Multiple sequence alignment - TraesCS6D01G138700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G138700 chr6D 100.000 3900 0 0 1 3900 107795236 107799135 0.000000e+00 7203
1 TraesCS6D01G138700 chr6D 88.057 494 48 4 1583 2072 437548889 437548403 3.380000e-160 575
2 TraesCS6D01G138700 chr6D 78.719 484 72 20 1115 1585 450972853 450973318 1.060000e-75 294
3 TraesCS6D01G138700 chr6A 91.088 3198 146 52 249 3383 131442582 131445703 0.000000e+00 4198
4 TraesCS6D01G138700 chr6A 85.135 222 10 9 3420 3637 131445784 131445986 5.110000e-49 206
5 TraesCS6D01G138700 chr6A 93.548 124 7 1 3778 3900 131446136 131446259 2.390000e-42 183
6 TraesCS6D01G138700 chr6A 84.524 168 15 6 2018 2185 543496080 543495924 5.220000e-34 156
7 TraesCS6D01G138700 chr6A 97.701 87 1 1 3645 3730 131446052 131446138 8.730000e-32 148
8 TraesCS6D01G138700 chr6A 88.421 95 8 2 157 248 457850372 457850466 1.150000e-20 111
9 TraesCS6D01G138700 chr6B 91.655 2948 147 36 215 3106 195125926 195128830 0.000000e+00 3989
10 TraesCS6D01G138700 chr4A 90.015 1342 99 20 1259 2595 123928282 123929593 0.000000e+00 1703
11 TraesCS6D01G138700 chr4A 88.133 691 59 12 1910 2594 344517073 344517746 0.000000e+00 800
12 TraesCS6D01G138700 chr4A 88.630 387 36 4 1259 1645 344508208 344508586 7.630000e-127 464
13 TraesCS6D01G138700 chr4A 92.946 241 16 1 1674 1913 344502714 344502954 2.230000e-92 350
14 TraesCS6D01G138700 chr4A 91.736 242 19 1 1674 1914 344508584 344508825 6.240000e-88 335
15 TraesCS6D01G138700 chr7A 91.419 874 56 12 1726 2595 39248666 39249524 0.000000e+00 1181
16 TraesCS6D01G138700 chr5D 78.750 320 55 11 1115 1430 462758941 462759251 6.610000e-48 202
17 TraesCS6D01G138700 chr5D 85.350 157 23 0 2274 2430 520296826 520296982 3.120000e-36 163
18 TraesCS6D01G138700 chr3B 86.145 166 17 6 1004 1166 778111147 778111309 1.440000e-39 174
19 TraesCS6D01G138700 chr3B 85.350 157 23 0 2274 2430 771132520 771132676 3.120000e-36 163
20 TraesCS6D01G138700 chr4D 80.995 221 28 8 2018 2236 493748995 493748787 3.120000e-36 163
21 TraesCS6D01G138700 chr5A 85.119 168 14 6 2018 2185 576078073 576077917 1.120000e-35 161
22 TraesCS6D01G138700 chr5A 83.478 115 13 5 138 247 25890712 25890599 6.890000e-18 102
23 TraesCS6D01G138700 chr1B 84.713 157 24 0 2274 2430 667237987 667237831 1.450000e-34 158
24 TraesCS6D01G138700 chr1B 94.792 96 5 0 2272 2367 225454794 225454889 2.430000e-32 150
25 TraesCS6D01G138700 chr2D 82.209 163 28 1 1004 1166 41957812 41957973 5.250000e-29 139
26 TraesCS6D01G138700 chr2D 87.619 105 9 2 147 248 260369986 260370089 6.850000e-23 119
27 TraesCS6D01G138700 chr5B 88.000 100 8 3 157 253 537533244 537533146 8.860000e-22 115
28 TraesCS6D01G138700 chr3A 86.667 105 9 4 155 256 426027597 426027495 1.150000e-20 111
29 TraesCS6D01G138700 chr3A 86.667 105 9 4 155 256 426073868 426073766 1.150000e-20 111
30 TraesCS6D01G138700 chr2B 87.129 101 9 3 155 252 257534762 257534861 1.150000e-20 111
31 TraesCS6D01G138700 chr2B 85.437 103 11 3 157 256 601206847 601206948 1.920000e-18 104
32 TraesCS6D01G138700 chr1D 88.421 95 8 1 157 248 3952654 3952560 1.150000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G138700 chr6D 107795236 107799135 3899 False 7203.00 7203 100.000 1 3900 1 chr6D.!!$F1 3899
1 TraesCS6D01G138700 chr6A 131442582 131446259 3677 False 1183.75 4198 91.868 249 3900 4 chr6A.!!$F2 3651
2 TraesCS6D01G138700 chr6B 195125926 195128830 2904 False 3989.00 3989 91.655 215 3106 1 chr6B.!!$F1 2891
3 TraesCS6D01G138700 chr4A 123928282 123929593 1311 False 1703.00 1703 90.015 1259 2595 1 chr4A.!!$F1 1336
4 TraesCS6D01G138700 chr4A 344517073 344517746 673 False 800.00 800 88.133 1910 2594 1 chr4A.!!$F3 684
5 TraesCS6D01G138700 chr4A 344508208 344508825 617 False 399.50 464 90.183 1259 1914 2 chr4A.!!$F4 655
6 TraesCS6D01G138700 chr7A 39248666 39249524 858 False 1181.00 1181 91.419 1726 2595 1 chr7A.!!$F1 869


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.030638 GGCACAAACACGCATGAGTT 59.969 50.0 0.00 0.0 0.00 3.01 F
1166 1213 0.325272 AAGGAGGAAAAGAGGGCGAC 59.675 55.0 0.00 0.0 0.00 5.19 F
2009 2091 0.247736 AATCTCCGTCAGTGACCTGC 59.752 55.0 17.57 0.0 38.66 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1603 0.606401 TCTTGAAGCCCTGAAAGCGG 60.606 55.0 0.00 0.0 34.64 5.52 R
2268 2354 0.178992 CCTTTGGAAGCCCACTGACA 60.179 55.0 0.00 0.0 43.41 3.58 R
3777 4002 0.601558 GACTGTTCGGAGTGGCTACA 59.398 55.0 2.02 0.0 0.00 2.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.868916 TGTTTTTGTAAAGAAATCAAACTCAGC 58.131 29.630 0.00 0.00 32.08 4.26
28 29 8.328146 GTTTTTGTAAAGAAATCAAACTCAGCC 58.672 33.333 0.00 0.00 32.08 4.85
29 30 6.959639 TTGTAAAGAAATCAAACTCAGCCT 57.040 33.333 0.00 0.00 0.00 4.58
30 31 6.959639 TGTAAAGAAATCAAACTCAGCCTT 57.040 33.333 0.00 0.00 0.00 4.35
31 32 6.970484 TGTAAAGAAATCAAACTCAGCCTTC 58.030 36.000 0.00 0.00 0.00 3.46
32 33 4.756084 AAGAAATCAAACTCAGCCTTCG 57.244 40.909 0.00 0.00 0.00 3.79
33 34 3.744660 AGAAATCAAACTCAGCCTTCGT 58.255 40.909 0.00 0.00 0.00 3.85
34 35 3.748568 AGAAATCAAACTCAGCCTTCGTC 59.251 43.478 0.00 0.00 0.00 4.20
35 36 2.100605 ATCAAACTCAGCCTTCGTCC 57.899 50.000 0.00 0.00 0.00 4.79
36 37 0.034896 TCAAACTCAGCCTTCGTCCC 59.965 55.000 0.00 0.00 0.00 4.46
37 38 0.250295 CAAACTCAGCCTTCGTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
38 39 0.472471 AAACTCAGCCTTCGTCCCAA 59.528 50.000 0.00 0.00 0.00 4.12
39 40 0.035458 AACTCAGCCTTCGTCCCAAG 59.965 55.000 0.00 0.00 0.00 3.61
40 41 1.122019 ACTCAGCCTTCGTCCCAAGT 61.122 55.000 0.00 0.00 0.00 3.16
41 42 0.895530 CTCAGCCTTCGTCCCAAGTA 59.104 55.000 0.00 0.00 0.00 2.24
42 43 1.482593 CTCAGCCTTCGTCCCAAGTAT 59.517 52.381 0.00 0.00 0.00 2.12
43 44 2.693591 CTCAGCCTTCGTCCCAAGTATA 59.306 50.000 0.00 0.00 0.00 1.47
44 45 3.305720 TCAGCCTTCGTCCCAAGTATAT 58.694 45.455 0.00 0.00 0.00 0.86
45 46 3.069586 TCAGCCTTCGTCCCAAGTATATG 59.930 47.826 0.00 0.00 0.00 1.78
