Multiple sequence alignment - TraesCS6D01G136700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G136700 chr6D 100.000 4306 0 0 1 4306 105535627 105539932 0.000000e+00 7952.0
1 TraesCS6D01G136700 chr6B 92.344 2926 130 24 1354 4240 191749870 191752740 0.000000e+00 4076.0
2 TraesCS6D01G136700 chr6B 96.567 466 14 2 865 1329 191749428 191749892 0.000000e+00 771.0
3 TraesCS6D01G136700 chr6A 92.952 2568 111 25 1700 4240 127568802 127571326 0.000000e+00 3675.0
4 TraesCS6D01G136700 chr6A 89.229 817 38 12 873 1673 127568021 127568803 0.000000e+00 976.0
5 TraesCS6D01G136700 chr6A 94.444 252 11 3 1 250 230739983 230739733 6.750000e-103 385.0
6 TraesCS6D01G136700 chr6A 95.798 238 10 0 1 238 474423196 474423433 6.750000e-103 385.0
7 TraesCS6D01G136700 chr6A 94.545 55 3 0 4186 4240 53811485 53811539 7.670000e-13 86.1
8 TraesCS6D01G136700 chr6A 97.872 47 1 0 4235 4281 127571348 127571394 9.920000e-12 82.4
9 TraesCS6D01G136700 chr5B 90.000 560 51 5 242 798 503307908 503307351 0.000000e+00 719.0
10 TraesCS6D01G136700 chr5B 96.639 238 8 0 1 238 163632866 163633103 3.120000e-106 396.0
11 TraesCS6D01G136700 chr5B 95.798 238 10 0 1 238 170242885 170243122 6.750000e-103 385.0
12 TraesCS6D01G136700 chr3D 86.330 534 60 7 242 763 55916419 55916951 1.740000e-158 569.0
13 TraesCS6D01G136700 chr7A 85.252 556 69 10 251 794 477220441 477220995 1.050000e-155 560.0
14 TraesCS6D01G136700 chr7A 95.062 243 12 0 1 243 274933065 274932823 2.430000e-102 383.0
15 TraesCS6D01G136700 chr1A 96.218 238 9 0 1 238 426104376 426104613 1.450000e-104 390.0
16 TraesCS6D01G136700 chr1A 94.545 55 3 0 4186 4240 554488069 554488015 7.670000e-13 86.1
17 TraesCS6D01G136700 chr7B 95.798 238 10 0 1 238 323943064 323942827 6.750000e-103 385.0
18 TraesCS6D01G136700 chr7B 95.798 238 10 0 1 238 516153289 516153052 6.750000e-103 385.0
19 TraesCS6D01G136700 chr4B 95.798 238 10 0 1 238 100451267 100451030 6.750000e-103 385.0
20 TraesCS6D01G136700 chr3B 87.805 287 32 3 510 794 478643160 478642875 2.480000e-87 333.0
21 TraesCS6D01G136700 chr1B 73.923 418 86 17 270 681 392149616 392149216 3.470000e-31 147.0
22 TraesCS6D01G136700 chr1B 81.102 127 22 2 242 368 553998211 553998087 2.740000e-17 100.0
23 TraesCS6D01G136700 chr4D 91.304 69 4 1 4062 4130 241035118 241035184 4.580000e-15 93.5
24 TraesCS6D01G136700 chrUn 94.545 55 3 0 4186 4240 379171979 379172033 7.670000e-13 86.1
25 TraesCS6D01G136700 chrUn 94.545 55 3 0 4186 4240 422744502 422744448 7.670000e-13 86.1
