAT 57.372 29.630 0.00 0.00 38.26 1.82
452 453 8.889717 CACTTGTCTAAGGTTAGTTCTTCAAAA 58.110 33.333 0.00 0.00 38.26 2.44
453 454 8.044908 ACACTTGTCTAAGGTTAGTTCTTCAAA 58.955 33.333 0.00 0.00 38.26 2.69
454 455 7.494625 CACACTTGTCTAAGGTTAGTTCTTCAA 59.505 37.037 0.00 0.00 38.26 2.69
455 456 6.984474 CACACTTGTCTAAGGTTAGTTCTTCA 59.016 38.462 0.00 0.00 38.26 3.02
456 457 7.169476 GTCACACTTGTCTAAGGTTAGTTCTTC 59.831 40.741 0.00 0.00 38.26 2.87
457 458 6.985059 GTCACACTTGTCTAAGGTTAGTTCTT 59.015 38.462 0.00 0.00 38.26 2.52
458 459 6.097839 TGTCACACTTGTCTAAGGTTAGTTCT 59.902 38.462 0.00 0.00 38.26 3.01
459 460 6.278363 TGTCACACTTGTCTAAGGTTAGTTC 58.722 40.000 0.00 0.00 38.26 3.01
460 461 6.229936 TGTCACACTTGTCTAAGGTTAGTT 57.770 37.500 0.00 0.00 38.26 2.24
461 462 5.864418 TGTCACACTTGTCTAAGGTTAGT 57.136 39.130 0.00 0.00 38.26 2.24
462 463 6.513180 TCTTGTCACACTTGTCTAAGGTTAG 58.487 40.000 0.00 0.00 38.26 2.34
463 464 6.474140 TCTTGTCACACTTGTCTAAGGTTA 57.526 37.500 0.00 0.00 38.26 2.85
464 465 5.353394 TCTTGTCACACTTGTCTAAGGTT 57.647 39.130 0.00 0.00 38.26 3.50
465 466 5.353394 TTCTTGTCACACTTGTCTAAGGT 57.647 39.130 0.00 0.00 38.26 3.50
466 467 6.260936 ACATTTCTTGTCACACTTGTCTAAGG 59.739 38.462 0.00 0.00 33.97 2.69
467 468 7.128331 CACATTTCTTGTCACACTTGTCTAAG 58.872 38.462 0.00 0.00 36.00 2.18
468 469 6.597672 ACACATTTCTTGTCACACTTGTCTAA 59.402 34.615 0.00 0.00 36.00 2.10
469 470 6.037062 CACACATTTCTTGTCACACTTGTCTA 59.963 38.462 0.00 0.00 36.00 2.59
470 471 4.943705 ACACATTTCTTGTCACACTTGTCT 59.056 37.500 0.00 0.00 36.00 3.41
471 472 5.030295 CACACATTTCTTGTCACACTTGTC 58.970 41.667 0.00 0.00 36.00 3.18
472 473 4.142403 CCACACATTTCTTGTCACACTTGT 60.142 41.667 0.00 0.00 36.00 3.16
473 474 4.353737 CCACACATTTCTTGTCACACTTG 58.646 43.478 0.00 0.00 36.00 3.16
474 475 3.181487 GCCACACATTTCTTGTCACACTT 60.181 43.478 0.00 0.00 36.00 3.16
475 476 2.358898 GCCACACATTTCTTGTCACACT 59.641 45.455 0.00 0.00 36.00 3.55
476 477 2.098934 TGCCACACATTTCTTGTCACAC 59.901 45.455 0.00 0.00 36.00 3.82
477 478 2.373224 TGCCACACATTTCTTGTCACA 58.627 42.857 0.00 0.00 36.00 3.58
478 479 3.435105 TTGCCACACATTTCTTGTCAC 57.565 42.857 0.00 0.00 36.00 3.67
479 480 4.462508 TTTTGCCACACATTTCTTGTCA 57.537 36.364 0.00 0.00 36.00 3.58
480 481 4.810491 ACATTTTGCCACACATTTCTTGTC 59.190 37.500 0.00 0.00 36.00 3.18
