Multiple sequence alignment - TraesCS6D01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G138000 chr6D 100.000 3320 0 0 1 3320 106696113 106699432 0.000000e+00 6131.0
1 TraesCS6D01G138000 chr6B 91.526 2785 110 48 591 3320 193891032 193893745 0.000000e+00 3720.0
2 TraesCS6D01G138000 chr6A 94.607 1502 48 20 1839 3320 129933856 129935344 0.000000e+00 2294.0
3 TraesCS6D01G138000 chr6A 93.313 987 41 13 836 1814 129932889 129933858 0.000000e+00 1434.0
4 TraesCS6D01G138000 chr6A 93.997 583 35 0 1 583 549291099 549290517 0.000000e+00 883.0
5 TraesCS6D01G138000 chr6A 89.669 242 11 7 591 820 129932597 129932836 2.500000e-76 296.0
6 TraesCS6D01G138000 chr2A 94.683 583 31 0 1 583 52589818 52590400 0.000000e+00 905.0
7 TraesCS6D01G138000 chr7A 94.511 583 32 0 1 583 510908614 510908032 0.000000e+00 900.0
8 TraesCS6D01G138000 chr7A 89.362 47 5 0 1989 2035 692054979 692054933 3.580000e-05 60.2
9 TraesCS6D01G138000 chr5A 93.654 583 36 1 1 583 29628824 29628243 0.000000e+00 870.0
10 TraesCS6D01G138000 chr5A 87.931 58 6 1 1402 1459 42630239 42630295 2.140000e-07 67.6
11 TraesCS6D01G138000 chr5D 93.643 582 34 2 2 583 483218158 483217580 0.000000e+00 867.0
12 TraesCS6D01G138000 chr2B 91.424 583 50 0 1 583 689476498 689477080 0.000000e+00 800.0
13 TraesCS6D01G138000 chr1B 90.223 583 52 3 1 583 15570510 15569933 0.000000e+00 756.0
14 TraesCS6D01G138000 chr2D 90.459 545 50 2 1 544 336904435 336903892 0.000000e+00 717.0
15 TraesCS6D01G138000 chr2D 90.459 545 50 2 1 544 336953688 336953145 0.000000e+00 717.0
16 TraesCS6D01G138000 chrUn 90.385 52 4 1 1408 1459 262578062 262578112 2.140000e-07 67.6
17 TraesCS6D01G138000 chrUn 90.385 52 4 1 1408 1459 262587678 262587728 2.140000e-07 67.6
18 TraesCS6D01G138000 chrUn 90.385 52 4 1 1408 1459 271996380 271996430 2.140000e-07 67.6
19 TraesCS6D01G138000 chr4A 90.385 52 4 1 1408 1459 639965840 639965890 2.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G138000 chr6D 106696113 106699432 3319 False 6131.000000 6131 100.000000 1 3320 1 chr6D.!!$F1 3319
1 TraesCS6D01G138000 chr6B 193891032 193893745 2713 False 3720.000000 3720 91.526000 591 3320 1 chr6B.!!$F1 2729
2 TraesCS6D01G138000 chr6A 129932597 129935344 2747 False 1341.333333 2294 92.529667 591 3320 3 chr6A.!!$F1 2729
3 TraesCS6D01G138000 chr6A 549290517 549291099 582 True 883.000000 883 93.997000 1 583 1 chr6A.!!$R1 582
4 TraesCS6D01G138000 chr2A 52589818 52590400 582 False 905.000000 905 94.683000 1 583 1 chr2A.!!$F1 582
5 TraesCS6D01G138000 chr7A 510908032 510908614 582 True 900.000000 900 94.511000 1 583 1 chr7A.!!$R1 582
6 TraesCS6D01G138000 chr5A 29628243 29628824 581 True 870.000000 870 93.654000 1 583 1 chr5A.!!$R1 582