26 TraesCS6D01G136700 chrUn 94.545 55 3 0 4186 4240 424637892 424637946 7.670000e-13 86.1
27 TraesCS6D01G136700 chr1D 94.545 55 3 0 4186 4240 244189976 244189922 7.670000e-13 86.1
28 TraesCS6D01G136700 chr1D 94.545 55 3 0 4186 4240 244757168 244757114 7.670000e-13 86.1
29 TraesCS6D01G136700 chr1D 94.545 55 3 0 4186 4240 254465448 254465394 7.670000e-13 86.1
30 TraesCS6D01G136700 chr3A 81.111 90 17 0 278 367 739016157 739016068 5.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G136700 chr6D 105535627 105539932 4305 False 7952.0 7952 100.0000 1 4306 1 chr6D.!!$F1 4305
1 TraesCS6D01G136700 chr6B 191749428 191752740 3312 False 2423.5 4076 94.4555 865 4240 2 chr6B.!!$F1 3375
2 TraesCS6D01G136700 chr6A 127568021 127571394 3373 False 1577.8 3675 93.3510 873 4281 3 chr6A.!!$F3 3408
3 TraesCS6D01G136700 chr5B 503307351 503307908 557 True 719.0 719 90.0000 242 798 1 chr5B.!!$R1 556
4 TraesCS6D01G136700 chr3D 55916419 55916951 532 False 569.0 569 86.3300 242 763 1 chr3D.!!$F1 521
5 TraesCS6D01G136700 chr7A 477220441 477220995 554 False 560.0 560 85.2520 251 794 1 chr7A.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.030501 TTATGAGTCGGGGTCCCCAT 60.031 55.0 27.45 14.4 45.83 4.00 F
794 807 0.037734 CGTGGAGGGGCTTTTTACCT 59.962 55.0 0.00 0.0 37.31 3.08 F
1365 1381 0.034896 ATCCGCGACTGTTCAGGTTT 59.965 50.0 8.23 0.0 0.00 3.27 F
1367 1383 0.041312 CCGCGACTGTTCAGGTTTTG 60.041 55.0 8.23 0.0 0.00 2.44 F
1505 1550 0.321122 AGGCAGCACACTAGCACTTC 60.321 55.0 0.00 0.0 36.85 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1362 0.034896 AAACCTGAACAGTCGCGGAT 59.965 50.000 6.13 0.0 0.00 4.18 R
2365 2421 2.031616 CCATCATCGCCATCCGCT 59.968 61.111 0.00 0.0 36.73 5.52 R
3031 3090 2.955614 GCATTGAGCAGCAAGACAAAT 58.044 42.857 0.00 0.0 44.79 2.32 R
3243 3302 3.340034 TCGTTAAAGGCATTACCCACAG 58.660 45.455 0.00 0.0 40.58 3.66 R
3416 3477 7.383102 AGTTGTTTCATATGGATCTGAACAC 57.617 36.000 2.13 0.0 31.41 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.175133 CAGGTGGCATGGGTTCTAC 57.825 57.895 0.00 0.00 0.00 2.59
19 20 0.620556 CAGGTGGCATGGGTTCTACT 59.379 55.000 0.00 0.00 0.00 2.57
20 21 1.004745 CAGGTGGCATGGGTTCTACTT 59.995 52.381 0.00 0.00 0.00 2.24
21 22 2.238646 CAGGTGGCATGGGTTCTACTTA 59.761 50.000 0.00 0.00 0.00 2.24
22 23 3.117888 CAGGTGGCATGGGTTCTACTTAT 60.118 47.826 0.00 0.00 0.00 1.73
23 24 3.136626 AGGTGGCATGGGTTCTACTTATC 59.863 47.826 0.00 0.00 0.00 1.75