46 47 3.039011 AGCCTTCGTCCCAAGTATATGT 58.961 45.455 0.00 0.00 0.00 2.29
47 48 3.069729 AGCCTTCGTCCCAAGTATATGTC 59.930 47.826 0.00 0.00 0.00 3.06
48 49 3.069729 GCCTTCGTCCCAAGTATATGTCT 59.930 47.826 0.00 0.00 0.00 3.41
49 50 4.796618 GCCTTCGTCCCAAGTATATGTCTC 60.797 50.000 0.00 0.00 0.00 3.36
50 51 4.262079 CCTTCGTCCCAAGTATATGTCTCC 60.262 50.000 0.00 0.00 0.00 3.71
51 52 4.180377 TCGTCCCAAGTATATGTCTCCT 57.820 45.455 0.00 0.00 0.00 3.69
52 53 4.142790 TCGTCCCAAGTATATGTCTCCTC 58.857 47.826 0.00 0.00 0.00 3.71
53 54 3.256136 CGTCCCAAGTATATGTCTCCTCC 59.744 52.174 0.00 0.00 0.00 4.30
54 55 4.484912 GTCCCAAGTATATGTCTCCTCCT 58.515 47.826 0.00 0.00 0.00 3.69
55 56 4.282195 GTCCCAAGTATATGTCTCCTCCTG 59.718 50.000 0.00 0.00 0.00 3.86
56 57 4.078571 TCCCAAGTATATGTCTCCTCCTGT 60.079 45.833 0.00 0.00 0.00 4.00
57 58 5.135533 TCCCAAGTATATGTCTCCTCCTGTA 59.864 44.000 0.00 0.00 0.00 2.74
58 59 5.839063 CCCAAGTATATGTCTCCTCCTGTAA 59.161 44.000 0.00 0.00 0.00 2.41
59 60 6.326583 CCCAAGTATATGTCTCCTCCTGTAAA 59.673 42.308 0.00 0.00 0.00 2.01
60 61 7.210873 CCAAGTATATGTCTCCTCCTGTAAAC 58.789 42.308 0.00 0.00 0.00 2.01
61 62 6.636562 AGTATATGTCTCCTCCTGTAAACG 57.363 41.667 0.00 0.00 0.00 3.60
62 63 6.127793 AGTATATGTCTCCTCCTGTAAACGT 58.872 40.000 0.00 0.00 0.00 3.99
63 64 7.285566 AGTATATGTCTCCTCCTGTAAACGTA 58.714 38.462 0.00 0.00 0.00 3.57
64 65 4.985538 ATGTCTCCTCCTGTAAACGTAG 57.014 45.455 0.00 0.00 0.00 3.51
65 66 3.087031 TGTCTCCTCCTGTAAACGTAGG 58.913 50.000 0.00 0.00 35.34 3.18
66 67 3.245016 TGTCTCCTCCTGTAAACGTAGGA 60.245 47.826 4.75 4.75 40.68 2.94
67 68 3.128415 GTCTCCTCCTGTAAACGTAGGAC 59.872 52.174 0.45 0.00 38.15 3.85
68 69 3.087031 CTCCTCCTGTAAACGTAGGACA 58.913 50.000 0.45 0.00 38.15 4.02
69 70 2.821969 TCCTCCTGTAAACGTAGGACAC 59.178 50.000 0.45 0.00 38.15 3.67
70 71 2.094338 CCTCCTGTAAACGTAGGACACC 60.094 54.545 0.45 0.00 38.15 4.16
71 72 1.541147 TCCTGTAAACGTAGGACACCG 59.459 52.381 0.45 0.00 38.15 4.94
72 73 1.403249 CCTGTAAACGTAGGACACCGG 60.403 57.143 0.00 0.00 36.11 5.28
73 74 1.270550 CTGTAAACGTAGGACACCGGT 59.729 52.381 0.00 0.00 0.00 5.28
74 75 1.686052 TGTAAACGTAGGACACCGGTT 59.314 47.619 2.97 0.00 37.76 4.44
75 76 2.061028 GTAAACGTAGGACACCGGTTG 58.939 52.381 2.97 2.94 34.41 3.77
76 77 0.465287 AAACGTAGGACACCGGTTGT 59.535 50.000 2.97 6.91 43.10 3.32
88 89 4.572571 GGTTGTCACCGGCCACCA 62.573 66.667 0.00 0.00 31.60 4.17
89 90 3.284449 GTTGTCACCGGCCACCAC 61.284 66.667 0.00 0.00 0.00 4.16
90 91 3.484806 TTGTCACCGGCCACCACT 61.485 61.111 0.00 0.00 0.00 4.00
91 92 3.765894 TTGTCACCGGCCACCACTG 62.766 63.158 0.00 0.00 0.00 3.66
92 93 3.936203 GTCACCGGCCACCACTGA 61.936 66.667 0.00 0.00 0.00 3.41
93 94 3.625897 TCACCGGCCACCACTGAG 61.626 66.667 0.00 0.00 0.00 3.35
94 95 4.704833 CACCGGCCACCACTGAGG 62.705 72.222 0.00 0.00 45.67 3.86
100 101 4.577152 CCACCACTGAGGCACAAA 57.423 55.556 0.00 0.00 43.14 2.83
101 102 2.032981 CCACCACTGAGGCACAAAC 58.967 57.895 0.00 0.00 43.14 2.93
102 103 0.751277 CCACCACTGAGGCACAAACA 60.751 55.000 0.00 0.00 43.14 2.83
103 104 0.381801 CACCACTGAGGCACAAACAC 59.618 55.000 0.00 0.00 43.14 3.32
104 105 1.095228 ACCACTGAGGCACAAACACG 61.095 55.000 0.00 0.00 43.14 4.49
105 106 1.009675 CACTGAGGCACAAACACGC 60.010 57.895 0.00 0.00 0.00 5.34
106 107 1.451207 ACTGAGGCACAAACACGCA 60.451 52.632 0.00 0.00 0.00 5.24
107 108 0.819259 ACTGAGGCACAAACACGCAT 60.819 50.000 0.00 0.00 0.00 4.73
108 109 0.386352 CTGAGGCACAAACACGCATG 60.386 55.000 0.00 0.00 0.00 4.06
109 110 0.817229 TGAGGCACAAACACGCATGA 60.817 50.000 0.00 0.00 0.00 3.07
110 111 0.110056 GAGGCACAAACACGCATGAG 60.110 55.000 0.00 0.00 0.00 2.90
111 112 0.819259 AGGCACAAACACGCATGAGT 60.819 50.000 0.00 0.00 0.00 3.41
112 113 0.030638 GGCACAAACACGCATGAGTT 59.969 50.000 0.00 0.00 0.00 3.01
113 114 1.122849 GCACAAACACGCATGAGTTG 58.877 50.000 0.00 0.00 33.38 3.16
114 115 1.757574 CACAAACACGCATGAGTTGG 58.242 50.000 0.00 0.00 32.22 3.77
115 116 0.667993 ACAAACACGCATGAGTTGGG 59.332 50.000 0.00 0.00 43.63 4.12
116 117 0.664166 CAAACACGCATGAGTTGGGC 60.664 55.000 0.00 0.00 41.83 5.36
117 118 1.106351 AAACACGCATGAGTTGGGCA 61.106 50.000 0.00 0.00 41.83 5.36
118 119 0.895100 AACACGCATGAGTTGGGCAT 60.895 50.000 0.00 0.00 41.83 4.40
119 120 1.138036 CACGCATGAGTTGGGCATG 59.862 57.895 0.00 0.00 44.52 4.06
120 121 2.048023 ACGCATGAGTTGGGCATGG 61.048 57.895 0.00 0.00 42.53 3.66
121 122 2.048023 CGCATGAGTTGGGCATGGT 61.048 57.895 0.00 0.00 42.53 3.55
122 123 0.747644 CGCATGAGTTGGGCATGGTA 60.748 55.000 0.00 0.00 42.53 3.25
123 124 1.473258 GCATGAGTTGGGCATGGTAA 58.527 50.000 0.00 0.00 42.53 2.85
124 125 2.034124 GCATGAGTTGGGCATGGTAAT 58.966 47.619 0.00 0.00 42.53 1.89
125 126 3.221771 GCATGAGTTGGGCATGGTAATA 58.778 45.455 0.00 0.00 42.53 0.98
126 127 3.828451 GCATGAGTTGGGCATGGTAATAT 59.172 43.478 0.00 0.00 42.53 1.28
127 128 4.281688 GCATGAGTTGGGCATGGTAATATT 59.718 41.667 0.00 0.00 42.53 1.28
128 129 5.775686 CATGAGTTGGGCATGGTAATATTG 58.224 41.667 0.00 0.00 39.48 1.90
129 130 5.122707 TGAGTTGGGCATGGTAATATTGA 57.877 39.130 0.00 0.00 0.00 2.57
130 131 5.514169 TGAGTTGGGCATGGTAATATTGAA 58.486 37.500 0.00 0.00 0.00 2.69
131 132 5.593909 TGAGTTGGGCATGGTAATATTGAAG 59.406 40.000 0.00 0.00 0.00 3.02
132 133 5.518865 AGTTGGGCATGGTAATATTGAAGT 58.481 37.500 0.00 0.00 0.00 3.01
133 134 5.957774 AGTTGGGCATGGTAATATTGAAGTT 59.042 36.000 0.00 0.00 0.00 2.66
134 135 6.096846 AGTTGGGCATGGTAATATTGAAGTTC 59.903 38.462 0.00 0.00 0.00 3.01
135 136 4.578516 TGGGCATGGTAATATTGAAGTTCG 59.421 41.667 0.00 0.00 0.00 3.95
136 137 4.819630 GGGCATGGTAATATTGAAGTTCGA 59.180 41.667 0.00 0.00 0.00 3.71
137 138 5.298276 GGGCATGGTAATATTGAAGTTCGAA 59.702 40.000 0.00 0.00 0.00 3.71
138 139 6.199393 GGCATGGTAATATTGAAGTTCGAAC 58.801 40.000 20.71 20.71 0.00 3.95
139 140 6.183360 GGCATGGTAATATTGAAGTTCGAACA 60.183 38.462 28.78 9.75 0.00 3.18
