Multiple sequence alignment - TraesCS6D01G136900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G136900 chr6D 100.000 3761 0 0 1 3761 105560273 105556513 0.000000e+00 6946.0
1 TraesCS6D01G136900 chr6D 93.692 428 18 7 3044 3467 435350566 435350144 1.910000e-177 632.0
2 TraesCS6D01G136900 chr6D 92.974 427 25 4 3042 3467 268069216 268069638 5.340000e-173 617.0
3 TraesCS6D01G136900 chr6A 94.085 3077 89 38 1 3004 127614127 127611071 0.000000e+00 4588.0
4 TraesCS6D01G136900 chr6A 94.175 103 4 1 3661 3761 127610590 127610488 5.030000e-34 156.0
5 TraesCS6D01G136900 chr6A 98.851 87 1 0 3561 3647 127610660 127610574 5.030000e-34 156.0
6 TraesCS6D01G136900 chr6A 88.750 80 4 1 3474 3548 127610995 127610916 4.000000e-15 93.5
7 TraesCS6D01G136900 chr6A 97.297 37 0 1 3006 3041 127611027 127610991 1.130000e-05 62.1
8 TraesCS6D01G136900 chr6B 93.473 2911 109 41 182 3041 192094275 192097155 0.000000e+00 4248.0
9 TraesCS6D01G136900 chr6B 97.159 176 5 0 1 176 192093915 192094090 7.900000e-77 298.0
10 TraesCS6D01G136900 chr6B 98.000 150 2 1 3468 3617 192097147 192097295 3.730000e-65 259.0
11 TraesCS6D01G136900 chr6B 100.000 37 0 0 3725 3761 192097291 192097327 6.740000e-08 69.4
12 TraesCS6D01G136900 chr5A 97.203 429 9 3 3041 3469 227141164 227141589 0.000000e+00 723.0
13 TraesCS6D01G136900 chr5A 92.272 427 30 2 3041 3467 522102792 522103215 1.490000e-168 603.0
14 TraesCS6D01G136900 chr3D 94.393 428 22 2 3042 3468 33352415 33351989 0.000000e+00 656.0
15 TraesCS6D01G136900 chr3D 90.385 52 3 2 3666 3715 24048380 24048329 2.420000e-07 67.6
16 TraesCS6D01G136900 chr3D 90.385 52 3 2 3666 3715 24059737 24059788 2.420000e-07 67.6
17 TraesCS6D01G136900 chr7A 93.925 428 24 1 3041 3468 579171166 579171591 0.000000e+00 645.0
18 TraesCS6D01G136900 chr2D 92.958 426 28 2 3042 3467 641973604 641973181 1.480000e-173 619.0
19 TraesCS6D01G136900 chr5D 92.506 427 31 1 3041 3467 389527576 389527151 8.930000e-171 610.0
20 TraesCS6D01G136900 chr7D 92.671 423 26 5 3042 3463 574863870 574864288 4.160000e-169 604.0
21 TraesCS6D01G136900 chr7B 92.683 82 6 0 1204 1285 681857139 681857058 6.600000e-23 119.0
22 TraesCS6D01G136900 chr3B 90.385 52 3 2 3666 3715 41255662 41255713 2.420000e-07 67.6
23 TraesCS6D01G136900 chr3A 90.385 52 3 2 3666 3715 33423063 33423012 2.420000e-07 67.6
24 TraesCS6D01G136900 chr3A 88.462 52 4 2 3666 3715 193598792 193598741 1.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G136900 chr6D 105556513 105560273 3760 True 6946.00 6946 100.0000 1 3761 1 chr6D.!!$R1 3760
1 TraesCS6D01G136900 chr6A 127610488 127614127 3639 True 1011.12 4588 94.6316 1 3761 5 chr6A.!!$R1 3760
2 TraesCS6D01G136900 chr6B 192093915 192097327 3412 False 1218.60 4248 97.1580 1 3761 4 chr6B.!!$F1 3760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 954 1.134560 GCTAGTCACTAGTGGGAACCG 59.865 57.143 22.48 8.85 42.55 4.44 F
1484 1769 1.457823 TTGTCCGGCTACACGACACT 61.458 55.000 0.00 0.00 35.47 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1956 2.286301 GCTGCTTCTTCTTCATCATCGC 60.286 50.0 0.0 0.0 0.0 4.58 R
3452 3800 0.041090 AATTGGGAGGCGGATTTGGT 59.959 50.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.965172 CAATTGCTTTTCACAGAATATATGCTC 58.035 33.333 0.00 0.00 0.00 4.26
191 374 8.145122 TCTCACGGTATATATTACATTGTTGCA 58.855 33.333 0.00 0.00 0.00 4.08
202 385 2.884639 ACATTGTTGCAGTGTAGGTTCC 59.115 45.455 0.00 0.00 32.72 3.62
203 386 3.149196 CATTGTTGCAGTGTAGGTTCCT 58.851 45.455 0.00 0.00 0.00 3.36
204 387 4.202419 ACATTGTTGCAGTGTAGGTTCCTA 60.202 41.667 0.00 0.00 32.72 2.94
205 388 3.678056 TGTTGCAGTGTAGGTTCCTAG 57.322 47.619 0.00 0.00 0.00 3.02
237 420 4.700213 TGGCTTTTAACTCTAGGCAACATC 59.300 41.667 0.00 0.00 40.87 3.06
256 440 6.686484 ACATCATACATAGTTCCTGGCATA 57.314 37.500 0.00 0.00 0.00 3.14
299 486 7.982761 TGGGTAGTAAATTGTTCATTACGTT 57.017 32.000 0.00 0.00 37.16 3.99
399 586 4.151335 GTCGAATTGCAGATATGGTGCTAG 59.849 45.833 7.89 0.00 41.78 3.42
463 680 9.158233 CAATTTCAGAAAACAATTCCATGCTAT 57.842 29.630 0.00 0.00 0.00 2.97
509 726 3.159472 AGCATGAATGGAAGTGCTTTCA 58.841 40.909 0.00 4.09 44.92 2.69
592 813 2.638855 AGATGCATCTTCATCCTCTCCC 59.361 50.000 23.75 0.00 42.84 4.30
597 818 3.837146 GCATCTTCATCCTCTCCCTCATA 59.163 47.826 0.00 0.00 0.00 2.15
599 820 4.542906 TCTTCATCCTCTCCCTCATACA 57.457 45.455 0.00 0.00 0.00 2.29
600 821 4.478203 TCTTCATCCTCTCCCTCATACAG 58.522 47.826 0.00 0.00 0.00 2.74
602 823 5.134509 TCTTCATCCTCTCCCTCATACAGTA 59.865 44.000 0.00 0.00 0.00 2.74
603 824 5.607168 TCATCCTCTCCCTCATACAGTAT 57.393 43.478 0.00 0.00 0.00 2.12
604 825 5.328565 TCATCCTCTCCCTCATACAGTATG 58.671 45.833 13.75 13.75 46.00 2.39
702 949 4.207955 TGATACTGCTAGTCACTAGTGGG 58.792 47.826 22.48 11.34 36.53 4.61
707 954 1.134560 GCTAGTCACTAGTGGGAACCG 59.865 57.143 22.48 8.85 42.55 4.44
867 1121 9.403110 CTAACCAAGATGCATGATTATTTTAGC 57.597 33.333 2.46 0.00 0.00 3.09
1069 1329 3.202906 GCTACAGTCTCACAAAACCACA 58.797 45.455 0.00 0.00 0.00 4.17
1141 1403 4.754114 GCTTGAGAGAGAGAGAGAGAGATC 59.246 50.000 0.00 0.00 0.00 2.75
1144 1406 4.405680 TGAGAGAGAGAGAGAGAGATCGTT 59.594 45.833 0.00 0.00 0.00 3.85
1145 1407 4.697514 AGAGAGAGAGAGAGAGATCGTTG 58.302 47.826 0.00 0.00 0.00 4.10
1146 1408 4.405680 AGAGAGAGAGAGAGAGATCGTTGA 59.594 45.833 0.00 0.00 0.00 3.18
1147 1409 5.070981 AGAGAGAGAGAGAGAGATCGTTGAT 59.929 44.000 0.00 0.00 0.00 2.57
1427 1712 2.545952 CCGGACTATGTCATGCTGGTAC 60.546 54.545 0.00 0.00 33.68 3.34
1484 1769 1.457823 TTGTCCGGCTACACGACACT 61.458 55.000 0.00 0.00 35.47 3.55
1507 1792 3.181488 CCTTTGACAGTGATGTTGTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
1558 1843 3.008594 CACACATCAGGGTGGGTTAACTA 59.991 47.826 5.42 0.00 43.08 2.24
1755 2042 2.292292 CCGTCCCACAGGTAAACAAAAG 59.708 50.000 0.00 0.00 0.00 2.27
1783 2070 2.892784 TTGTACGACATGACACACCA 57.107 45.000 0.00 0.00 0.00 4.17
2273 2566 2.898738 CTGCTCAGCGTCTGGGAT 59.101 61.111 10.40 0.00 32.95 3.85
2731 3024 2.637383 GGGAGTTCTGACGCCGACT 61.637 63.158 0.00 0.00 45.68 4.18
