Multiple sequence alignment - TraesCS6D01G137300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G137300 chr6D 100.000 4744 0 0 1 4744 106041671 106046414 0.000000e+00 8761.0
1 TraesCS6D01G137300 chr6D 93.750 128 5 2 1 125 414626347 414626220 6.270000e-44 189.0
2 TraesCS6D01G137300 chr6D 81.250 160 24 4 4349 4507 16608302 16608148 1.790000e-24 124.0
3 TraesCS6D01G137300 chr6D 80.315 127 22 3 2767 2892 39682257 39682381 5.050000e-15 93.5
4 TraesCS6D01G137300 chr6B 92.653 1647 91 19 2506 4138 192722861 192724491 0.000000e+00 2344.0
5 TraesCS6D01G137300 chr6B 88.402 2052 96 39 499 2517 192719448 192721390 0.000000e+00 2340.0
6 TraesCS6D01G137300 chr6B 95.082 122 6 0 4 125 497600536 497600415 4.840000e-45 193.0
7 TraesCS6D01G137300 chr6B 78.199 211 35 9 4174 4380 706629380 706629177 1.790000e-24 124.0
8 TraesCS6D01G137300 chr6A 91.859 1646 98 20 2498 4130 129255665 129257287 0.000000e+00 2265.0
9 TraesCS6D01G137300 chr6A 88.584 1892 89 34 639 2505 129253411 129255200 0.000000e+00 2180.0
10 TraesCS6D01G137300 chr6A 90.306 588 31 14 68 641 129252798 129253373 0.000000e+00 747.0
11 TraesCS6D01G137300 chr6A 84.286 210 27 6 4538 4743 559206014 559205807 2.900000e-47 200.0
12 TraesCS6D01G137300 chr6A 80.465 215 31 7 4174 4380 18070608 18070397 2.290000e-33 154.0
13 TraesCS6D01G137300 chr6A 78.740 127 24 3 2767 2892 51438387 51438263 1.090000e-11 82.4
14 TraesCS6D01G137300 chr3A 94.924 197 6 3 1143 1339 56739606 56739798 5.960000e-79 305.0
15 TraesCS6D01G137300 chr3A 95.200 125 5 1 1 125 175133626 175133749 3.750000e-46 196.0
16 TraesCS6D01G137300 chr7D 93.564 202 8 4 1139 1339 546767835 546768032 3.590000e-76 296.0
17 TraesCS6D01G137300 chr7D 94.531 128 4 2 1 125 141345637 141345510 1.350000e-45 195.0
18 TraesCS6D01G137300 chr4B 92.386 197 9 3 1143 1339 550613960 550613770 4.680000e-70 276.0
19 TraesCS6D01G137300 chr7B 84.360 211 29 4 4536 4744 599254476 599254684 2.240000e-48 204.0
20 TraesCS6D01G137300 chr7B 77.652 264 49 9 4149 4408 708859313 708859056 8.220000e-33 152.0
21 TraesCS6D01G137300 chr7B 91.860 86 5 2 3011 3096 708484522 708484605 8.340000e-23 119.0
22 TraesCS6D01G137300 chr1A 95.276 127 4 1 1 125 293845877 293845751 2.900000e-47 200.0
23 TraesCS6D01G137300 chr2D 77.285 361 65 10 4395 4744 577331627 577331981 3.750000e-46 196.0
24 TraesCS6D01G137300 chr2D 94.488 127 5 1 1 125 150887021 150887147 1.350000e-45 195.0
25 TraesCS6D01G137300 chr2D 85.083 181 10 5 1139 1318 620610494 620610330 8.160000e-38 169.0
26 TraesCS6D01G137300 chr2D 79.524 210 40 3 4537 4744 602077989 602077781 3.830000e-31 147.0
27 TraesCS6D01G137300 chr3D 94.400 125 7 0 1 125 491847337 491847213 4.840000e-45 193.0
28 TraesCS6D01G137300 chr3D 82.075 212 33 5 4537 4744 571373564 571373774 4.880000e-40 176.0
29 TraesCS6D01G137300 chr3D 77.830 212 36 6 4267 4474 75093640 75093844 2.320000e-23 121.0
30 TraesCS6D01G137300 chr1D 93.701 127 6 1 1 125 10673374 10673248 6.270000e-44 189.0
31 TraesCS6D01G137300 chr1D 93.701 127 6 1 1 125 132305012 132304886 6.270000e-44 189.0
32 TraesCS6D01G137300 chr1D 77.966 236 40 9 4248 4477 474113709 474113480 2.300000e-28 137.0
33 TraesCS6D01G137300 chr4A 82.212 208 33 4 4537 4742 29183153 29183358 4.880000e-40 176.0
34 TraesCS6D01G137300 chr2B 85.057 174 15 7 4568 4734 29190338 29190169 2.940000e-37 167.0
35 TraesCS6D01G137300 chr2B 76.549 226 45 4 4236 4457 777949416 777949637 3.000000e-22 117.0
36 TraesCS6D01G137300 chr7A 81.132 212 34 5 4536 4744 731154275 731154483 1.060000e-36 165.0
37 TraesCS6D01G137300 chr5B 79.524 210 39 4 4536 4742 10269180 10269388 3.830000e-31 147.0
38 TraesCS6D01G137300 chr5B 94.000 50 1 2 3820 3867 11304958 11304909 1.830000e-09 75.0
39 TraesCS6D01G137300 chrUn 76.549 226 45 4 4236 4457 283602781 283603002 3.000000e-22 117.0
40 TraesCS6D01G137300 chrUn 76.549 226 45 4 4236 4457 416930337 416930116 3.000000e-22 117.0
41 TraesCS6D01G137300 chrUn 76.106 226 46 4 4236 4457 242570103 242569882 1.400000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G137300 chr6D 106041671 106046414 4743 False 8761.000000 8761 100.000000 1 4744 1 chr6D.!!$F2 4743
1 TraesCS6D01G137300 chr6B 192719448 192724491 5043 False 2342.000000 2344 90.527500 499 4138 2 chr6B.!!$F1 3639
2 TraesCS6D01G137300 chr6A 129252798 129257287 4489 False 1730.666667 2265 90.249667 68 4130 3 chr6A.!!$F1 4062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1013 0.179062 CCTACAGCTAGCCAAGGCAG 60.179 60.000 12.13 9.64 44.88 4.85 F
1740 1801 0.320771 ACTGTGCCCTCGATGTGAAC 60.321 55.000 0.00 0.00 0.00 3.18 F
2475 2574 1.004185 GTCGCTATGAATGCAGTGCAG 60.004 52.381 24.20 9.66 43.65 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2333 1.131693 TGGACTAGTATGCGTCACACG 59.868 52.381 0.00 0.0 45.88 4.49 R
3698 5422 1.153086 GCATACCCTGGCCTCTGTG 60.153 63.158 3.32 0.0 0.00 3.66 R
4406 6145 0.038166 ATGCCTCTTGCGGAAGGAAA 59.962 50.000 17.16 1.0 45.60 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
25 26 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
26 27 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
27 28 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
28 29 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
29 30 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
30 31 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
31 32 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
32 33 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
33 34 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
34 35 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
35 36 1.453524 CAGACGCAAGCGCTCATATAC 59.546 52.381 12.06 1.00 44.19 1.47
36 37 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
37 38 2.061773 GACGCAAGCGCTCATATACAT 58.938 47.619 12.06 0.00 44.19 2.29
38 39 1.794701 ACGCAAGCGCTCATATACATG 59.205 47.619 12.06 3.22 44.19 3.21
39 40 1.463034 CGCAAGCGCTCATATACATGC 60.463 52.381 12.06 13.77 35.30 4.06
40 41 1.532437 GCAAGCGCTCATATACATGCA 59.468 47.619 12.06 0.00 34.30 3.96
41 42 2.663879 GCAAGCGCTCATATACATGCAC 60.664 50.000 12.06 0.00 34.30 4.57
42 43 2.531522 AGCGCTCATATACATGCACA 57.468 45.000 2.64 0.00 31.73 4.57
43 44 3.049708 AGCGCTCATATACATGCACAT 57.950 42.857 2.64 0.00 31.73 3.21
44 45 4.192429 AGCGCTCATATACATGCACATA 57.808 40.909 2.64 0.00 31.73 2.29
45 46 3.928992 AGCGCTCATATACATGCACATAC 59.071 43.478 2.64 0.00 31.73 2.39
46 47 3.679502 GCGCTCATATACATGCACATACA 59.320 43.478 0.00 0.00 31.73 2.29
47 48 4.434725 GCGCTCATATACATGCACATACAC 60.435 45.833 0.00 0.00 31.73 2.90
48 49 4.925646 CGCTCATATACATGCACATACACT 59.074 41.667 0.00 0.00 31.73 3.55
49 50 5.406477 CGCTCATATACATGCACATACACTT 59.594 40.000 0.00 0.00 31.73 3.16
50 51 6.586082 CGCTCATATACATGCACATACACTTA 59.414 38.462 0.00 0.00 31.73 2.24
51 52 7.410835 CGCTCATATACATGCACATACACTTAC 60.411 40.741 0.00 0.00 31.73 2.34
52 53 7.148573 GCTCATATACATGCACATACACTTACC 60.149 40.741 0.00 0.00 31.73 2.85
53 54 7.158697 TCATATACATGCACATACACTTACCC 58.841 38.462 0.00 0.00 31.73 3.69
54 55 2.999331 ACATGCACATACACTTACCCC 58.001 47.619 0.00 0.00 0.00 4.95
55 56 2.576191 ACATGCACATACACTTACCCCT 59.424 45.455 0.00 0.00 0.00 4.79
56 57 3.778075 ACATGCACATACACTTACCCCTA 59.222 43.478 0.00 0.00 0.00 3.53
57 58 4.412199 ACATGCACATACACTTACCCCTAT 59.588 41.667 0.00 0.00 0.00 2.57
58 59 4.415881 TGCACATACACTTACCCCTATG 57.584 45.455 0.00 0.00 0.00 2.23
59 60 4.034410 TGCACATACACTTACCCCTATGA 58.966 43.478 0.00 0.00 0.00 2.15
60 61 4.471747 TGCACATACACTTACCCCTATGAA 59.528 41.667 0.00 0.00 0.00 2.57
61 62 4.814771 GCACATACACTTACCCCTATGAAC 59.185 45.833 0.00 0.00 0.00 3.18
62 63 5.628200 GCACATACACTTACCCCTATGAACA 60.628 44.000 0.00 0.00 0.00 3.18
63 64 5.815740 CACATACACTTACCCCTATGAACAC 59.184 44.000 0.00 0.00 0.00 3.32
64 65 5.486063 ACATACACTTACCCCTATGAACACA 59.514 40.000 0.00 0.00 0.00 3.72
65 66 4.281898 ACACTTACCCCTATGAACACAC 57.718 45.455 0.00 0.00 0.00 3.82
66 67 3.649023 ACACTTACCCCTATGAACACACA 59.351 43.478 0.00 0.00 0.00 3.72
67 68 4.000988 CACTTACCCCTATGAACACACAC 58.999 47.826 0.00 0.00 0.00 3.82
68 69 3.259064 CTTACCCCTATGAACACACACG 58.741 50.000 0.00 0.00 0.00 4.49
69 70 0.321298 ACCCCTATGAACACACACGC 60.321 55.000 0.00 0.00 0.00 5.34
70 71 0.321210 CCCCTATGAACACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
71 72 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
72 73 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