24 25 3.131396 GTGGCATGGGTTCTACTTATCG 58.869 50.000 0.00 0.00 0.00 2.92
25 26 3.035363 TGGCATGGGTTCTACTTATCGA 58.965 45.455 0.00 0.00 0.00 3.59
26 27 3.181469 TGGCATGGGTTCTACTTATCGAC 60.181 47.826 0.00 0.00 0.00 4.20
27 28 3.050619 GCATGGGTTCTACTTATCGACG 58.949 50.000 0.00 0.00 0.00 5.12
28 29 3.243301 GCATGGGTTCTACTTATCGACGA 60.243 47.826 0.00 0.00 0.00 4.20
29 30 4.735578 GCATGGGTTCTACTTATCGACGAA 60.736 45.833 0.00 0.00 0.00 3.85
30 31 4.627611 TGGGTTCTACTTATCGACGAAG 57.372 45.455 0.00 7.24 0.00 3.79
31 32 4.264253 TGGGTTCTACTTATCGACGAAGA 58.736 43.478 14.25 0.00 0.00 2.87
32 33 4.885907 TGGGTTCTACTTATCGACGAAGAT 59.114 41.667 14.25 0.00 34.79 2.40
33 34 5.359009 TGGGTTCTACTTATCGACGAAGATT 59.641 40.000 14.25 0.00 32.39 2.40
34 35 6.127535 TGGGTTCTACTTATCGACGAAGATTT 60.128 38.462 14.25 0.00 32.39 2.17
35 36 6.417339 GGGTTCTACTTATCGACGAAGATTTC 59.583 42.308 14.25 0.00 32.39 2.17
36 37 6.417339 GGTTCTACTTATCGACGAAGATTTCC 59.583 42.308 14.25 0.29 32.39 3.13
37 38 5.745514 TCTACTTATCGACGAAGATTTCCG 58.254 41.667 14.25 0.00 32.39 4.30
38 39 3.114065 ACTTATCGACGAAGATTTCCGC 58.886 45.455 14.25 0.00 32.39 5.54
39 40 3.181489 ACTTATCGACGAAGATTTCCGCT 60.181 43.478 14.25 0.00 32.39 5.52
40 41 1.560923 ATCGACGAAGATTTCCGCTG 58.439 50.000 0.00 0.00 0.00 5.18
41 42 1.076533 TCGACGAAGATTTCCGCTGC 61.077 55.000 0.00 0.00 0.00 5.25
42 43 1.078759 CGACGAAGATTTCCGCTGCT 61.079 55.000 0.00 0.00 0.00 4.24
43 44 1.079503 GACGAAGATTTCCGCTGCTT 58.920 50.000 0.00 0.00 0.00 3.91
44 45 0.798776 ACGAAGATTTCCGCTGCTTG 59.201 50.000 0.00 0.00 0.00 4.01
45 46 0.798776 CGAAGATTTCCGCTGCTTGT 59.201 50.000 0.00 0.00 0.00 3.16
46 47 1.464687 CGAAGATTTCCGCTGCTTGTG 60.465 52.381 0.00 0.00 0.00 3.33
47 48 1.537202 GAAGATTTCCGCTGCTTGTGT 59.463 47.619 0.00 0.00 0.00 3.72
48 49 1.609208 AGATTTCCGCTGCTTGTGTT 58.391 45.000 0.00 0.00 0.00 3.32
49 50 1.956477 AGATTTCCGCTGCTTGTGTTT 59.044 42.857 0.00 0.00 0.00 2.83
50 51 2.362077 AGATTTCCGCTGCTTGTGTTTT 59.638 40.909 0.00 0.00 0.00 2.43
51 52 3.568007 AGATTTCCGCTGCTTGTGTTTTA 59.432 39.130 0.00 0.00 0.00 1.52
52 53 4.218417 AGATTTCCGCTGCTTGTGTTTTAT 59.782 37.500 0.00 0.00 0.00 1.40
53 54 3.552604 TTCCGCTGCTTGTGTTTTATC 57.447 42.857 0.00 0.00 0.00 1.75
54 55 2.778299 TCCGCTGCTTGTGTTTTATCT 58.222 42.857 0.00 0.00 0.00 1.98
55 56 2.483877 TCCGCTGCTTGTGTTTTATCTG 59.516 45.455 0.00 0.00 0.00 2.90
56 57 2.483877 CCGCTGCTTGTGTTTTATCTGA 59.516 45.455 0.00 0.00 0.00 3.27