3060 3408 7.439204 TTTTTCGAAAATACAAAGGTGAACG 57.561 32.000 23.05 0.00 0.00 3.95
3061 3409 5.738118 TTCGAAAATACAAAGGTGAACGT 57.262 34.783 0.00 0.00 0.00 3.99
3062 3410 5.085636 TCGAAAATACAAAGGTGAACGTG 57.914 39.130 0.00 0.00 0.00 4.49
3063 3411 4.024725 TCGAAAATACAAAGGTGAACGTGG 60.025 41.667 0.00 0.00 0.00 4.94
3064 3412 4.542735 GAAAATACAAAGGTGAACGTGGG 58.457 43.478 0.00 0.00 0.00 4.61
3065 3413 2.943036 ATACAAAGGTGAACGTGGGT 57.057 45.000 0.00 0.00 0.00 4.51
3066 3414 1.956297 TACAAAGGTGAACGTGGGTG 58.044 50.000 0.00 0.00 0.00 4.61
3067 3415 1.358759 CAAAGGTGAACGTGGGTGC 59.641 57.895 0.00 0.00 0.00 5.01
3068 3416 1.077357 AAAGGTGAACGTGGGTGCA 60.077 52.632 0.00 0.00 0.00 4.57
3084 3432 3.353029 CACGCGCACCCATGTGAA 61.353 61.111 5.73 0.00 45.76 3.18
3085 3433 2.359850 ACGCGCACCCATGTGAAT 60.360 55.556 5.73 0.00 45.76 2.57
3086 3434 1.078778 ACGCGCACCCATGTGAATA 60.079 52.632 5.73 0.00 45.76 1.75
3087 3435 1.089481 ACGCGCACCCATGTGAATAG 61.089 55.000 5.73 0.00 45.76 1.73
3088 3436 1.089481 CGCGCACCCATGTGAATAGT 61.089 55.000 8.75 0.00 45.76 2.12
3089 3437 1.804746 CGCGCACCCATGTGAATAGTA 60.805 52.381 8.75 0.00 45.76 1.82
3090 3438 2.285083 GCGCACCCATGTGAATAGTAA 58.715 47.619 0.30 0.00 45.76 2.24
3091 3439 2.680841 GCGCACCCATGTGAATAGTAAA 59.319 45.455 0.30 0.00 45.76 2.01
3092 3440 3.315191 GCGCACCCATGTGAATAGTAAAT 59.685 43.478 0.30 0.00 45.76 1.40
3093 3441 4.202010 GCGCACCCATGTGAATAGTAAATT 60.202 41.667 0.30 0.00 45.76 1.82
3094 3442 5.510671 CGCACCCATGTGAATAGTAAATTC 58.489 41.667 0.00 0.00 45.76 2.17
3095 3443 5.065859 CGCACCCATGTGAATAGTAAATTCA 59.934 40.000 0.00 0.00 45.76 2.57
3096 3444 6.238731 CGCACCCATGTGAATAGTAAATTCAT 60.239 38.462 3.93 0.00 45.76 2.57
3097 3445 7.041440 CGCACCCATGTGAATAGTAAATTCATA 60.041 37.037 3.93 2.21 45.76 2.15
3098 3446 8.629158 GCACCCATGTGAATAGTAAATTCATAA 58.371 33.333 3.93 0.00 45.76 1.90
3141 3489 3.934457 AAAATCCTGAAATTTCGCGGT 57.066 38.095 19.75 5.51 0.00 5.68
3142 3490 5.379732 AAAAATCCTGAAATTTCGCGGTA 57.620 34.783 19.75 11.12 0.00 4.02
3143 3491 5.576447 AAAATCCTGAAATTTCGCGGTAT 57.424 34.783 19.75 12.37 0.00 2.73
3144 3492 4.552166 AATCCTGAAATTTCGCGGTATG 57.448 40.909 19.75 3.72 0.00 2.39
3145 3493 3.254470 TCCTGAAATTTCGCGGTATGA 57.746 42.857 19.75 4.56 0.00 2.15
3146 3494 3.601435 TCCTGAAATTTCGCGGTATGAA 58.399 40.909 19.75 0.00 0.00 2.57
3147 3495 4.196193 TCCTGAAATTTCGCGGTATGAAT 58.804 39.130 19.75 0.00 0.00 2.57
3148 3496 4.272504 TCCTGAAATTTCGCGGTATGAATC 59.727 41.667 19.75 0.00 0.00 2.52
3149 3497 4.273480 CCTGAAATTTCGCGGTATGAATCT 59.727 41.667 13.34 0.00 0.00 2.40
3150 3498 5.220854 CCTGAAATTTCGCGGTATGAATCTT 60.221 40.000 13.34 0.00 0.00 2.40
3151 3499 6.018262 CCTGAAATTTCGCGGTATGAATCTTA 60.018 38.462 13.34 0.00 0.00 2.10
3152 3500 6.943981 TGAAATTTCGCGGTATGAATCTTAG 58.056 36.000 13.34 0.00 0.00 2.18
3153 3501 6.537301 TGAAATTTCGCGGTATGAATCTTAGT 59.463 34.615 13.34 0.00 0.00 2.24
3154 3502 6.526566 AATTTCGCGGTATGAATCTTAGTC 57.473 37.500 6.13 0.00 0.00 2.59
3155 3503 3.263602 TCGCGGTATGAATCTTAGTCG 57.736 47.619 6.13 0.00 0.00 4.18
3156 3504 2.874086 TCGCGGTATGAATCTTAGTCGA 59.126 45.455 6.13 0.00 0.00 4.20
3157 3505 3.501062 TCGCGGTATGAATCTTAGTCGAT 59.499 43.478 6.13 0.00 0.00 3.59
3158 3506 3.846896 CGCGGTATGAATCTTAGTCGATC 59.153 47.826 0.00 0.00 0.00 3.69
3159 3507 4.612939 CGCGGTATGAATCTTAGTCGATCA 60.613 45.833 0.00 0.00 0.00 2.92
3160 3508 5.403246 GCGGTATGAATCTTAGTCGATCAT 58.597 41.667 0.00 0.00 0.00 2.45
3161 3509 5.864474 GCGGTATGAATCTTAGTCGATCATT 59.136 40.000 1.13 0.00 0.00 2.57
3162 3510 6.034044 GCGGTATGAATCTTAGTCGATCATTC 59.966 42.308 1.13 0.00 0.00 2.67
3163 3511 7.309177 CGGTATGAATCTTAGTCGATCATTCT 58.691 38.462 1.13 0.00 0.00 2.40
3164 3512 8.451748 CGGTATGAATCTTAGTCGATCATTCTA 58.548 37.037 1.13 0.00 0.00 2.10
3165 3513 9.562583 GGTATGAATCTTAGTCGATCATTCTAC 57.437 37.037 1.13 0.00 0.00 2.59
3168 3516 8.451908 TGAATCTTAGTCGATCATTCTACTCA 57.548 34.615 0.00 0.00 31.03 3.41
3169 3517 8.346300 TGAATCTTAGTCGATCATTCTACTCAC 58.654 37.037 0.00 0.00 31.03 3.51
3170 3518 7.809546 ATCTTAGTCGATCATTCTACTCACA 57.190 36.000 0.00 0.00 31.03 3.58
3171 3519 7.809546 TCTTAGTCGATCATTCTACTCACAT 57.190 36.000 0.00 0.00 31.03 3.21
3172 3520 7.643579 TCTTAGTCGATCATTCTACTCACATG 58.356 38.462 0.00 0.00 31.03 3.21
3173 3521 5.843673 AGTCGATCATTCTACTCACATGT 57.156 39.130 0.00 0.00 0.00 3.21
3174 3522 5.586339 AGTCGATCATTCTACTCACATGTG 58.414 41.667 20.18 20.18 0.00 3.21
3175 3523 5.358160 AGTCGATCATTCTACTCACATGTGA 59.642 40.000 26.33 26.33 38.06 3.58
3176 3524 6.036470 GTCGATCATTCTACTCACATGTGAA 58.964 40.000 27.63 14.24 39.39 3.18
3177 3525 6.198029 GTCGATCATTCTACTCACATGTGAAG 59.802 42.308 27.63 22.38 39.39 3.02
3178 3526 6.038985 CGATCATTCTACTCACATGTGAAGT 58.961 40.000 27.63 25.77 39.39 3.01
3179 3527 6.533012 CGATCATTCTACTCACATGTGAAGTT 59.467 38.462 27.63 17.36 39.39 2.66
3180 3528 7.063898 CGATCATTCTACTCACATGTGAAGTTT 59.936 37.037 27.63 15.11 39.39 2.66
3181 3529 7.658179 TCATTCTACTCACATGTGAAGTTTC 57.342 36.000 27.63 0.00 39.39 2.78
3182 3530 7.216494 TCATTCTACTCACATGTGAAGTTTCA 58.784 34.615 27.63 11.90 39.39 2.69
3183 3531 7.879677 TCATTCTACTCACATGTGAAGTTTCAT 59.120 33.333 27.63 13.48 39.73 2.57
3184 3532 7.425577 TTCTACTCACATGTGAAGTTTCATG 57.574 36.000 27.63 16.21 44.56 3.07
3185 3533 6.758254 TCTACTCACATGTGAAGTTTCATGA 58.242 36.000 27.63 14.36 42.52 3.07
3186 3534 7.389232 TCTACTCACATGTGAAGTTTCATGAT 58.611 34.615 27.63 8.34 42.52 2.45
3187 3535 6.250344 ACTCACATGTGAAGTTTCATGATG 57.750 37.500 27.63 14.41 42.52 3.07
3188 3536 5.766670 ACTCACATGTGAAGTTTCATGATGT 59.233 36.000 27.63 15.01 42.52 3.06
3189 3537 6.936335 ACTCACATGTGAAGTTTCATGATGTA 59.064 34.615 27.63 1.53 42.52 2.29
3190 3538 7.609146 ACTCACATGTGAAGTTTCATGATGTAT 59.391 33.333 27.63 1.41 42.52 2.29
3191 3539 8.339344 TCACATGTGAAGTTTCATGATGTATT 57.661 30.769 26.02 0.00 42.52 1.89
3192 3540 9.447157 TCACATGTGAAGTTTCATGATGTATTA 57.553 29.630 26.02 0.00 42.52 0.98