7 TraesCS6D01G138000 chr5D 483217580 483218158 578 True 867.000000 867 93.643000 2 583 1 chr5D.!!$R1 581
8 TraesCS6D01G138000 chr2B 689476498 689477080 582 False 800.000000 800 91.424000 1 583 1 chr2B.!!$F1 582
9 TraesCS6D01G138000 chr1B 15569933 15570510 577 True 756.000000 756 90.223000 1 583 1 chr1B.!!$R1 582
10 TraesCS6D01G138000 chr2D 336903892 336904435 543 True 717.000000 717 90.459000 1 544 1 chr2D.!!$R1 543
11 TraesCS6D01G138000 chr2D 336953145 336953688 543 True 717.000000 717 90.459000 1 544 1 chr2D.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.542938 AGCTGTGTGGCTGAGACCTA 60.543 55.000 0.0 0.0 41.43 3.08 F
858 913 1.001746 CTGTTCCTGCTCTTGCTCTGA 59.998 52.381 0.0 0.0 40.48 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1343 0.040958 CAGCACCGTCTTGAAGCAAC 60.041 55.0 0.0 0.0 0.0 4.17 R
2854 2955 0.179004 GACACCACCATTGACCACCA 60.179 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 0.542938 AGCTGTGTGGCTGAGACCTA 60.543 55.000 0.00 0.00 41.43 3.08
181 182 1.992667 GATCTTGCGTGATCACAACGA 59.007 47.619 24.93 15.19 41.65 3.85
240 241 4.551702 TGCCACAATGCTTTAGAGTCTA 57.448 40.909 0.00 0.00 0.00 2.59
256 257 1.130561 GTCTAAACTTGCGGCCATCAC 59.869 52.381 2.24 0.00 0.00 3.06
274 275 1.204146 ACAGAGGGTGTGTCACTTGT 58.796 50.000 4.27 0.00 38.28 3.16
294 295 6.942576 ACTTGTTTTACAATGGAGTGAGCTAT 59.057 34.615 0.00 0.00 37.48 2.97
295 296 6.741992 TGTTTTACAATGGAGTGAGCTATG 57.258 37.500 0.00 0.00 0.00 2.23
461 462 9.853555 CATAGTCAAAACAATGTAAGCCATTTA 57.146 29.630 0.00 0.00 41.93 1.40
493 494 6.381994 TCTTTTGGTAGAACTATGGGTCGTAT 59.618 38.462 0.00 0.00 0.00 3.06
535 536 1.726853 CCTGATGAGGTCGTCAAACC 58.273 55.000 0.00 0.00 40.93 3.27
751 754 3.140895 CCCAGGATATCCACCTTCCATTT 59.859 47.826 23.81 0.00 38.89 2.32
768 771 5.465935 TCCATTTCCACGTGCTTATTTTTC 58.534 37.500 10.91 0.00 0.00 2.29
769 772 5.242838 TCCATTTCCACGTGCTTATTTTTCT 59.757 36.000 10.91 0.00 0.00 2.52
770 773 5.572896 CCATTTCCACGTGCTTATTTTTCTC 59.427 40.000 10.91 0.00 0.00 2.87
858 913 1.001746 CTGTTCCTGCTCTTGCTCTGA 59.998 52.381 0.00 0.00 40.48 3.27
880 935 1.884235 AAGAAAGAACCCACGCTCAG 58.116 50.000 0.00 0.00 0.00 3.35
898 953 2.661866 GCGTCTGCTGGACACGTT 60.662 61.111 10.10 0.00 44.70 3.99
902 957 1.455786 CGTCTGCTGGACACGTTAAAG 59.544 52.381 10.10 0.00 44.70 1.85
906 961 4.034742 GTCTGCTGGACACGTTAAAGAAAA 59.965 41.667 0.00 0.00 43.94 2.29
907 962 4.272504 TCTGCTGGACACGTTAAAGAAAAG 59.727 41.667 0.00 0.00 0.00 2.27
908 963 3.314080 TGCTGGACACGTTAAAGAAAAGG 59.686 43.478 0.00 0.00 0.00 3.11
909 964 3.562557 GCTGGACACGTTAAAGAAAAGGA 59.437 43.478 0.00 0.00 0.00 3.36