73 74 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
74 75 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
75 76 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
76 77 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
88 89 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
91 92 2.329267 CACCCTATCCCTATGAGCACA 58.671 52.381 0.00 0.00 0.00 4.57
99 100 2.103094 TCCCTATGAGCACATCCGAAAG 59.897 50.000 0.00 0.00 37.87 2.62
109 110 0.807667 CATCCGAAAGACTGAGCCGG 60.808 60.000 0.00 0.00 41.36 6.13
146 147 3.308438 AATAGTACACGTTGCTCCGTT 57.692 42.857 0.00 0.00 39.45 4.44
152 153 0.588730 CACGTTGCTCCGTTGTGTTG 60.589 55.000 0.00 0.00 39.45 3.33
189 190 9.720769 TGGAAGGTAAATATTCGAATTATCTCC 57.279 33.333 17.19 13.28 0.00 3.71
313 318 7.825270 TCTTCATAGTTACCCGCAAAAGAAATA 59.175 33.333 0.00 0.00 0.00 1.40
370 375 2.806434 AGCCCTGCACAATCATTAACA 58.194 42.857 0.00 0.00 0.00 2.41
610 623 1.965754 CTCTGAAAGGGAGCGGAGGG 61.966 65.000 0.00 0.00 35.24 4.30
626 639 3.430651 CGGAGGGCATAACAAATTGCAAT 60.431 43.478 5.99 5.99 40.66 3.56
697 750 8.380099 AGAAGGTCTCTGTATACTGGAGTATAG 58.620 40.741 18.69 6.84 42.28 1.31
698 751 7.636036 AGGTCTCTGTATACTGGAGTATAGT 57.364 40.000 18.69 0.00 42.28 2.12
700 753 7.292827 AGGTCTCTGTATACTGGAGTATAGTGA 59.707 40.741 18.69 7.34 42.28 3.41
702 755 8.152246 GTCTCTGTATACTGGAGTATAGTGAGT 58.848 40.741 21.05 0.00 42.28 3.41
748 802 1.377202 GCTGATCAAAGGCGGTCCA 60.377 57.895 0.00 0.00 33.74 4.02
919 978 0.675633 GGAAAGCAAAAGCAGAGCCA 59.324 50.000 0.00 0.00 0.00 4.75
935 994 1.451028 CCAAGCTCCAGCCTACAGC 60.451 63.158 0.00 0.00 43.38 4.40
936 995 1.451028 CAAGCTCCAGCCTACAGCC 60.451 63.158 0.00 0.00 45.47 4.85
937 996 1.614824 AAGCTCCAGCCTACAGCCT 60.615 57.895 0.00 0.00 45.47 4.58
954 1013 0.179062 CCTACAGCTAGCCAAGGCAG 60.179 60.000 12.13 9.64 44.88 4.85
992 1051 4.760047 CACGGGCCGGTGAAGAGG 62.760 72.222 33.57 9.54 40.38 3.69
994 1053 3.702048 CGGGCCGGTGAAGAGGAA 61.702 66.667 20.56 0.00 0.00 3.36
995 1054 2.754375 GGGCCGGTGAAGAGGAAA 59.246 61.111 1.90 0.00 0.00 3.13
1005 1064 4.142816 CGGTGAAGAGGAAACACAATGATC 60.143 45.833 0.00 0.00 36.42 2.92
1288 1347 2.047274 CGCACACCATCCCGAAGT 60.047 61.111 0.00 0.00 0.00 3.01
1696 1755 3.381335 GGGGTCATCTCCAAGGTTAGTA 58.619 50.000 0.00 0.00 0.00 1.82
1697 1756 3.974642 GGGGTCATCTCCAAGGTTAGTAT 59.025 47.826 0.00 0.00 0.00 2.12
1724 1785 7.119992 ACTGAACTACTGATCACTACTGTACTG 59.880 40.741 0.00 0.00 0.00 2.74
1731 1792 2.168496 TCACTACTGTACTGTGCCCTC 58.832 52.381 15.01 0.00 0.00 4.30
1738 1799 0.530744 GTACTGTGCCCTCGATGTGA 59.469 55.000 0.00 0.00 0.00 3.58
1740 1801 0.320771 ACTGTGCCCTCGATGTGAAC 60.321 55.000 0.00 0.00 0.00 3.18
1775 1836 2.370281 AGAATGATTGTCGAGCGTGT 57.630 45.000 0.00 0.00 0.00 4.49
1859 1925 5.457799 CGGTAAAATCTGACATGTAGTACGG 59.542 44.000 0.00 0.00 0.00 4.02
1893 1959 4.497006 GGCGTTCTATTTCGTACTGCTAGA 60.497 45.833 0.00 0.00 0.00 2.43
1921 1991 8.043113 AGACAAGAAAATCTCATGTATGTGCTA 58.957 33.333 0.00 0.00 36.13 3.49
1927 1997 3.732212 TCTCATGTATGTGCTACCATGC 58.268 45.455 0.00 0.00 0.00 4.06
1941 2015 3.559238 ACCATGCTTTAGCTGAAAACG 57.441 42.857 0.00 0.00 42.66 3.60
1966 2040 6.402658 GCTGATTCTGAGCTTTTGGTACTTAC 60.403 42.308 0.00 0.00 33.37 2.34
1973 2049 6.734137 TGAGCTTTTGGTACTTACAAACATG 58.266 36.000 0.00 0.00 37.53 3.21
2019 2095 7.703621 CACAATGACAGAAGACAAAAACAGATT 59.296 33.333 0.00 0.00 0.00 2.40
2108 2189 7.308229 CCTGTAAACAAAATGTCAGAAGAGAGG 60.308 40.741 0.00 0.00 0.00 3.69
2109 2190 6.486657 TGTAAACAAAATGTCAGAAGAGAGGG 59.513 38.462 0.00 0.00 0.00 4.30
2110 2191 4.713792 ACAAAATGTCAGAAGAGAGGGT 57.286 40.909 0.00 0.00 0.00 4.34
2111 2192 5.825593 ACAAAATGTCAGAAGAGAGGGTA 57.174 39.130 0.00 0.00 0.00 3.69
2112 2193 5.552178 ACAAAATGTCAGAAGAGAGGGTAC 58.448 41.667 0.00 0.00 0.00 3.34
2113 2194 5.071788 ACAAAATGTCAGAAGAGAGGGTACA 59.928 40.000 0.00 0.00 0.00 2.90
2114 2195 5.825593 AAATGTCAGAAGAGAGGGTACAA 57.174 39.130 0.00 0.00 0.00 2.41
2115 2196 5.825593 AATGTCAGAAGAGAGGGTACAAA 57.174 39.130 0.00 0.00 0.00 2.83
2116 2197 6.380079 AATGTCAGAAGAGAGGGTACAAAT 57.620 37.500 0.00 0.00 0.00 2.32
2117 2198 5.825593 TGTCAGAAGAGAGGGTACAAATT 57.174 39.130 0.00 0.00 0.00 1.82
2118 2199 5.551233 TGTCAGAAGAGAGGGTACAAATTG 58.449 41.667 0.00 0.00 0.00 2.32
2119 2200 5.306937 TGTCAGAAGAGAGGGTACAAATTGA 59.693 40.000 0.00 0.00 0.00 2.57
2120 2201 6.183361 TGTCAGAAGAGAGGGTACAAATTGAA 60.183 38.462 0.00 0.00 0.00 2.69
2121 2202 6.710744 GTCAGAAGAGAGGGTACAAATTGAAA 59.289 38.462 0.00 0.00 0.00 2.69
2122 2203 7.391833 GTCAGAAGAGAGGGTACAAATTGAAAT 59.608 37.037 0.00 0.00 0.00 2.17
2123 2204 7.944554 TCAGAAGAGAGGGTACAAATTGAAATT 59.055 33.333 0.00 0.00 0.00 1.82
2124 2205 9.231297 CAGAAGAGAGGGTACAAATTGAAATTA 57.769 33.333 0.00 0.00 0.00 1.40
2125 2206 9.807921 AGAAGAGAGGGTACAAATTGAAATTAA 57.192 29.630 0.00 0.00 0.00 1.40
2126 2207 9.841880 GAAGAGAGGGTACAAATTGAAATTAAC 57.158 33.333 0.00 0.00 0.00 2.01
2127 2208 9.588096 AAGAGAGGGTACAAATTGAAATTAACT 57.412 29.630 0.00 0.00 0.00 2.24
2128 2209 9.232473 AGAGAGGGTACAAATTGAAATTAACTC 57.768 33.333 0.00 1.12 0.00 3.01
2129 2210 9.232473 GAGAGGGTACAAATTGAAATTAACTCT 57.768 33.333 0.00 3.41 0.00 3.24
2244 2333 2.616510 CCTGTGAGAGTTGGAATGACCC 60.617 54.545 0.00 0.00 38.00 4.46
2249 2338 1.156736 GAGTTGGAATGACCCGTGTG 58.843 55.000 0.00 0.00 38.00 3.82
2411 2510 8.369424 ACAGGTAGTACATGTTGTTAATACACA 58.631 33.333 14.60 0.00 40.55 3.72
2475 2574 1.004185 GTCGCTATGAATGCAGTGCAG 60.004 52.381 24.20 9.66 43.65 4.41
2570 4294 2.093288 TCATCCTGAAGAGGTCACATGC 60.093 50.000 0.00 0.00 40.76 4.06
2618 4342 2.401583 TTCATCATGTCCAACTCCCG 57.598 50.000 0.00 0.00 0.00 5.14
2654 4378 6.656693 GGAATGATGGAAGATATACTGTTGGG 59.343 42.308 0.00 0.00 0.00 4.12
3177 4901 2.921538 CTTCTACGAGAGCACGGCCG 62.922 65.000 26.86 26.86 37.61 6.13
3237 4961 4.785512 AGAAGCTGCGCGACCTCG 62.786 66.667 12.10 0.00 43.27 4.63
3247 4971 3.367743 CGACCTCGACCCGGACAA 61.368 66.667 0.73 0.00 43.02 3.18
3698 5422 1.949257 CAGAACGGGGCTTGTGTTC 59.051 57.895 0.00 0.00 41.71 3.18
3793 5520 8.911918 ACAGAGATAGTACTATACCACTTCTG 57.088 38.462 15.42 19.08 0.00 3.02
3795 5522 9.344772 CAGAGATAGTACTATACCACTTCTGTT 57.655 37.037 15.42 0.00 0.00 3.16
3796 5523 9.563748 AGAGATAGTACTATACCACTTCTGTTC 57.436 37.037 15.42 0.00 0.00 3.18
3830 5557 9.710900 ATTTTTCTAAGTGGCCTGAATTTTAAG 57.289 29.630 3.32 0.00 0.00 1.85
3840 5567 5.230182 GCCTGAATTTTAAGTTTGGGTCAG 58.770 41.667 0.00 0.00 0.00 3.51
3852 5579 3.762407 TTGGGTCAGTCGATTTCTTGA 57.238 42.857 0.00 0.00 0.00 3.02
3868 5595 3.585862 TCTTGACCGTTGATTCTGCTAC 58.414 45.455 0.00 0.00 0.00 3.58
3880 5611 1.205064 CTGCTACGTTGTGCTGTGC 59.795 57.895 0.00 0.00 0.00 4.57
3906 5637 0.975556 TCGGGGCTGTTCTATGAGCA 60.976 55.000 0.00 0.00 36.90 4.26
3907 5638 0.107703 CGGGGCTGTTCTATGAGCAA 60.108 55.000 0.00 0.00 36.90 3.91
3939 5670 4.694037 GGGAGCAATTAACGAACAAGTACT 59.306 41.667 0.00 0.00 0.00 2.73
3940 5671 5.163884 GGGAGCAATTAACGAACAAGTACTC 60.164 44.000 0.00 0.00 0.00 2.59
3941 5672 5.444218 GGAGCAATTAACGAACAAGTACTCG 60.444 44.000 0.00 0.00 40.87 4.18
3976 5708 1.150081 GGTCATCTGGGATGGGCTG 59.850 63.158 7.54 0.00 0.00 4.85
4004 5737 3.485431 CTTGGCGTGCTCTCAGCG 61.485 66.667 0.00 0.00 46.26 5.18
4025 5758 1.153842 CGCCACATGTCGTGCTCTA 60.154 57.895 0.00 0.00 44.91 2.43
4026 5759 0.528466 CGCCACATGTCGTGCTCTAT 60.528 55.000 0.00 0.00 44.91 1.98
4029 5762 1.929169 CCACATGTCGTGCTCTATGTG 59.071 52.381 15.04 15.04 46.06 3.21
4032 5765 1.857217 CATGTCGTGCTCTATGTGCTC 59.143 52.381 0.00 0.00 0.00 4.26
4036 5769 0.249238 CGTGCTCTATGTGCTCCCTC 60.249 60.000 0.00 0.00 0.00 4.30
4037 5770 1.118838 GTGCTCTATGTGCTCCCTCT 58.881 55.000 0.00 0.00 0.00 3.69
4038 5771 1.484240 GTGCTCTATGTGCTCCCTCTT 59.516 52.381 0.00 0.00 0.00 2.85
4073 5810 0.640768 TTTTTCGCACGCGTTTTTGG 59.359 45.000 10.22 0.00 40.74 3.28
4085 5822 3.978217 CGCGTTTTTGGCTTTTTAGATGA 59.022 39.130 0.00 0.00 0.00 2.92
4121 5860 1.066454 GGTTTTCCACCGGTGTTTCTG 59.934 52.381 31.80 16.96 40.31 3.02
4130 5869 1.946768 CCGGTGTTTCTGAGCTTTTGA 59.053 47.619 0.00 0.00 0.00 2.69
4132 5871 3.181491 CCGGTGTTTCTGAGCTTTTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
4191 5930 3.793144 GCTTCCGCAAGAGGCACG 61.793 66.667 0.00 0.00 46.54 5.34
4210 5949 1.523758 GGCCATGCCTATAGGAAACG 58.476 55.000 23.61 7.74 46.69 3.60
4211 5950 1.071699 GGCCATGCCTATAGGAAACGA 59.928 52.381 23.61 0.32 46.69 3.85