481 482 4.571580 CACATTTTGCCACACATTTCTTGT 59.428 37.500 0.00 0.00 39.91 3.16
482 483 4.024725 CCACATTTTGCCACACATTTCTTG 60.025 41.667 0.00 0.00 0.00 3.02
483 484 4.128643 CCACATTTTGCCACACATTTCTT 58.871 39.130 0.00 0.00 0.00 2.52
484 485 3.731089 CCACATTTTGCCACACATTTCT 58.269 40.909 0.00 0.00 0.00 2.52
485 486 2.223845 GCCACATTTTGCCACACATTTC 59.776 45.455 0.00 0.00 0.00 2.17
486 487 2.220313 GCCACATTTTGCCACACATTT 58.780 42.857 0.00 0.00 0.00 2.32
487 488 1.140452 TGCCACATTTTGCCACACATT 59.860 42.857 0.00 0.00 0.00 2.71
488 489 0.757512 TGCCACATTTTGCCACACAT 59.242 45.000 0.00 0.00 0.00 3.21
489 490 0.757512 ATGCCACATTTTGCCACACA 59.242 45.000 0.00 0.00 0.00 3.72
490 491 1.799994 GAATGCCACATTTTGCCACAC 59.200 47.619 0.00 0.00 0.00 3.82
491 492 1.270732 GGAATGCCACATTTTGCCACA 60.271 47.619 0.00 0.00 0.00 4.17
492 493 1.002315 AGGAATGCCACATTTTGCCAC 59.998 47.619 0.00 0.00 36.29 5.01
493 494 1.350071 AGGAATGCCACATTTTGCCA 58.650 45.000 0.00 0.00 36.29 4.92
494 495 2.159057 CCTAGGAATGCCACATTTTGCC 60.159 50.000 1.05 0.00 36.29 4.52
495 496 2.739609 GCCTAGGAATGCCACATTTTGC 60.740 50.000 14.75 0.00 36.29 3.68
496 497 2.496871 TGCCTAGGAATGCCACATTTTG 59.503 45.455 14.75 0.00 36.29 2.44
497 498 2.818921 TGCCTAGGAATGCCACATTTT 58.181 42.857 14.75 0.00 36.29 1.82
498 499 2.530460 TGCCTAGGAATGCCACATTT 57.470 45.000 14.75 0.00 36.29 2.32
499 500 2.761786 ATGCCTAGGAATGCCACATT 57.238 45.000 14.75 0.00 36.29 2.71
500 501 2.981784 TCTATGCCTAGGAATGCCACAT 59.018 45.455 14.75 6.99 36.29 3.21
501 502 2.407562 TCTATGCCTAGGAATGCCACA 58.592 47.619 14.75 0.00 36.29 4.17
502 503 3.142174 GTTCTATGCCTAGGAATGCCAC 58.858 50.000 14.75 2.02 36.29 5.01
503 504 2.106511 GGTTCTATGCCTAGGAATGCCA 59.893 50.000 14.75 0.00 36.29 4.92
504 505 2.106511 TGGTTCTATGCCTAGGAATGCC 59.893 50.000 14.75 9.92 0.00 4.40
505 506 3.492102 TGGTTCTATGCCTAGGAATGC 57.508 47.619 14.75 0.00 0.00 3.56
506 507 5.192927 TGTTTGGTTCTATGCCTAGGAATG 58.807 41.667 14.75 2.78 0.00 2.67
507 508 5.440610 CTGTTTGGTTCTATGCCTAGGAAT 58.559 41.667 14.75 10.99 0.00 3.01
508 509 4.843728 CTGTTTGGTTCTATGCCTAGGAA 58.156 43.478 14.75 0.50 0.00 3.36
509 510 3.370527 GCTGTTTGGTTCTATGCCTAGGA 60.371 47.826 14.75 0.00 0.00 2.94
510 511 2.945668 GCTGTTTGGTTCTATGCCTAGG 59.054 50.000 3.67 3.67 0.00 3.02
511 512 2.945668 GGCTGTTTGGTTCTATGCCTAG 59.054 50.000 0.00 0.00 36.32 3.02