140 141 7.247728 GCATGGTAATATTGAAGTTCGAACAA 58.752 34.615 28.78 15.63 0.00 2.83
141 142 7.753132 GCATGGTAATATTGAAGTTCGAACAAA 59.247 33.333 28.78 19.47 0.00 2.83
142 143 9.061610 CATGGTAATATTGAAGTTCGAACAAAC 57.938 33.333 28.78 18.71 0.00 2.93
143 144 7.292292 TGGTAATATTGAAGTTCGAACAAACG 58.708 34.615 28.78 0.00 34.27 3.60
144 145 7.171167 TGGTAATATTGAAGTTCGAACAAACGA 59.829 33.333 28.78 18.27 40.55 3.85
164 165 6.821031 ACGAAAGTACACATCTACTCTCTT 57.179 37.500 0.00 0.00 46.88 2.85
165 166 6.844254 ACGAAAGTACACATCTACTCTCTTC 58.156 40.000 0.00 0.00 46.88 2.87
166 167 5.960683 CGAAAGTACACATCTACTCTCTTCG 59.039 44.000 0.00 0.00 32.44 3.79
167 168 6.402334 CGAAAGTACACATCTACTCTCTTCGT 60.402 42.308 0.00 0.00 33.62 3.85
168 169 6.425577 AAGTACACATCTACTCTCTTCGTC 57.574 41.667 0.00 0.00 0.00 4.20
169 170 5.736813 AGTACACATCTACTCTCTTCGTCT 58.263 41.667 0.00 0.00 0.00 4.18
170 171 5.813672 AGTACACATCTACTCTCTTCGTCTC 59.186 44.000 0.00 0.00 0.00 3.36
171 172 4.580868 ACACATCTACTCTCTTCGTCTCA 58.419 43.478 0.00 0.00 0.00 3.27
172 173 5.004448 ACACATCTACTCTCTTCGTCTCAA 58.996 41.667 0.00 0.00 0.00 3.02
173 174 5.473846 ACACATCTACTCTCTTCGTCTCAAA 59.526 40.000 0.00 0.00 0.00 2.69
174 175 6.027131 CACATCTACTCTCTTCGTCTCAAAG 58.973 44.000 0.00 0.00 0.00 2.77
175 176 5.708230 ACATCTACTCTCTTCGTCTCAAAGT 59.292 40.000 0.00 0.00 0.00 2.66
176 177 6.879993 ACATCTACTCTCTTCGTCTCAAAGTA 59.120 38.462 0.00 0.00 0.00 2.24
177 178 7.390996 ACATCTACTCTCTTCGTCTCAAAGTAA 59.609 37.037 0.00 0.00 0.00 2.24
178 179 7.367159 TCTACTCTCTTCGTCTCAAAGTAAG 57.633 40.000 0.00 0.00 0.00 2.34
179 180 6.935771 TCTACTCTCTTCGTCTCAAAGTAAGT 59.064 38.462 0.00 0.00 0.00 2.24
180 181 6.394025 ACTCTCTTCGTCTCAAAGTAAGTT 57.606 37.500 0.00 0.00 0.00 2.66
181 182 6.807789 ACTCTCTTCGTCTCAAAGTAAGTTT 58.192 36.000 0.00 0.00 0.00 2.66
182 183 6.919115 ACTCTCTTCGTCTCAAAGTAAGTTTC 59.081 38.462 0.00 0.00 0.00 2.78
183 184 7.040473 TCTCTTCGTCTCAAAGTAAGTTTCT 57.960 36.000 0.00 0.00 0.00 2.52
184 185 7.140048 TCTCTTCGTCTCAAAGTAAGTTTCTC 58.860 38.462 0.00 0.00 0.00 2.87
185 186 6.802608 TCTTCGTCTCAAAGTAAGTTTCTCA 58.197 36.000 0.00 0.00 0.00 3.27
186 187 7.262772 TCTTCGTCTCAAAGTAAGTTTCTCAA 58.737 34.615 0.00 0.00 0.00 3.02
187 188 7.435488 TCTTCGTCTCAAAGTAAGTTTCTCAAG 59.565 37.037 0.00 0.00 0.00 3.02
188 189 6.570692 TCGTCTCAAAGTAAGTTTCTCAAGT 58.429 36.000 0.00 0.00 0.00 3.16
189 190 7.039882 TCGTCTCAAAGTAAGTTTCTCAAGTT 58.960 34.615 0.00 0.00 0.00 2.66
190 191 7.548075 TCGTCTCAAAGTAAGTTTCTCAAGTTT 59.452 33.333 0.00 0.00 0.00 2.66
191 192 7.636359 CGTCTCAAAGTAAGTTTCTCAAGTTTG 59.364 37.037 0.00 0.00 34.86 2.93
192 193 8.451748 GTCTCAAAGTAAGTTTCTCAAGTTTGT 58.548 33.333 0.00 0.00 35.03 2.83
193 194 9.661563 TCTCAAAGTAAGTTTCTCAAGTTTGTA 57.338 29.630 0.00 0.00 35.03 2.41
194 195 9.704098 CTCAAAGTAAGTTTCTCAAGTTTGTAC 57.296 33.333 0.00 0.00 35.03 2.90
195 196 9.444600 TCAAAGTAAGTTTCTCAAGTTTGTACT 57.555 29.630 0.00 0.00 35.03 2.73
237 238 8.316640 ACTAAGCTTGAGACACTTATTTTGAG 57.683 34.615 9.86 0.00 0.00 3.02
239 240 7.992754 AAGCTTGAGACACTTATTTTGAGAT 57.007 32.000 0.00 0.00 0.00 2.75
247 248 5.749462 ACACTTATTTTGAGATGGAGGGAG 58.251 41.667 0.00 0.00 0.00 4.30
271 273 3.971245 TGTTTGAACTTTGGCCTTTGT 57.029 38.095 3.32 0.00 0.00 2.83
304 306 8.683550 AAAAGTTTCAAACAAGTTGCTAGTAC 57.316 30.769 2.41 0.00 37.13 2.73
305 307 7.625828 AAGTTTCAAACAAGTTGCTAGTACT 57.374 32.000 2.41 0.00 37.13 2.73
306 308 8.726870 AAGTTTCAAACAAGTTGCTAGTACTA 57.273 30.769 2.41 1.89 37.13 1.82
315 317 8.804912 ACAAGTTGCTAGTACTAGTACTACAT 57.195 34.615 30.50 18.12 43.98 2.29
495 504 1.129209 GAAGCGTCAACGTTACGGC 59.871 57.895 22.50 16.29 40.64 5.68
518 527 1.405256 CGCTTGCTCTTCATCTGTCCT 60.405 52.381 0.00 0.00 0.00 3.85
562 574 5.390461 CGACGCTTCATTTATTTCCACTGAA 60.390 40.000 0.00 0.00 0.00 3.02
564 576 5.240623 ACGCTTCATTTATTTCCACTGAACA 59.759 36.000 0.00 0.00 0.00 3.18
573 585 2.910688 TCCACTGAACACTTCCTGTC 57.089 50.000 0.00 0.00 30.29 3.51
579 591 1.694150 TGAACACTTCCTGTCTCCTGG 59.306 52.381 0.00 0.00 30.29 4.45
646 662 2.625314 GCAGCTCATTTAAATCCCCCTC 59.375 50.000 0.00 0.00 0.00 4.30
699 715 0.541392 AACGCCATAGTCCATGCTCA 59.459 50.000 0.00 0.00 32.84 4.26
755 782 2.316108 GGGGAAGTCCAAGAGCAAAAA 58.684 47.619 0.00 0.00 37.91 1.94
888 929 0.823356 CTCCAAACCACCACCCACAG 60.823 60.000 0.00 0.00 0.00 3.66
945 986 2.763248 CACTAACACGCACGCGAG 59.237 61.111 19.66 13.19 42.83 5.03
978 1019 4.585216 AACCCCCGTCCACCTCCA 62.585 66.667 0.00 0.00 0.00 3.86
1166 1213 0.325272 AAGGAGGAAAAGAGGGCGAC 59.675 55.000 0.00 0.00 0.00 5.19
1167 1214 1.448013 GGAGGAAAAGAGGGCGACG 60.448 63.158 0.00 0.00 0.00 5.12
1168 1215 1.448013 GAGGAAAAGAGGGCGACGG 60.448 63.158 0.00 0.00 0.00 4.79
1458 1535 2.286523 CGTCAGGGAGAAGGCCACT 61.287 63.158 5.01 3.29 0.00 4.00
1461 1538 2.208349 AGGGAGAAGGCCACTGGT 59.792 61.111 5.01 0.00 0.00 4.00
1512 1589 0.463833 CCAACGTGAGCTAATCCCCC 60.464 60.000 0.00 0.00 0.00 5.40
1526 1603 2.764547 CCCCCGTCCTTCCTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
1534 1611 0.544357 TCCTTCCTCCTCCGCTTTCA 60.544 55.000 0.00 0.00 0.00 2.69
1544 1621 0.606401 TCCGCTTTCAGGGCTTCAAG 60.606 55.000 0.00 0.00 0.00 3.02
1545 1622 0.606401 CCGCTTTCAGGGCTTCAAGA 60.606 55.000 0.00 0.00 0.00 3.02
1567 1644 3.439857 TTCAAAATCCAGGGGAGAGTG 57.560 47.619 0.00 0.00 34.05 3.51
1578 1655 1.134371 GGGGAGAGTGGTGTGATTAGC 60.134 57.143 0.00 0.00 0.00 3.09
1607 1688 5.118990 AGATTGGTGTCATAAGGATTCGTG 58.881 41.667 0.00 0.00 0.00 4.35
1608 1689 2.627945 TGGTGTCATAAGGATTCGTGC 58.372 47.619 0.00 0.00 0.00 5.34
1609 1690 1.593006 GGTGTCATAAGGATTCGTGCG 59.407 52.381 0.00 0.00 0.00 5.34
1610 1691 2.268298 GTGTCATAAGGATTCGTGCGT 58.732 47.619 0.00 0.00 0.00 5.24
1843 1924 2.000447 CGTTCCCCTTCGTGATTCTTC 59.000 52.381 0.00 0.00 0.00 2.87
1882 1964 3.361786 TCGAGACTGATTACCATGGTGA 58.638 45.455 28.17 20.56 0.00 4.02
2009 2091 0.247736 AATCTCCGTCAGTGACCTGC 59.752 55.000 17.57 0.00 38.66 4.85