4212 5951 2.486548 GGCCATGCCTATAGGAAACGAA 60.487 50.000 23.61 0.36 46.69 3.85
4213 5952 3.211045 GCCATGCCTATAGGAAACGAAA 58.789 45.455 23.61 0.00 37.39 3.46
4214 5953 3.630312 GCCATGCCTATAGGAAACGAAAA 59.370 43.478 23.61 0.00 37.39 2.29
4215 5954 4.097286 GCCATGCCTATAGGAAACGAAAAA 59.903 41.667 23.61 0.00 37.39 1.94
4242 5981 9.719355 AATGTTGTGTTTTCCTTTCTTTTTACT 57.281 25.926 0.00 0.00 0.00 2.24
4243 5982 9.719355 ATGTTGTGTTTTCCTTTCTTTTTACTT 57.281 25.926 0.00 0.00 0.00 2.24
4244 5983 9.549078 TGTTGTGTTTTCCTTTCTTTTTACTTT 57.451 25.926 0.00 0.00 0.00 2.66
4253 5992 8.374327 TCCTTTCTTTTTACTTTTACGAGAGG 57.626 34.615 0.00 0.00 0.00 3.69
4254 5993 7.041576 TCCTTTCTTTTTACTTTTACGAGAGGC 60.042 37.037 0.00 0.00 0.00 4.70
4255 5994 7.255001 CCTTTCTTTTTACTTTTACGAGAGGCA 60.255 37.037 0.00 0.00 0.00 4.75
4256 5995 6.535274 TCTTTTTACTTTTACGAGAGGCAC 57.465 37.500 0.00 0.00 0.00 5.01
4257 5996 4.977741 TTTTACTTTTACGAGAGGCACG 57.022 40.909 0.00 0.00 0.00 5.34
4258 5997 2.642139 TACTTTTACGAGAGGCACGG 57.358 50.000 0.00 0.00 34.93 4.94
4259 5998 0.963962 ACTTTTACGAGAGGCACGGA 59.036 50.000 0.00 0.00 34.93 4.69
4260 5999 1.549170 ACTTTTACGAGAGGCACGGAT 59.451 47.619 0.00 0.00 34.93 4.18
4261 6000 2.028385 ACTTTTACGAGAGGCACGGATT 60.028 45.455 0.00 0.00 34.93 3.01
4262 6001 2.754946 TTTACGAGAGGCACGGATTT 57.245 45.000 0.00 0.00 34.93 2.17
4263 6002 2.004583 TTACGAGAGGCACGGATTTG 57.995 50.000 0.00 0.00 34.93 2.32
4264 6003 0.459585 TACGAGAGGCACGGATTTGC 60.460 55.000 0.00 0.00 42.18 3.68
4265 6004 1.448540 CGAGAGGCACGGATTTGCT 60.449 57.895 0.00 0.00 42.56 3.91
4266 6005 1.021390 CGAGAGGCACGGATTTGCTT 61.021 55.000 0.00 0.00 42.56 3.91
4267 6006 0.729690 GAGAGGCACGGATTTGCTTC 59.270 55.000 0.28 0.28 46.31 3.86
4268 6007 0.678048 AGAGGCACGGATTTGCTTCC 60.678 55.000 4.54 0.00 46.96 3.46
4285 6024 4.664062 CGTGAGGGGCATGGATTT 57.336 55.556 0.00 0.00 0.00 2.17
4286 6025 3.798794 CGTGAGGGGCATGGATTTA 57.201 52.632 0.00 0.00 0.00 1.40
4287 6026 1.597742 CGTGAGGGGCATGGATTTAG 58.402 55.000 0.00 0.00 0.00 1.85
4288 6027 1.134098 CGTGAGGGGCATGGATTTAGT 60.134 52.381 0.00 0.00 0.00 2.24
4289 6028 2.683742 CGTGAGGGGCATGGATTTAGTT 60.684 50.000 0.00 0.00 0.00 2.24
4290 6029 2.952310 GTGAGGGGCATGGATTTAGTTC 59.048 50.000 0.00 0.00 0.00 3.01
4291 6030 2.091885 TGAGGGGCATGGATTTAGTTCC 60.092 50.000 0.00 0.00 36.24 3.62
4292 6031 1.133792 AGGGGCATGGATTTAGTTCCG 60.134 52.381 0.00 0.00 38.74 4.30
4293 6032 0.668535 GGGCATGGATTTAGTTCCGC 59.331 55.000 0.00 0.00 38.74 5.54
4294 6033 0.307760 GGCATGGATTTAGTTCCGCG 59.692 55.000 0.00 0.00 38.74 6.46
4295 6034 1.295792 GCATGGATTTAGTTCCGCGA 58.704 50.000 8.23 0.00 38.74 5.87
4296 6035 1.261619 GCATGGATTTAGTTCCGCGAG 59.738 52.381 8.23 0.00 38.74 5.03
4297 6036 2.821546 CATGGATTTAGTTCCGCGAGA 58.178 47.619 8.23 0.00 38.74 4.04
4298 6037 2.579207 TGGATTTAGTTCCGCGAGAG 57.421 50.000 8.23 0.00 38.74 3.20
4299 6038 1.136305 TGGATTTAGTTCCGCGAGAGG 59.864 52.381 8.23 0.00 38.74 3.69
4300 6039 1.209998 GATTTAGTTCCGCGAGAGGC 58.790 55.000 8.23 0.56 38.69 4.70
4301 6040 0.535335 ATTTAGTTCCGCGAGAGGCA 59.465 50.000 8.23 0.00 43.84 4.75
4302 6041 0.319083 TTTAGTTCCGCGAGAGGCAA 59.681 50.000 8.23 0.00 43.84 4.52
4303 6042 0.108804 TTAGTTCCGCGAGAGGCAAG 60.109 55.000 8.23 0.00 43.84 4.01
4304 6043 1.945354 TAGTTCCGCGAGAGGCAAGG 61.945 60.000 8.23 0.00 43.84 3.61
4305 6044 4.760047 TTCCGCGAGAGGCAAGGC 62.760 66.667 8.23 0.00 43.84 4.35
4320 6059 2.987125 GGCCGTGCCTCTAGGAAA 59.013 61.111 7.58 0.00 46.69 3.13
4321 6060 1.449778 GGCCGTGCCTCTAGGAAAC 60.450 63.158 7.58 0.00 46.69 2.78
4322 6061 1.295423 GCCGTGCCTCTAGGAAACA 59.705 57.895 0.00 0.00 37.39 2.83
4323 6062 0.321298 GCCGTGCCTCTAGGAAACAA 60.321 55.000 0.00 0.00 37.39 2.83
4324 6063 1.880646 GCCGTGCCTCTAGGAAACAAA 60.881 52.381 0.00 0.00 37.39 2.83
4325 6064 2.500229 CCGTGCCTCTAGGAAACAAAA 58.500 47.619 0.00 0.00 37.39 2.44
4326 6065 2.484264 CCGTGCCTCTAGGAAACAAAAG 59.516 50.000 0.00 0.00 37.39 2.27
4327 6066 3.399330 CGTGCCTCTAGGAAACAAAAGA 58.601 45.455 0.00 0.00 37.39 2.52
4328 6067 3.813166 CGTGCCTCTAGGAAACAAAAGAA 59.187 43.478 0.00 0.00 37.39 2.52
4329 6068 4.274950 CGTGCCTCTAGGAAACAAAAGAAA 59.725 41.667 0.00 0.00 37.39 2.52
4330 6069 5.048713 CGTGCCTCTAGGAAACAAAAGAAAT 60.049 40.000 0.00 0.00 37.39 2.17
4331 6070 6.152379 GTGCCTCTAGGAAACAAAAGAAATG 58.848 40.000 0.00 0.00 37.39 2.32
4332 6071 5.833131 TGCCTCTAGGAAACAAAAGAAATGT 59.167 36.000 0.00 0.00 37.39 2.71
4333 6072 6.152379 GCCTCTAGGAAACAAAAGAAATGTG 58.848 40.000 0.00 0.00 37.39 3.21
4334 6073 6.239036 GCCTCTAGGAAACAAAAGAAATGTGT 60.239 38.462 0.00 0.00 37.39 3.72
4335 6074 7.684428 GCCTCTAGGAAACAAAAGAAATGTGTT 60.684 37.037 0.00 0.00 37.39 3.32
4336 6075 8.197439 CCTCTAGGAAACAAAAGAAATGTGTTT 58.803 33.333 0.90 0.90 45.60 2.83
4344 6083 9.891828 AAACAAAAGAAATGTGTTTCCTTTTTC 57.108 25.926 0.00 0.00 43.82 2.29
4345 6084 8.846943 ACAAAAGAAATGTGTTTCCTTTTTCT 57.153 26.923 0.00 0.00 43.82 2.52
4346 6085 9.283768 ACAAAAGAAATGTGTTTCCTTTTTCTT 57.716 25.926 0.00 0.00 44.32 2.52
4365 6104 1.435577 TTTTTACTTCCGCGAGAGGC 58.564 50.000 8.23 0.00 38.69 4.70
4366 6105 0.319083 TTTTACTTCCGCGAGAGGCA 59.681 50.000 8.23 0.00 43.84 4.75
4367 6106 0.389426 TTTACTTCCGCGAGAGGCAC 60.389 55.000 8.23 0.00 43.84 5.01
4368 6107 2.537792 TTACTTCCGCGAGAGGCACG 62.538 60.000 8.23 0.00 43.84 5.34
4385 6124 2.987125 GGCCGTGCCTCTAGGAAA 59.013 61.111 7.58 0.00 46.69 3.13
4386 6125 1.298667 GGCCGTGCCTCTAGGAAAA 59.701 57.895 7.58 0.00 46.69 2.29
4387 6126 0.744771 GGCCGTGCCTCTAGGAAAAG 60.745 60.000 7.58 0.00 46.69 2.27
4388 6127 0.744771 GCCGTGCCTCTAGGAAAAGG 60.745 60.000 0.00 0.00 37.39 3.11
4389 6128 0.902531 CCGTGCCTCTAGGAAAAGGA 59.097 55.000 0.00 0.00 37.39 3.36
4390 6129 1.278127 CCGTGCCTCTAGGAAAAGGAA 59.722 52.381 0.00 0.00 37.39 3.36
4391 6130 2.290071 CCGTGCCTCTAGGAAAAGGAAA 60.290 50.000 0.00 0.00 37.39 3.13
4392 6131 3.003480 CGTGCCTCTAGGAAAAGGAAAG 58.997 50.000 0.00 0.00 37.39 2.62
4393 6132 3.348119 GTGCCTCTAGGAAAAGGAAAGG 58.652 50.000 0.00 0.00 37.39 3.11
4394 6133 3.009143 GTGCCTCTAGGAAAAGGAAAGGA 59.991 47.826 0.00 0.00 37.39 3.36
4395 6134 3.655777 TGCCTCTAGGAAAAGGAAAGGAA 59.344 43.478 0.00 0.00 37.39 3.36
4396 6135 4.105697 TGCCTCTAGGAAAAGGAAAGGAAA 59.894 41.667 0.00 0.00 37.39 3.13
4397 6136 4.459685 GCCTCTAGGAAAAGGAAAGGAAAC 59.540 45.833 0.00 0.00 37.39 2.78
4398 6137 5.631119 CCTCTAGGAAAAGGAAAGGAAACA 58.369 41.667 0.00 0.00 37.39 2.83
4399 6138 5.473846 CCTCTAGGAAAAGGAAAGGAAACAC 59.526 44.000 0.00 0.00 37.39 3.32
4400 6139 6.008696 TCTAGGAAAAGGAAAGGAAACACA 57.991 37.500 0.00 0.00 0.00 3.72
4401 6140 6.610830 TCTAGGAAAAGGAAAGGAAACACAT 58.389 36.000 0.00 0.00 0.00 3.21
4402 6141 7.066781 TCTAGGAAAAGGAAAGGAAACACATT 58.933 34.615 0.00 0.00 0.00 2.71
4403 6142 6.560003 AGGAAAAGGAAAGGAAACACATTT 57.440 33.333 0.00 0.00 35.15 2.32
4404 6143 6.957631 AGGAAAAGGAAAGGAAACACATTTT 58.042 32.000 0.00 0.00 32.54 1.82
4405 6144 7.402054 AGGAAAAGGAAAGGAAACACATTTTT 58.598 30.769 0.00 0.00 32.54 1.94
4423 6162 0.958822 TTTTTCCTTCCGCAAGAGGC 59.041 50.000 0.00 0.00 43.02 4.70
4424 6163 0.179004 TTTTCCTTCCGCAAGAGGCA 60.179 50.000 0.00 0.00 45.17 4.75
4425 6164 0.038166 TTTCCTTCCGCAAGAGGCAT 59.962 50.000 0.00 0.00 45.17 4.40
4426 6165 0.908910 TTCCTTCCGCAAGAGGCATA 59.091 50.000 0.00 0.00 45.17 3.14
4427 6166 0.908910 TCCTTCCGCAAGAGGCATAA 59.091 50.000 0.00 0.00 45.17 1.90
4428 6167 1.280710 TCCTTCCGCAAGAGGCATAAA 59.719 47.619 0.00 0.00 45.17 1.40
4429 6168 2.092429 TCCTTCCGCAAGAGGCATAAAT 60.092 45.455 0.00 0.00 45.17 1.40
4430 6169 2.689983 CCTTCCGCAAGAGGCATAAATT 59.310 45.455 0.00 0.00 45.17 1.82
4431 6170 3.131046 CCTTCCGCAAGAGGCATAAATTT 59.869 43.478 0.00 0.00 45.17 1.82
4432 6171 3.781079 TCCGCAAGAGGCATAAATTTG 57.219 42.857 0.00 0.00 45.17 2.32
4433 6172 3.088532 TCCGCAAGAGGCATAAATTTGT 58.911 40.909 0.00 0.00 45.17 2.83
4434 6173 3.509575 TCCGCAAGAGGCATAAATTTGTT 59.490 39.130 0.00 0.00 45.17 2.83
4435 6174 4.021544 TCCGCAAGAGGCATAAATTTGTTT 60.022 37.500 0.00 0.00 45.17 2.83
4436 6175 4.690280 CCGCAAGAGGCATAAATTTGTTTT 59.310 37.500 0.00 0.00 45.17 2.43
4437 6176 5.163963 CCGCAAGAGGCATAAATTTGTTTTC 60.164 40.000 0.00 0.00 45.17 2.29
4438 6177 5.404968 CGCAAGAGGCATAAATTTGTTTTCA 59.595 36.000 0.00 0.00 45.17 2.69
4439 6178 6.091169 CGCAAGAGGCATAAATTTGTTTTCAT 59.909 34.615 0.00 0.00 45.17 2.57
4440 6179 7.238571 GCAAGAGGCATAAATTTGTTTTCATG 58.761 34.615 0.00 0.00 43.97 3.07
4441 6180 7.118101 GCAAGAGGCATAAATTTGTTTTCATGA 59.882 33.333 0.00 0.00 43.97 3.07