910 965 4.035909 GCTGGACACGTTAAAGAAAAGGAA 59.964 41.667 0.00 0.00 0.00 3.36
1105 1164 2.191128 TTCCCTTTGCTCTGCTTCTC 57.809 50.000 0.00 0.00 0.00 2.87
1126 1186 2.103143 CTCTGCCGCCGTGTAGAG 59.897 66.667 6.38 6.38 38.46 2.43
1196 1256 4.559862 TCTTCTTCCAGGGAACATCTTC 57.440 45.455 0.00 0.00 0.00 2.87
1242 1304 2.662070 TAAGCCCGTCCCCCTTTCG 61.662 63.158 0.00 0.00 0.00 3.46
1295 1357 1.063806 CTCGAGTTGCTTCAAGACGG 58.936 55.000 3.62 0.00 0.00 4.79
1569 1631 2.267961 CACCCTACCCACCGCTTC 59.732 66.667 0.00 0.00 0.00 3.86
1582 1644 2.873288 GCTTCTCCTTTGCTGCCG 59.127 61.111 0.00 0.00 0.00 5.69
1608 1675 4.065088 TCTGTAAGTTTGACTGATGTGGC 58.935 43.478 0.00 0.00 33.76 5.01
1644 1715 4.996434 GTGTCCGTGCTGCTGGCT 62.996 66.667 0.00 0.00 42.39 4.75
1792 1863 3.937706 GTCCATCATTGTGAGTCCTGAAG 59.062 47.826 0.00 0.00 0.00 3.02
1817 1888 9.530633 AGTATTTCCTGCTTTATAACTAACTCG 57.469 33.333 0.00 0.00 0.00 4.18
1818 1889 9.525409 GTATTTCCTGCTTTATAACTAACTCGA 57.475 33.333 0.00 0.00 0.00 4.04
1820 1891 8.836268 TTTCCTGCTTTATAACTAACTCGAAA 57.164 30.769 0.00 0.00 0.00 3.46
1821 1892 9.444600 TTTCCTGCTTTATAACTAACTCGAAAT 57.555 29.630 0.00 0.00 0.00 2.17
1823 1894 9.745880 TCCTGCTTTATAACTAACTCGAAATAG 57.254 33.333 3.29 3.29 0.00 1.73
1824 1895 8.979574 CCTGCTTTATAACTAACTCGAAATAGG 58.020 37.037 8.52 0.00 0.00 2.57
1825 1896 8.361592 TGCTTTATAACTAACTCGAAATAGGC 57.638 34.615 8.52 2.41 0.00 3.93
1826 1897 8.202137 TGCTTTATAACTAACTCGAAATAGGCT 58.798 33.333 8.52 0.00 0.00 4.58
1827 1898 9.043079 GCTTTATAACTAACTCGAAATAGGCTT 57.957 33.333 0.00 0.00 0.00 4.35
1829 1900 9.538508 TTTATAACTAACTCGAAATAGGCTTCC 57.461 33.333 0.00 0.00 0.00 3.46
1830 1901 4.043037 ACTAACTCGAAATAGGCTTCCG 57.957 45.455 0.00 0.00 0.00 4.30
1831 1902 1.653151 AACTCGAAATAGGCTTCCGC 58.347 50.000 0.00 0.00 0.00 5.54
1832 1903 0.535335 ACTCGAAATAGGCTTCCGCA 59.465 50.000 0.00 0.00 38.10 5.69
1833 1904 1.066430 ACTCGAAATAGGCTTCCGCAA 60.066 47.619 0.00 0.00 38.10 4.85
1834 1905 2.006888 CTCGAAATAGGCTTCCGCAAA 58.993 47.619 0.00 0.00 38.10 3.68
1852 1923 8.556213 TCCGCAAATTATAACTAACTCAAACT 57.444 30.769 0.00 0.00 0.00 2.66
2227 2309 1.028330 CAATGGCATCGGCACAGTCT 61.028 55.000 0.00 0.00 41.84 3.24
2238 2320 2.350522 GGCACAGTCTTAGGTGTCATG 58.649 52.381 0.00 0.00 39.36 3.07
2259 2341 6.772233 TCATGCAGTTGTTGTTATATGCCTAT 59.228 34.615 0.00 0.00 32.77 2.57
2329 2411 1.063027 CACATACATGAGCGTGCAAGG 59.937 52.381 0.00 0.00 0.00 3.61
2386 2468 6.204688 TGTTATATGCGGCTTTCCTATTTCTG 59.795 38.462 0.00 0.00 0.00 3.02
2428 2511 0.865769 GCGTCTCCATCACACGTTTT 59.134 50.000 0.00 0.00 35.91 2.43
2508 2591 3.225177 TCGTTAAACAAACATGGGGGA 57.775 42.857 0.00 0.00 38.03 4.81