2306 2394 1.561542 GGATTGGCAGGAGAAGAGGAA 59.438 52.381 0.00 0.00 0.00 3.36
2316 2404 2.564947 GGAGAAGAGGAACAGAGCTGAA 59.435 50.000 4.21 0.00 0.00 3.02
2429 2517 5.303078 TGGGAGTTAAGCTGAGAGATGTATC 59.697 44.000 0.00 0.00 0.00 2.24
2430 2518 5.279256 GGGAGTTAAGCTGAGAGATGTATCC 60.279 48.000 0.00 0.00 0.00 2.59
2431 2519 5.538433 GGAGTTAAGCTGAGAGATGTATCCT 59.462 44.000 0.00 0.00 0.00 3.24
2432 2520 6.294508 GGAGTTAAGCTGAGAGATGTATCCTC 60.295 46.154 0.00 0.00 0.00 3.71
2436 2525 3.321682 AGCTGAGAGATGTATCCTCTTGC 59.678 47.826 0.00 0.00 40.78 4.01
2453 2542 5.582665 CCTCTTGCTCATCAGTACCTAAAAC 59.417 44.000 0.00 0.00 0.00 2.43
2565 2658 4.274459 GTGCAGACATCAGTGAAGAACTTT 59.726 41.667 1.66 0.00 36.83 2.66
2597 2690 4.380843 TGGAGGTAAAATTTCTGCTCCA 57.619 40.909 0.00 0.00 37.40 3.86
2604 2697 4.942761 AAAATTTCTGCTCCAGCTTTCA 57.057 36.364 0.00 0.00 42.66 2.69
2664 2769 1.134521 ACAACTTGTGCTCGACAGGAA 60.135 47.619 0.00 0.00 35.23 3.36
2691 2796 1.023513 GGCAGACGATCTTGCAGCTT 61.024 55.000 13.42 0.00 0.00 3.74
2735 2840 8.840321 CAAGTACATAATGGATTTCAGGTAAGG 58.160 37.037 0.00 0.00 0.00 2.69
2746 2851 4.422073 TTCAGGTAAGGCATCGATCATT 57.578 40.909 0.00 0.00 0.00 2.57
2747 2852 4.422073 TCAGGTAAGGCATCGATCATTT 57.578 40.909 0.00 0.00 0.00 2.32
2839 2951 1.204146 GCAGATACCCCTTGACTGGA 58.796 55.000 0.00 0.00 0.00 3.86
2884 2996 0.108615 CGTCGATGGACTCCAAGCTT 60.109 55.000 0.66 0.00 41.16 3.74
2925 3039 1.432514 TGCAGATGCGACAGAGTTTC 58.567 50.000 0.00 0.00 45.83 2.78
2936 3050 1.076332 CAGAGTTTCGTTTAGCCCGG 58.924 55.000 0.00 0.00 0.00 5.73
3072 3186 1.629043 TGTTCGTCTGCTTACCCTCT 58.371 50.000 0.00 0.00 0.00 3.69
3137 3251 1.079336 GTGGTACTCCCTGCGTTCC 60.079 63.158 0.00 0.00 0.00 3.62
3144 3258 3.149005 ACTCCCTGCGTTCCAAAATAA 57.851 42.857 0.00 0.00 0.00 1.40
3145 3259 3.492337 ACTCCCTGCGTTCCAAAATAAA 58.508 40.909 0.00 0.00 0.00 1.40
3146 3260 3.892588 ACTCCCTGCGTTCCAAAATAAAA 59.107 39.130 0.00 0.00 0.00 1.52
3184 3298 4.771590 TTTTGATGAACTGATGGACTGC 57.228 40.909 0.00 0.00 0.00 4.40
3222 3336 3.790437 CCCGAGCTGGTCATGCCT 61.790 66.667 7.70 0.00 38.35 4.75
3228 3342 2.998279 GCTGGTCATGCCTGGCAAC 61.998 63.158 27.24 19.76 43.62 4.17
3231 3345 2.562912 GTCATGCCTGGCAACGTG 59.437 61.111 27.24 19.45 43.62 4.49
3234 3348 3.367743 ATGCCTGGCAACGTGCTG 61.368 61.111 27.24 0.00 43.62 4.41
3267 3381 3.206150 CAGTTACTGTCACTGCCAAAGT 58.794 45.455 9.00 0.00 40.93 2.66
3279 3393 0.244721 GCCAAAGTGCCAAGGATGAC 59.755 55.000 0.00 0.00 0.00 3.06
3285 3399 0.532573 GTGCCAAGGATGACGAGAGA 59.467 55.000 0.00 0.00 0.00 3.10
3294 3408 4.863925 GACGAGAGAGGCGCCAGC 62.864 72.222 31.54 20.49 44.18 4.85
3307 3421 0.465705 CGCCAGCCAGGAGAGATTTA 59.534 55.000 0.00 0.00 40.01 1.40
3324 3438 0.324091 TTAGAGGGGAGTGGTCGGAC 60.324 60.000 0.00 0.00 0.00 4.79
3389 3503 1.645034 GCTAAGCAGCGAGAATGACA 58.355 50.000 1.72 0.00 38.22 3.58
3390 3504 2.002586 GCTAAGCAGCGAGAATGACAA 58.997 47.619 1.72 0.00 38.22 3.18
3396 3510 2.417379 GCAGCGAGAATGACAAGTAGGA 60.417 50.000 0.00 0.00 0.00 2.94
3397 3511 3.443037 CAGCGAGAATGACAAGTAGGAG 58.557 50.000 0.00 0.00 0.00 3.69
3399 3513 4.096532 CAGCGAGAATGACAAGTAGGAGTA 59.903 45.833 0.00 0.00 0.00 2.59
3401 3515 4.979197 GCGAGAATGACAAGTAGGAGTATG 59.021 45.833 0.00 0.00 0.00 2.39
3404 3518 6.693545 CGAGAATGACAAGTAGGAGTATGTTC 59.306 42.308 0.00 0.00 0.00 3.18
3409 3523 3.700038 ACAAGTAGGAGTATGTTCCTCGG 59.300 47.826 3.34 0.00 44.33 4.63
3411 3525 2.091775 AGTAGGAGTATGTTCCTCGGCT 60.092 50.000 3.34 0.07 44.33 5.52
3423 3586 1.151668 CCTCGGCTGTTCTTTCACTG 58.848 55.000 0.00 0.00 0.00 3.66
3455 3618 1.075601 AGGGCATTCAAGGAGAACCA 58.924 50.000 0.00 0.00 39.49 3.67
3456 3619 1.642762 AGGGCATTCAAGGAGAACCAT 59.357 47.619 0.00 0.00 39.49 3.55
3460 3623 3.350833 GCATTCAAGGAGAACCATCTGT 58.649 45.455 0.00 0.00 39.49 3.41
3533 3696 4.798387 GCAAAATTGGATGTCCGTATCAAC 59.202 41.667 0.00 0.00 39.43 3.18
3534 3697 5.621104 GCAAAATTGGATGTCCGTATCAACA 60.621 40.000 0.00 0.00 39.43 3.33
3535 3698 6.563422 CAAAATTGGATGTCCGTATCAACAT 58.437 36.000 0.00 0.00 38.78 2.71
3536 3699 5.756195 AATTGGATGTCCGTATCAACATG 57.244 39.130 0.00 0.00 36.28 3.21
3537 3700 3.192541 TGGATGTCCGTATCAACATGG 57.807 47.619 0.00 0.00 36.28 3.66
3538 3701 2.503765 TGGATGTCCGTATCAACATGGT 59.496 45.455 0.00 0.00 36.28 3.55
3539 3702 3.131396 GGATGTCCGTATCAACATGGTC 58.869 50.000 0.00 0.00 36.28 4.02
3540 3703 3.431626 GGATGTCCGTATCAACATGGTCA 60.432 47.826 0.00 0.00 36.28 4.02
3541 3704 3.904800 TGTCCGTATCAACATGGTCAT 57.095 42.857 0.00 0.00 0.00 3.06
3542 3705 3.792401 TGTCCGTATCAACATGGTCATC 58.208 45.455 0.00 0.00 0.00 2.92
3543 3706 3.450817 TGTCCGTATCAACATGGTCATCT 59.549 43.478 0.00 0.00 0.00 2.90
3544 3707 4.051922 GTCCGTATCAACATGGTCATCTC 58.948 47.826 0.00 0.00 0.00 2.75
3545 3708 3.704061 TCCGTATCAACATGGTCATCTCA 59.296 43.478 0.00 0.00 0.00 3.27
3546 3709 4.161377 TCCGTATCAACATGGTCATCTCAA 59.839 41.667 0.00 0.00 0.00 3.02
3547 3710 5.059161 CCGTATCAACATGGTCATCTCAAT 58.941 41.667 0.00 0.00 0.00 2.57
3548 3711 5.049886 CCGTATCAACATGGTCATCTCAATG 60.050 44.000 0.00 0.00 0.00 2.82
3549 3712 5.525012 CGTATCAACATGGTCATCTCAATGT 59.475 40.000 0.00 0.00 34.32 2.71
3552 3715 6.741992 TCAACATGGTCATCTCAATGTAAC 57.258 37.500 0.00 0.00 34.32 2.50
3560 3723 5.585047 GGTCATCTCAATGTAACCAGTAACC 59.415 44.000 0.00 0.00 34.32 2.85
3576 3739 2.440247 CCGGTTTGGGCCAGGATC 60.440 66.667 6.23 0.00 0.00 3.36
3609 3772 9.343539 GGATTTTCTTGTATAATCCAAGCTAGT 57.656 33.333 0.00 0.00 44.30 2.57
3614 3777 8.250143 TCTTGTATAATCCAAGCTAGTGATGA 57.750 34.615 0.00 0.00 39.30 2.92
3737 3962 4.685169 CCTAAAGGTGTTGTGCATACAG 57.315 45.455 5.01 0.00 38.23 2.74
3738 3963 4.323417 CCTAAAGGTGTTGTGCATACAGA 58.677 43.478 5.01 0.00 38.23 3.41
3739 3964 4.943705 CCTAAAGGTGTTGTGCATACAGAT 59.056 41.667 5.01 0.00 38.23 2.90
3740 3965 6.112734 CCTAAAGGTGTTGTGCATACAGATA 58.887 40.000 5.01 0.00 38.23 1.98