4442 6181 8.653338 CAAGAGGCATAAATTTGTTTTCATGAG 58.347 33.333 0.00 0.00 0.00 2.90
4443 6182 8.125978 AGAGGCATAAATTTGTTTTCATGAGA 57.874 30.769 0.00 0.00 0.00 3.27
4444 6183 8.248945 AGAGGCATAAATTTGTTTTCATGAGAG 58.751 33.333 0.00 0.00 0.00 3.20
4445 6184 7.325694 AGGCATAAATTTGTTTTCATGAGAGG 58.674 34.615 0.00 0.00 0.00 3.69
4446 6185 6.036408 GGCATAAATTTGTTTTCATGAGAGGC 59.964 38.462 0.00 0.00 0.00 4.70
4447 6186 6.591062 GCATAAATTTGTTTTCATGAGAGGCA 59.409 34.615 0.00 0.00 0.00 4.75
4448 6187 7.279313 GCATAAATTTGTTTTCATGAGAGGCAT 59.721 33.333 0.00 0.00 37.85 4.40
4463 6202 2.020131 GCATGATTGTGCCTCTCGG 58.980 57.895 0.00 0.00 39.18 4.63
4464 6203 0.462581 GCATGATTGTGCCTCTCGGA 60.463 55.000 0.00 0.00 39.18 4.55
4465 6204 2.013563 GCATGATTGTGCCTCTCGGAA 61.014 52.381 0.00 0.00 39.18 4.30
4466 6205 2.358957 CATGATTGTGCCTCTCGGAAA 58.641 47.619 0.00 0.00 0.00 3.13
4467 6206 1.808411 TGATTGTGCCTCTCGGAAAC 58.192 50.000 0.00 0.00 0.00 2.78
4502 6241 2.217429 TTTTGACTTCCGCAAAAGGC 57.783 45.000 0.00 0.00 39.51 4.35
4503 6242 1.107114 TTTGACTTCCGCAAAAGGCA 58.893 45.000 0.00 0.00 42.56 4.75
4504 6243 0.383949 TTGACTTCCGCAAAAGGCAC 59.616 50.000 3.16 0.00 43.93 5.01
4505 6244 1.082104 GACTTCCGCAAAAGGCACG 60.082 57.895 0.00 0.00 45.17 5.34
4507 6246 3.896863 CTTCCGCAAAAGGCACGGC 62.897 63.158 0.00 0.00 46.49 5.68
4519 6258 3.883462 CACGGCCGTGCATCTTAA 58.117 55.556 42.21 0.00 39.39 1.85
4520 6259 2.167161 CACGGCCGTGCATCTTAAA 58.833 52.632 42.21 0.00 39.39 1.52
4521 6260 0.519519 CACGGCCGTGCATCTTAAAA 59.480 50.000 42.21 0.00 39.39 1.52
4522 6261 1.068885 CACGGCCGTGCATCTTAAAAA 60.069 47.619 42.21 0.00 39.39 1.94
4537 6276 3.157518 AAAAACCGCATTTCCCCCT 57.842 47.368 0.00 0.00 0.00 4.79
4538 6277 1.429930 AAAAACCGCATTTCCCCCTT 58.570 45.000 0.00 0.00 0.00 3.95
4539 6278 0.973632 AAAACCGCATTTCCCCCTTC 59.026 50.000 0.00 0.00 0.00 3.46
4540 6279 0.902984 AAACCGCATTTCCCCCTTCC 60.903 55.000 0.00 0.00 0.00 3.46
4541 6280 2.828549 CCGCATTTCCCCCTTCCG 60.829 66.667 0.00 0.00 0.00 4.30
4542 6281 3.518068 CGCATTTCCCCCTTCCGC 61.518 66.667 0.00 0.00 0.00 5.54
4543 6282 3.518068 GCATTTCCCCCTTCCGCG 61.518 66.667 0.00 0.00 0.00 6.46
4544 6283 2.270850 CATTTCCCCCTTCCGCGA 59.729 61.111 8.23 0.00 0.00 5.87
4545 6284 1.819632 CATTTCCCCCTTCCGCGAG 60.820 63.158 8.23 0.00 0.00 5.03
4546 6285 1.993391 ATTTCCCCCTTCCGCGAGA 60.993 57.895 8.23 0.00 0.00 4.04
4547 6286 1.972660 ATTTCCCCCTTCCGCGAGAG 61.973 60.000 8.23 4.45 0.00 3.20
4551 6290 2.184579 CCCTTCCGCGAGAGGAAC 59.815 66.667 23.78 0.00 44.66 3.62
4552 6291 2.202623 CCTTCCGCGAGAGGAACG 60.203 66.667 19.19 0.00 44.66 3.95
4553 6292 2.202623 CTTCCGCGAGAGGAACGG 60.203 66.667 8.23 0.00 44.66 4.44
4554 6293 3.701604 CTTCCGCGAGAGGAACGGG 62.702 68.421 8.23 0.00 44.66 5.28
4556 6295 4.065281 CCGCGAGAGGAACGGGTT 62.065 66.667 8.23 0.00 43.23 4.11
4557 6296 2.048503 CGCGAGAGGAACGGGTTT 60.049 61.111 0.00 0.00 38.51 3.27
4558 6297 1.213537 CGCGAGAGGAACGGGTTTA 59.786 57.895 0.00 0.00 38.51 2.01
4559 6298 1.074872 CGCGAGAGGAACGGGTTTAC 61.075 60.000 0.00 0.00 38.51 2.01
4560 6299 0.245813 GCGAGAGGAACGGGTTTACT 59.754 55.000 0.00 0.00 0.00 2.24
4561 6300 1.337541 GCGAGAGGAACGGGTTTACTT 60.338 52.381 0.00 0.00 0.00 2.24
4562 6301 2.603953 CGAGAGGAACGGGTTTACTTC 58.396 52.381 0.00 0.00 0.00 3.01
4563 6302 2.230750 CGAGAGGAACGGGTTTACTTCT 59.769 50.000 0.00 0.00 0.00 2.85
4564 6303 3.441572 CGAGAGGAACGGGTTTACTTCTA 59.558 47.826 0.00 0.00 0.00 2.10
4565 6304 4.438472 CGAGAGGAACGGGTTTACTTCTAG 60.438 50.000 0.00 0.00 0.00 2.43
4566 6305 4.414677 AGAGGAACGGGTTTACTTCTAGT 58.585 43.478 0.00 0.00 0.00 2.57
4567 6306 5.574188 AGAGGAACGGGTTTACTTCTAGTA 58.426 41.667 0.00 0.00 0.00 1.82
4568 6307 5.651576 AGAGGAACGGGTTTACTTCTAGTAG 59.348 44.000 0.00 0.00 31.47 2.57
4569 6308 5.574188 AGGAACGGGTTTACTTCTAGTAGA 58.426 41.667 3.04 0.00 31.47 2.59
4570 6309 5.651576 AGGAACGGGTTTACTTCTAGTAGAG 59.348 44.000 3.04 0.00 31.47 2.43
4571 6310 5.163571 GGAACGGGTTTACTTCTAGTAGAGG 60.164 48.000 7.71 7.71 31.47 3.69
4572 6311 3.698539 ACGGGTTTACTTCTAGTAGAGGC 59.301 47.826 9.11 0.00 31.47 4.70
4573 6312 3.698040 CGGGTTTACTTCTAGTAGAGGCA 59.302 47.826 9.11 0.00 31.47 4.75
4574 6313 4.439837 CGGGTTTACTTCTAGTAGAGGCAC 60.440 50.000 9.11 4.24 31.47 5.01
4575 6314 4.439837 GGGTTTACTTCTAGTAGAGGCACG 60.440 50.000 9.11 0.00 31.47 5.34
4576 6315 4.439837 GGTTTACTTCTAGTAGAGGCACGG 60.440 50.000 9.11 0.00 31.47 4.94
4577 6316 2.803030 ACTTCTAGTAGAGGCACGGA 57.197 50.000 9.11 0.00 0.00 4.69
4578 6317 3.300239 ACTTCTAGTAGAGGCACGGAT 57.700 47.619 9.11 0.00 0.00 4.18
4579 6318 3.633418 ACTTCTAGTAGAGGCACGGATT 58.367 45.455 9.11 0.00 0.00 3.01
4580 6319 4.024670 ACTTCTAGTAGAGGCACGGATTT 58.975 43.478 9.11 0.00 0.00 2.17
4581 6320 4.142138 ACTTCTAGTAGAGGCACGGATTTG 60.142 45.833 9.11 0.00 0.00 2.32
4582 6321 3.628008 TCTAGTAGAGGCACGGATTTGA 58.372 45.455 0.00 0.00 0.00 2.69
4583 6322 4.215908 TCTAGTAGAGGCACGGATTTGAT 58.784 43.478 0.00 0.00 0.00 2.57
4584 6323 3.914426 AGTAGAGGCACGGATTTGATT 57.086 42.857 0.00 0.00 0.00 2.57
4585 6324 3.798202 AGTAGAGGCACGGATTTGATTC 58.202 45.455 0.00 0.00 0.00 2.52
4586 6325 2.044123 AGAGGCACGGATTTGATTCC 57.956 50.000 0.00 0.00 0.00 3.01
4587 6326 1.025041 GAGGCACGGATTTGATTCCC 58.975 55.000 0.00 0.00 31.61 3.97
4588 6327 0.395724 AGGCACGGATTTGATTCCCC 60.396 55.000 0.00 0.00 31.61 4.81
4589 6328 0.682855 GGCACGGATTTGATTCCCCA 60.683 55.000 0.00 0.00 31.61 4.96
4590 6329 1.181786 GCACGGATTTGATTCCCCAA 58.818 50.000 0.00 0.00 31.61 4.12
4591 6330 1.134946 GCACGGATTTGATTCCCCAAG 59.865 52.381 0.00 0.00 31.61 3.61
4592 6331 2.722094 CACGGATTTGATTCCCCAAGA 58.278 47.619 0.00 0.00 31.61 3.02
4593 6332 2.684881 CACGGATTTGATTCCCCAAGAG 59.315 50.000 0.00 0.00 31.61 2.85
4594 6333 2.301346 CGGATTTGATTCCCCAAGAGG 58.699 52.381 0.00 0.00 31.61 3.69
4595 6334 2.034878 GGATTTGATTCCCCAAGAGGC 58.965 52.381 0.00 0.00 0.00 4.70
4596 6335 1.678101 GATTTGATTCCCCAAGAGGCG 59.322 52.381 0.00 0.00 0.00 5.52
4597 6336 0.965363 TTTGATTCCCCAAGAGGCGC 60.965 55.000 0.00 0.00 0.00 6.53
4598 6337 2.897350 GATTCCCCAAGAGGCGCG 60.897 66.667 0.00 0.00 0.00 6.86
4599 6338 4.489771 ATTCCCCAAGAGGCGCGG 62.490 66.667 8.83 0.00 0.00 6.46
4612 6351 3.041940 CGCGGTCGTGCCTCTTTT 61.042 61.111 0.00 0.00 34.25 2.27
4613 6352 1.735198 CGCGGTCGTGCCTCTTTTA 60.735 57.895 0.00 0.00 34.25 1.52
4614 6353 1.683790 CGCGGTCGTGCCTCTTTTAG 61.684 60.000 0.00 0.00 34.25 1.85
4615 6354 0.389426 GCGGTCGTGCCTCTTTTAGA 60.389 55.000 0.00 0.00 34.25 2.10
4616 6355 1.938016 GCGGTCGTGCCTCTTTTAGAA 60.938 52.381 0.00 0.00 34.25 2.10
4617 6356 2.409975 CGGTCGTGCCTCTTTTAGAAA 58.590 47.619 0.00 0.00 34.25 2.52
4618 6357 2.412089 CGGTCGTGCCTCTTTTAGAAAG 59.588 50.000 0.00 0.00 34.25 2.62
4619 6358 2.742589 GGTCGTGCCTCTTTTAGAAAGG 59.257 50.000 1.04 0.00 0.00 3.11
4620 6359 3.400255 GTCGTGCCTCTTTTAGAAAGGT 58.600 45.455 1.04 0.00 32.49 3.50
4621 6360 4.562143 GGTCGTGCCTCTTTTAGAAAGGTA 60.562 45.833 1.04 0.00 32.49 3.08
4622 6361 4.992951 GTCGTGCCTCTTTTAGAAAGGTAA 59.007 41.667 1.04 0.00 32.49 2.85
4623 6362 5.467735 GTCGTGCCTCTTTTAGAAAGGTAAA 59.532 40.000 1.04 0.00 32.49 2.01
4624 6363 6.017687 GTCGTGCCTCTTTTAGAAAGGTAAAA 60.018 38.462 1.04 0.00 32.29 1.52
4625 6364 6.543100 TCGTGCCTCTTTTAGAAAGGTAAAAA 59.457 34.615 1.04 0.00 32.74 1.94
4646 6385 4.718940 AAAAATGCTCCCGATTCGATTT 57.281 36.364 7.83 2.43 0.00 2.17
4647 6386 4.718940 AAAATGCTCCCGATTCGATTTT 57.281 36.364 7.83 8.36 0.00 1.82
4648 6387 4.718940 AAATGCTCCCGATTCGATTTTT 57.281 36.364 7.83 0.00 0.00 1.94
4667 6406 3.408288 TTTTGTCCGGTCTTTTTCGTG 57.592 42.857 0.00 0.00 0.00 4.35
4668 6407 2.312722 TTGTCCGGTCTTTTTCGTGA 57.687 45.000 0.00 0.00 0.00 4.35
4669 6408 2.312722 TGTCCGGTCTTTTTCGTGAA 57.687 45.000 0.00 0.00 0.00 3.18
4670 6409 2.630158 TGTCCGGTCTTTTTCGTGAAA 58.370 42.857 0.00 0.00 0.00 2.69
4671 6410 3.008330 TGTCCGGTCTTTTTCGTGAAAA 58.992 40.909 0.00 3.74 38.40 2.29
4682 6421 5.533533 TTTTCGTGAAAAGAAGTTCGTCA 57.466 34.783 3.74 0.33 35.32 4.35
4683 6422 5.533533 TTTCGTGAAAAGAAGTTCGTCAA 57.466 34.783 8.07 0.00 35.32 3.18
4684 6423 5.533533 TTCGTGAAAAGAAGTTCGTCAAA 57.466 34.783 8.07 0.25 29.01 2.69
4685 6424 5.533533 TCGTGAAAAGAAGTTCGTCAAAA 57.466 34.783 8.07 0.00 0.00 2.44
4686 6425 5.929278 TCGTGAAAAGAAGTTCGTCAAAAA 58.071 33.333 8.07 0.00 0.00 1.94
4687 6426 5.791480 TCGTGAAAAGAAGTTCGTCAAAAAC 59.209 36.000 8.07 0.00 0.00 2.43