57 58 3.127548 CCGCTGCTTGTGTTTTATCTGAT 59.872 43.478 0.00 0.00 0.00 2.90
58 59 4.093514 CGCTGCTTGTGTTTTATCTGATG 58.906 43.478 0.00 0.00 0.00 3.07
59 60 4.378770 CGCTGCTTGTGTTTTATCTGATGT 60.379 41.667 0.00 0.00 0.00 3.06
60 61 5.464168 GCTGCTTGTGTTTTATCTGATGTT 58.536 37.500 0.00 0.00 0.00 2.71
61 62 5.570589 GCTGCTTGTGTTTTATCTGATGTTC 59.429 40.000 0.00 0.00 0.00 3.18
62 63 6.631971 TGCTTGTGTTTTATCTGATGTTCA 57.368 33.333 0.00 0.00 0.00 3.18
63 64 6.671190 TGCTTGTGTTTTATCTGATGTTCAG 58.329 36.000 0.00 0.00 45.59 3.02
64 65 5.570589 GCTTGTGTTTTATCTGATGTTCAGC 59.429 40.000 0.00 0.00 43.95 4.26
65 66 5.627499 TGTGTTTTATCTGATGTTCAGCC 57.373 39.130 0.00 0.00 43.95 4.85
66 67 4.458989 TGTGTTTTATCTGATGTTCAGCCC 59.541 41.667 0.00 0.00 43.95 5.19
67 68 4.702131 GTGTTTTATCTGATGTTCAGCCCT 59.298 41.667 0.00 0.00 43.95 5.19
68 69 5.183904 GTGTTTTATCTGATGTTCAGCCCTT 59.816 40.000 0.00 0.00 43.95 3.95
69 70 5.183713 TGTTTTATCTGATGTTCAGCCCTTG 59.816 40.000 0.00 0.00 43.95 3.61
70 71 4.842531 TTATCTGATGTTCAGCCCTTGA 57.157 40.909 0.00 0.00 43.95 3.02
71 72 2.775911 TCTGATGTTCAGCCCTTGAG 57.224 50.000 0.00 0.00 43.95 3.02
72 73 1.280133 TCTGATGTTCAGCCCTTGAGG 59.720 52.381 0.00 0.00 43.95 3.86
88 89 7.067496 CCCTTGAGGCTTTATCTATGTAAGA 57.933 40.000 0.00 0.00 39.02 2.10
89 90 6.931840 CCCTTGAGGCTTTATCTATGTAAGAC 59.068 42.308 0.00 0.00 36.93 3.01
90 91 7.202047 CCCTTGAGGCTTTATCTATGTAAGACT 60.202 40.741 0.00 0.00 39.89 3.24
91 92 8.207545 CCTTGAGGCTTTATCTATGTAAGACTT 58.792 37.037 0.00 0.00 37.38 3.01
92 93 8.948631 TTGAGGCTTTATCTATGTAAGACTTG 57.051 34.615 0.00 0.00 37.38 3.16
93 94 8.306313 TGAGGCTTTATCTATGTAAGACTTGA 57.694 34.615 0.00 0.00 37.38 3.02
94 95 8.198109 TGAGGCTTTATCTATGTAAGACTTGAC 58.802 37.037 0.00 0.00 37.38 3.18
95 96 7.501844 AGGCTTTATCTATGTAAGACTTGACC 58.498 38.462 0.00 0.00 33.51 4.02
96 97 7.125811 AGGCTTTATCTATGTAAGACTTGACCA 59.874 37.037 0.00 0.00 33.51 4.02
97 98 7.934120 GGCTTTATCTATGTAAGACTTGACCAT 59.066 37.037 0.00 0.58 36.93 3.55
98 99 9.982651 GCTTTATCTATGTAAGACTTGACCATA 57.017 33.333 0.00 1.69 36.93 2.74
103 104 8.938883 ATCTATGTAAGACTTGACCATAATGGT 58.061 33.333 0.00 0.00 45.86 3.55
120 121 9.706691 CCATAATGGTCGTAGTTTATGTAAGAT 57.293 33.333 0.00 0.00 32.61 2.40
122 123 9.706691 ATAATGGTCGTAGTTTATGTAAGATGG 57.293 33.333 0.00 0.00 0.00 3.51
123 124 6.534475 TGGTCGTAGTTTATGTAAGATGGT 57.466 37.500 0.00 0.00 0.00 3.55
124 125 7.643569 TGGTCGTAGTTTATGTAAGATGGTA 57.356 36.000 0.00 0.00 0.00 3.25