3741 3966 6.597672 CCTAAAGGTGTTGTGCATACAGATAA 59.402 38.462 5.01 0.00 38.23 1.75
3742 3967 7.283127 CCTAAAGGTGTTGTGCATACAGATAAT 59.717 37.037 5.01 0.00 38.23 1.28
3743 3968 6.683974 AAGGTGTTGTGCATACAGATAATC 57.316 37.500 5.01 0.00 38.23 1.75
3744 3969 5.994250 AGGTGTTGTGCATACAGATAATCT 58.006 37.500 5.01 0.00 38.23 2.40
3756 3981 4.785669 CAGATAATCTGTTCAACCGAGC 57.214 45.455 0.00 0.00 39.58 5.03
3757 3982 4.183865 CAGATAATCTGTTCAACCGAGCA 58.816 43.478 0.00 0.00 39.58 4.26
3758 3983 4.813161 CAGATAATCTGTTCAACCGAGCAT 59.187 41.667 0.00 0.00 39.58 3.79
3759 3984 5.295292 CAGATAATCTGTTCAACCGAGCATT 59.705 40.000 0.00 0.00 39.58 3.56
3760 3985 6.479990 CAGATAATCTGTTCAACCGAGCATTA 59.520 38.462 0.00 0.00 39.58 1.90
3761 3986 6.703607 AGATAATCTGTTCAACCGAGCATTAG 59.296 38.462 0.00 0.00 31.35 1.73
3762 3987 2.346803 TCTGTTCAACCGAGCATTAGC 58.653 47.619 0.00 0.00 42.56 3.09
3776 4001 4.548991 GCATTAGCTCCATCTCAACTTG 57.451 45.455 0.00 0.00 37.91 3.16
3777 4002 3.944015 GCATTAGCTCCATCTCAACTTGT 59.056 43.478 0.00 0.00 37.91 3.16
3778 4003 4.201891 GCATTAGCTCCATCTCAACTTGTG 60.202 45.833 0.00 0.00 37.91 3.33
3788 4013 2.037251 TCTCAACTTGTGTAGCCACTCC 59.963 50.000 0.00 0.00 42.34 3.85
3789 4014 1.148310 CAACTTGTGTAGCCACTCCG 58.852 55.000 0.00 0.00 42.34 4.63
3850 4075 1.494721 ACTGTCATGGTCCCACAAAGT 59.505 47.619 0.00 0.00 0.00 2.66
3881 4106 5.415701 GTCACCATCAACCAATGTGAACTAT 59.584 40.000 0.00 0.00 0.00 2.12
3884 4109 6.808212 CACCATCAACCAATGTGAACTATTTC 59.192 38.462 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.868916 GCTGAGTTTGATTTCTTTACAAAAACA 58.131 29.630 0.00 0.00 35.74 2.83
2 3 8.328146 GGCTGAGTTTGATTTCTTTACAAAAAC 58.672 33.333 0.00 0.00 35.74 2.43
3 4 8.257306 AGGCTGAGTTTGATTTCTTTACAAAAA 58.743 29.630 0.00 0.00 35.74 1.94
4 5 7.781056 AGGCTGAGTTTGATTTCTTTACAAAA 58.219 30.769 0.00 0.00 35.74 2.44
5 6 7.346751 AGGCTGAGTTTGATTTCTTTACAAA 57.653 32.000 0.00 0.00 0.00 2.83
6 7 6.959639 AGGCTGAGTTTGATTTCTTTACAA 57.040 33.333 0.00 0.00 0.00 2.41
7 8 6.293407 CGAAGGCTGAGTTTGATTTCTTTACA 60.293 38.462 0.00 0.00 0.00 2.41
8 9 6.080406 CGAAGGCTGAGTTTGATTTCTTTAC 58.920 40.000 0.00 0.00 0.00 2.01
9 10 5.763204 ACGAAGGCTGAGTTTGATTTCTTTA 59.237 36.000 0.00 0.00 0.00 1.85
10 11 4.580580 ACGAAGGCTGAGTTTGATTTCTTT 59.419 37.500 0.00 0.00 0.00 2.52
11 12 4.137543 ACGAAGGCTGAGTTTGATTTCTT 58.862 39.130 0.00 0.00 0.00 2.52
12 13 3.744660 ACGAAGGCTGAGTTTGATTTCT 58.255 40.909 0.00 0.00 0.00 2.52
13 14 3.120165 GGACGAAGGCTGAGTTTGATTTC 60.120 47.826 0.00 0.00 0.00 2.17
14 15 2.814336 GGACGAAGGCTGAGTTTGATTT 59.186 45.455 0.00 0.00 0.00 2.17
15 16 2.427506 GGACGAAGGCTGAGTTTGATT 58.572 47.619 0.00 0.00 0.00 2.57
16 17 1.339151 GGGACGAAGGCTGAGTTTGAT 60.339 52.381 0.00 0.00 0.00 2.57
17 18 0.034896 GGGACGAAGGCTGAGTTTGA 59.965 55.000 0.00 0.00 0.00 2.69
18 19 0.250295 TGGGACGAAGGCTGAGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
19 20 0.472471 TTGGGACGAAGGCTGAGTTT 59.528 50.000 0.00 0.00 0.00 2.66
20 21 0.035458 CTTGGGACGAAGGCTGAGTT 59.965 55.000 0.00 0.00 0.00 3.01
21 22 1.122019 ACTTGGGACGAAGGCTGAGT 61.122 55.000 0.00 0.00 0.00 3.41
22 23 0.895530 TACTTGGGACGAAGGCTGAG 59.104 55.000 0.00 0.00 0.00 3.35
23 24 1.568504 ATACTTGGGACGAAGGCTGA 58.431 50.000 0.00 0.00 0.00 4.26
24 25 3.181465 ACATATACTTGGGACGAAGGCTG 60.181 47.826 0.00 0.00 0.00 4.85
25 26 3.039011 ACATATACTTGGGACGAAGGCT 58.961 45.455 0.00 0.00 0.00 4.58
26 27 3.069729 AGACATATACTTGGGACGAAGGC 59.930 47.826 0.00 0.00 0.00 4.35
27 28 4.262079 GGAGACATATACTTGGGACGAAGG 60.262 50.000 0.00 0.00 0.00 3.46
28 29 4.585162 AGGAGACATATACTTGGGACGAAG 59.415 45.833 0.00 0.00 0.00 3.79
29 30 4.543689 AGGAGACATATACTTGGGACGAA 58.456 43.478 0.00 0.00 0.00 3.85
30 31 4.142790 GAGGAGACATATACTTGGGACGA 58.857 47.826 0.00 0.00 0.00 4.20
31 32 3.256136 GGAGGAGACATATACTTGGGACG 59.744 52.174 0.00 0.00 0.00 4.79
32 33 4.282195 CAGGAGGAGACATATACTTGGGAC 59.718 50.000 0.00 0.00 0.00 4.46
33 34 4.078571 ACAGGAGGAGACATATACTTGGGA 60.079 45.833 0.00 0.00 0.00 4.37
34 35 4.227197 ACAGGAGGAGACATATACTTGGG 58.773 47.826 0.00 0.00 0.00 4.12
35 36 6.978674 TTACAGGAGGAGACATATACTTGG 57.021 41.667 0.00 0.00 0.00 3.61
36 37 6.918569 CGTTTACAGGAGGAGACATATACTTG 59.081 42.308 0.00 0.00 0.00 3.16
37 38 6.606395 ACGTTTACAGGAGGAGACATATACTT 59.394 38.462 0.00 0.00 0.00 2.24
38 39 6.127793 ACGTTTACAGGAGGAGACATATACT 58.872 40.000 0.00 0.00 0.00 2.12
39 40 6.388435 ACGTTTACAGGAGGAGACATATAC 57.612 41.667 0.00 0.00 0.00 1.47
40 41 6.713903 CCTACGTTTACAGGAGGAGACATATA 59.286 42.308 0.00 0.00 33.42 0.86
41 42 5.535406 CCTACGTTTACAGGAGGAGACATAT 59.465 44.000 0.00 0.00 33.42 1.78
42 43 4.885907 CCTACGTTTACAGGAGGAGACATA 59.114 45.833 0.00 0.00 33.42 2.29
43 44 3.700038 CCTACGTTTACAGGAGGAGACAT 59.300 47.826 0.00 0.00 33.42 3.06
44 45 3.087031 CCTACGTTTACAGGAGGAGACA 58.913 50.000 0.00 0.00 33.42 3.41
45 46 3.128415 GTCCTACGTTTACAGGAGGAGAC 59.872 52.174 5.01 0.00 41.63 3.36
46 47 3.245016 TGTCCTACGTTTACAGGAGGAGA 60.245 47.826 5.01 0.00 41.63 3.71
47 48 3.087031 TGTCCTACGTTTACAGGAGGAG 58.913 50.000 5.01 0.00 41.63 3.69
48 49 2.821969 GTGTCCTACGTTTACAGGAGGA 59.178 50.000 5.01 0.82 41.63 3.71
49 50 2.094338 GGTGTCCTACGTTTACAGGAGG 60.094 54.545 5.01 0.00 41.63 4.30
50 51 2.415090 CGGTGTCCTACGTTTACAGGAG 60.415 54.545 5.01 0.00 41.63 3.69
51 52 1.541147 CGGTGTCCTACGTTTACAGGA 59.459 52.381 0.45 0.45 38.66 3.86
52 53 1.403249 CCGGTGTCCTACGTTTACAGG 60.403 57.143 0.00 0.00 0.00 4.00
53 54 1.270550 ACCGGTGTCCTACGTTTACAG 59.729 52.381 6.12 0.00 0.00 2.74
54 55 1.327303 ACCGGTGTCCTACGTTTACA 58.673 50.000 6.12 0.00 0.00 2.41
55 56 2.061028 CAACCGGTGTCCTACGTTTAC 58.939 52.381 8.52 0.00 0.00 2.01
56 57 1.686052 ACAACCGGTGTCCTACGTTTA 59.314 47.619 8.52 0.00 34.38 2.01
57 58 0.465287 ACAACCGGTGTCCTACGTTT 59.535 50.000 8.52 0.00 34.38 3.60
58 59 2.126951 ACAACCGGTGTCCTACGTT 58.873 52.632 8.52 0.00 34.38 3.99