3197 3545 8.511321 TGTGAAGTTTCATGATGTATTAACACC 58.489 33.333 0.00 0.00 37.76 4.16
3198 3546 7.968405 GTGAAGTTTCATGATGTATTAACACCC 59.032 37.037 0.00 0.00 37.76 4.61
3199 3547 7.667635 TGAAGTTTCATGATGTATTAACACCCA 59.332 33.333 0.00 0.00 33.16 4.51
3200 3548 8.593945 AAGTTTCATGATGTATTAACACCCAT 57.406 30.769 0.00 0.00 38.78 4.00
3201 3549 7.999679 AGTTTCATGATGTATTAACACCCATG 58.000 34.615 0.00 9.00 43.89 3.66
3202 3550 6.957920 TTCATGATGTATTAACACCCATGG 57.042 37.500 4.14 4.14 43.35 3.66
3203 3551 6.012337 TCATGATGTATTAACACCCATGGT 57.988 37.500 11.73 0.00 43.35 3.55
3204 3552 7.142995 TCATGATGTATTAACACCCATGGTA 57.857 36.000 11.73 0.00 43.35 3.25
3205 3553 7.754624 TCATGATGTATTAACACCCATGGTAT 58.245 34.615 11.73 0.00 43.35 2.73
3206 3554 8.224025 TCATGATGTATTAACACCCATGGTATT 58.776 33.333 11.73 4.33 43.35 1.89
3207 3555 8.514594 CATGATGTATTAACACCCATGGTATTC 58.485 37.037 11.73 0.00 41.54 1.75
3208 3556 7.811282 TGATGTATTAACACCCATGGTATTCT 58.189 34.615 11.73 0.00 38.78 2.40
3209 3557 8.278639 TGATGTATTAACACCCATGGTATTCTT 58.721 33.333 11.73 0.00 38.78 2.52
3210 3558 9.787435 GATGTATTAACACCCATGGTATTCTTA 57.213 33.333 11.73 0.00 38.78 2.10
3211 3559 9.793259 ATGTATTAACACCCATGGTATTCTTAG 57.207 33.333 11.73 0.00 38.78 2.18
3212 3560 8.774183 TGTATTAACACCCATGGTATTCTTAGT 58.226 33.333 11.73 0.00 32.11 2.24
3213 3561 9.052759 GTATTAACACCCATGGTATTCTTAGTG 57.947 37.037 11.73 11.15 32.11 2.74
3214 3562 5.772393 AACACCCATGGTATTCTTAGTGA 57.228 39.130 17.12 0.00 32.11 3.41
3215 3563 5.772393 ACACCCATGGTATTCTTAGTGAA 57.228 39.130 17.12 0.00 34.39 3.18
3216 3564 5.745227 ACACCCATGGTATTCTTAGTGAAG 58.255 41.667 17.12 0.00 33.70 3.02
3217 3565 5.487488 ACACCCATGGTATTCTTAGTGAAGA 59.513 40.000 17.12 0.00 35.30 2.87
3218 3566 6.012858 ACACCCATGGTATTCTTAGTGAAGAA 60.013 38.462 17.12 2.80 44.02 2.52
3219 3567 6.884295 CACCCATGGTATTCTTAGTGAAGAAA 59.116 38.462 11.73 0.00 43.53 2.52
3220 3568 7.393234 CACCCATGGTATTCTTAGTGAAGAAAA 59.607 37.037 11.73 0.00 43.53 2.29
3230 3578 6.989437 TCTTAGTGAAGAAAATACGAATGCG 58.011 36.000 0.00 0.00 38.80 4.73
3231 3579 4.600012 AGTGAAGAAAATACGAATGCGG 57.400 40.909 0.00 0.00 43.17 5.69
3232 3580 4.000988 AGTGAAGAAAATACGAATGCGGT 58.999 39.130 0.00 0.00 43.17 5.68
3233 3581 4.092968 AGTGAAGAAAATACGAATGCGGTC 59.907 41.667 0.00 0.00 43.17 4.79
3234 3582 3.997681 TGAAGAAAATACGAATGCGGTCA 59.002 39.130 0.00 0.00 43.17 4.02
3235 3583 4.634004 TGAAGAAAATACGAATGCGGTCAT 59.366 37.500 0.00 0.00 43.17 3.06
3236 3584 5.813157 TGAAGAAAATACGAATGCGGTCATA 59.187 36.000 0.00 0.00 43.17 2.15
3237 3585 5.652744 AGAAAATACGAATGCGGTCATAC 57.347 39.130 0.00 0.00 43.17 2.39
3238 3586 5.357257 AGAAAATACGAATGCGGTCATACT 58.643 37.500 0.00 0.00 43.17 2.12
3239 3587 6.509656 AGAAAATACGAATGCGGTCATACTA 58.490 36.000 0.00 0.00 43.17 1.82
3240 3588 7.152645 AGAAAATACGAATGCGGTCATACTAT 58.847 34.615 0.00 0.00 43.17 2.12
3241 3589 7.656137 AGAAAATACGAATGCGGTCATACTATT 59.344 33.333 0.00 0.00 43.17 1.73
3242 3590 6.946229 AATACGAATGCGGTCATACTATTC 57.054 37.500 0.00 0.00 43.17 1.75
3243 3591 4.316205 ACGAATGCGGTCATACTATTCA 57.684 40.909 0.00 0.00 43.17 2.57
3244 3592 4.883083 ACGAATGCGGTCATACTATTCAT 58.117 39.130 0.00 0.00 43.17 2.57
3245 3593 5.297547 ACGAATGCGGTCATACTATTCATT 58.702 37.500 0.00 0.00 43.17 2.57
3246 3594 6.452242 ACGAATGCGGTCATACTATTCATTA 58.548 36.000 0.00 0.00 43.17 1.90
3247 3595 6.926826 ACGAATGCGGTCATACTATTCATTAA 59.073 34.615 0.00 0.00 43.17 1.40
3248 3596 7.439955 ACGAATGCGGTCATACTATTCATTAAA 59.560 33.333 0.00 0.00 43.17 1.52
3249 3597 7.740346 CGAATGCGGTCATACTATTCATTAAAC 59.260 37.037 0.00 0.00 31.46 2.01
3250 3598 8.445275 AATGCGGTCATACTATTCATTAAACA 57.555 30.769 0.00 0.00 31.46 2.83
3251 3599 7.477144 TGCGGTCATACTATTCATTAAACAG 57.523 36.000 0.00 0.00 0.00 3.16
3252 3600 7.045416 TGCGGTCATACTATTCATTAAACAGT 58.955 34.615 0.00 0.00 0.00 3.55
3253 3601 7.011016 TGCGGTCATACTATTCATTAAACAGTG 59.989 37.037 0.00 0.00 0.00 3.66
3254 3602 7.345192 CGGTCATACTATTCATTAAACAGTGC 58.655 38.462 0.00 0.00 0.00 4.40
3255 3603 7.224753 CGGTCATACTATTCATTAAACAGTGCT 59.775 37.037 0.00 0.00 0.00 4.40
3256 3604 8.893727 GGTCATACTATTCATTAAACAGTGCTT 58.106 33.333 0.00 0.00 0.00 3.91
3289 3637 9.774742 ATAGTTTTGATTAGCTTCGATTTTGTC 57.225 29.630 0.00 0.00 0.00 3.18
3290 3638 7.648142 AGTTTTGATTAGCTTCGATTTTGTCA 58.352 30.769 0.00 0.00 0.00 3.58
3291 3639 8.299570 AGTTTTGATTAGCTTCGATTTTGTCAT 58.700 29.630 0.00 0.00 0.00 3.06
3292 3640 8.915654 GTTTTGATTAGCTTCGATTTTGTCATT 58.084 29.630 0.00 0.00 0.00 2.57
3293 3641 9.474920 TTTTGATTAGCTTCGATTTTGTCATTT 57.525 25.926 0.00 0.00 0.00 2.32
3294 3642 9.474920 TTTGATTAGCTTCGATTTTGTCATTTT 57.525 25.926 0.00 0.00 0.00 1.82
3295 3643 9.474920 TTGATTAGCTTCGATTTTGTCATTTTT 57.525 25.926 0.00 0.00 0.00 1.94
3296 3644 8.914654 TGATTAGCTTCGATTTTGTCATTTTTG 58.085 29.630 0.00 0.00 0.00 2.44
3297 3645 5.580911 AGCTTCGATTTTGTCATTTTTGC 57.419 34.783 0.00 0.00 0.00 3.68
3298 3646 4.448732 AGCTTCGATTTTGTCATTTTTGCC 59.551 37.500 0.00 0.00 0.00 4.52
3299 3647 4.377328 GCTTCGATTTTGTCATTTTTGCCC 60.377 41.667 0.00 0.00 0.00 5.36
3300 3648 4.327982 TCGATTTTGTCATTTTTGCCCA 57.672 36.364 0.00 0.00 0.00 5.36
3301 3649 4.305769 TCGATTTTGTCATTTTTGCCCAG 58.694 39.130 0.00 0.00 0.00 4.45
3302 3650 4.038522 TCGATTTTGTCATTTTTGCCCAGA 59.961 37.500 0.00 0.00 0.00 3.86
3303 3651 4.931002 CGATTTTGTCATTTTTGCCCAGAT 59.069 37.500 0.00 0.00 0.00 2.90
3304 3652 5.409214 CGATTTTGTCATTTTTGCCCAGATT 59.591 36.000 0.00 0.00 0.00 2.40
3305 3653 6.589523 CGATTTTGTCATTTTTGCCCAGATTA 59.410 34.615 0.00 0.00 0.00 1.75
3306 3654 7.411804 CGATTTTGTCATTTTTGCCCAGATTAC 60.412 37.037 0.00 0.00 0.00 1.89
3307 3655 4.799564 TGTCATTTTTGCCCAGATTACC 57.200 40.909 0.00 0.00 0.00 2.85
3308 3656 4.155709 TGTCATTTTTGCCCAGATTACCA 58.844 39.130 0.00 0.00 0.00 3.25
3309 3657 4.021544 TGTCATTTTTGCCCAGATTACCAC 60.022 41.667 0.00 0.00 0.00 4.16
3310 3658 3.192422 TCATTTTTGCCCAGATTACCACG 59.808 43.478 0.00 0.00 0.00 4.94