125 126 8.241497 TGGTCGTAGTTTATGTAAGATGGTAT 57.759 34.615 0.00 0.00 0.00 2.73
126 127 8.139350 TGGTCGTAGTTTATGTAAGATGGTATG 58.861 37.037 0.00 0.00 0.00 2.39
127 128 8.139989 GGTCGTAGTTTATGTAAGATGGTATGT 58.860 37.037 0.00 0.00 0.00 2.29
139 140 9.374711 TGTAAGATGGTATGTATGGATGTAAGA 57.625 33.333 0.00 0.00 0.00 2.10
140 141 9.640963 GTAAGATGGTATGTATGGATGTAAGAC 57.359 37.037 0.00 0.00 0.00 3.01
141 142 8.497910 AAGATGGTATGTATGGATGTAAGACT 57.502 34.615 0.00 0.00 0.00 3.24
142 143 8.128322 AGATGGTATGTATGGATGTAAGACTC 57.872 38.462 0.00 0.00 0.00 3.36
143 144 7.952930 AGATGGTATGTATGGATGTAAGACTCT 59.047 37.037 0.00 0.00 0.00 3.24
144 145 7.914427 TGGTATGTATGGATGTAAGACTCTT 57.086 36.000 0.00 0.00 0.00 2.85
145 146 7.726216 TGGTATGTATGGATGTAAGACTCTTG 58.274 38.462 1.17 0.00 0.00 3.02
146 147 7.344612 TGGTATGTATGGATGTAAGACTCTTGT 59.655 37.037 1.17 0.00 0.00 3.16
147 148 8.204836 GGTATGTATGGATGTAAGACTCTTGTT 58.795 37.037 1.17 0.00 0.00 2.83
151 152 9.817809 TGTATGGATGTAAGACTCTTGTTATTC 57.182 33.333 1.17 0.00 0.00 1.75
152 153 9.817809 GTATGGATGTAAGACTCTTGTTATTCA 57.182 33.333 1.17 0.00 0.00 2.57
153 154 8.954950 ATGGATGTAAGACTCTTGTTATTCAG 57.045 34.615 1.17 0.00 0.00 3.02
154 155 7.907389 TGGATGTAAGACTCTTGTTATTCAGT 58.093 34.615 1.17 0.00 0.00 3.41
155 156 8.375506 TGGATGTAAGACTCTTGTTATTCAGTT 58.624 33.333 1.17 0.00 0.00 3.16
156 157 9.220767 GGATGTAAGACTCTTGTTATTCAGTTT 57.779 33.333 1.17 0.00 0.00 2.66
159 160 9.261180 TGTAAGACTCTTGTTATTCAGTTTCTG 57.739 33.333 1.17 0.00 0.00 3.02
160 161 9.262358 GTAAGACTCTTGTTATTCAGTTTCTGT 57.738 33.333 1.17 0.00 32.61 3.41
161 162 7.721286 AGACTCTTGTTATTCAGTTTCTGTG 57.279 36.000 0.00 0.00 32.61 3.66
162 163 7.275920 AGACTCTTGTTATTCAGTTTCTGTGT 58.724 34.615 0.00 0.00 32.61 3.72
163 164 7.225538 AGACTCTTGTTATTCAGTTTCTGTGTG 59.774 37.037 0.00 0.00 32.61 3.82
164 165 6.823689 ACTCTTGTTATTCAGTTTCTGTGTGT 59.176 34.615 0.00 0.00 32.61 3.72
165 166 7.336931 ACTCTTGTTATTCAGTTTCTGTGTGTT 59.663 33.333 0.00 0.00 32.61 3.32
166 167 7.693952 TCTTGTTATTCAGTTTCTGTGTGTTC 58.306 34.615 0.00 0.00 32.61 3.18
167 168 6.993786 TGTTATTCAGTTTCTGTGTGTTCA 57.006 33.333 0.00 0.00 32.61 3.18
168 169 7.015226 TGTTATTCAGTTTCTGTGTGTTCAG 57.985 36.000 0.00 0.00 36.85 3.02
169 170 6.597672 TGTTATTCAGTTTCTGTGTGTTCAGT 59.402 34.615 0.00 0.00 36.85 3.41
170 171 4.944962 TTCAGTTTCTGTGTGTTCAGTG 57.055 40.909 0.00 0.00 36.85 3.66
171 172 4.200838 TCAGTTTCTGTGTGTTCAGTGA 57.799 40.909 0.00 0.00 36.85 3.41