2512 2595 3.257375 GTTAAACAAACATGGGGGACCTC 59.743 47.826 0.00 0.00 44.29 3.85
2528 2611 6.253946 GGGACCTCTGGGGATAATATAATG 57.746 45.833 0.00 0.00 38.76 1.90
2530 2613 5.731678 GGACCTCTGGGGATAATATAATGGT 59.268 44.000 0.00 0.00 38.76 3.55
2531 2614 6.217693 GGACCTCTGGGGATAATATAATGGTT 59.782 42.308 0.00 0.00 38.76 3.67
2532 2615 7.032598 ACCTCTGGGGATAATATAATGGTTG 57.967 40.000 0.00 0.00 38.76 3.77
2533 2616 5.888161 CCTCTGGGGATAATATAATGGTTGC 59.112 44.000 0.00 0.00 37.23 4.17
2534 2617 5.496556 TCTGGGGATAATATAATGGTTGCG 58.503 41.667 0.00 0.00 0.00 4.85
2535 2618 5.013704 TCTGGGGATAATATAATGGTTGCGT 59.986 40.000 0.00 0.00 0.00 5.24
2846 2947 8.815565 TTTAGCATGAATTATAACTTGGACCA 57.184 30.769 0.00 0.00 0.00 4.02
2847 2948 8.815565 TTAGCATGAATTATAACTTGGACCAA 57.184 30.769 6.76 6.76 0.00 3.67
2848 2949 7.338800 AGCATGAATTATAACTTGGACCAAG 57.661 36.000 29.13 29.13 45.85 3.61
3124 3230 2.593978 CCTACAGCCTGCCTGCAT 59.406 61.111 0.00 0.00 45.78 3.96
3154 3260 6.325596 GGTTGAGGTTCTCTGCATTATTTTC 58.674 40.000 0.00 0.00 0.00 2.29
3158 3264 6.151648 TGAGGTTCTCTGCATTATTTTCCTTG 59.848 38.462 0.00 0.00 0.00 3.61
3177 3283 4.760204 CCTTGTGTAAAAAGGTGGAGTAGG 59.240 45.833 0.00 0.00 46.78 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.014615 AGCAGAAAAAGAACAATCCAACATAGT 59.985 33.333 0.00 0.00 0.00 2.12
15 16 4.141981 TGCAGCAGAAAAAGAACAATCCAA 60.142 37.500 0.00 0.00 0.00 3.53
90 91 8.912988 TGTATTGAGTTTCAATTGTCCTTCTTT 58.087 29.630 9.34 0.00 44.03 2.52
181 182 6.265649 ACGACAAGCACTGAGGACTATATTAT 59.734 38.462 0.00 0.00 0.00 1.28
240 241 0.537143 TCTGTGATGGCCGCAAGTTT 60.537 50.000 0.00 0.00 34.45 2.66
256 257 2.332063 AACAAGTGACACACCCTCTG 57.668 50.000 8.59 0.00 34.49 3.35
264 265 5.971202 CACTCCATTGTAAAACAAGTGACAC 59.029 40.000 0.00 0.00 41.94 3.67
274 275 9.764363 CTATACATAGCTCACTCCATTGTAAAA 57.236 33.333 0.00 0.00 0.00 1.52
461 462 7.998964 CCCATAGTTCTACCAAAAGATACCAAT 59.001 37.037 0.00 0.00 0.00 3.16
484 485 0.539518 CCACACCATGATACGACCCA 59.460 55.000 0.00 0.00 0.00 4.51
493 494 0.994247 AGATCCAAGCCACACCATGA 59.006 50.000 0.00 0.00 0.00 3.07
535 536 3.969352 CGAGCTACTAGCAGAATTACACG 59.031 47.826 10.73 0.00 45.56 4.49
583 584 3.010250 GGACACCCTGGACCTCTATTTTT 59.990 47.826 0.00 0.00 0.00 1.94
584 585 2.576648 GGACACCCTGGACCTCTATTTT 59.423 50.000 0.00 0.00 0.00 1.82
585 586 2.197465 GGACACCCTGGACCTCTATTT 58.803 52.381 0.00 0.00 0.00 1.40
586 587 1.080498 TGGACACCCTGGACCTCTATT 59.920 52.381 0.00 0.00 0.00 1.73
587 588 0.716591 TGGACACCCTGGACCTCTAT 59.283 55.000 0.00 0.00 0.00 1.98
588 589 0.252103 GTGGACACCCTGGACCTCTA 60.252 60.000 0.00 0.00 0.00 2.43
589 590 1.536662 GTGGACACCCTGGACCTCT 60.537 63.158 0.00 0.00 0.00 3.69