3311 3659 1.540267 TTTTGCCCAGATTACCACGG 58.460 50.000 0.00 0.00 0.00 4.94
3312 3660 0.693622 TTTGCCCAGATTACCACGGA 59.306 50.000 0.00 0.00 0.00 4.69
3313 3661 0.916086 TTGCCCAGATTACCACGGAT 59.084 50.000 0.00 0.00 0.00 4.18
3314 3662 0.180171 TGCCCAGATTACCACGGATG 59.820 55.000 0.00 0.00 0.00 3.51
3315 3663 0.180406 GCCCAGATTACCACGGATGT 59.820 55.000 0.00 0.00 0.00 3.06
3316 3664 1.953559 CCCAGATTACCACGGATGTG 58.046 55.000 0.00 0.00 46.00 3.21
3328 3676 3.313012 ACGGATGTGATTTCTTCGTGA 57.687 42.857 0.00 0.00 0.00 4.35
3329 3677 3.659786 ACGGATGTGATTTCTTCGTGAA 58.340 40.909 0.00 0.00 0.00 3.18
3331 3679 4.084013 ACGGATGTGATTTCTTCGTGAAAC 60.084 41.667 8.09 4.80 46.08 2.78
3332 3680 4.152402 CGGATGTGATTTCTTCGTGAAACT 59.848 41.667 8.09 0.78 46.08 2.66
3333 3681 5.334105 CGGATGTGATTTCTTCGTGAAACTT 60.334 40.000 8.09 0.00 46.08 2.66
3334 3682 6.080406 GGATGTGATTTCTTCGTGAAACTTC 58.920 40.000 8.09 5.07 46.08 3.01
3335 3683 6.293407 GGATGTGATTTCTTCGTGAAACTTCA 60.293 38.462 8.09 7.01 46.08 3.02
3336 3684 6.618287 TGTGATTTCTTCGTGAAACTTCAT 57.382 33.333 8.09 0.00 46.08 2.57
3337 3685 7.722795 TGTGATTTCTTCGTGAAACTTCATA 57.277 32.000 8.09 5.90 46.08 2.15
3338 3686 8.322906 TGTGATTTCTTCGTGAAACTTCATAT 57.677 30.769 8.09 0.00 46.08 1.78
3339 3687 8.229811 TGTGATTTCTTCGTGAAACTTCATATG 58.770 33.333 0.00 0.00 46.08 1.78
3340 3688 7.217070 GTGATTTCTTCGTGAAACTTCATATGC 59.783 37.037 0.00 0.00 46.08 3.14
3341 3689 4.840401 TCTTCGTGAAACTTCATATGCG 57.160 40.909 0.00 0.00 39.73 4.73
3342 3690 4.490743 TCTTCGTGAAACTTCATATGCGA 58.509 39.130 0.00 0.00 39.73 5.10
3343 3691 4.562789 TCTTCGTGAAACTTCATATGCGAG 59.437 41.667 0.00 1.21 39.73 5.03
3344 3692 3.845178 TCGTGAAACTTCATATGCGAGT 58.155 40.909 0.00 1.86 39.73 4.18
3345 3693 4.989044 TCGTGAAACTTCATATGCGAGTA 58.011 39.130 10.69 0.00 39.73 2.59
3346 3694 5.588240 TCGTGAAACTTCATATGCGAGTAT 58.412 37.500 10.69 2.01 39.73 2.12
3347 3695 6.731164 TCGTGAAACTTCATATGCGAGTATA 58.269 36.000 10.69 1.18 39.73 1.47
3348 3696 6.635641 TCGTGAAACTTCATATGCGAGTATAC 59.364 38.462 10.69 0.00 39.73 1.47
3349 3697 6.129168 CGTGAAACTTCATATGCGAGTATACC 60.129 42.308 10.69 0.00 39.73 2.73
3350 3698 5.918576 TGAAACTTCATATGCGAGTATACCG 59.081 40.000 10.69 4.41 31.01 4.02
3351 3699 4.436242 ACTTCATATGCGAGTATACCGG 57.564 45.455 0.00 0.00 0.00 5.28
3352 3700 3.825014 ACTTCATATGCGAGTATACCGGT 59.175 43.478 13.98 13.98 0.00 5.28
3353 3701 4.280174 ACTTCATATGCGAGTATACCGGTT 59.720 41.667 15.04 3.05 0.00 4.44
3354 3702 4.168922 TCATATGCGAGTATACCGGTTG 57.831 45.455 15.04 0.00 0.00 3.77
3355 3703 3.822167 TCATATGCGAGTATACCGGTTGA 59.178 43.478 15.04 2.06 0.00 3.18
3356 3704 4.461431 TCATATGCGAGTATACCGGTTGAT 59.539 41.667 15.04 3.06 0.00 2.57
3357 3705 3.746045 ATGCGAGTATACCGGTTGATT 57.254 42.857 15.04 0.00 0.00 2.57
3358 3706 3.530265 TGCGAGTATACCGGTTGATTT 57.470 42.857 15.04 0.00 0.00 2.17
3359 3707 3.864243 TGCGAGTATACCGGTTGATTTT 58.136 40.909 15.04 0.00 0.00 1.82
3360 3708 3.619483 TGCGAGTATACCGGTTGATTTTG 59.381 43.478 15.04 0.29 0.00 2.44
3361 3709 3.619929 GCGAGTATACCGGTTGATTTTGT 59.380 43.478 15.04 0.00 0.00 2.83
3362 3710 4.805192 GCGAGTATACCGGTTGATTTTGTA 59.195 41.667 15.04 0.00 0.00 2.41
3363 3711 5.464389 GCGAGTATACCGGTTGATTTTGTAT 59.536 40.000 15.04 0.00 0.00 2.29
3364 3712 6.642131 GCGAGTATACCGGTTGATTTTGTATA 59.358 38.462 15.04 0.00 0.00 1.47
3365 3713 7.330208 GCGAGTATACCGGTTGATTTTGTATAT 59.670 37.037 15.04 0.00 29.87 0.86
3366 3714 9.199982 CGAGTATACCGGTTGATTTTGTATATT 57.800 33.333 15.04 0.00 29.87 1.28
3436 3784 7.925993 TGAATTTACTATTCATAAAGGGTGCG 58.074 34.615 0.00 0.00 33.55 5.34
3437 3785 5.744666 TTTACTATTCATAAAGGGTGCGC 57.255 39.130 0.00 0.00 0.00 6.09
3438 3786 3.275617 ACTATTCATAAAGGGTGCGCA 57.724 42.857 5.66 5.66 0.00 6.09
3439 3787 2.943033 ACTATTCATAAAGGGTGCGCAC 59.057 45.455 32.15 32.15 0.00 5.34
3440 3788 0.732571 ATTCATAAAGGGTGCGCACG 59.267 50.000 32.35 17.72 0.00 5.34
3441 3789 1.917782 TTCATAAAGGGTGCGCACGC 61.918 55.000 40.77 40.77 43.63 5.34
3451 3799 4.759096 GCGCACGCACCCATGTTC 62.759 66.667 10.65 0.00 41.49 3.18
3452 3800 3.353029 CGCACGCACCCATGTTCA 61.353 61.111 0.00 0.00 0.00 3.18
3453 3801 2.255252 GCACGCACCCATGTTCAC 59.745 61.111 0.00 0.00 0.00 3.18
3454 3802 2.953821 CACGCACCCATGTTCACC 59.046 61.111 0.00 0.00 0.00 4.02
3455 3803 1.896183 CACGCACCCATGTTCACCA 60.896 57.895 0.00 0.00 0.00 4.17
3456 3804 1.152860 ACGCACCCATGTTCACCAA 60.153 52.632 0.00 0.00 0.00 3.67
3457 3805 0.753479 ACGCACCCATGTTCACCAAA 60.753 50.000 0.00 0.00 0.00 3.28
3458 3806 0.602562 CGCACCCATGTTCACCAAAT 59.397 50.000 0.00 0.00 0.00 2.32
3459 3807 1.402720 CGCACCCATGTTCACCAAATC 60.403 52.381 0.00 0.00 0.00 2.17
3460 3808 1.066929 GCACCCATGTTCACCAAATCC 60.067 52.381 0.00 0.00 0.00 3.01
3461 3809 1.202114 CACCCATGTTCACCAAATCCG 59.798 52.381 0.00 0.00 0.00 4.18
3462 3810 0.173255 CCCATGTTCACCAAATCCGC 59.827 55.000 0.00 0.00 0.00 5.54
3463 3811 0.173255 CCATGTTCACCAAATCCGCC 59.827 55.000 0.00 0.00 0.00 6.13
3464 3812 1.176527 CATGTTCACCAAATCCGCCT 58.823 50.000 0.00 0.00 0.00 5.52
3465 3813 1.133025 CATGTTCACCAAATCCGCCTC 59.867 52.381 0.00 0.00 0.00 4.70
3466 3814 0.608035 TGTTCACCAAATCCGCCTCC 60.608 55.000 0.00 0.00 0.00 4.30
3467 3815 1.001393 TTCACCAAATCCGCCTCCC 60.001 57.895 0.00 0.00 0.00 4.30
3468 3816 1.784301 TTCACCAAATCCGCCTCCCA 61.784 55.000 0.00 0.00 0.00 4.37
3469 3817 1.304052 CACCAAATCCGCCTCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
3470 3818 0.684153 CACCAAATCCGCCTCCCAAT 60.684 55.000 0.00 0.00 0.00 3.16
3471 3819 0.041090 ACCAAATCCGCCTCCCAATT 59.959 50.000 0.00 0.00 0.00 2.32
3472 3820 0.746659 CCAAATCCGCCTCCCAATTC 59.253 55.000 0.00 0.00 0.00 2.17
3602 4198 3.577848 CAGAGTCCATCCAGAGATTAGGG 59.422 52.174 0.00 0.00 0.00 3.53
3647 4243 4.019174 CCAATTCATGAGCTACCTGGTTT 58.981 43.478 3.84 0.00 0.00 3.27
3648 4244 4.463891 CCAATTCATGAGCTACCTGGTTTT 59.536 41.667 3.84 0.00 0.00 2.43
3667 4263 1.963679 TTTTTGCGGGGTCATGAGC 59.036 52.632 16.65 16.65 0.00 4.26