4688 6427 5.793457 CGTGAAAAGAAGTTCGTCAAAAACT 59.207 36.000 8.07 0.00 38.59 2.66
4689 6428 6.957077 CGTGAAAAGAAGTTCGTCAAAAACTA 59.043 34.615 8.07 0.00 35.96 2.24
4690 6429 7.638683 CGTGAAAAGAAGTTCGTCAAAAACTAT 59.361 33.333 8.07 0.00 35.96 2.12
4691 6430 8.944927 GTGAAAAGAAGTTCGTCAAAAACTATC 58.055 33.333 8.07 0.00 35.96 2.08
4692 6431 8.670135 TGAAAAGAAGTTCGTCAAAAACTATCA 58.330 29.630 0.00 0.00 35.96 2.15
4693 6432 9.498307 GAAAAGAAGTTCGTCAAAAACTATCAA 57.502 29.630 0.00 0.00 35.96 2.57
4694 6433 8.836959 AAAGAAGTTCGTCAAAAACTATCAAC 57.163 30.769 0.00 0.00 35.96 3.18
4695 6434 7.548196 AGAAGTTCGTCAAAAACTATCAACA 57.452 32.000 0.00 0.00 35.96 3.33
4696 6435 8.154649 AGAAGTTCGTCAAAAACTATCAACAT 57.845 30.769 0.00 0.00 35.96 2.71
4697 6436 8.070171 AGAAGTTCGTCAAAAACTATCAACATG 58.930 33.333 0.00 0.00 35.96 3.21
4698 6437 6.668323 AGTTCGTCAAAAACTATCAACATGG 58.332 36.000 0.00 0.00 35.25 3.66
4699 6438 5.621197 TCGTCAAAAACTATCAACATGGG 57.379 39.130 0.00 0.00 0.00 4.00
4700 6439 5.309638 TCGTCAAAAACTATCAACATGGGA 58.690 37.500 0.00 0.00 0.00 4.37
4701 6440 5.943416 TCGTCAAAAACTATCAACATGGGAT 59.057 36.000 0.00 2.37 0.00 3.85
4702 6441 6.093495 TCGTCAAAAACTATCAACATGGGATC 59.907 38.462 5.52 0.00 0.00 3.36
4703 6442 6.094048 CGTCAAAAACTATCAACATGGGATCT 59.906 38.462 5.52 0.00 0.00 2.75
4704 6443 7.279981 CGTCAAAAACTATCAACATGGGATCTA 59.720 37.037 5.52 0.00 0.00 1.98
4705 6444 8.616076 GTCAAAAACTATCAACATGGGATCTAG 58.384 37.037 5.52 2.65 0.00 2.43
4706 6445 8.328758 TCAAAAACTATCAACATGGGATCTAGT 58.671 33.333 5.52 3.19 0.00 2.57
4707 6446 8.960591 CAAAAACTATCAACATGGGATCTAGTT 58.039 33.333 5.52 8.15 29.28 2.24
4708 6447 9.533831 AAAAACTATCAACATGGGATCTAGTTT 57.466 29.630 16.71 16.71 36.13 2.66
4709 6448 9.533831 AAAACTATCAACATGGGATCTAGTTTT 57.466 29.630 22.14 22.14 38.00 2.43
4712 6451 9.838339 ACTATCAACATGGGATCTAGTTTTAAG 57.162 33.333 5.52 0.00 0.00 1.85
4715 6454 8.964476 TCAACATGGGATCTAGTTTTAAGATC 57.036 34.615 0.00 4.81 45.74 2.75
4716 6455 8.772250 TCAACATGGGATCTAGTTTTAAGATCT 58.228 33.333 11.65 0.00 45.74 2.75
4717 6456 9.050601 CAACATGGGATCTAGTTTTAAGATCTC 57.949 37.037 11.65 9.01 46.81 2.75
4721 6460 6.144175 GGGATCTAGTTTTAAGATCTCGACG 58.856 44.000 11.65 0.00 45.74 5.12
4722 6461 5.626132 GGATCTAGTTTTAAGATCTCGACGC 59.374 44.000 11.65 0.00 45.74 5.19
4723 6462 4.585364 TCTAGTTTTAAGATCTCGACGCG 58.415 43.478 3.53 3.53 0.00 6.01
4724 6463 3.482722 AGTTTTAAGATCTCGACGCGA 57.517 42.857 15.93 0.00 0.00 5.87
4734 6473 2.733127 TCGACGCGAGGAATTCAAC 58.267 52.632 15.93 0.00 0.00 3.18
4735 6474 0.038983 TCGACGCGAGGAATTCAACA 60.039 50.000 15.93 0.00 0.00 3.33
4736 6475 0.366871 CGACGCGAGGAATTCAACAG 59.633 55.000 15.93 0.00 0.00 3.16
4737 6476 1.429463 GACGCGAGGAATTCAACAGT 58.571 50.000 15.93 0.31 0.00 3.55
4738 6477 1.126846 GACGCGAGGAATTCAACAGTG 59.873 52.381 15.93 4.84 0.00 3.66
4739 6478 1.270094 ACGCGAGGAATTCAACAGTGA 60.270 47.619 15.93 0.00 0.00 3.41
4741 6480 2.223144 CGCGAGGAATTCAACAGTGAAA 59.777 45.455 0.00 0.00 46.66 2.69
4742 6481 3.303725 CGCGAGGAATTCAACAGTGAAAA 60.304 43.478 0.00 0.00 46.66 2.29
4743 6482 3.975035 GCGAGGAATTCAACAGTGAAAAC 59.025 43.478 7.93 0.00 46.66 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
2 3 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
3 4 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
5 6 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
6 7 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
9 10 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
11 12 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
12 13 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
13 14 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
14 15 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
15 16 1.453524 GTATATGAGCGCTTGCGTCTG 59.546 52.381 13.26 0.00 45.69 3.51
16 17 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
17 18 1.487482 TGTATATGAGCGCTTGCGTC 58.513 50.000 13.26 12.36 45.69 5.19
18 19 1.794701 CATGTATATGAGCGCTTGCGT 59.205 47.619 13.26 3.24 45.69 5.24
19 20 1.463034 GCATGTATATGAGCGCTTGCG 60.463 52.381 13.26 10.90 38.02 4.85
20 21 1.532437 TGCATGTATATGAGCGCTTGC 59.468 47.619 13.26 15.75 36.36 4.01
21 22 2.545106 TGTGCATGTATATGAGCGCTTG 59.455 45.455 13.26 3.84 38.26 4.01
22 23 2.837498 TGTGCATGTATATGAGCGCTT 58.163 42.857 13.26 0.00 38.26 4.68
23 24 2.531522 TGTGCATGTATATGAGCGCT 57.468 45.000 11.27 11.27 38.26 5.92
24 25 3.679502 TGTATGTGCATGTATATGAGCGC 59.320 43.478 0.00 0.00 36.36 5.92
25 26 4.925646 AGTGTATGTGCATGTATATGAGCG 59.074 41.667 3.28 0.00 36.36 5.03
26 27 6.791887 AAGTGTATGTGCATGTATATGAGC 57.208 37.500 3.28 0.00 36.36 4.26
27 28 7.331934 GGGTAAGTGTATGTGCATGTATATGAG 59.668 40.741 3.28 0.00 36.36 2.90
28 29 7.158697 GGGTAAGTGTATGTGCATGTATATGA 58.841 38.462 3.28 0.00 36.36 2.15
29 30 6.371548 GGGGTAAGTGTATGTGCATGTATATG 59.628 42.308 3.29 0.00 37.36 1.78
30 31 6.272324 AGGGGTAAGTGTATGTGCATGTATAT 59.728 38.462 0.00 0.00 0.00 0.86
31 32 5.605069 AGGGGTAAGTGTATGTGCATGTATA 59.395 40.000 0.00 0.00 0.00 1.47
32 33 4.412199 AGGGGTAAGTGTATGTGCATGTAT 59.588 41.667 0.00 0.00 0.00 2.29
33 34 3.778075 AGGGGTAAGTGTATGTGCATGTA 59.222 43.478 0.00 0.00 0.00 2.29
34 35 2.576191 AGGGGTAAGTGTATGTGCATGT 59.424 45.455 0.00 0.00 0.00 3.21
35 36 3.281727 AGGGGTAAGTGTATGTGCATG 57.718 47.619 0.00 0.00 0.00 4.06
36 37 4.658435 TCATAGGGGTAAGTGTATGTGCAT 59.342 41.667 0.00 0.00 0.00 3.96
37 38 4.034410 TCATAGGGGTAAGTGTATGTGCA 58.966 43.478 0.00 0.00 0.00 4.57
38 39 4.682778 TCATAGGGGTAAGTGTATGTGC 57.317 45.455 0.00 0.00 0.00 4.57
39 40 5.815740 GTGTTCATAGGGGTAAGTGTATGTG 59.184 44.000 0.00 0.00 0.00 3.21
40 41 5.486063 TGTGTTCATAGGGGTAAGTGTATGT 59.514 40.000 0.00 0.00 0.00 2.29
41 42 5.815740 GTGTGTTCATAGGGGTAAGTGTATG 59.184 44.000 0.00 0.00 0.00 2.39
42 43 5.486063 TGTGTGTTCATAGGGGTAAGTGTAT 59.514 40.000 0.00 0.00 0.00 2.29
43 44 4.839550 TGTGTGTTCATAGGGGTAAGTGTA 59.160 41.667 0.00 0.00 0.00 2.90
44 45 3.649023 TGTGTGTTCATAGGGGTAAGTGT 59.351 43.478 0.00 0.00 0.00 3.55
45 46 4.000988 GTGTGTGTTCATAGGGGTAAGTG 58.999 47.826 0.00 0.00 0.00 3.16
46 47 3.306502 CGTGTGTGTTCATAGGGGTAAGT 60.307 47.826 0.00 0.00 0.00 2.24
47 48 3.259064 CGTGTGTGTTCATAGGGGTAAG 58.741 50.000 0.00 0.00 0.00 2.34
48 49 2.613474 GCGTGTGTGTTCATAGGGGTAA 60.613 50.000 0.00 0.00 0.00 2.85
49 50 1.066716 GCGTGTGTGTTCATAGGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
50 51 0.321298 GCGTGTGTGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
51 52 0.321210 TGCGTGTGTGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
52 53 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
53 54 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
54 55 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
55 56 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
56 57 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
57 58 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
58 59 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
59 60 0.107831 ATAGGGTGTGCGTGTGTGTT 59.892 50.000 0.00 0.00 0.00 3.32
60 61 0.320421 GATAGGGTGTGCGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
61 62 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
62 63 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
63 64 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
64 65 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
65 66 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
66 67 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
67 68 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
68 69 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
69 70 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
70 71 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
71 72 2.329267 TGTGCTCATAGGGATAGGGTG 58.671 52.381 0.00 0.00 0.00 4.61
72 73 2.795291 TGTGCTCATAGGGATAGGGT 57.205 50.000 0.00 0.00 0.00 4.34
73 74 2.503356 GGATGTGCTCATAGGGATAGGG 59.497 54.545 0.32 0.00 34.06 3.53
74 75 2.167281 CGGATGTGCTCATAGGGATAGG 59.833 54.545 0.32 0.00 34.06 2.57
75 76 3.092301 TCGGATGTGCTCATAGGGATAG 58.908 50.000 0.32 0.00 34.06 2.08
76 77 3.169512 TCGGATGTGCTCATAGGGATA 57.830 47.619 0.32 0.00 34.06 2.59
88 89 1.363744 GGCTCAGTCTTTCGGATGTG 58.636 55.000 0.00 0.00 0.00 3.21
91 92 1.517832 CCGGCTCAGTCTTTCGGAT 59.482 57.895 0.00 0.00 42.94 4.18
99 100 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