172 173 4.183865 TCAGTTTCTGTGTGTTCAGTGAG 58.816 43.478 0.00 0.00 36.85 3.51
173 174 2.939103 AGTTTCTGTGTGTTCAGTGAGC 59.061 45.455 0.00 0.00 36.85 4.26
174 175 2.677836 GTTTCTGTGTGTTCAGTGAGCA 59.322 45.455 5.45 5.45 36.85 4.26
175 176 2.916702 TCTGTGTGTTCAGTGAGCAT 57.083 45.000 13.12 0.00 36.85 3.79
176 177 3.198409 TCTGTGTGTTCAGTGAGCATT 57.802 42.857 13.12 0.00 36.85 3.56
177 178 2.874086 TCTGTGTGTTCAGTGAGCATTG 59.126 45.455 13.12 4.46 36.85 2.82
178 179 2.874086 CTGTGTGTTCAGTGAGCATTGA 59.126 45.455 13.12 0.00 0.00 2.57
179 180 3.479489 TGTGTGTTCAGTGAGCATTGAT 58.521 40.909 13.12 0.00 0.00 2.57
180 181 3.499537 TGTGTGTTCAGTGAGCATTGATC 59.500 43.478 13.12 0.51 0.00 2.92
181 182 3.750130 GTGTGTTCAGTGAGCATTGATCT 59.250 43.478 13.12 0.00 0.00 2.75
182 183 3.999001 TGTGTTCAGTGAGCATTGATCTC 59.001 43.478 13.12 0.00 0.00 2.75
183 184 4.252073 GTGTTCAGTGAGCATTGATCTCT 58.748 43.478 13.12 2.01 0.00 3.10
184 185 4.093115 GTGTTCAGTGAGCATTGATCTCTG 59.907 45.833 21.84 21.84 39.77 3.35
185 186 3.538634 TCAGTGAGCATTGATCTCTGG 57.461 47.619 25.26 12.68 39.18 3.86
186 187 2.169978 TCAGTGAGCATTGATCTCTGGG 59.830 50.000 25.26 8.81 39.18 4.45
187 188 2.169978 CAGTGAGCATTGATCTCTGGGA 59.830 50.000 20.68 0.00 36.39 4.37
188 189 3.047115 AGTGAGCATTGATCTCTGGGAT 58.953 45.455 5.75 0.00 37.37 3.85
199 200 2.092323 TCTCTGGGATCACTGTACACG 58.908 52.381 0.00 0.00 0.00 4.49
200 201 1.819288 CTCTGGGATCACTGTACACGT 59.181 52.381 0.00 0.00 0.00 4.49
201 202 1.544246 TCTGGGATCACTGTACACGTG 59.456 52.381 15.48 15.48 0.00 4.49
202 203 0.037697 TGGGATCACTGTACACGTGC 60.038 55.000 17.22 0.00 32.54 5.34
203 204 0.037697 GGGATCACTGTACACGTGCA 60.038 55.000 17.22 5.50 32.54 4.57
204 205 1.405526 GGGATCACTGTACACGTGCAT 60.406 52.381 17.22 0.00 32.54 3.96
205 206 2.346803 GGATCACTGTACACGTGCATT 58.653 47.619 17.22 0.00 32.54 3.56
206 207 2.348666 GGATCACTGTACACGTGCATTC 59.651 50.000 17.22 4.22 32.54 2.67
207 208 1.414378 TCACTGTACACGTGCATTCG 58.586 50.000 17.22 3.13 32.54 3.34
208 209 0.438445 CACTGTACACGTGCATTCGG 59.562 55.000 17.22 10.84 34.94 4.30
209 210 0.032952 ACTGTACACGTGCATTCGGT 59.967 50.000 17.22 11.47 34.94 4.69
210 211 0.438445 CTGTACACGTGCATTCGGTG 59.562 55.000 17.22 5.33 34.94 4.94
211 212 0.032267 TGTACACGTGCATTCGGTGA 59.968 50.000 17.22 0.00 34.94 4.02
212 213 1.337354 TGTACACGTGCATTCGGTGAT 60.337 47.619 17.22 0.00 34.94 3.06
213 214 1.323534 GTACACGTGCATTCGGTGATC 59.676 52.381 17.22 0.00 34.94 2.92