512 513 2.356741 GGGCTGTTTGGTTCTATGCCTA 60.357 50.000 0.00 0.00 38.93 3.93
513 514 1.616994 GGGCTGTTTGGTTCTATGCCT 60.617 52.381 0.00 0.00 38.93 4.75
514 515 0.817654 GGGCTGTTTGGTTCTATGCC 59.182 55.000 0.00 0.00 38.28 4.40
515 516 0.817654 GGGGCTGTTTGGTTCTATGC 59.182 55.000 0.00 0.00 0.00 3.14
516 517 2.514458 AGGGGCTGTTTGGTTCTATG 57.486 50.000 0.00 0.00 0.00 2.23
517 518 3.591977 AGTAAGGGGCTGTTTGGTTCTAT 59.408 43.478 0.00 0.00 0.00 1.98
518 519 2.983898 AGTAAGGGGCTGTTTGGTTCTA 59.016 45.455 0.00 0.00 0.00 2.10
519 520 1.780919 AGTAAGGGGCTGTTTGGTTCT 59.219 47.619 0.00 0.00 0.00 3.01
520 521 2.160205 GAGTAAGGGGCTGTTTGGTTC 58.840 52.381 0.00 0.00 0.00 3.62
521 522 1.203013 GGAGTAAGGGGCTGTTTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
522 523 0.404426 GGAGTAAGGGGCTGTTTGGT 59.596 55.000 0.00 0.00 0.00 3.67
523 524 0.698818 AGGAGTAAGGGGCTGTTTGG 59.301 55.000 0.00 0.00 0.00 3.28
524 525 2.586648 AAGGAGTAAGGGGCTGTTTG 57.413 50.000 0.00 0.00 0.00 2.93
525 526 3.591977 ACATAAGGAGTAAGGGGCTGTTT 59.408 43.478 0.00 0.00 0.00 2.83
526 527 3.190439 ACATAAGGAGTAAGGGGCTGTT 58.810 45.455 0.00 0.00 0.00 3.16
527 528 2.846950 ACATAAGGAGTAAGGGGCTGT 58.153 47.619 0.00 0.00 0.00 4.40
528 529 3.456277 AGAACATAAGGAGTAAGGGGCTG 59.544 47.826 0.00 0.00 0.00 4.85
529 530 3.737263 AGAACATAAGGAGTAAGGGGCT 58.263 45.455 0.00 0.00 0.00 5.19
530 531 5.625568 TTAGAACATAAGGAGTAAGGGGC 57.374 43.478 0.00 0.00 0.00 5.80
531 532 6.822170 GTGTTTAGAACATAAGGAGTAAGGGG 59.178 42.308 0.00 0.00 44.35 4.79
532 533 6.822170 GGTGTTTAGAACATAAGGAGTAAGGG 59.178 42.308 0.00 0.00 44.35 3.95
533 534 7.621796 AGGTGTTTAGAACATAAGGAGTAAGG 58.378 38.462 0.00 0.00 44.35 2.69
534 535 8.532819 AGAGGTGTTTAGAACATAAGGAGTAAG 58.467 37.037 0.00 0.00 44.35 2.34
535 536 8.431910 AGAGGTGTTTAGAACATAAGGAGTAA 57.568 34.615 0.00 0.00 44.35 2.24
536 537 7.894364 AGAGAGGTGTTTAGAACATAAGGAGTA 59.106 37.037 0.00 0.00 44.35 2.59
537 538 6.726764 AGAGAGGTGTTTAGAACATAAGGAGT 59.273 38.462 0.00 0.00 44.35 3.85
544 545 6.268847 ACAAGAGAGAGAGGTGTTTAGAACAT 59.731 38.462 0.00 0.00 44.35 2.71
555 556 4.093011 AGCACATAACAAGAGAGAGAGGT 58.907 43.478 0.00 0.00 0.00 3.85
556 557 4.734398 AGCACATAACAAGAGAGAGAGG 57.266 45.455 0.00 0.00 0.00 3.69
557 558 7.432350 AAAAAGCACATAACAAGAGAGAGAG 57.568 36.000 0.00 0.00 0.00 3.20