751 754 5.060506 TCAAGAGAAAAATAAGCACGTGGA 58.939 37.500 18.88 0.00 0.00 4.02
768 771 4.641989 CCACCCCTACAATCAAATCAAGAG 59.358 45.833 0.00 0.00 0.00 2.85
769 772 4.290985 TCCACCCCTACAATCAAATCAAGA 59.709 41.667 0.00 0.00 0.00 3.02
770 773 4.599041 TCCACCCCTACAATCAAATCAAG 58.401 43.478 0.00 0.00 0.00 3.02
858 913 3.020984 TGAGCGTGGGTTCTTTCTTTTT 58.979 40.909 0.00 0.00 0.00 1.94
1122 1182 1.682451 CCAAATCCGGCCGTCCTCTA 61.682 60.000 26.12 1.98 0.00 2.43
1126 1186 2.360726 AACCAAATCCGGCCGTCC 60.361 61.111 26.12 0.00 0.00 4.79
1196 1256 0.459237 AGATGAAGAGCACGAAGGCG 60.459 55.000 0.00 0.00 44.79 5.52
1232 1294 1.272258 GGGTTGAAATCGAAAGGGGGA 60.272 52.381 0.00 0.00 0.00 4.81
1242 1304 7.315890 AGAAGAAATGAAATCGGGTTGAAATC 58.684 34.615 0.00 0.00 0.00 2.17
1281 1343 0.040958 CAGCACCGTCTTGAAGCAAC 60.041 55.000 0.00 0.00 0.00 4.17
1295 1357 2.151881 ATCGATCAGATCAGCAGCAC 57.848 50.000 11.12 0.00 33.45 4.40
1320 1382 1.554617 TGAATGTTGGCCTGAGATCGA 59.445 47.619 3.32 0.00 0.00 3.59
1462 1524 3.698463 GTGTTGACGGTGGCGACG 61.698 66.667 0.00 0.00 37.36 5.12
1582 1644 4.697352 ACATCAGTCAAACTTACAGATGCC 59.303 41.667 8.08 0.00 41.80 4.40
1589 1656 4.757149 AGAAGCCACATCAGTCAAACTTAC 59.243 41.667 0.00 0.00 0.00 2.34
1608 1675 0.522180 CCTTGAGCTGCAGCAAGAAG 59.478 55.000 38.24 30.92 43.11 2.85
1644 1715 1.525077 GAACACGCAGAACACCCCA 60.525 57.895 0.00 0.00 0.00 4.96
1792 1863 9.525409 TCGAGTTAGTTATAAAGCAGGAAATAC 57.475 33.333 0.00 0.00 0.00 1.89
1825 1896 9.274065 GTTTGAGTTAGTTATAATTTGCGGAAG 57.726 33.333 0.00 0.00 0.00 3.46
1826 1897 9.005777 AGTTTGAGTTAGTTATAATTTGCGGAA 57.994 29.630 0.00 0.00 0.00 4.30
1827 1898 8.556213 AGTTTGAGTTAGTTATAATTTGCGGA 57.444 30.769 0.00 0.00 0.00 5.54
1828 1899 9.061610 CAAGTTTGAGTTAGTTATAATTTGCGG 57.938 33.333 0.00 0.00 0.00 5.69
1829 1900 9.607285 ACAAGTTTGAGTTAGTTATAATTTGCG 57.393 29.630 0.00 0.00 0.00 4.85
1885 1959 4.278310 GCCAAACCCATCAAACCTACTAT 58.722 43.478 0.00 0.00 0.00 2.12
1887 1961 2.525368 GCCAAACCCATCAAACCTACT 58.475 47.619 0.00 0.00 0.00 2.57
2227 2309 3.550820 ACAACAACTGCATGACACCTAA 58.449 40.909 0.00 0.00 0.00 2.69
2238 2320 7.925993 TGTAATAGGCATATAACAACAACTGC 58.074 34.615 0.00 0.00 0.00 4.40
2259 2341 6.183360 CGTCTCTCGATCCTTTTCTACTGTAA 60.183 42.308 0.00 0.00 42.86 2.41
2329 2411 5.063438 GCTTTTCAAACTCAACCTTGTTTCC 59.937 40.000 0.00 0.00 34.60 3.13
2386 2468 3.690460 ACCATGATCAGGAAACTCAACC 58.310 45.455 9.37 0.00 40.21 3.77
2508 2591 6.524192 GCAACCATTATATTATCCCCAGAGGT 60.524 42.308 0.00 0.00 36.75 3.85
2512 2595 5.253330 ACGCAACCATTATATTATCCCCAG 58.747 41.667 0.00 0.00 0.00 4.45