3668 4264 0.539438 TTTTTGCGGGGTCATGAGCT 60.539 50.000 23.24 0.00 0.00 4.09
3669 4265 0.326595 TTTTGCGGGGTCATGAGCTA 59.673 50.000 23.24 4.87 0.00 3.32
3670 4266 0.392461 TTTGCGGGGTCATGAGCTAC 60.392 55.000 23.24 15.53 0.00 3.58
3671 4267 2.109181 GCGGGGTCATGAGCTACC 59.891 66.667 23.24 15.93 34.85 3.18
3672 4268 2.435693 GCGGGGTCATGAGCTACCT 61.436 63.158 23.24 0.00 35.97 3.08
3673 4269 1.443407 CGGGGTCATGAGCTACCTG 59.557 63.158 23.24 11.59 35.97 4.00
3674 4270 1.043116 CGGGGTCATGAGCTACCTGA 61.043 60.000 23.24 0.00 35.97 3.86
3675 4271 1.428869 GGGGTCATGAGCTACCTGAT 58.571 55.000 23.24 0.00 35.97 2.90
3676 4272 1.771255 GGGGTCATGAGCTACCTGATT 59.229 52.381 23.24 0.00 35.97 2.57
3677 4273 2.972713 GGGGTCATGAGCTACCTGATTA 59.027 50.000 23.24 0.00 35.97 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.238456 CCGAGCATATATTCTGTGAAAAGCAA 60.238 38.462 0.00 0.00 0.00 3.91
36 37 3.866651 CCTATCAATTCTAGGGCATCCG 58.133 50.000 3.53 0.00 38.33 4.18
191 374 4.817874 ATAGGAGCTAGGAACCTACACT 57.182 45.455 0.41 0.00 38.79 3.55
202 385 7.902087 AGAGTTAAAAGCCATATAGGAGCTAG 58.098 38.462 0.00 0.00 41.22 3.42
203 386 7.857404 AGAGTTAAAAGCCATATAGGAGCTA 57.143 36.000 0.00 0.00 41.22 3.32
204 387 6.755542 AGAGTTAAAAGCCATATAGGAGCT 57.244 37.500 0.00 0.00 41.22 4.09
205 388 7.100409 CCTAGAGTTAAAAGCCATATAGGAGC 58.900 42.308 0.00 0.00 41.22 4.70
237 420 6.592994 CAGTGATATGCCAGGAACTATGTATG 59.407 42.308 0.00 0.00 36.02 2.39
256 440 3.497405 CCCATATAGCTTGTGCCAGTGAT 60.497 47.826 0.00 0.00 40.80 3.06
299 486 7.989947 AGAACTACTCATGGGACCTAATTAA 57.010 36.000 0.00 0.00 0.00 1.40
399 586 3.054361 TGTTTTCTCAAGATCTAGGGCCC 60.054 47.826 16.46 16.46 0.00 5.80
597 818 9.750125 CTGATTGTGTACATACATACATACTGT 57.250 33.333 0.00 0.00 37.40 3.55
599 820 8.642432 AGCTGATTGTGTACATACATACATACT 58.358 33.333 0.00 0.00 37.40 2.12
600 821 8.703336 CAGCTGATTGTGTACATACATACATAC 58.297 37.037 8.42 0.00 37.40 2.39
602 823 6.707608 CCAGCTGATTGTGTACATACATACAT 59.292 38.462 17.39 0.00 37.40 2.29
603 824 6.048509 CCAGCTGATTGTGTACATACATACA 58.951 40.000 17.39 0.00 38.63 2.29
604 825 6.280643 TCCAGCTGATTGTGTACATACATAC 58.719 40.000 17.39 0.00 38.63 2.39
605 826 6.478512 TCCAGCTGATTGTGTACATACATA 57.521 37.500 17.39 0.00 38.63 2.29
606 827 5.357742 TCCAGCTGATTGTGTACATACAT 57.642 39.130 17.39 0.00 38.63 2.29
607 828 4.758688 CTCCAGCTGATTGTGTACATACA 58.241 43.478 17.39 0.00 0.00 2.29
608 829 3.557595 GCTCCAGCTGATTGTGTACATAC 59.442 47.826 17.39 0.00 38.21 2.39
609 830 3.197549 TGCTCCAGCTGATTGTGTACATA 59.802 43.478 17.39 0.00 42.66 2.29
610 831 2.026915 TGCTCCAGCTGATTGTGTACAT 60.027 45.455 17.39 0.00 42.66 2.29
611 832 1.347378 TGCTCCAGCTGATTGTGTACA 59.653 47.619 17.39 0.00 42.66 2.90
612 833 1.734465 GTGCTCCAGCTGATTGTGTAC 59.266 52.381 17.39 5.68 42.66 2.90
702 949 5.882553 TCAGTTAAAACTTGGTTTCGGTTC 58.117 37.500 0.00 0.00 37.08 3.62
707 954 6.019075 GGCACATTCAGTTAAAACTTGGTTTC 60.019 38.462 0.00 0.00 37.08 2.78
835 1082 7.944729 AATCATGCATCTTGGTTAGTAAAGT 57.055 32.000 0.00 0.00 0.00 2.66
867 1121 0.250553 TACAAAGGGACACAAGGGCG 60.251 55.000 0.00 0.00 0.00 6.13
1096 1358 2.089201 TCTCTACGAGCACCGATCAAA 58.911 47.619 5.53 0.00 41.76 2.69
1102 1364 0.171455 AAGCTTCTCTACGAGCACCG 59.829 55.000 0.00 0.00 45.44 4.94
1141 1403 0.247655 CGCCCATGTCGAAATCAACG 60.248 55.000 0.00 0.00 0.00 4.10
1144 1406 0.461870 CCTCGCCCATGTCGAAATCA 60.462 55.000 8.35 0.00 35.38 2.57
1145 1407 1.160329 CCCTCGCCCATGTCGAAATC 61.160 60.000 8.35 0.00 35.38 2.17
1146 1408 1.153168 CCCTCGCCCATGTCGAAAT 60.153 57.895 8.35 0.00 35.38 2.17
1147 1409 2.267642 CCCTCGCCCATGTCGAAA 59.732 61.111 8.35 0.00 35.38 3.46
1291 1576 2.261361 CCATCGTCGTGGTCAGCA 59.739 61.111 5.89 0.00 34.46 4.41
1427 1712 0.702383 GCAAGCGTAATTGTTGCACG 59.298 50.000 10.17 3.29 44.87 5.34
1484 1769 2.618241 GCACAACATCACTGTCAAAGGA 59.382 45.455 0.00 0.00 33.36 3.36
1558 1843 6.204688 CACCATATTAGCATTATCACACGGTT 59.795 38.462 0.00 0.00 0.00 4.44
1671 1956 2.286301 GCTGCTTCTTCTTCATCATCGC 60.286 50.000 0.00 0.00 0.00 4.58
1755 2042 7.477422 GTGTGTCATGTCGTACAAATACAATTC 59.523 37.037 0.00 0.00 0.00 2.17
1886 2179 3.760035 ACCAGCTCCGTCGCGATT 61.760 61.111 14.06 0.00 34.40 3.34
2177 2470 3.782244 GTGAGCTTGTGCGCGAGG 61.782 66.667 12.10 0.00 45.42 4.63
2731 3024 5.183228 GGACGACATTAATTCTGGAAGGAA 58.817 41.667 0.00 0.00 0.00 3.36
2984 3290 2.872245 TCTGTCAGTTTCTCTTTTGGCG 59.128 45.455 0.00 0.00 0.00 5.69
3041 3389 4.215965 CCACGTTCACCTTTGTATTTTCG 58.784 43.478 0.00 0.00 0.00 3.46
3042 3390 4.037089 ACCCACGTTCACCTTTGTATTTTC 59.963 41.667 0.00 0.00 0.00 2.29
3043 3391 3.955551 ACCCACGTTCACCTTTGTATTTT 59.044 39.130 0.00 0.00 0.00 1.82
3044 3392 3.316868 CACCCACGTTCACCTTTGTATTT 59.683 43.478 0.00 0.00 0.00 1.40
3045 3393 2.882137 CACCCACGTTCACCTTTGTATT 59.118 45.455 0.00 0.00 0.00 1.89
3046 3394 2.500229 CACCCACGTTCACCTTTGTAT 58.500 47.619 0.00 0.00 0.00 2.29
3047 3395 1.956297 CACCCACGTTCACCTTTGTA 58.044 50.000 0.00 0.00 0.00 2.41
3048 3396 1.381165 GCACCCACGTTCACCTTTGT 61.381 55.000 0.00 0.00 0.00 2.83
3049 3397 1.358759 GCACCCACGTTCACCTTTG 59.641 57.895 0.00 0.00 0.00 2.77
3050 3398 1.077357 TGCACCCACGTTCACCTTT 60.077 52.632 0.00 0.00 0.00 3.11
3051 3399 1.822186 GTGCACCCACGTTCACCTT 60.822 57.895 5.22 0.00 30.80 3.50
3052 3400 2.203153 GTGCACCCACGTTCACCT 60.203 61.111 5.22 0.00 30.80 4.00
3067 3415 1.365368 TATTCACATGGGTGCGCGTG 61.365 55.000 8.43 3.41 44.87 5.34
3068 3416 1.078778 TATTCACATGGGTGCGCGT 60.079 52.632 8.43 0.00 44.87 6.01
3069 3417 1.089481 ACTATTCACATGGGTGCGCG 61.089 55.000 0.00 0.00 44.87 6.86
3070 3418 1.948104 TACTATTCACATGGGTGCGC 58.052 50.000 0.00 0.00 44.87 6.09
3071 3419 5.065859 TGAATTTACTATTCACATGGGTGCG 59.934 40.000 0.00 0.00 44.87 5.34
3072 3420 6.449635 TGAATTTACTATTCACATGGGTGC 57.550 37.500 0.00 0.00 44.87 5.01
3120 3468 4.251543 ACCGCGAAATTTCAGGATTTTT 57.748 36.364 26.90 9.29 29.75 1.94
3121 3469 3.934457 ACCGCGAAATTTCAGGATTTT 57.066 38.095 26.90 9.57 29.75 1.82