146 147 5.600484 ACCTTCCATTTTACATTCCAACACA 59.400 36.000 0.00 0.00 0.00 3.72
333 338 7.615757 GTGCAGGGCTATTAGGGATTTATTTAT 59.384 37.037 0.00 0.00 0.00 1.40
490 496 9.912634 TGGCTAACATTACTATTACGGTATTAC 57.087 33.333 0.00 0.00 0.00 1.89
573 579 5.529289 TCAGAGGGATTAGCCTTTCTAAGA 58.471 41.667 0.00 0.00 40.34 2.10
610 623 9.782028 CGATTTATACATTGCAATTTGTTATGC 57.218 29.630 9.83 0.00 42.86 3.14
626 639 9.884636 CATGGTTCCTATAATCCGATTTATACA 57.115 33.333 0.00 0.00 0.00 2.29
635 648 3.007940 TCAGCCATGGTTCCTATAATCCG 59.992 47.826 14.67 0.00 0.00 4.18
720 774 0.940833 TTTGATCAGCAAACGCGTCA 59.059 45.000 14.44 0.00 41.37 4.35
725 779 0.454957 CCGCCTTTGATCAGCAAACG 60.455 55.000 6.28 3.83 41.37 3.60
728 782 0.960364 GGACCGCCTTTGATCAGCAA 60.960 55.000 6.28 0.00 33.88 3.91
774 828 5.416947 GCCTTCTCCTTGTTCGAGTATAAA 58.583 41.667 0.00 0.00 0.00 1.40
795 849 2.823829 GATTCGTGGTGCATCGGCC 61.824 63.158 0.00 0.00 40.13 6.13
919 978 2.993853 GGCTGTAGGCTGGAGCTT 59.006 61.111 16.34 0.00 41.70 3.74
935 994 0.179062 CTGCCTTGGCTAGCTGTAGG 60.179 60.000 15.72 18.10 0.00 3.18
936 995 0.813210 GCTGCCTTGGCTAGCTGTAG 60.813 60.000 15.72 10.57 34.70 2.74
937 996 1.221840 GCTGCCTTGGCTAGCTGTA 59.778 57.895 15.72 0.00 34.70 2.74
975 1034 4.760047 CCTCTTCACCGGCCCGTG 62.760 72.222 17.14 17.14 34.93 4.94
977 1036 3.248446 TTTCCTCTTCACCGGCCCG 62.248 63.158 0.00 0.00 0.00 6.13
978 1037 1.674651 GTTTCCTCTTCACCGGCCC 60.675 63.158 0.00 0.00 0.00 5.80
979 1038 1.072505 TGTTTCCTCTTCACCGGCC 59.927 57.895 0.00 0.00 0.00 6.13
980 1039 0.534203 TGTGTTTCCTCTTCACCGGC 60.534 55.000 0.00 0.00 0.00 6.13
981 1040 1.961793 TTGTGTTTCCTCTTCACCGG 58.038 50.000 0.00 0.00 0.00 5.28
982 1041 3.138304 TCATTGTGTTTCCTCTTCACCG 58.862 45.455 0.00 0.00 0.00 4.94
983 1042 4.142816 CGATCATTGTGTTTCCTCTTCACC 60.143 45.833 0.00 0.00 0.00 4.02
984 1043 4.670221 GCGATCATTGTGTTTCCTCTTCAC 60.670 45.833 0.00 0.00 0.00 3.18
985 1044 3.436704 GCGATCATTGTGTTTCCTCTTCA 59.563 43.478 0.00 0.00 0.00 3.02
986 1045 3.181506 GGCGATCATTGTGTTTCCTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
987 1046 2.749621 GGCGATCATTGTGTTTCCTCTT 59.250 45.455 0.00 0.00 0.00 2.85
988 1047 2.359900 GGCGATCATTGTGTTTCCTCT 58.640 47.619 0.00 0.00 0.00 3.69
989 1048 1.062587 CGGCGATCATTGTGTTTCCTC 59.937 52.381 0.00 0.00 0.00 3.71
990 1049 1.086696 CGGCGATCATTGTGTTTCCT 58.913 50.000 0.00 0.00 0.00 3.36
991 1050 0.523335 GCGGCGATCATTGTGTTTCC 60.523 55.000 12.98 0.00 0.00 3.13
992 1051 0.447801 AGCGGCGATCATTGTGTTTC 59.552 50.000 12.98 0.00 0.00 2.78
993 1052 0.881118 AAGCGGCGATCATTGTGTTT 59.119 45.000 12.98 0.00 0.00 2.83
994 1053 0.881118 AAAGCGGCGATCATTGTGTT 59.119 45.000 12.98 0.00 0.00 3.32
995 1054 0.881118 AAAAGCGGCGATCATTGTGT 59.119 45.000 12.98 0.00 0.00 3.72
1005 1064 2.743928 AGCAGGAGAAAAGCGGCG 60.744 61.111 0.51 0.51 0.00 6.46
1467 1526 2.368011 GCTCACCCCCTCCCAGTAC 61.368 68.421 0.00 0.00 0.00 2.73
1548 1607 1.936658 CCGCACGACATGATCATGG 59.063 57.895 33.31 21.51 42.91 3.66
1696 1755 9.111613 GTACAGTAGTGATCAGTAGTTCAGTAT 57.888 37.037 14.19 1.38 33.94 2.12
1697 1756 8.319881 AGTACAGTAGTGATCAGTAGTTCAGTA 58.680 37.037 14.19 11.09 31.38 2.74
1724 1785 1.079503 GAAGTTCACATCGAGGGCAC 58.920 55.000 0.69 0.00 0.00 5.01
1731 1792 4.083802 GGTCCTTTTCTGAAGTTCACATCG 60.084 45.833 0.08 0.00 0.00 3.84
1738 1799 6.129179 TCATTCTTGGTCCTTTTCTGAAGTT 58.871 36.000 0.00 0.00 0.00 2.66
1740 1801 6.830873 ATCATTCTTGGTCCTTTTCTGAAG 57.169 37.500 0.00 0.00 0.00 3.02
1775 1836 2.930887 GCATGAAGTCTGAACTACGGCA 60.931 50.000 0.00 0.00 33.48 5.69
1859 1925 5.444218 CGAAATAGAACGCCAGAGTACAAAC 60.444 44.000 0.00 0.00 0.00 2.93
1893 1959 8.025445 GCACATACATGAGATTTTCTTGTCTTT 58.975 33.333 0.00 0.00 41.67 2.52
1921 1991 2.351738 GCGTTTTCAGCTAAAGCATGGT 60.352 45.455 4.54 0.00 45.16 3.55
1927 1997 5.084722 CAGAATCAGCGTTTTCAGCTAAAG 58.915 41.667 0.00 0.00 44.06 1.85
1941 2015 4.006319 AGTACCAAAAGCTCAGAATCAGC 58.994 43.478 0.00 0.00 37.12 4.26
1966 2040 4.707030 ATGCCAGTACATCACATGTTTG 57.293 40.909 0.00 0.00 41.63 2.93
1973 2049 5.842907 TGTGTATCTATGCCAGTACATCAC 58.157 41.667 0.00 0.00 30.65 3.06
2040 2121 7.557719 AGAGATTTTCCATCCGTTTTATCACAT 59.442 33.333 0.00 0.00 0.00 3.21
2057 2138 5.675684 TTGCCCCCATTTAAGAGATTTTC 57.324 39.130 0.00 0.00 0.00 2.29
2244 2333 1.131693 TGGACTAGTATGCGTCACACG 59.868 52.381 0.00 0.00 45.88 4.49
2249 2338 2.810650 CCACTTGGACTAGTATGCGTC 58.189 52.381 0.00 0.00 37.39 5.19
2282 2371 8.630278 TCAATTGCTAATCGAAGAGTTAGTAC 57.370 34.615 0.00 0.00 43.63 2.73
2475 2574 7.294676 ACATTGTTTTTCTGCTGAAAGTTTC 57.705 32.000 16.87 8.75 42.34 2.78
2570 4294 7.195646 TGAGTAAAACAAAACTTGCATCTGAG 58.804 34.615 0.00 0.00 0.00 3.35
2618 4342 3.483421 TCCATCATTCCATGCATCAGTC 58.517 45.455 0.00 0.00 0.00 3.51
2639 4363 1.488812 TGCGCCCCAACAGTATATCTT 59.511 47.619 4.18 0.00 0.00 2.40
2654 4378 4.030452 GTGACCTGCAGTTGCGCC 62.030 66.667 13.81 0.00 45.83 6.53
3018 4742 2.056906 AACAGCTGCCCGTCCTTTCT 62.057 55.000 15.27 0.00 0.00 2.52
3237 4961 2.677003 CGCACATGTTGTCCGGGTC 61.677 63.158 0.00 0.00 0.00 4.46
3266 4990 2.032071 ACCAGCAGGCCGTTGTAC 59.968 61.111 0.00 0.00 39.06 2.90
3386 5110 3.596066 CTCCCACACGTCCTGGCTG 62.596 68.421 3.54 0.00 0.00 4.85
3542 5266 2.113243 GGCTGTCGAACAGTCCCCTT 62.113 60.000 13.91 0.00 44.65 3.95
3543 5267 2.584391 GGCTGTCGAACAGTCCCCT 61.584 63.158 13.91 0.00 44.65 4.79
3698 5422 1.153086 GCATACCCTGGCCTCTGTG 60.153 63.158 3.32 0.00 0.00 3.66
3795 5522 9.832445 CAGGCCACTTAGAAAAATATACTTAGA 57.168 33.333 5.01 0.00 0.00 2.10
3796 5523 9.832445 TCAGGCCACTTAGAAAAATATACTTAG 57.168 33.333 5.01 0.00 0.00 2.18
3798 5525 9.700831 ATTCAGGCCACTTAGAAAAATATACTT 57.299 29.630 5.01 0.00 0.00 2.24
3799 5526 9.700831 AATTCAGGCCACTTAGAAAAATATACT 57.299 29.630 5.01 0.00 0.00 2.12
3816 5543 4.039852 TGACCCAAACTTAAAATTCAGGCC 59.960 41.667 0.00 0.00 0.00 5.19
3830 5557 3.813166 TCAAGAAATCGACTGACCCAAAC 59.187 43.478 0.00 0.00 0.00 2.93
3840 5567 4.389077 AGAATCAACGGTCAAGAAATCGAC 59.611 41.667 0.00 0.00 0.00 4.20
3852 5579 2.066262 CAACGTAGCAGAATCAACGGT 58.934 47.619 0.00 0.00 39.57 4.83
3887 5618 0.975556 TGCTCATAGAACAGCCCCGA 60.976 55.000 0.00 0.00 34.47 5.14
3915 5646 3.751518 ACTTGTTCGTTAATTGCTCCCT 58.248 40.909 0.00 0.00 0.00 4.20
3918 5649 5.118203 ACGAGTACTTGTTCGTTAATTGCTC 59.882 40.000 10.17 0.00 46.87 4.26
3955 5686 0.466922 GCCCATCCCAGATGACCTTG 60.467 60.000 6.15 0.00 0.00 3.61
3963 5695 2.068821 GCTCTCAGCCCATCCCAGA 61.069 63.158 0.00 0.00 34.48 3.86
4013 5746 1.202463 GGAGCACATAGAGCACGACAT 60.202 52.381 0.00 0.00 0.00 3.06
4015 5748 0.528684 GGGAGCACATAGAGCACGAC 60.529 60.000 0.00 0.00 0.00 4.34
4051 5784 1.337821 AAAACGCGTGCGAAAAACAA 58.662 40.000 22.32 0.00 42.83 2.83
4052 5785 1.057847 CAAAAACGCGTGCGAAAAACA 59.942 42.857 22.32 0.00 42.83 2.83
4053 5786 1.587847 CCAAAAACGCGTGCGAAAAAC 60.588 47.619 22.32 0.00 42.83 2.43
4059 5792 1.747686 AAAAGCCAAAAACGCGTGCG 61.748 50.000 14.98 13.39 46.03 5.34
4060 5793 0.371989 AAAAAGCCAAAAACGCGTGC 59.628 45.000 14.98 12.13 0.00 5.34
4063 5796 3.978217 TCATCTAAAAAGCCAAAAACGCG 59.022 39.130 3.53 3.53 0.00 6.01
4101 5838 1.066454 CAGAAACACCGGTGGAAAACC 59.934 52.381 36.47 18.92 46.60 3.27
4107 5846 0.535102 AAGCTCAGAAACACCGGTGG 60.535 55.000 36.47 19.50 34.19 4.61
4192 5931 2.543777 TCGTTTCCTATAGGCATGGC 57.456 50.000 14.50 12.14 34.44 4.40
4193 5932 5.828299 TTTTTCGTTTCCTATAGGCATGG 57.172 39.130 14.50 3.87 34.44 3.66
4216 5955 9.719355 AGTAAAAAGAAAGGAAAACACAACATT 57.281 25.926 0.00 0.00 0.00 2.71
4217 5956 9.719355 AAGTAAAAAGAAAGGAAAACACAACAT 57.281 25.926 0.00 0.00 0.00 2.71
4218 5957 9.549078 AAAGTAAAAAGAAAGGAAAACACAACA 57.451 25.926 0.00 0.00 0.00 3.33
4227 5966 8.833493 CCTCTCGTAAAAGTAAAAAGAAAGGAA 58.167 33.333 0.00 0.00 0.00 3.36
4228 5967 7.041576 GCCTCTCGTAAAAGTAAAAAGAAAGGA 60.042 37.037 0.00 0.00 0.00 3.36
4229 5968 7.076362 GCCTCTCGTAAAAGTAAAAAGAAAGG 58.924 38.462 0.00 0.00 0.00 3.11
4230 5969 7.586664 GTGCCTCTCGTAAAAGTAAAAAGAAAG 59.413 37.037 0.00 0.00 0.00 2.62
4231 5970 7.412063 GTGCCTCTCGTAAAAGTAAAAAGAAA 58.588 34.615 0.00 0.00 0.00 2.52
4232 5971 6.292488 CGTGCCTCTCGTAAAAGTAAAAAGAA 60.292 38.462 0.00 0.00 0.00 2.52
4233 5972 5.176223 CGTGCCTCTCGTAAAAGTAAAAAGA 59.824 40.000 0.00 0.00 0.00 2.52
4234 5973 5.371629 CGTGCCTCTCGTAAAAGTAAAAAG 58.628 41.667 0.00 0.00 0.00 2.27
4235 5974 4.211794 CCGTGCCTCTCGTAAAAGTAAAAA 59.788 41.667 0.00 0.00 0.00 1.94
4236 5975 3.742369 CCGTGCCTCTCGTAAAAGTAAAA 59.258 43.478 0.00 0.00 0.00 1.52