59 60 3.860681 ACAACCGGTGTCCTACGT 58.139 55.556 8.52 0.00 34.38 3.57
71 72 4.572571 TGGTGGCCGGTGACAACC 62.573 66.667 1.90 0.00 43.76 3.77
72 73 3.284449 GTGGTGGCCGGTGACAAC 61.284 66.667 1.90 3.41 0.00 3.32
73 74 3.484806 AGTGGTGGCCGGTGACAA 61.485 61.111 1.90 0.00 0.00 3.18
74 75 4.248842 CAGTGGTGGCCGGTGACA 62.249 66.667 1.90 0.00 0.00 3.58
75 76 3.883744 CTCAGTGGTGGCCGGTGAC 62.884 68.421 1.90 0.00 0.00 3.67
76 77 3.625897 CTCAGTGGTGGCCGGTGA 61.626 66.667 1.90 0.00 0.00 4.02
77 78 4.704833 CCTCAGTGGTGGCCGGTG 62.705 72.222 1.90 0.00 0.00 4.94
83 84 0.751277 TGTTTGTGCCTCAGTGGTGG 60.751 55.000 0.00 0.00 38.35 4.61
84 85 0.381801 GTGTTTGTGCCTCAGTGGTG 59.618 55.000 0.00 0.00 38.35 4.17
85 86 1.095228 CGTGTTTGTGCCTCAGTGGT 61.095 55.000 0.00 0.00 38.35 4.16
86 87 1.648720 CGTGTTTGTGCCTCAGTGG 59.351 57.895 0.00 0.00 39.35 4.00
87 88 1.009675 GCGTGTTTGTGCCTCAGTG 60.010 57.895 0.00 0.00 0.00 3.66
88 89 0.819259 ATGCGTGTTTGTGCCTCAGT 60.819 50.000 0.00 0.00 0.00 3.41
89 90 0.386352 CATGCGTGTTTGTGCCTCAG 60.386 55.000 0.00 0.00 0.00 3.35
90 91 0.817229 TCATGCGTGTTTGTGCCTCA 60.817 50.000 5.68 0.00 0.00 3.86
91 92 0.110056 CTCATGCGTGTTTGTGCCTC 60.110 55.000 5.68 0.00 0.00 4.70
92 93 0.819259 ACTCATGCGTGTTTGTGCCT 60.819 50.000 5.68 0.00 0.00 4.75
93 94 0.030638 AACTCATGCGTGTTTGTGCC 59.969 50.000 5.68 0.00 0.00 5.01
94 95 1.122849 CAACTCATGCGTGTTTGTGC 58.877 50.000 5.68 0.00 0.00 4.57
95 96 1.600164 CCCAACTCATGCGTGTTTGTG 60.600 52.381 16.64 6.67 0.00 3.33
96 97 0.667993 CCCAACTCATGCGTGTTTGT 59.332 50.000 16.64 8.47 0.00 2.83
97 98 0.664166 GCCCAACTCATGCGTGTTTG 60.664 55.000 5.68 10.35 0.00 2.93
98 99 1.106351 TGCCCAACTCATGCGTGTTT 61.106 50.000 5.68 0.00 0.00 2.83
99 100 0.895100 ATGCCCAACTCATGCGTGTT 60.895 50.000 5.68 0.00 0.00 3.32
100 101 1.303561 ATGCCCAACTCATGCGTGT 60.304 52.632 5.68 0.00 0.00 4.49
101 102 1.138036 CATGCCCAACTCATGCGTG 59.862 57.895 0.00 0.00 35.48 5.34
102 103 2.048023 CCATGCCCAACTCATGCGT 61.048 57.895 0.00 0.00 39.83 5.24
103 104 0.747644 TACCATGCCCAACTCATGCG 60.748 55.000 0.00 0.00 39.83 4.73
104 105 1.473258 TTACCATGCCCAACTCATGC 58.527 50.000 0.00 0.00 39.83 4.06
105 106 5.535783 TCAATATTACCATGCCCAACTCATG 59.464 40.000 0.00 0.00 40.60 3.07
106 107 5.704354 TCAATATTACCATGCCCAACTCAT 58.296 37.500 0.00 0.00 0.00 2.90
107 108 5.122707 TCAATATTACCATGCCCAACTCA 57.877 39.130 0.00 0.00 0.00 3.41
108 109 5.594317 ACTTCAATATTACCATGCCCAACTC 59.406 40.000 0.00 0.00 0.00 3.01
109 110 5.518865 ACTTCAATATTACCATGCCCAACT 58.481 37.500 0.00 0.00 0.00 3.16
110 111 5.852282 ACTTCAATATTACCATGCCCAAC 57.148 39.130 0.00 0.00 0.00 3.77
111 112 5.067153 CGAACTTCAATATTACCATGCCCAA 59.933 40.000 0.00 0.00 0.00 4.12
112 113 4.578516 CGAACTTCAATATTACCATGCCCA 59.421 41.667 0.00 0.00 0.00 5.36
113 114 4.819630 TCGAACTTCAATATTACCATGCCC 59.180 41.667 0.00 0.00 0.00 5.36
114 115 6.183360 TGTTCGAACTTCAATATTACCATGCC 60.183 38.462 27.32 0.00 0.00 4.40
115 116 6.781138 TGTTCGAACTTCAATATTACCATGC 58.219 36.000 27.32 0.00 0.00 4.06
116 117 9.061610 GTTTGTTCGAACTTCAATATTACCATG 57.938 33.333 27.32 0.00 0.00 3.66
117 118 7.960738 CGTTTGTTCGAACTTCAATATTACCAT 59.039 33.333 27.32 0.00 0.00 3.55
118 119 7.171167 TCGTTTGTTCGAACTTCAATATTACCA 59.829 33.333 27.32 1.04 36.89 3.25
119 120 7.512297 TCGTTTGTTCGAACTTCAATATTACC 58.488 34.615 27.32 5.86 36.89 2.85
120 121 8.922738 TTCGTTTGTTCGAACTTCAATATTAC 57.077 30.769 27.32 9.05 43.36 1.89
121 122 9.588774 CTTTCGTTTGTTCGAACTTCAATATTA 57.411 29.630 27.32 2.47 46.89 0.98
122 123 8.126700 ACTTTCGTTTGTTCGAACTTCAATATT 58.873 29.630 27.32 4.30 46.89 1.28
123 124 7.636326 ACTTTCGTTTGTTCGAACTTCAATAT 58.364 30.769 27.32 4.78 46.89 1.28
124 125 7.007313 ACTTTCGTTTGTTCGAACTTCAATA 57.993 32.000 27.32 4.74 46.89 1.90
125 126 5.875930 ACTTTCGTTTGTTCGAACTTCAAT 58.124 33.333 27.32 3.46 46.89 2.57
126 127 5.285798 ACTTTCGTTTGTTCGAACTTCAA 57.714 34.783 27.32 15.19 46.89 2.69
127 128 4.932268 ACTTTCGTTTGTTCGAACTTCA 57.068 36.364 27.32 10.19 46.89 3.02
128 129 5.669857 GTGTACTTTCGTTTGTTCGAACTTC 59.330 40.000 27.32 16.23 46.89 3.01
129 130 5.120519 TGTGTACTTTCGTTTGTTCGAACTT 59.879 36.000 27.32 4.92 46.89 2.66
130 131 4.626604 TGTGTACTTTCGTTTGTTCGAACT 59.373 37.500 27.32 7.88 46.89 3.01
131 132 4.884707 TGTGTACTTTCGTTTGTTCGAAC 58.115 39.130 21.42 21.42 46.89 3.95
132 133 5.521010 AGATGTGTACTTTCGTTTGTTCGAA 59.479 36.000 0.00 0.00 45.87 3.71
133 134 5.045215 AGATGTGTACTTTCGTTTGTTCGA 58.955 37.500 0.00 0.00 38.08 3.71
134 135 5.324739 AGATGTGTACTTTCGTTTGTTCG 57.675 39.130 0.00 0.00 0.00 3.95
135 136 7.381678 AGAGTAGATGTGTACTTTCGTTTGTTC 59.618 37.037 0.00 0.00 33.18 3.18
136 137 7.208080 AGAGTAGATGTGTACTTTCGTTTGTT 58.792 34.615 0.00 0.00 33.18 2.83
137 138 6.746120 AGAGTAGATGTGTACTTTCGTTTGT 58.254 36.000 0.00 0.00 33.18 2.83
138 139 7.085116 AGAGAGTAGATGTGTACTTTCGTTTG 58.915 38.462 0.00 0.00 38.56 2.93
139 140 7.216973 AGAGAGTAGATGTGTACTTTCGTTT 57.783 36.000 0.00 0.00 38.56 3.60
140 141 6.821031 AGAGAGTAGATGTGTACTTTCGTT 57.179 37.500 0.00 0.00 38.56 3.85
141 142 6.402334 CGAAGAGAGTAGATGTGTACTTTCGT 60.402 42.308 11.41 5.67 38.56 3.85
142 143 5.960683 CGAAGAGAGTAGATGTGTACTTTCG 59.039 44.000 7.68 7.68 38.56 3.46
143 144 6.844254 ACGAAGAGAGTAGATGTGTACTTTC 58.156 40.000 0.00 1.13 35.38 2.62
144 145 6.655848 AGACGAAGAGAGTAGATGTGTACTTT 59.344 38.462 0.00 0.00 33.18 2.66
145 146 6.174760 AGACGAAGAGAGTAGATGTGTACTT 58.825 40.000 0.00 0.00 33.18 2.24
146 147 5.736813 AGACGAAGAGAGTAGATGTGTACT 58.263 41.667 0.00 0.00 35.88 2.73
147 148 5.581479 TGAGACGAAGAGAGTAGATGTGTAC 59.419 44.000 0.00 0.00 0.00 2.90
148 149 5.731591 TGAGACGAAGAGAGTAGATGTGTA 58.268 41.667 0.00 0.00 0.00 2.90
149 150 4.580868 TGAGACGAAGAGAGTAGATGTGT 58.419 43.478 0.00 0.00 0.00 3.72
150 151 5.553290 TTGAGACGAAGAGAGTAGATGTG 57.447 43.478 0.00 0.00 0.00 3.21