3122 3470 4.638421 TCATACCGCGAAATTTCAGGATTT 59.362 37.500 26.90 13.44 32.16 2.17
3123 3471 4.196193 TCATACCGCGAAATTTCAGGATT 58.804 39.130 26.90 15.31 0.00 3.01
3124 3472 3.804036 TCATACCGCGAAATTTCAGGAT 58.196 40.909 26.90 16.67 0.00 3.24
3125 3473 3.254470 TCATACCGCGAAATTTCAGGA 57.746 42.857 26.90 15.58 0.00 3.86
3126 3474 4.273480 AGATTCATACCGCGAAATTTCAGG 59.727 41.667 21.47 21.47 0.00 3.86
3127 3475 5.409643 AGATTCATACCGCGAAATTTCAG 57.590 39.130 17.99 10.68 0.00 3.02
3128 3476 5.811399 AAGATTCATACCGCGAAATTTCA 57.189 34.783 17.99 0.00 0.00 2.69
3129 3477 6.945072 ACTAAGATTCATACCGCGAAATTTC 58.055 36.000 8.23 8.20 0.00 2.17
3130 3478 6.292168 CGACTAAGATTCATACCGCGAAATTT 60.292 38.462 8.23 0.00 0.00 1.82
3131 3479 5.175126 CGACTAAGATTCATACCGCGAAATT 59.825 40.000 8.23 0.00 0.00 1.82
3132 3480 4.680110 CGACTAAGATTCATACCGCGAAAT 59.320 41.667 8.23 0.00 0.00 2.17
3133 3481 4.039703 CGACTAAGATTCATACCGCGAAA 58.960 43.478 8.23 0.00 0.00 3.46
3134 3482 3.313249 TCGACTAAGATTCATACCGCGAA 59.687 43.478 8.23 0.00 0.00 4.70
3135 3483 2.874086 TCGACTAAGATTCATACCGCGA 59.126 45.455 8.23 0.00 0.00 5.87
3136 3484 3.263602 TCGACTAAGATTCATACCGCG 57.736 47.619 0.00 0.00 0.00 6.46
3137 3485 4.795268 TGATCGACTAAGATTCATACCGC 58.205 43.478 0.00 0.00 0.00 5.68
3138 3486 7.309177 AGAATGATCGACTAAGATTCATACCG 58.691 38.462 0.00 0.00 0.00 4.02
3139 3487 9.562583 GTAGAATGATCGACTAAGATTCATACC 57.437 37.037 0.00 0.00 0.00 2.73
3142 3490 9.072375 TGAGTAGAATGATCGACTAAGATTCAT 57.928 33.333 0.00 0.00 40.99 2.57
3143 3491 8.346300 GTGAGTAGAATGATCGACTAAGATTCA 58.654 37.037 0.00 0.00 40.99 2.57
3144 3492 8.346300 TGTGAGTAGAATGATCGACTAAGATTC 58.654 37.037 0.00 0.00 40.99 2.52
3145 3493 8.226819 TGTGAGTAGAATGATCGACTAAGATT 57.773 34.615 0.00 0.00 40.99 2.40
3146 3494 7.809546 TGTGAGTAGAATGATCGACTAAGAT 57.190 36.000 0.00 0.00 40.99 2.40
3147 3495 7.283354 ACATGTGAGTAGAATGATCGACTAAGA 59.717 37.037 0.00 0.00 40.99 2.10
3148 3496 7.378194 CACATGTGAGTAGAATGATCGACTAAG 59.622 40.741 21.64 0.00 40.99 2.18
3149 3497 7.067008 TCACATGTGAGTAGAATGATCGACTAA 59.933 37.037 24.56 0.00 40.99 2.24
3150 3498 6.542370 TCACATGTGAGTAGAATGATCGACTA 59.458 38.462 24.56 0.00 40.99 2.59
3151 3499 5.358160 TCACATGTGAGTAGAATGATCGACT 59.642 40.000 24.56 0.00 43.22 4.18
3152 3500 5.582550 TCACATGTGAGTAGAATGATCGAC 58.417 41.667 24.56 0.00 34.14 4.20
3153 3501 5.835113 TCACATGTGAGTAGAATGATCGA 57.165 39.130 24.56 0.00 34.14 3.59
3154 3502 6.038985 ACTTCACATGTGAGTAGAATGATCG 58.961 40.000 26.84 6.78 41.13 3.69
3155 3503 7.840342 AACTTCACATGTGAGTAGAATGATC 57.160 36.000 26.84 0.00 41.13 2.92
3156 3504 7.879677 TGAAACTTCACATGTGAGTAGAATGAT 59.120 33.333 26.84 12.14 41.13 2.45
3157 3505 7.216494 TGAAACTTCACATGTGAGTAGAATGA 58.784 34.615 26.84 12.15 41.13 2.57
3158 3506 7.425577 TGAAACTTCACATGTGAGTAGAATG 57.574 36.000 26.84 15.67 41.13 2.67
3159 3507 7.879677 TCATGAAACTTCACATGTGAGTAGAAT 59.120 33.333 26.84 17.25 42.75 2.40
3160 3508 7.216494 TCATGAAACTTCACATGTGAGTAGAA 58.784 34.615 26.84 14.05 42.75 2.10
3161 3509 6.758254 TCATGAAACTTCACATGTGAGTAGA 58.242 36.000 26.84 14.37 42.75 2.59
3162 3510 7.118825 ACATCATGAAACTTCACATGTGAGTAG 59.881 37.037 26.48 23.47 40.15 2.57
3163 3511 6.936335 ACATCATGAAACTTCACATGTGAGTA 59.064 34.615 26.48 13.71 40.15 2.59
3164 3512 5.766670 ACATCATGAAACTTCACATGTGAGT 59.233 36.000 26.48 22.26 40.15 3.41
3165 3513 6.250344 ACATCATGAAACTTCACATGTGAG 57.750 37.500 26.48 21.69 40.15 3.51
3166 3514 7.926674 ATACATCATGAAACTTCACATGTGA 57.073 32.000 24.56 24.56 41.02 3.58
3171 3519 8.511321 GGTGTTAATACATCATGAAACTTCACA 58.489 33.333 0.00 0.00 36.97 3.58
3172 3520 7.968405 GGGTGTTAATACATCATGAAACTTCAC 59.032 37.037 0.00 2.74 37.11 3.18
3173 3521 7.667635 TGGGTGTTAATACATCATGAAACTTCA 59.332 33.333 0.00 0.00 37.11 3.02
3174 3522 8.050778 TGGGTGTTAATACATCATGAAACTTC 57.949 34.615 0.00 0.00 37.11 3.01
3175 3523 8.469200 CATGGGTGTTAATACATCATGAAACTT 58.531 33.333 21.81 0.00 43.57 2.66
3176 3524 7.068593 CCATGGGTGTTAATACATCATGAAACT 59.931 37.037 25.07 0.00 43.57 2.66
3177 3525 7.147915 ACCATGGGTGTTAATACATCATGAAAC 60.148 37.037 25.07 0.00 43.57 2.78
3178 3526 6.894654 ACCATGGGTGTTAATACATCATGAAA 59.105 34.615 25.07 0.00 43.57 2.69
3179 3527 6.430864 ACCATGGGTGTTAATACATCATGAA 58.569 36.000 25.07 0.00 43.57 2.57
3180 3528 6.012337 ACCATGGGTGTTAATACATCATGA 57.988 37.500 25.07 0.00 43.57 3.07
3181 3529 8.408043 AATACCATGGGTGTTAATACATCATG 57.592 34.615 18.09 20.52 42.23 3.07
3182 3530 8.448008 AGAATACCATGGGTGTTAATACATCAT 58.552 33.333 18.09 4.95 37.16 2.45
3183 3531 7.811282 AGAATACCATGGGTGTTAATACATCA 58.189 34.615 18.09 2.86 37.16 3.07
3184 3532 8.691661 AAGAATACCATGGGTGTTAATACATC 57.308 34.615 18.09 0.46 37.16 3.06
3185 3533 9.793259 CTAAGAATACCATGGGTGTTAATACAT 57.207 33.333 18.09 0.00 37.16 2.29
3186 3534 8.774183 ACTAAGAATACCATGGGTGTTAATACA 58.226 33.333 18.09 0.00 37.16 2.29
3187 3535 9.052759 CACTAAGAATACCATGGGTGTTAATAC 57.947 37.037 18.09 0.00 37.16 1.89
3188 3536 8.994500 TCACTAAGAATACCATGGGTGTTAATA 58.006 33.333 18.09 0.00 37.16 0.98
3189 3537 7.867921 TCACTAAGAATACCATGGGTGTTAAT 58.132 34.615 18.09 0.00 37.16 1.40
3190 3538 7.260387 TCACTAAGAATACCATGGGTGTTAA 57.740 36.000 18.09 0.00 37.16 2.01
3191 3539 6.877668 TCACTAAGAATACCATGGGTGTTA 57.122 37.500 18.09 8.93 37.16 2.41
3192 3540 5.772393 TCACTAAGAATACCATGGGTGTT 57.228 39.130 18.09 7.48 39.66 3.32
3193 3541 5.487488 TCTTCACTAAGAATACCATGGGTGT 59.513 40.000 18.09 0.00 38.81 4.16
3194 3542 5.989477 TCTTCACTAAGAATACCATGGGTG 58.011 41.667 18.09 11.64 38.81 4.61
3195 3543 6.636454 TTCTTCACTAAGAATACCATGGGT 57.364 37.500 18.09 4.30 44.85 4.51
3206 3554 6.035650 CCGCATTCGTATTTTCTTCACTAAGA 59.964 38.462 0.00 0.00 40.03 2.10
3207 3555 6.183360 ACCGCATTCGTATTTTCTTCACTAAG 60.183 38.462 0.00 0.00 0.00 2.18
3208 3556 5.640357 ACCGCATTCGTATTTTCTTCACTAA 59.360 36.000 0.00 0.00 0.00 2.24
3209 3557 5.172934 ACCGCATTCGTATTTTCTTCACTA 58.827 37.500 0.00 0.00 0.00 2.74