4237 5976 3.005684 TCCGTGCCTCTCGTAAAAGTAAA 59.994 43.478 0.00 0.00 0.00 2.01
4238 5977 2.557924 TCCGTGCCTCTCGTAAAAGTAA 59.442 45.455 0.00 0.00 0.00 2.24
4239 5978 2.161855 TCCGTGCCTCTCGTAAAAGTA 58.838 47.619 0.00 0.00 0.00 2.24
4240 5979 0.963962 TCCGTGCCTCTCGTAAAAGT 59.036 50.000 0.00 0.00 0.00 2.66
4241 5980 2.295253 ATCCGTGCCTCTCGTAAAAG 57.705 50.000 0.00 0.00 0.00 2.27
4242 5981 2.739913 CAAATCCGTGCCTCTCGTAAAA 59.260 45.455 0.00 0.00 0.00 1.52
4243 5982 2.343101 CAAATCCGTGCCTCTCGTAAA 58.657 47.619 0.00 0.00 0.00 2.01
4244 5983 2.004583 CAAATCCGTGCCTCTCGTAA 57.995 50.000 0.00 0.00 0.00 3.18
4245 5984 0.459585 GCAAATCCGTGCCTCTCGTA 60.460 55.000 0.00 0.00 38.66 3.43
4246 5985 1.741770 GCAAATCCGTGCCTCTCGT 60.742 57.895 0.00 0.00 38.66 4.18
4247 5986 1.021390 AAGCAAATCCGTGCCTCTCG 61.021 55.000 0.00 0.00 46.14 4.04
4248 5987 0.729690 GAAGCAAATCCGTGCCTCTC 59.270 55.000 0.00 0.00 46.14 3.20
4249 5988 0.678048 GGAAGCAAATCCGTGCCTCT 60.678 55.000 0.00 0.00 46.14 3.69
4250 5989 1.803289 GGAAGCAAATCCGTGCCTC 59.197 57.895 0.00 0.00 46.14 4.70
4251 5990 4.002797 GGAAGCAAATCCGTGCCT 57.997 55.556 0.00 0.00 46.14 4.75
4257 5996 1.032114 CCCCTCACGGAAGCAAATCC 61.032 60.000 0.00 0.00 36.05 3.01
4258 5997 1.657751 GCCCCTCACGGAAGCAAATC 61.658 60.000 0.00 0.00 31.81 2.17
4259 5998 1.678970 GCCCCTCACGGAAGCAAAT 60.679 57.895 0.00 0.00 31.81 2.32
4260 5999 2.282180 GCCCCTCACGGAAGCAAA 60.282 61.111 0.00 0.00 31.81 3.68
4261 6000 2.905996 ATGCCCCTCACGGAAGCAA 61.906 57.895 0.00 0.00 40.97 3.91
4262 6001 3.329889 ATGCCCCTCACGGAAGCA 61.330 61.111 0.00 0.00 41.56 3.91
4263 6002 2.825836 CATGCCCCTCACGGAAGC 60.826 66.667 0.00 0.00 0.00 3.86
4264 6003 1.987807 ATCCATGCCCCTCACGGAAG 61.988 60.000 0.00 0.00 40.86 3.46
4265 6004 1.570857 AATCCATGCCCCTCACGGAA 61.571 55.000 0.00 0.00 40.86 4.30
4266 6005 1.570857 AAATCCATGCCCCTCACGGA 61.571 55.000 0.00 0.00 41.83 4.69
4267 6006 0.182537 TAAATCCATGCCCCTCACGG 59.817 55.000 0.00 0.00 0.00 4.94
4268 6007 1.134098 ACTAAATCCATGCCCCTCACG 60.134 52.381 0.00 0.00 0.00 4.35
4269 6008 2.736670 ACTAAATCCATGCCCCTCAC 57.263 50.000 0.00 0.00 0.00 3.51
4270 6009 2.091885 GGAACTAAATCCATGCCCCTCA 60.092 50.000 0.00 0.00 39.42 3.86
4271 6010 2.587522 GGAACTAAATCCATGCCCCTC 58.412 52.381 0.00 0.00 39.42 4.30
4272 6011 1.133792 CGGAACTAAATCCATGCCCCT 60.134 52.381 0.00 0.00 39.61 4.79
4273 6012 1.318576 CGGAACTAAATCCATGCCCC 58.681 55.000 0.00 0.00 39.61 5.80
4274 6013 0.668535 GCGGAACTAAATCCATGCCC 59.331 55.000 0.00 0.00 39.61 5.36
4275 6014 0.307760 CGCGGAACTAAATCCATGCC 59.692 55.000 0.00 0.00 39.61 4.40
4276 6015 1.261619 CTCGCGGAACTAAATCCATGC 59.738 52.381 6.13 0.00 39.61 4.06
4277 6016 2.797156 CTCTCGCGGAACTAAATCCATG 59.203 50.000 6.13 0.00 39.61 3.66
4278 6017 2.224066 CCTCTCGCGGAACTAAATCCAT 60.224 50.000 6.13 0.00 39.61 3.41
4279 6018 1.136305 CCTCTCGCGGAACTAAATCCA 59.864 52.381 6.13 0.00 39.61 3.41
4280 6019 1.854227 CCTCTCGCGGAACTAAATCC 58.146 55.000 6.13 0.00 36.05 3.01
4281 6020 1.209998 GCCTCTCGCGGAACTAAATC 58.790 55.000 6.13 0.00 0.00 2.17
4282 6021 0.535335 TGCCTCTCGCGGAACTAAAT 59.465 50.000 6.13 0.00 42.08 1.40
4283 6022 0.319083 TTGCCTCTCGCGGAACTAAA 59.681 50.000 6.13 0.00 42.08 1.85
4284 6023 0.108804 CTTGCCTCTCGCGGAACTAA 60.109 55.000 6.13 0.00 42.08 2.24
4285 6024 1.511305 CTTGCCTCTCGCGGAACTA 59.489 57.895 6.13 0.00 42.08 2.24
4286 6025 2.262915 CTTGCCTCTCGCGGAACT 59.737 61.111 6.13 0.00 42.08 3.01
4287 6026 2.815647 CCTTGCCTCTCGCGGAAC 60.816 66.667 6.13 0.00 42.08 3.62
4288 6027 4.760047 GCCTTGCCTCTCGCGGAA 62.760 66.667 6.13 0.00 42.08 4.30
4304 6043 0.321298 TTGTTTCCTAGAGGCACGGC 60.321 55.000 0.00 0.00 34.44 5.68
4305 6044 2.178912 TTTGTTTCCTAGAGGCACGG 57.821 50.000 0.00 0.00 34.44 4.94
4306 6045 3.399330 TCTTTTGTTTCCTAGAGGCACG 58.601 45.455 0.00 0.00 34.44 5.34
4307 6046 5.767816 TTTCTTTTGTTTCCTAGAGGCAC 57.232 39.130 0.00 0.00 34.44 5.01
4308 6047 5.833131 ACATTTCTTTTGTTTCCTAGAGGCA 59.167 36.000 0.00 0.00 34.44 4.75
4309 6048 6.152379 CACATTTCTTTTGTTTCCTAGAGGC 58.848 40.000 0.00 0.00 34.44 4.70
4310 6049 7.277174 ACACATTTCTTTTGTTTCCTAGAGG 57.723 36.000 0.00 0.00 0.00 3.69
4346 6085 1.270412 TGCCTCTCGCGGAAGTAAAAA 60.270 47.619 6.13 0.00 42.08 1.94
4347 6086 0.319083 TGCCTCTCGCGGAAGTAAAA 59.681 50.000 6.13 0.00 42.08 1.52
4348 6087 0.389426 GTGCCTCTCGCGGAAGTAAA 60.389 55.000 6.13 0.00 42.08 2.01
4349 6088 1.214589 GTGCCTCTCGCGGAAGTAA 59.785 57.895 6.13 0.00 42.08 2.24
4350 6089 2.882876 GTGCCTCTCGCGGAAGTA 59.117 61.111 6.13 0.00 42.08 2.24
4351 6090 4.421479 CGTGCCTCTCGCGGAAGT 62.421 66.667 6.13 0.00 44.36 3.01
4369 6108 0.744771 CCTTTTCCTAGAGGCACGGC 60.745 60.000 0.00 0.00 34.44 5.68
4370 6109 0.902531 TCCTTTTCCTAGAGGCACGG 59.097 55.000 0.00 0.00 32.93 4.94
4371 6110 2.762535 TTCCTTTTCCTAGAGGCACG 57.237 50.000 0.00 0.00 32.93 5.34
4372 6111 3.009143 TCCTTTCCTTTTCCTAGAGGCAC 59.991 47.826 0.00 0.00 32.93 5.01
4373 6112 3.256704 TCCTTTCCTTTTCCTAGAGGCA 58.743 45.455 0.00 0.00 32.93 4.75
4374 6113 4.302559 TTCCTTTCCTTTTCCTAGAGGC 57.697 45.455 0.00 0.00 32.93 4.70
4375 6114 5.473846 GTGTTTCCTTTCCTTTTCCTAGAGG 59.526 44.000 0.00 0.00 0.00 3.69
4376 6115 6.062095 TGTGTTTCCTTTCCTTTTCCTAGAG 58.938 40.000 0.00 0.00 0.00 2.43
4377 6116 6.008696 TGTGTTTCCTTTCCTTTTCCTAGA 57.991 37.500 0.00 0.00 0.00 2.43
4378 6117 6.901081 ATGTGTTTCCTTTCCTTTTCCTAG 57.099 37.500 0.00 0.00 0.00 3.02
4379 6118 7.669089 AAATGTGTTTCCTTTCCTTTTCCTA 57.331 32.000 0.00 0.00 0.00 2.94
4380 6119 6.560003 AAATGTGTTTCCTTTCCTTTTCCT 57.440 33.333 0.00 0.00 0.00 3.36
4381 6120 7.624360 AAAAATGTGTTTCCTTTCCTTTTCC 57.376 32.000 0.00 0.00 0.00 3.13
4404 6143 0.958822 GCCTCTTGCGGAAGGAAAAA 59.041 50.000 17.16 0.00 42.23 1.94
4405 6144 0.179004 TGCCTCTTGCGGAAGGAAAA 60.179 50.000 17.16 0.00 45.60 2.29
4406 6145 0.038166 ATGCCTCTTGCGGAAGGAAA 59.962 50.000 17.16 1.00 45.60 3.13
4407 6146 0.908910 TATGCCTCTTGCGGAAGGAA 59.091 50.000 17.16 0.00 45.60 3.36
4408 6147 0.908910 TTATGCCTCTTGCGGAAGGA 59.091 50.000 17.16 2.93 45.60 3.36
4409 6148 1.750193 TTTATGCCTCTTGCGGAAGG 58.250 50.000 17.16 3.26 45.60 3.46
4410 6149 4.107622 CAAATTTATGCCTCTTGCGGAAG 58.892 43.478 10.87 10.87 45.60 3.46
4411 6150 3.509575 ACAAATTTATGCCTCTTGCGGAA 59.490 39.130 0.00 0.00 45.60 4.30
4412 6151 3.088532 ACAAATTTATGCCTCTTGCGGA 58.911 40.909 0.00 0.00 45.60 5.54
4413 6152 3.508744 ACAAATTTATGCCTCTTGCGG 57.491 42.857 0.00 0.00 45.60 5.69
4414 6153 5.404968 TGAAAACAAATTTATGCCTCTTGCG 59.595 36.000 0.00 0.00 45.60 4.85
4415 6154 6.783892 TGAAAACAAATTTATGCCTCTTGC 57.216 33.333 0.00 0.00 41.77 4.01
4416 6155 8.537049 TCATGAAAACAAATTTATGCCTCTTG 57.463 30.769 0.00 0.00 0.00 3.02
4417 6156 8.587608 TCTCATGAAAACAAATTTATGCCTCTT 58.412 29.630 0.00 0.00 0.00 2.85
4418 6157 8.125978 TCTCATGAAAACAAATTTATGCCTCT 57.874 30.769 0.00 0.00 0.00 3.69
4419 6158 7.490402 CCTCTCATGAAAACAAATTTATGCCTC 59.510 37.037 0.00 0.00 0.00 4.70
4420 6159 7.325694 CCTCTCATGAAAACAAATTTATGCCT 58.674 34.615 0.00 0.00 0.00 4.75
4421 6160 6.036408 GCCTCTCATGAAAACAAATTTATGCC 59.964 38.462 0.00 0.00 0.00 4.40
4422 6161 6.591062 TGCCTCTCATGAAAACAAATTTATGC 59.409 34.615 0.00 0.00 0.00 3.14
4423 6162 8.712285 ATGCCTCTCATGAAAACAAATTTATG 57.288 30.769 0.00 0.00 33.26 1.90
4482 6221 2.093973 TGCCTTTTGCGGAAGTCAAAAA 60.094 40.909 0.00 0.00 45.60 1.94
4483 6222 1.478510 TGCCTTTTGCGGAAGTCAAAA 59.521 42.857 0.00 0.00 45.60 2.44
4484 6223 1.107114 TGCCTTTTGCGGAAGTCAAA 58.893 45.000 0.00 0.00 45.60 2.69
4485 6224 0.383949 GTGCCTTTTGCGGAAGTCAA 59.616 50.000 0.00 0.00 45.60 3.18
4486 6225 1.781025 CGTGCCTTTTGCGGAAGTCA 61.781 55.000 0.00 0.00 45.60 3.41
4487 6226 1.082104 CGTGCCTTTTGCGGAAGTC 60.082 57.895 0.00 0.00 45.60 3.01
4488 6227 3.030652 CGTGCCTTTTGCGGAAGT 58.969 55.556 0.00 0.00 45.60 3.01
4503 6242 1.240256 TTTTTAAGATGCACGGCCGT 58.760 45.000 28.70 28.70 0.00 5.68
4519 6258 1.346395 GAAGGGGGAAATGCGGTTTTT 59.654 47.619 0.00 0.00 0.00 1.94
4520 6259 0.973632 GAAGGGGGAAATGCGGTTTT 59.026 50.000 0.00 0.00 0.00 2.43
4521 6260 0.902984 GGAAGGGGGAAATGCGGTTT 60.903 55.000 0.00 0.00 0.00 3.27
4522 6261 1.304962 GGAAGGGGGAAATGCGGTT 60.305 57.895 0.00 0.00 0.00 4.44
4523 6262 2.359011 GGAAGGGGGAAATGCGGT 59.641 61.111 0.00 0.00 0.00 5.68
4524 6263 2.828549 CGGAAGGGGGAAATGCGG 60.829 66.667 0.00 0.00 0.00 5.69
4525 6264 3.518068 GCGGAAGGGGGAAATGCG 61.518 66.667 0.00 0.00 0.00 4.73
4526 6265 3.518068 CGCGGAAGGGGGAAATGC 61.518 66.667 0.00 0.00 40.85 3.56