151 152 5.708230 ACTTTGAGACGAAGAGAGTAGATGT 59.292 40.000 5.85 0.00 0.00 3.06
152 153 6.189677 ACTTTGAGACGAAGAGAGTAGATG 57.810 41.667 5.85 0.00 0.00 2.90
153 154 7.608761 ACTTACTTTGAGACGAAGAGAGTAGAT 59.391 37.037 5.85 0.00 0.00 1.98
154 155 6.935771 ACTTACTTTGAGACGAAGAGAGTAGA 59.064 38.462 5.85 0.00 0.00 2.59
155 156 7.136289 ACTTACTTTGAGACGAAGAGAGTAG 57.864 40.000 5.85 0.00 0.00 2.57
156 157 7.507733 AACTTACTTTGAGACGAAGAGAGTA 57.492 36.000 5.85 0.00 0.00 2.59
157 158 6.394025 AACTTACTTTGAGACGAAGAGAGT 57.606 37.500 5.85 6.06 0.00 3.24
158 159 7.142680 AGAAACTTACTTTGAGACGAAGAGAG 58.857 38.462 5.85 5.58 0.00 3.20
159 160 7.040473 AGAAACTTACTTTGAGACGAAGAGA 57.960 36.000 5.85 0.00 0.00 3.10
160 161 6.918569 TGAGAAACTTACTTTGAGACGAAGAG 59.081 38.462 5.85 0.00 0.00 2.85
161 162 6.802608 TGAGAAACTTACTTTGAGACGAAGA 58.197 36.000 5.85 0.00 0.00 2.87
162 163 7.222999 ACTTGAGAAACTTACTTTGAGACGAAG 59.777 37.037 0.00 0.00 0.00 3.79
163 164 7.039882 ACTTGAGAAACTTACTTTGAGACGAA 58.960 34.615 0.00 0.00 0.00 3.85
164 165 6.570692 ACTTGAGAAACTTACTTTGAGACGA 58.429 36.000 0.00 0.00 0.00 4.20
165 166 6.830114 ACTTGAGAAACTTACTTTGAGACG 57.170 37.500 0.00 0.00 0.00 4.18
166 167 8.451748 ACAAACTTGAGAAACTTACTTTGAGAC 58.548 33.333 0.00 0.00 0.00 3.36
167 168 8.561738 ACAAACTTGAGAAACTTACTTTGAGA 57.438 30.769 0.00 0.00 0.00 3.27
168 169 9.704098 GTACAAACTTGAGAAACTTACTTTGAG 57.296 33.333 0.00 0.00 0.00 3.02
169 170 9.444600 AGTACAAACTTGAGAAACTTACTTTGA 57.555 29.630 0.00 0.00 29.00 2.69
210 211 9.944376 TCAAAATAAGTGTCTCAAGCTTAGTAT 57.056 29.630 0.00 0.00 0.00 2.12
211 212 9.424319 CTCAAAATAAGTGTCTCAAGCTTAGTA 57.576 33.333 0.00 0.00 0.00 1.82
212 213 8.150945 TCTCAAAATAAGTGTCTCAAGCTTAGT 58.849 33.333 0.00 0.00 0.00 2.24
213 214 8.539770 TCTCAAAATAAGTGTCTCAAGCTTAG 57.460 34.615 0.00 0.00 0.00 2.18
227 228 5.379706 ACCTCCCTCCATCTCAAAATAAG 57.620 43.478 0.00 0.00 0.00 1.73
234 235 3.421394 AACATACCTCCCTCCATCTCA 57.579 47.619 0.00 0.00 0.00 3.27
237 238 4.080299 AGTTCAAACATACCTCCCTCCATC 60.080 45.833 0.00 0.00 0.00 3.51
239 240 3.256704 AGTTCAAACATACCTCCCTCCA 58.743 45.455 0.00 0.00 0.00 3.86
247 248 4.600692 AAGGCCAAAGTTCAAACATACC 57.399 40.909 5.01 0.00 0.00 2.73
315 317 3.254657 CCCGCCTTGTTTGTTCAATCTTA 59.745 43.478 0.00 0.00 0.00 2.10
495 504 1.094073 CAGATGAAGAGCAAGCGGGG 61.094 60.000 0.00 0.00 0.00 5.73
508 517 1.670949 GAGGCGAGCAGGACAGATGA 61.671 60.000 0.00 0.00 0.00 2.92
518 527 2.123854 AGGGATACGAGGCGAGCA 60.124 61.111 0.00 0.00 37.60 4.26
562 574 0.764369 TGCCAGGAGACAGGAAGTGT 60.764 55.000 0.00 0.00 44.49 3.55
564 576 1.140312 TTTGCCAGGAGACAGGAAGT 58.860 50.000 0.00 0.00 39.95 3.01
595 607 2.991993 GCTTGCTTTTTGCTCGCGC 61.992 57.895 0.00 0.00 43.37 6.86
646 662 5.047306 GGTTTGGAGGGAGATTTAAGTTTGG 60.047 44.000 0.00 0.00 0.00 3.28
699 715 3.472652 TGAATAACACTTGGCGTGACTT 58.527 40.909 0.00 0.00 46.81 3.01
755 782 4.751767 TTGCTTTTGGACTTTGTTGGAT 57.248 36.364 0.00 0.00 0.00 3.41
888 929 1.609208 ATCTATGGACCAAATGGCGC 58.391 50.000 0.00 0.00 39.32 6.53
1104 1151 1.544825 CCAGGTTCTCCTTCTCGGCA 61.545 60.000 0.00 0.00 43.07 5.69
1512 1589 3.839432 GCGGAGGAGGAAGGACGG 61.839 72.222 0.00 0.00 0.00 4.79
1513 1590 1.889530 AAAGCGGAGGAGGAAGGACG 61.890 60.000 0.00 0.00 0.00 4.79
1519 1596 1.990060 CCCTGAAAGCGGAGGAGGA 60.990 63.158 0.00 0.00 0.00 3.71
1526 1603 0.606401 TCTTGAAGCCCTGAAAGCGG 60.606 55.000 0.00 0.00 34.64 5.52
1534 1611 4.840115 TGGATTTTGAAATCTTGAAGCCCT 59.160 37.500 14.20 0.00 43.33 5.19
1544 1621 4.400567 CACTCTCCCCTGGATTTTGAAATC 59.599 45.833 7.73 7.73 43.12 2.17
1545 1622 4.347607 CACTCTCCCCTGGATTTTGAAAT 58.652 43.478 0.00 0.00 0.00 2.17
1567 1644 2.680312 TCTCAGCAGCTAATCACACC 57.320 50.000 0.00 0.00 0.00 4.16
1578 1655 3.875727 CCTTATGACACCAATCTCAGCAG 59.124 47.826 0.00 0.00 0.00 4.24
1607 1688 3.575351 AACAGAGAGACGGGCACGC 62.575 63.158 9.12 0.14 46.04 5.34
1609 1690 0.946221 CACAACAGAGAGACGGGCAC 60.946 60.000 0.00 0.00 0.00 5.01
1610 1691 1.367471 CACAACAGAGAGACGGGCA 59.633 57.895 0.00 0.00 0.00 5.36
1811 1892 0.611714 GGGGAACGTCATGTACCTGT 59.388 55.000 0.00 0.00 0.00 4.00
1843 1924 1.863267 GAATCCAGGAGAGCGACATG 58.137 55.000 0.00 0.00 0.00 3.21
1951 2033 2.187946 CCGAGAAGCCGCTTGGAT 59.812 61.111 11.20 0.00 41.25 3.41
2268 2354 0.178992 CCTTTGGAAGCCCACTGACA 60.179 55.000 0.00 0.00 43.41 3.58
2316 2404 2.636893 AGGTGATCTTGAGCAGAGTTGT 59.363 45.455 0.00 0.00 33.87 3.32
2429 2517 5.344743 TTTAGGTACTGATGAGCAAGAGG 57.655 43.478 0.00 0.00 41.52 3.69
2430 2518 5.289675 CGTTTTAGGTACTGATGAGCAAGAG 59.710 44.000 0.00 0.00 41.52 2.85
2431 2519 5.168569 CGTTTTAGGTACTGATGAGCAAGA 58.831 41.667 0.00 0.00 41.52 3.02
2432 2520 4.201724 GCGTTTTAGGTACTGATGAGCAAG 60.202 45.833 0.00 0.00 41.52 4.01
2436 2525 4.327357 CACTGCGTTTTAGGTACTGATGAG 59.673 45.833 0.00 0.00 41.52 2.90
2453 2542 1.583404 GCAGAAAACAAACACACTGCG 59.417 47.619 0.00 0.00 40.51 5.18
2565 2658 7.944554 AGAAATTTTACCTCCAAAGTCATCTGA 59.055 33.333 0.00 0.00 0.00 3.27
2597 2690 4.228210 TCTGATCTAACCCCATTGAAAGCT 59.772 41.667 0.00 0.00 0.00 3.74
2604 2697 3.135530 GCTCAGTCTGATCTAACCCCATT 59.864 47.826 2.22 0.00 0.00 3.16
2664 2769 1.207791 AGATCGTCTGCCTCCCATTT 58.792 50.000 0.00 0.00 0.00 2.32
2691 2796 1.305549 GGACTTCCCGACCCTACCA 60.306 63.158 0.00 0.00 0.00 3.25
2735 2840 1.952296 AGCAAGGGAAATGATCGATGC 59.048 47.619 0.54 0.00 33.97 3.91
2746 2851 1.554617 TGTCGATGATCAGCAAGGGAA 59.445 47.619 12.15 0.00 0.00 3.97
2747 2852 1.194218 TGTCGATGATCAGCAAGGGA 58.806 50.000 12.15 0.00 0.00 4.20
2806 2918 5.649831 GGGGTATCTGCAAATGAGATATTCC 59.350 44.000 0.00 0.00 35.40 3.01
2925 3039 1.161843 AACAACATCCGGGCTAAACG 58.838 50.000 0.00 0.00 0.00 3.60
2936 3050 2.284952 GGTGCAGCACAAAAACAACATC 59.715 45.455 26.78 1.07 35.86 3.06
3072 3186 0.608130 AGCATCGCCTACAGTGACAA 59.392 50.000 0.00 0.00 37.96 3.18
3137 3251 6.633634 TCGGTTAGAACTTGCGTTTTATTTTG 59.366 34.615 0.00 0.00 32.39 2.44