599 1005 2.802816 ACGACAGACAAGAAACATCAGC 59.197 45.455 0.00 0.00 0.00 4.26
602 1008 5.633601 TCACATACGACAGACAAGAAACATC 59.366 40.000 0.00 0.00 0.00 3.06
612 1018 6.422100 AGCATGATAAATCACATACGACAGAC 59.578 38.462 0.00 0.00 40.03 3.51
752 1173 9.840427 AACATGTGAATAAAAAGAAGGAATACG 57.160 29.630 0.00 0.00 0.00 3.06
755 1176 7.542130 GCGAACATGTGAATAAAAAGAAGGAAT 59.458 33.333 0.00 0.00 0.00 3.01
756 1177 6.861055 GCGAACATGTGAATAAAAAGAAGGAA 59.139 34.615 0.00 0.00 0.00 3.36
757 1178 6.206634 AGCGAACATGTGAATAAAAAGAAGGA 59.793 34.615 0.00 0.00 0.00 3.36
758 1179 6.381801 AGCGAACATGTGAATAAAAAGAAGG 58.618 36.000 0.00 0.00 0.00 3.46
759 1180 7.617935 GCAAGCGAACATGTGAATAAAAAGAAG 60.618 37.037 0.00 0.00 0.00 2.85
764 1185 4.233789 GGCAAGCGAACATGTGAATAAAA 58.766 39.130 0.00 0.00 0.00 1.52
799 1220 2.229792 TCTTCTGTTTCACATGCCCAC 58.770 47.619 0.00 0.00 0.00 4.61
1101 1544 4.838152 GAGAGGATGCGCGCCCAA 62.838 66.667 30.77 11.06 0.00 4.12
1368 1811 4.493747 GAGGAAGGGTCGCCGTCG 62.494 72.222 0.00 0.00 0.00 5.12
1369 1812 4.493747 CGAGGAAGGGTCGCCGTC 62.494 72.222 0.00 0.00 0.00 4.79
1563 2012 4.854924 TGATGCCGTCCCATGCCG 62.855 66.667 0.00 0.00 0.00 5.69
1568 2017 0.400213 AACTTCTTGATGCCGTCCCA 59.600 50.000 0.00 0.00 0.00 4.37
1574 2023 1.153958 GGCGCAACTTCTTGATGCC 60.154 57.895 10.83 2.59 40.75 4.40
1650 2124 2.093973 GCAGGCTAGACTACAGAGCAAA 60.094 50.000 0.00 0.00 37.98 3.68
1664 2138 1.630369 AGATCCACACAAAGCAGGCTA 59.370 47.619 0.00 0.00 0.00 3.93
1665 2139 0.403271 AGATCCACACAAAGCAGGCT 59.597 50.000 0.00 0.00 0.00 4.58
1666 2140 1.251251 AAGATCCACACAAAGCAGGC 58.749 50.000 0.00 0.00 0.00 4.85
1667 2141 3.057736 CAGAAAGATCCACACAAAGCAGG 60.058 47.826 0.00 0.00 0.00 4.85
1827 2310 6.804783 CCATACTATCGTACGCATCACAATTA 59.195 38.462 11.24 0.00 0.00 1.40
1842 2325 5.240891 TCGTTACTACTCCCCATACTATCG 58.759 45.833 0.00 0.00 0.00 2.92
2046 3928 0.323451 CCTAGGTTTGGAGTTGGGCC 60.323 60.000 0.00 0.00 0.00 5.80
2312 4198 3.181443 TGGAGAGGGAAACAAGTTCTTCC 60.181 47.826 5.10 5.10 40.44 3.46
2344 4235 2.027192 GGTGGTCATGGCAAGTCTTCTA 60.027 50.000 0.00 0.00 0.00 2.10
2388 4280 4.135306 TGGTCCGTAATAACAAAGCAACA 58.865 39.130 0.00 0.00 0.00 3.33
2428 4331 6.836007 TCAAGCTCTCAAGTTCCTGATATCTA 59.164 38.462 3.98 0.00 0.00 1.98
2467 4370 2.915349 AGATGCATGGCTGAGTGTAAG 58.085 47.619 2.46 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.