4527 6266 2.270850 TCGCGGAAGGGGGAAATG 59.729 61.111 6.13 0.00 45.20 2.32
4533 6272 3.075005 TTCCTCTCGCGGAAGGGG 61.075 66.667 22.20 16.00 45.20 4.79
4534 6273 2.184579 GTTCCTCTCGCGGAAGGG 59.815 66.667 22.20 13.05 43.37 3.95
4535 6274 2.202623 CGTTCCTCTCGCGGAAGG 60.203 66.667 18.24 18.24 43.37 3.46
4539 6278 2.216750 TAAACCCGTTCCTCTCGCGG 62.217 60.000 6.13 0.00 44.55 6.46
4540 6279 1.074872 GTAAACCCGTTCCTCTCGCG 61.075 60.000 0.00 0.00 0.00 5.87
4541 6280 0.245813 AGTAAACCCGTTCCTCTCGC 59.754 55.000 0.00 0.00 0.00 5.03
4542 6281 2.230750 AGAAGTAAACCCGTTCCTCTCG 59.769 50.000 0.00 0.00 0.00 4.04
4543 6282 3.957591 AGAAGTAAACCCGTTCCTCTC 57.042 47.619 0.00 0.00 0.00 3.20
4544 6283 4.414677 ACTAGAAGTAAACCCGTTCCTCT 58.585 43.478 0.00 0.00 0.00 3.69
4545 6284 4.797800 ACTAGAAGTAAACCCGTTCCTC 57.202 45.455 0.00 0.00 0.00 3.71
4546 6285 5.574188 TCTACTAGAAGTAAACCCGTTCCT 58.426 41.667 0.00 0.00 29.00 3.36
4547 6286 5.163571 CCTCTACTAGAAGTAAACCCGTTCC 60.164 48.000 0.00 0.00 29.00 3.62
4548 6287 5.678361 GCCTCTACTAGAAGTAAACCCGTTC 60.678 48.000 0.00 0.00 29.00 3.95
4549 6288 4.159321 GCCTCTACTAGAAGTAAACCCGTT 59.841 45.833 0.00 0.00 29.00 4.44
4550 6289 3.698539 GCCTCTACTAGAAGTAAACCCGT 59.301 47.826 0.00 0.00 29.00 5.28
4551 6290 3.698040 TGCCTCTACTAGAAGTAAACCCG 59.302 47.826 0.00 0.00 29.00 5.28
4552 6291 4.439837 CGTGCCTCTACTAGAAGTAAACCC 60.440 50.000 0.00 0.00 29.00 4.11
4553 6292 4.439837 CCGTGCCTCTACTAGAAGTAAACC 60.440 50.000 0.00 0.00 29.00 3.27
4554 6293 4.397417 TCCGTGCCTCTACTAGAAGTAAAC 59.603 45.833 0.00 0.00 29.00 2.01
4555 6294 4.592942 TCCGTGCCTCTACTAGAAGTAAA 58.407 43.478 0.00 0.00 29.00 2.01
4556 6295 4.226427 TCCGTGCCTCTACTAGAAGTAA 57.774 45.455 0.00 0.00 29.00 2.24
4557 6296 3.920231 TCCGTGCCTCTACTAGAAGTA 57.080 47.619 0.00 0.00 0.00 2.24
4558 6297 2.803030 TCCGTGCCTCTACTAGAAGT 57.197 50.000 0.00 0.00 0.00 3.01
4559 6298 4.098044 TCAAATCCGTGCCTCTACTAGAAG 59.902 45.833 0.00 0.00 0.00 2.85
4560 6299 4.021229 TCAAATCCGTGCCTCTACTAGAA 58.979 43.478 0.00 0.00 0.00 2.10
4561 6300 3.628008 TCAAATCCGTGCCTCTACTAGA 58.372 45.455 0.00 0.00 0.00 2.43
4562 6301 4.592485 ATCAAATCCGTGCCTCTACTAG 57.408 45.455 0.00 0.00 0.00 2.57
4563 6302 4.202223 GGAATCAAATCCGTGCCTCTACTA 60.202 45.833 0.00 0.00 0.00 1.82
4564 6303 3.432326 GGAATCAAATCCGTGCCTCTACT 60.432 47.826 0.00 0.00 0.00 2.57
4565 6304 2.872858 GGAATCAAATCCGTGCCTCTAC 59.127 50.000 0.00 0.00 0.00 2.59
4566 6305 2.158813 GGGAATCAAATCCGTGCCTCTA 60.159 50.000 0.00 0.00 40.62 2.43
4567 6306 1.408822 GGGAATCAAATCCGTGCCTCT 60.409 52.381 0.00 0.00 40.62 3.69
4568 6307 1.025041 GGGAATCAAATCCGTGCCTC 58.975 55.000 0.00 0.00 40.62 4.70
4569 6308 0.395724 GGGGAATCAAATCCGTGCCT 60.396 55.000 0.00 0.00 40.62 4.75
4570 6309 0.682855 TGGGGAATCAAATCCGTGCC 60.683 55.000 0.00 0.00 40.62 5.01
4571 6310 1.134946 CTTGGGGAATCAAATCCGTGC 59.865 52.381 0.00 0.00 40.62 5.34
4572 6311 2.684881 CTCTTGGGGAATCAAATCCGTG 59.315 50.000 0.00 0.00 40.62 4.94
4573 6312 2.357154 CCTCTTGGGGAATCAAATCCGT 60.357 50.000 0.00 0.00 40.62 4.69
4574 6313 2.301346 CCTCTTGGGGAATCAAATCCG 58.699 52.381 0.00 0.00 40.62 4.18
4575 6314 2.034878 GCCTCTTGGGGAATCAAATCC 58.965 52.381 0.00 0.00 38.86 3.01
4595 6334 1.683790 CTAAAAGAGGCACGACCGCG 61.684 60.000 0.00 0.00 44.30 6.46
4596 6335 0.389426 TCTAAAAGAGGCACGACCGC 60.389 55.000 0.00 0.00 46.52 5.68
4597 6336 2.074547 TTCTAAAAGAGGCACGACCG 57.925 50.000 0.00 0.00 46.52 4.79
4598 6337 2.742589 CCTTTCTAAAAGAGGCACGACC 59.257 50.000 1.06 0.00 39.61 4.79
4599 6338 3.400255 ACCTTTCTAAAAGAGGCACGAC 58.600 45.455 1.06 0.00 33.78 4.34
4600 6339 3.764237 ACCTTTCTAAAAGAGGCACGA 57.236 42.857 1.06 0.00 33.78 4.35
4601 6340 5.934935 TTTACCTTTCTAAAAGAGGCACG 57.065 39.130 1.06 0.00 33.78 5.34
4625 6364 4.718940 AAATCGAATCGGGAGCATTTTT 57.281 36.364 1.76 0.00 0.00 1.94
4626 6365 4.718940 AAAATCGAATCGGGAGCATTTT 57.281 36.364 1.76 4.61 0.00 1.82
4627 6366 4.718940 AAAAATCGAATCGGGAGCATTT 57.281 36.364 1.76 0.00 0.00 2.32
4646 6385 3.439476 TCACGAAAAAGACCGGACAAAAA 59.561 39.130 9.46 0.00 0.00 1.94
4647 6386 3.008330 TCACGAAAAAGACCGGACAAAA 58.992 40.909 9.46 0.00 0.00 2.44
4648 6387 2.630158 TCACGAAAAAGACCGGACAAA 58.370 42.857 9.46 0.00 0.00 2.83
4649 6388 2.312722 TCACGAAAAAGACCGGACAA 57.687 45.000 9.46 0.00 0.00 3.18
4650 6389 2.312722 TTCACGAAAAAGACCGGACA 57.687 45.000 9.46 0.00 0.00 4.02
4651 6390 3.678915 TTTTCACGAAAAAGACCGGAC 57.321 42.857 9.46 0.10 37.35 4.79
4659 6398 5.929278 TGACGAACTTCTTTTCACGAAAAA 58.071 33.333 6.43 0.00 39.49 1.94
4660 6399 5.533533 TGACGAACTTCTTTTCACGAAAA 57.466 34.783 4.95 4.95 37.90 2.29
4661 6400 5.533533 TTGACGAACTTCTTTTCACGAAA 57.466 34.783 0.00 0.00 0.00 3.46
4662 6401 5.533533 TTTGACGAACTTCTTTTCACGAA 57.466 34.783 0.00 0.00 0.00 3.85
4663 6402 5.533533 TTTTGACGAACTTCTTTTCACGA 57.466 34.783 0.00 0.00 0.00 4.35
4664 6403 5.793457 AGTTTTTGACGAACTTCTTTTCACG 59.207 36.000 0.00 0.00 33.76 4.35
4665 6404 8.836959 ATAGTTTTTGACGAACTTCTTTTCAC 57.163 30.769 0.00 0.00 38.28 3.18
4666 6405 8.670135 TGATAGTTTTTGACGAACTTCTTTTCA 58.330 29.630 0.00 0.00 38.28 2.69
4667 6406 9.498307 TTGATAGTTTTTGACGAACTTCTTTTC 57.502 29.630 0.00 0.00 38.28 2.29
4668 6407 9.285770 GTTGATAGTTTTTGACGAACTTCTTTT 57.714 29.630 0.00 0.00 38.28 2.27
4669 6408 8.455682 TGTTGATAGTTTTTGACGAACTTCTTT 58.544 29.630 0.00 0.00 38.28 2.52
4670 6409 7.981142 TGTTGATAGTTTTTGACGAACTTCTT 58.019 30.769 0.00 0.00 38.28 2.52
4671 6410 7.548196 TGTTGATAGTTTTTGACGAACTTCT 57.452 32.000 0.00 0.00 38.28 2.85
4672 6411 7.323656 CCATGTTGATAGTTTTTGACGAACTTC 59.676 37.037 0.00 0.00 38.28 3.01
4673 6412 7.138736 CCATGTTGATAGTTTTTGACGAACTT 58.861 34.615 0.00 0.00 38.28 2.66
4674 6413 6.293955 CCCATGTTGATAGTTTTTGACGAACT 60.294 38.462 0.00 0.00 40.28 3.01
4675 6414 5.856455 CCCATGTTGATAGTTTTTGACGAAC 59.144 40.000 0.00 0.00 0.00 3.95
4676 6415 5.765677 TCCCATGTTGATAGTTTTTGACGAA 59.234 36.000 0.00 0.00 0.00 3.85
4677 6416 5.309638 TCCCATGTTGATAGTTTTTGACGA 58.690 37.500 0.00 0.00 0.00 4.20
4678 6417 5.621197 TCCCATGTTGATAGTTTTTGACG 57.379 39.130 0.00 0.00 0.00 4.35
4679 6418 7.396540 AGATCCCATGTTGATAGTTTTTGAC 57.603 36.000 0.00 0.00 0.00 3.18
4680 6419 8.328758 ACTAGATCCCATGTTGATAGTTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
4681 6420 8.511604 ACTAGATCCCATGTTGATAGTTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
4682 6421 9.533831 AAACTAGATCCCATGTTGATAGTTTTT 57.466 29.630 12.87 3.65 31.63 1.94
4683 6422 9.533831 AAAACTAGATCCCATGTTGATAGTTTT 57.466 29.630 18.80 18.80 36.79 2.43
4686 6425 9.838339 CTTAAAACTAGATCCCATGTTGATAGT 57.162 33.333 0.00 0.00 0.00 2.12
4689 6428 9.566432 GATCTTAAAACTAGATCCCATGTTGAT 57.434 33.333 0.00 0.00 41.30 2.57
4690 6429 8.772250 AGATCTTAAAACTAGATCCCATGTTGA 58.228 33.333 0.00 0.00 45.92 3.18
4691 6430 8.970859 AGATCTTAAAACTAGATCCCATGTTG 57.029 34.615 0.00 0.00 45.92 3.33
4692 6431 7.928706 CGAGATCTTAAAACTAGATCCCATGTT 59.071 37.037 0.00 0.00 45.92 2.71
4693 6432 7.287927 TCGAGATCTTAAAACTAGATCCCATGT 59.712 37.037 0.00 0.00 45.92 3.21
4694 6433 7.596995 GTCGAGATCTTAAAACTAGATCCCATG 59.403 40.741 0.00 0.00 45.92 3.66
4695 6434 7.522399 CGTCGAGATCTTAAAACTAGATCCCAT 60.522 40.741 0.00 0.00 45.92 4.00
4696 6435 6.238676 CGTCGAGATCTTAAAACTAGATCCCA 60.239 42.308 0.00 0.00 45.92 4.37
4697 6436 6.144175 CGTCGAGATCTTAAAACTAGATCCC 58.856 44.000 0.00 0.00 45.92 3.85
4698 6437 5.626132 GCGTCGAGATCTTAAAACTAGATCC 59.374 44.000 0.00 1.88 45.92 3.36
4699 6438 5.337512 CGCGTCGAGATCTTAAAACTAGATC 59.662 44.000 0.00 0.00 45.39 2.75
4700 6439 5.007430 TCGCGTCGAGATCTTAAAACTAGAT 59.993 40.000 5.77 0.00 35.12 1.98
4701 6440 4.330894 TCGCGTCGAGATCTTAAAACTAGA 59.669 41.667 5.77 0.00 0.00 2.43
4702 6441 4.585364 TCGCGTCGAGATCTTAAAACTAG 58.415 43.478 5.77 0.00 0.00 2.57
4703 6442 4.604843 TCGCGTCGAGATCTTAAAACTA 57.395 40.909 5.77 0.00 0.00 2.24
4704 6443 3.482722 TCGCGTCGAGATCTTAAAACT 57.517 42.857 5.77 0.00 0.00 2.66
4716 6455 0.038983 TGTTGAATTCCTCGCGTCGA 60.039 50.000 5.77 0.00 0.00 4.20
4717 6456 0.366871 CTGTTGAATTCCTCGCGTCG 59.633 55.000 5.77 0.00 0.00 5.12
4718 6457 1.126846 CACTGTTGAATTCCTCGCGTC 59.873 52.381 5.77 0.00 0.00 5.19
4719 6458 1.148310 CACTGTTGAATTCCTCGCGT 58.852 50.000 5.77 0.00 0.00 6.01
4720 6459 1.428448 TCACTGTTGAATTCCTCGCG 58.572 50.000 0.00 0.00 0.00 5.87
4721 6460 3.896648 TTTCACTGTTGAATTCCTCGC 57.103 42.857 2.27 0.00 41.50 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.