3144 3258 4.823790 AAATCGGTTAGAACTTGCGTTT 57.176 36.364 0.00 0.00 32.39 3.60
3145 3259 4.273969 TCAAAATCGGTTAGAACTTGCGTT 59.726 37.500 0.00 0.00 35.68 4.84
3146 3260 3.810941 TCAAAATCGGTTAGAACTTGCGT 59.189 39.130 0.00 0.00 0.00 5.24
3151 3265 6.934645 TCAGTTCATCAAAATCGGTTAGAACT 59.065 34.615 0.00 0.00 43.52 3.01
3184 3298 1.154654 GCGCAAGGACGAGTTTTCG 60.155 57.895 0.30 0.00 45.69 3.46
3207 3321 2.513204 CCAGGCATGACCAGCTCG 60.513 66.667 0.00 0.00 43.14 5.03
3222 3336 4.182433 TGGACCAGCACGTTGCCA 62.182 61.111 6.39 0.00 46.52 4.92
3228 3342 0.817634 TGTTTTCCTGGACCAGCACG 60.818 55.000 16.72 2.80 0.00 5.34
3231 3345 1.692411 AACTGTTTTCCTGGACCAGC 58.308 50.000 16.72 2.46 0.00 4.85
3234 3348 3.813724 GACAGTAACTGTTTTCCTGGACC 59.186 47.826 14.74 0.00 45.44 4.46
3267 3381 0.820226 CTCTCTCGTCATCCTTGGCA 59.180 55.000 0.00 0.00 0.00 4.92
3294 3408 3.238597 CTCCCCTCTAAATCTCTCCTGG 58.761 54.545 0.00 0.00 0.00 4.45
3307 3421 2.037527 GTCCGACCACTCCCCTCT 59.962 66.667 0.00 0.00 0.00 3.69
3324 3438 3.315418 CCATCAGTGAGATATGCTGTCG 58.685 50.000 0.00 0.00 34.43 4.35
3383 3497 6.405953 CGAGGAACATACTCCTACTTGTCATT 60.406 42.308 0.00 0.00 46.33 2.57
3385 3499 4.398358 CGAGGAACATACTCCTACTTGTCA 59.602 45.833 0.00 0.00 46.33 3.58
3386 3500 4.202030 CCGAGGAACATACTCCTACTTGTC 60.202 50.000 0.00 0.00 46.33 3.18
3387 3501 3.700038 CCGAGGAACATACTCCTACTTGT 59.300 47.826 0.00 0.00 46.33 3.16
3388 3502 3.491104 GCCGAGGAACATACTCCTACTTG 60.491 52.174 0.00 0.00 46.33 3.16
3389 3503 2.694109 GCCGAGGAACATACTCCTACTT 59.306 50.000 0.00 0.00 46.33 2.24
3390 3504 2.091775 AGCCGAGGAACATACTCCTACT 60.092 50.000 0.00 0.00 46.33 2.57
3396 3510 2.180276 AGAACAGCCGAGGAACATACT 58.820 47.619 0.00 0.00 0.00 2.12
3397 3511 2.674796 AGAACAGCCGAGGAACATAC 57.325 50.000 0.00 0.00 0.00 2.39
3399 3513 2.224523 TGAAAGAACAGCCGAGGAACAT 60.225 45.455 0.00 0.00 0.00 2.71
3401 3515 1.531578 GTGAAAGAACAGCCGAGGAAC 59.468 52.381 0.00 0.00 0.00 3.62
3404 3518 1.151668 CAGTGAAAGAACAGCCGAGG 58.848 55.000 0.00 0.00 0.00 4.63
3409 3523 3.004106 ACAGATTGCAGTGAAAGAACAGC 59.996 43.478 0.00 0.00 33.52 4.40
3411 3525 4.923893 CAACAGATTGCAGTGAAAGAACA 58.076 39.130 0.00 0.00 0.00 3.18
3439 3602 3.350833 ACAGATGGTTCTCCTTGAATGC 58.649 45.455 0.00 0.00 36.99 3.56
3440 3603 3.620374 CGACAGATGGTTCTCCTTGAATG 59.380 47.826 0.00 0.00 36.99 2.67
3441 3604 3.261897 ACGACAGATGGTTCTCCTTGAAT 59.738 43.478 0.00 0.00 36.99 2.57
3442 3605 2.632996 ACGACAGATGGTTCTCCTTGAA 59.367 45.455 0.00 0.00 34.23 2.69
3444 3607 2.232452 AGACGACAGATGGTTCTCCTTG 59.768 50.000 0.00 0.00 34.23 3.61
3455 3618 2.803956 TCCTGGTTGTAGACGACAGAT 58.196 47.619 2.55 0.00 39.88 2.90
3456 3619 2.281539 TCCTGGTTGTAGACGACAGA 57.718 50.000 2.55 0.00 39.88 3.41
3518 3681 3.131396 GACCATGTTGATACGGACATCC 58.869 50.000 0.00 0.00 34.42 3.51
3533 3696 5.188434 ACTGGTTACATTGAGATGACCATG 58.812 41.667 0.00 0.00 38.65 3.66
3534 3697 5.441718 ACTGGTTACATTGAGATGACCAT 57.558 39.130 0.00 0.00 38.65 3.55
3535 3698 4.908601 ACTGGTTACATTGAGATGACCA 57.091 40.909 0.00 0.00 37.65 4.02
3536 3699 5.585047 GGTTACTGGTTACATTGAGATGACC 59.415 44.000 0.00 0.00 36.73 4.02
3537 3700 5.291128 CGGTTACTGGTTACATTGAGATGAC 59.709 44.000 0.00 0.00 36.73 3.06
3538 3701 5.416083 CGGTTACTGGTTACATTGAGATGA 58.584 41.667 0.00 0.00 36.73 2.92
3539 3702 4.570772 CCGGTTACTGGTTACATTGAGATG 59.429 45.833 1.23 0.00 39.25 2.90
3540 3703 4.224370 ACCGGTTACTGGTTACATTGAGAT 59.776 41.667 10.55 0.00 35.82 2.75
3541 3704 3.579586 ACCGGTTACTGGTTACATTGAGA 59.420 43.478 10.55 0.00 35.82 3.27
3542 3705 3.934068 ACCGGTTACTGGTTACATTGAG 58.066 45.455 10.55 0.00 35.82 3.02
3552 3715 1.974875 GGCCCAAACCGGTTACTGG 60.975 63.158 25.34 25.34 0.00 4.00
3560 3723 2.824041 CGATCCTGGCCCAAACCG 60.824 66.667 0.00 0.00 0.00 4.44
3576 3739 8.247562 TGGATTATACAAGAAAATCCCAAAACG 58.752 33.333 10.06 0.00 45.37 3.60
3614 3777 5.344743 AACATCAGTTCTGATGATACGGT 57.655 39.130 34.68 17.74 46.25 4.83
3712 3937 6.348213 CTGTATGCACAACACCTTTAGGTTAC 60.348 42.308 0.00 0.00 39.48 2.50
3736 3961 4.471904 TGCTCGGTTGAACAGATTATCT 57.528 40.909 0.00 0.00 0.00 1.98
3737 3962 5.741388 AATGCTCGGTTGAACAGATTATC 57.259 39.130 0.00 0.00 0.00 1.75
3738 3963 5.237344 GCTAATGCTCGGTTGAACAGATTAT 59.763 40.000 0.00 0.00 36.03 1.28
3739 3964 4.570772 GCTAATGCTCGGTTGAACAGATTA 59.429 41.667 0.00 0.00 36.03 1.75
3740 3965 3.375299 GCTAATGCTCGGTTGAACAGATT 59.625 43.478 0.00 0.00 36.03 2.40
3741 3966 2.939103 GCTAATGCTCGGTTGAACAGAT 59.061 45.455 0.00 0.00 36.03 2.90
3742 3967 2.346803 GCTAATGCTCGGTTGAACAGA 58.653 47.619 0.00 0.00 36.03 3.41
3743 3968 2.813779 GCTAATGCTCGGTTGAACAG 57.186 50.000 0.00 0.00 36.03 3.16
3755 3980 3.944015 ACAAGTTGAGATGGAGCTAATGC 59.056 43.478 10.54 0.00 40.05 3.56
3756 3981 4.940046 ACACAAGTTGAGATGGAGCTAATG 59.060 41.667 10.54 0.00 0.00 1.90
3757 3982 5.171339 ACACAAGTTGAGATGGAGCTAAT 57.829 39.130 10.54 0.00 0.00 1.73
3758 3983 4.623932 ACACAAGTTGAGATGGAGCTAA 57.376 40.909 10.54 0.00 0.00 3.09
3759 3984 4.382040 GCTACACAAGTTGAGATGGAGCTA 60.382 45.833 17.72 0.00 0.00 3.32
3760 3985 3.618507 GCTACACAAGTTGAGATGGAGCT 60.619 47.826 17.72 0.00 0.00 4.09
3761 3986 2.675348 GCTACACAAGTTGAGATGGAGC 59.325 50.000 10.54 11.45 0.00 4.70
3762 3987 3.265791 GGCTACACAAGTTGAGATGGAG 58.734 50.000 10.54 4.84 0.00 3.86
3763 3988 2.637382 TGGCTACACAAGTTGAGATGGA 59.363 45.455 10.54 0.00 0.00 3.41
3764 3989 2.744202 GTGGCTACACAAGTTGAGATGG 59.256 50.000 10.54 0.00 46.90 3.51
3777 4002 0.601558 GACTGTTCGGAGTGGCTACA 59.398 55.000 2.02 0.00 0.00 2.74
3778 4003 0.601558 TGACTGTTCGGAGTGGCTAC 59.398 55.000 0.00 0.00 0.00 3.58
3788 4013 2.674852 CCAGATTGATGGTGACTGTTCG 59.325 50.000 0.00 0.00 35.47 3.95
3789 4014 3.012518 CCCAGATTGATGGTGACTGTTC 58.987 50.000 0.00 0.00 38.81 3.18
3850 4075 5.596361 ACATTGGTTGATGGTGACTGTTTTA 59.404 36.000 0.00 0.00 0.00 1.52



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.