3210 3558 4.000988 ACCGCATTCGTATTTTCTTCACT 58.999 39.130 0.00 0.00 0.00 3.41
3211 3559 4.142988 TGACCGCATTCGTATTTTCTTCAC 60.143 41.667 0.00 0.00 0.00 3.18
3212 3560 3.997681 TGACCGCATTCGTATTTTCTTCA 59.002 39.130 0.00 0.00 0.00 3.02
3213 3561 4.593597 TGACCGCATTCGTATTTTCTTC 57.406 40.909 0.00 0.00 0.00 2.87
3214 3562 5.815740 AGTATGACCGCATTCGTATTTTCTT 59.184 36.000 0.00 0.00 35.94 2.52
3215 3563 5.357257 AGTATGACCGCATTCGTATTTTCT 58.643 37.500 0.00 0.00 35.94 2.52
3216 3564 5.652744 AGTATGACCGCATTCGTATTTTC 57.347 39.130 0.00 0.00 35.94 2.29
3217 3565 7.439955 TGAATAGTATGACCGCATTCGTATTTT 59.560 33.333 0.00 0.00 35.94 1.82
3218 3566 6.926826 TGAATAGTATGACCGCATTCGTATTT 59.073 34.615 0.00 0.00 35.94 1.40
3219 3567 6.452242 TGAATAGTATGACCGCATTCGTATT 58.548 36.000 0.00 0.00 35.94 1.89
3220 3568 6.020971 TGAATAGTATGACCGCATTCGTAT 57.979 37.500 0.00 0.00 35.94 3.06
3221 3569 5.441709 TGAATAGTATGACCGCATTCGTA 57.558 39.130 0.00 0.00 35.94 3.43
3222 3570 4.316205 TGAATAGTATGACCGCATTCGT 57.684 40.909 0.00 0.00 35.94 3.85
3223 3571 5.845985 AATGAATAGTATGACCGCATTCG 57.154 39.130 0.00 0.00 35.94 3.34
3224 3572 8.556194 TGTTTAATGAATAGTATGACCGCATTC 58.444 33.333 0.00 0.00 35.94 2.67
3225 3573 8.445275 TGTTTAATGAATAGTATGACCGCATT 57.555 30.769 0.00 0.00 35.94 3.56
3226 3574 7.715249 ACTGTTTAATGAATAGTATGACCGCAT 59.285 33.333 0.00 0.00 37.86 4.73
3227 3575 7.011016 CACTGTTTAATGAATAGTATGACCGCA 59.989 37.037 0.00 0.00 37.58 5.69
3228 3576 7.345192 CACTGTTTAATGAATAGTATGACCGC 58.655 38.462 0.00 0.00 37.58 5.68
3229 3577 7.224753 AGCACTGTTTAATGAATAGTATGACCG 59.775 37.037 0.00 0.00 37.58 4.79
3230 3578 8.438676 AGCACTGTTTAATGAATAGTATGACC 57.561 34.615 0.00 0.00 37.58 4.02
3263 3611 9.774742 GACAAAATCGAAGCTAATCAAAACTAT 57.225 29.630 0.00 0.00 0.00 2.12
3264 3612 8.779303 TGACAAAATCGAAGCTAATCAAAACTA 58.221 29.630 0.00 0.00 0.00 2.24
3265 3613 7.648142 TGACAAAATCGAAGCTAATCAAAACT 58.352 30.769 0.00 0.00 0.00 2.66
3266 3614 7.851822 TGACAAAATCGAAGCTAATCAAAAC 57.148 32.000 0.00 0.00 0.00 2.43
3267 3615 9.474920 AAATGACAAAATCGAAGCTAATCAAAA 57.525 25.926 0.00 0.00 0.00 2.44
3268 3616 9.474920 AAAATGACAAAATCGAAGCTAATCAAA 57.525 25.926 0.00 0.00 0.00 2.69
3269 3617 9.474920 AAAAATGACAAAATCGAAGCTAATCAA 57.525 25.926 0.00 0.00 0.00 2.57
3270 3618 8.914654 CAAAAATGACAAAATCGAAGCTAATCA 58.085 29.630 0.00 0.00 0.00 2.57
3271 3619 7.894753 GCAAAAATGACAAAATCGAAGCTAATC 59.105 33.333 0.00 0.00 0.00 1.75
3272 3620 7.148590 GGCAAAAATGACAAAATCGAAGCTAAT 60.149 33.333 0.00 0.00 0.00 1.73
3273 3621 6.145371 GGCAAAAATGACAAAATCGAAGCTAA 59.855 34.615 0.00 0.00 0.00 3.09
3274 3622 5.633182 GGCAAAAATGACAAAATCGAAGCTA 59.367 36.000 0.00 0.00 0.00 3.32
3275 3623 4.448732 GGCAAAAATGACAAAATCGAAGCT 59.551 37.500 0.00 0.00 0.00 3.74
3276 3624 4.377328 GGGCAAAAATGACAAAATCGAAGC 60.377 41.667 0.00 0.00 0.00 3.86
3277 3625 4.749099 TGGGCAAAAATGACAAAATCGAAG 59.251 37.500 0.00 0.00 0.00 3.79
3278 3626 4.697514 TGGGCAAAAATGACAAAATCGAA 58.302 34.783 0.00 0.00 0.00 3.71
3279 3627 4.038522 TCTGGGCAAAAATGACAAAATCGA 59.961 37.500 0.00 0.00 0.00 3.59
3280 3628 4.305769 TCTGGGCAAAAATGACAAAATCG 58.694 39.130 0.00 0.00 0.00 3.34
3281 3629 6.806388 AATCTGGGCAAAAATGACAAAATC 57.194 33.333 0.00 0.00 0.00 2.17
3282 3630 6.654582 GGTAATCTGGGCAAAAATGACAAAAT 59.345 34.615 0.00 0.00 0.00 1.82
3283 3631 5.994668 GGTAATCTGGGCAAAAATGACAAAA 59.005 36.000 0.00 0.00 0.00 2.44
3284 3632 5.070981 TGGTAATCTGGGCAAAAATGACAAA 59.929 36.000 0.00 0.00 0.00 2.83
3285 3633 4.590647 TGGTAATCTGGGCAAAAATGACAA 59.409 37.500 0.00 0.00 0.00 3.18
3286 3634 4.021544 GTGGTAATCTGGGCAAAAATGACA 60.022 41.667 0.00 0.00 0.00 3.58
3287 3635 4.494484 GTGGTAATCTGGGCAAAAATGAC 58.506 43.478 0.00 0.00 0.00 3.06
3288 3636 3.192422 CGTGGTAATCTGGGCAAAAATGA 59.808 43.478 0.00 0.00 0.00 2.57
3289 3637 3.510719 CGTGGTAATCTGGGCAAAAATG 58.489 45.455 0.00 0.00 0.00 2.32
3290 3638 2.495669 CCGTGGTAATCTGGGCAAAAAT 59.504 45.455 0.00 0.00 0.00 1.82
3291 3639 1.889829 CCGTGGTAATCTGGGCAAAAA 59.110 47.619 0.00 0.00 0.00 1.94
3292 3640 1.074084 TCCGTGGTAATCTGGGCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
3293 3641 0.693622 TCCGTGGTAATCTGGGCAAA 59.306 50.000 0.00 0.00 0.00 3.68
3294 3642 0.916086 ATCCGTGGTAATCTGGGCAA 59.084 50.000 0.00 0.00 0.00 4.52
3295 3643 0.180171 CATCCGTGGTAATCTGGGCA 59.820 55.000 0.00 0.00 0.00 5.36
3296 3644 0.180406 ACATCCGTGGTAATCTGGGC 59.820 55.000 0.00 0.00 0.00 5.36
3297 3645 1.484653 TCACATCCGTGGTAATCTGGG 59.515 52.381 0.00 0.00 43.79 4.45
3298 3646 2.979814 TCACATCCGTGGTAATCTGG 57.020 50.000 0.00 0.00 43.79 3.86
3299 3647 5.118990 AGAAATCACATCCGTGGTAATCTG 58.881 41.667 0.00 0.00 43.79 2.90
3300 3648 5.359194 AGAAATCACATCCGTGGTAATCT 57.641 39.130 0.00 0.00 43.79 2.40
3301 3649 5.276868 CGAAGAAATCACATCCGTGGTAATC 60.277 44.000 0.00 0.00 43.79 1.75
3302 3650 4.570772 CGAAGAAATCACATCCGTGGTAAT 59.429 41.667 0.00 0.00 43.79 1.89
3303 3651 3.930229 CGAAGAAATCACATCCGTGGTAA 59.070 43.478 0.00 0.00 43.79 2.85
3304 3652 3.056393 ACGAAGAAATCACATCCGTGGTA 60.056 43.478 0.00 0.00 43.79 3.25
3305 3653 2.289444 ACGAAGAAATCACATCCGTGGT 60.289 45.455 0.00 0.00 43.79 4.16
3306 3654 2.094258 CACGAAGAAATCACATCCGTGG 59.906 50.000 0.00 0.00 43.79 4.94
3307 3655 2.993220 TCACGAAGAAATCACATCCGTG 59.007 45.455 0.00 0.00 44.71 4.94
3308 3656 3.313012 TCACGAAGAAATCACATCCGT 57.687 42.857 0.00 0.00 0.00 4.69
3309 3657 4.661993 TTTCACGAAGAAATCACATCCG 57.338 40.909 0.00 0.00 41.17 4.18
3318 3666 5.407084 TCGCATATGAAGTTTCACGAAGAAA 59.593 36.000 6.97 0.00 43.71 2.52
3319 3667 4.926832 TCGCATATGAAGTTTCACGAAGAA 59.073 37.500 6.97 0.00 40.49 2.52
3320 3668 4.490743 TCGCATATGAAGTTTCACGAAGA 58.509 39.130 6.97 0.00 40.49 2.87
3321 3669 4.327357 ACTCGCATATGAAGTTTCACGAAG 59.673 41.667 6.97 1.12 40.49 3.79
3322 3670 4.242475 ACTCGCATATGAAGTTTCACGAA 58.758 39.130 6.97 0.00 40.49 3.85
3323 3671 3.845178 ACTCGCATATGAAGTTTCACGA 58.155 40.909 6.97 2.35 40.49 4.35
3324 3672 5.890110 ATACTCGCATATGAAGTTTCACG 57.110 39.130 6.97 0.00 40.49 4.35