2516 2599 6.170506 TGGAGACGCAACCATTATATTATCC 58.829 40.000 0.00 0.00 0.00 2.59
2518 2601 5.643777 GCTGGAGACGCAACCATTATATTAT 59.356 40.000 0.00 0.00 35.54 1.28
2519 2602 4.994852 GCTGGAGACGCAACCATTATATTA 59.005 41.667 0.00 0.00 35.54 0.98
2520 2603 3.815401 GCTGGAGACGCAACCATTATATT 59.185 43.478 0.00 0.00 35.54 1.28
2521 2604 3.071602 AGCTGGAGACGCAACCATTATAT 59.928 43.478 0.00 0.00 35.54 0.86
2522 2605 2.434336 AGCTGGAGACGCAACCATTATA 59.566 45.455 0.00 0.00 35.54 0.98
2528 2611 1.739562 CAGAGCTGGAGACGCAACC 60.740 63.158 0.00 0.00 33.30 3.77
2530 2613 0.601046 CAACAGAGCTGGAGACGCAA 60.601 55.000 0.00 0.00 34.19 4.85
2531 2614 1.005748 CAACAGAGCTGGAGACGCA 60.006 57.895 0.00 0.00 34.19 5.24
2532 2615 2.386660 GCAACAGAGCTGGAGACGC 61.387 63.158 0.00 0.00 34.19 5.19
2533 2616 1.739562 GGCAACAGAGCTGGAGACG 60.740 63.158 0.00 0.00 34.19 4.18
2534 2617 1.372683 TGGCAACAGAGCTGGAGAC 59.627 57.895 0.00 0.00 46.17 3.36
2535 2618 3.890313 TGGCAACAGAGCTGGAGA 58.110 55.556 0.00 0.00 46.17 3.71
2682 2765 7.520614 CGCAAGTTCTCTTACTCTTGGATTTTT 60.521 37.037 0.00 0.00 38.06 1.94
2684 2767 5.409826 CGCAAGTTCTCTTACTCTTGGATTT 59.590 40.000 0.00 0.00 38.06 2.17
2719 2802 7.480760 AGGCACCATTTCTTACAATAAACAT 57.519 32.000 0.00 0.00 0.00 2.71
2782 2866 2.300437 AGTTGACGCTTCTTAGCCTTCT 59.700 45.455 0.00 0.00 44.86 2.85
2788 2872 2.410262 CGCACAAGTTGACGCTTCTTAG 60.410 50.000 10.54 0.00 0.00 2.18
2845 2946 3.888930 ACCATTGACCACCAAGTAACTTG 59.111 43.478 0.00 0.00 40.75 3.16
2846 2947 3.888930 CACCATTGACCACCAAGTAACTT 59.111 43.478 0.00 0.00 38.31 2.66
2847 2948 3.486383 CACCATTGACCACCAAGTAACT 58.514 45.455 0.00 0.00 38.31 2.24
2848 2949 2.556622 CCACCATTGACCACCAAGTAAC 59.443 50.000 0.00 0.00 38.31 2.50
2849 2950 2.175931 ACCACCATTGACCACCAAGTAA 59.824 45.455 0.00 0.00 38.31 2.24
2850 2951 1.777878 ACCACCATTGACCACCAAGTA 59.222 47.619 0.00 0.00 38.31 2.24
2851 2952 0.555769 ACCACCATTGACCACCAAGT 59.444 50.000 0.00 0.00 38.31 3.16
2852 2953 0.961019 CACCACCATTGACCACCAAG 59.039 55.000 0.00 0.00 38.31 3.61
2853 2954 0.260230 ACACCACCATTGACCACCAA 59.740 50.000 0.00 0.00 39.41 3.67
2854 2955 0.179004 GACACCACCATTGACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2855 2956 0.179004 TGACACCACCATTGACCACC 60.179 55.000 0.00 0.00 0.00 4.61
2856 2957 0.951558 GTGACACCACCATTGACCAC 59.048 55.000 0.00 0.00 37.33 4.16
2916 3022 4.582701 TGCTCAAACATCAATTTTCCGT 57.417 36.364 0.00 0.00 0.00 4.69
3154 3260 4.760204 CCTACTCCACCTTTTTACACAAGG 59.240 45.833 0.00 0.00 45.74 3.61
3158 3264 3.079578 GCCCTACTCCACCTTTTTACAC 58.920 50.000 0.00 0.00 0.00 2.90
3177 3283 3.195182 ACTCGAGGACCTTAAAACTAGCC 59.805 47.826 18.41 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.