3325 3673 6.129168 CGGTATACTCGCATATGAAGTTTCAC 60.129 42.308 6.97 7.42 40.49 3.18
3326 3674 5.918576 CGGTATACTCGCATATGAAGTTTCA 59.081 40.000 6.97 0.00 42.14 2.69
3327 3675 5.345202 CCGGTATACTCGCATATGAAGTTTC 59.655 44.000 6.97 3.70 0.00 2.78
3328 3676 5.221382 ACCGGTATACTCGCATATGAAGTTT 60.221 40.000 4.49 6.85 0.00 2.66
3329 3677 4.280174 ACCGGTATACTCGCATATGAAGTT 59.720 41.667 4.49 3.51 0.00 2.66
3330 3678 3.825014 ACCGGTATACTCGCATATGAAGT 59.175 43.478 4.49 11.22 0.00 3.01
3331 3679 4.436242 ACCGGTATACTCGCATATGAAG 57.564 45.455 4.49 5.46 0.00 3.02
3332 3680 4.278919 TCAACCGGTATACTCGCATATGAA 59.721 41.667 8.00 0.00 0.00 2.57
3333 3681 3.822167 TCAACCGGTATACTCGCATATGA 59.178 43.478 8.00 0.00 0.00 2.15
3334 3682 4.168922 TCAACCGGTATACTCGCATATG 57.831 45.455 8.00 0.00 0.00 1.78
3335 3683 5.401531 AATCAACCGGTATACTCGCATAT 57.598 39.130 8.00 0.00 0.00 1.78
3336 3684 4.859304 AATCAACCGGTATACTCGCATA 57.141 40.909 8.00 0.00 0.00 3.14
3337 3685 3.746045 AATCAACCGGTATACTCGCAT 57.254 42.857 8.00 0.00 0.00 4.73
3338 3686 3.530265 AAATCAACCGGTATACTCGCA 57.470 42.857 8.00 0.00 0.00 5.10
3339 3687 3.619929 ACAAAATCAACCGGTATACTCGC 59.380 43.478 8.00 0.00 0.00 5.03
3340 3688 8.752766 ATATACAAAATCAACCGGTATACTCG 57.247 34.615 8.00 4.92 31.80 4.18
3410 3758 8.402472 CGCACCCTTTATGAATAGTAAATTCAA 58.598 33.333 4.67 0.00 40.84 2.69
3411 3759 7.468084 GCGCACCCTTTATGAATAGTAAATTCA 60.468 37.037 0.30 3.13 41.59 2.57
3412 3760 6.856426 GCGCACCCTTTATGAATAGTAAATTC 59.144 38.462 0.30 0.00 0.00 2.17
3413 3761 6.320164 TGCGCACCCTTTATGAATAGTAAATT 59.680 34.615 5.66 0.00 0.00 1.82
3414 3762 5.825679 TGCGCACCCTTTATGAATAGTAAAT 59.174 36.000 5.66 0.00 0.00 1.40
3415 3763 5.065474 GTGCGCACCCTTTATGAATAGTAAA 59.935 40.000 30.12 0.00 0.00 2.01
3416 3764 4.573201 GTGCGCACCCTTTATGAATAGTAA 59.427 41.667 30.12 0.00 0.00 2.24
3417 3765 4.124238 GTGCGCACCCTTTATGAATAGTA 58.876 43.478 30.12 0.00 0.00 1.82
3418 3766 2.943033 GTGCGCACCCTTTATGAATAGT 59.057 45.455 30.12 0.00 0.00 2.12
3419 3767 2.032894 CGTGCGCACCCTTTATGAATAG 60.033 50.000 33.23 11.65 0.00 1.73
3420 3768 1.937223 CGTGCGCACCCTTTATGAATA 59.063 47.619 33.23 0.00 0.00 1.75
3421 3769 0.732571 CGTGCGCACCCTTTATGAAT 59.267 50.000 33.23 0.00 0.00 2.57
3422 3770 1.917782 GCGTGCGCACCCTTTATGAA 61.918 55.000 33.23 0.00 41.49 2.57
3423 3771 2.395360 GCGTGCGCACCCTTTATGA 61.395 57.895 33.23 0.00 41.49 2.15
3424 3772 2.100216 GCGTGCGCACCCTTTATG 59.900 61.111 33.23 18.80 41.49 1.90
3434 3782 4.759096 GAACATGGGTGCGTGCGC 62.759 66.667 9.85 9.85 42.35 6.09
3435 3783 3.353029 TGAACATGGGTGCGTGCG 61.353 61.111 0.00 0.00 0.00 5.34
3436 3784 2.255252 GTGAACATGGGTGCGTGC 59.745 61.111 0.00 0.00 0.00 5.34
3437 3785 1.451337 TTGGTGAACATGGGTGCGTG 61.451 55.000 0.00 0.00 0.00 5.34
3438 3786 0.753479 TTTGGTGAACATGGGTGCGT 60.753 50.000 0.00 0.00 0.00 5.24
3439 3787 0.602562 ATTTGGTGAACATGGGTGCG 59.397 50.000 0.00 0.00 0.00 5.34
3440 3788 1.066929 GGATTTGGTGAACATGGGTGC 60.067 52.381 0.00 0.00 0.00 5.01
3441 3789 1.202114 CGGATTTGGTGAACATGGGTG 59.798 52.381 0.00 0.00 0.00 4.61
3442 3790 1.544724 CGGATTTGGTGAACATGGGT 58.455 50.000 0.00 0.00 0.00 4.51
3443 3791 0.173255 GCGGATTTGGTGAACATGGG 59.827 55.000 0.00 0.00 0.00 4.00
3444 3792 0.173255 GGCGGATTTGGTGAACATGG 59.827 55.000 0.00 0.00 0.00 3.66
3445 3793 1.133025 GAGGCGGATTTGGTGAACATG 59.867 52.381 0.00 0.00 0.00 3.21
3446 3794 1.463674 GAGGCGGATTTGGTGAACAT 58.536 50.000 0.00 0.00 0.00 2.71
3447 3795 0.608035 GGAGGCGGATTTGGTGAACA 60.608 55.000 0.00 0.00 0.00 3.18
3448 3796 1.313091 GGGAGGCGGATTTGGTGAAC 61.313 60.000 0.00 0.00 0.00 3.18
3449 3797 1.001393 GGGAGGCGGATTTGGTGAA 60.001 57.895 0.00 0.00 0.00 3.18
3450 3798 1.784301 TTGGGAGGCGGATTTGGTGA 61.784 55.000 0.00 0.00 0.00 4.02
3451 3799 0.684153 ATTGGGAGGCGGATTTGGTG 60.684 55.000 0.00 0.00 0.00 4.17
3452 3800 0.041090 AATTGGGAGGCGGATTTGGT 59.959 50.000 0.00 0.00 0.00 3.67
3453 3801 0.746659 GAATTGGGAGGCGGATTTGG 59.253 55.000 0.00 0.00 0.00 3.28
3454 3802 1.767759 AGAATTGGGAGGCGGATTTG 58.232 50.000 0.00 0.00 0.00 2.32
3455 3803 2.532250 AAGAATTGGGAGGCGGATTT 57.468 45.000 0.00 0.00 0.00 2.17
3456 3804 2.532250 AAAGAATTGGGAGGCGGATT 57.468 45.000 0.00 0.00 0.00 3.01
3457 3805 2.532250 AAAAGAATTGGGAGGCGGAT 57.468 45.000 0.00 0.00 0.00 4.18
3458 3806 2.302587 AAAAAGAATTGGGAGGCGGA 57.697 45.000 0.00 0.00 0.00 5.54
3459 3807 4.736126 AATAAAAAGAATTGGGAGGCGG 57.264 40.909 0.00 0.00 0.00 6.13
3460 3808 9.626045 GAATATAATAAAAAGAATTGGGAGGCG 57.374 33.333 0.00 0.00 0.00 5.52
3650 4246 0.326595 TAGCTCATGACCCCGCAAAA 59.673 50.000 7.34 0.00 0.00 2.44
3651 4247 0.392461 GTAGCTCATGACCCCGCAAA 60.392 55.000 7.34 0.00 0.00 3.68
3652 4248 1.220749 GTAGCTCATGACCCCGCAA 59.779 57.895 7.34 0.00 0.00 4.85
3653 4249 2.731571 GGTAGCTCATGACCCCGCA 61.732 63.158 7.34 0.00 0.00 5.69
3654 4250 2.109181 GGTAGCTCATGACCCCGC 59.891 66.667 0.00 0.00 0.00 6.13
3655 4251 1.043116 TCAGGTAGCTCATGACCCCG 61.043 60.000 0.00 0.00 36.27 5.73
3656 4252 1.428869 ATCAGGTAGCTCATGACCCC 58.571 55.000 0.00 0.00 39.67 4.95
3657 4253 3.643792 AGTAATCAGGTAGCTCATGACCC 59.356 47.826 0.00 0.00 39.67 4.46
3658 4254 4.586841 AGAGTAATCAGGTAGCTCATGACC 59.413 45.833 0.00 0.00 39.67 4.02
3659 4255 5.534654 AGAGAGTAATCAGGTAGCTCATGAC 59.465 44.000 0.00 0.00 39.67 3.06
3660 4256 5.700183 AGAGAGTAATCAGGTAGCTCATGA 58.300 41.667 0.00 0.00 41.11 3.07
3661 4257 7.701539 ATAGAGAGTAATCAGGTAGCTCATG 57.298 40.000 0.00 0.00 0.00 3.07
3662 4258 9.238368 GTAATAGAGAGTAATCAGGTAGCTCAT 57.762 37.037 0.00 0.00 0.00 2.90
3663 4259 8.218488 TGTAATAGAGAGTAATCAGGTAGCTCA 58.782 37.037 0.00 0.00 0.00 4.26
3664 4260 8.624367 TGTAATAGAGAGTAATCAGGTAGCTC 57.376 38.462 0.00 0.00 0.00 4.09
3665 4261 8.998277 TTGTAATAGAGAGTAATCAGGTAGCT 57.002 34.615 0.00 0.00 0.00 3.32
3666 4262 9.632807 CATTGTAATAGAGAGTAATCAGGTAGC 57.367 37.037 0.00 0.00 0.00 3.58
3709 4305 6.993079 TGACTGCTACTTCATGTTTCTAGAA 58.007 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.