214 215 0.037326 ACACGTGCATTCGGTGATCT 60.037 50.000 17.22 0.00 34.94 2.75
215 216 0.647410 CACGTGCATTCGGTGATCTC 59.353 55.000 0.82 0.00 34.94 2.75
216 217 0.802222 ACGTGCATTCGGTGATCTCG 60.802 55.000 1.59 0.00 34.94 4.04
217 218 0.525455 CGTGCATTCGGTGATCTCGA 60.525 55.000 7.46 7.46 34.62 4.04
218 219 0.924090 GTGCATTCGGTGATCTCGAC 59.076 55.000 10.38 2.52 36.30 4.20
219 220 0.817654 TGCATTCGGTGATCTCGACT 59.182 50.000 10.38 4.24 36.30 4.18
220 221 1.204704 TGCATTCGGTGATCTCGACTT 59.795 47.619 10.38 1.19 36.30 3.01
221 222 2.425668 TGCATTCGGTGATCTCGACTTA 59.574 45.455 10.38 0.00 36.30 2.24
222 223 3.068165 TGCATTCGGTGATCTCGACTTAT 59.932 43.478 10.38 1.55 36.30 1.73
223 224 3.426859 GCATTCGGTGATCTCGACTTATG 59.573 47.826 10.38 11.96 36.30 1.90
224 225 4.793028 GCATTCGGTGATCTCGACTTATGA 60.793 45.833 17.77 4.78 36.30 2.15
225 226 4.553756 TTCGGTGATCTCGACTTATGAG 57.446 45.455 10.38 0.00 36.30 2.90
226 227 3.542648 TCGGTGATCTCGACTTATGAGT 58.457 45.455 7.46 0.00 39.32 3.41
235 236 0.751452 GACTTATGAGTCGGGGTCCC 59.249 60.000 0.00 0.00 42.60 4.46
236 237 0.690077 ACTTATGAGTCGGGGTCCCC 60.690 60.000 18.34 18.34 41.09 4.81
237 238 0.689745 CTTATGAGTCGGGGTCCCCA 60.690 60.000 27.45 11.28 45.83 4.96
238 239 0.030501 TTATGAGTCGGGGTCCCCAT 60.031 55.000 27.45 14.40 45.83 4.00
239 240 0.861854 TATGAGTCGGGGTCCCCATA 59.138 55.000 27.45 13.35 45.83 2.74
240 241 0.193574 ATGAGTCGGGGTCCCCATAT 59.806 55.000 27.45 11.19 45.83 1.78
255 256 0.726827 CATATCACCGTTGCGTTGCT 59.273 50.000 0.00 0.00 0.00 3.91
268 269 0.315869 CGTTGCTGTTTCTTCGCGTT 60.316 50.000 5.77 0.00 0.00 4.84
383 384 5.126707 GGAAGAGACCATCAATCATTTGCTT 59.873 40.000 0.00 0.00 32.61 3.91
446 447 3.278574 CCTAGCAATGAATTGACCGGAA 58.721 45.455 9.46 0.00 40.14 4.30
462 463 0.249155 GGAATGGATACCGAACGCGA 60.249 55.000 15.93 0.00 40.82 5.87
469 470 3.054878 GGATACCGAACGCGAATACAAT 58.945 45.455 15.93 0.00 40.82 2.71
524 526 2.408333 GATGGGGCAAAGGACATCG 58.592 57.895 0.00 0.00 31.57 3.84
583 585 2.632377 CACCGACATGCCATAGTCTTT 58.368 47.619 0.00 0.00 32.68 2.52
732 745 3.888583 CGGGAGGAGTTAGTCTTAGTCT 58.111 50.000 0.00 0.00 0.00 3.24
756 769 0.251033 GTGGGTGGAGTTGGGGTTAC 60.251 60.000 0.00 0.00 0.00 2.50
787 800 1.420532 TTACCAACGTGGAGGGGCTT 61.421 55.000 10.46 0.00 40.96 4.35
794 807 0.037734 CGTGGAGGGGCTTTTTACCT 59.962 55.000 0.00 0.00 37.31 3.08
800 813 3.277142 AGGGGCTTTTTACCTCATACG 57.723 47.619 0.00 0.00 0.00 3.06
801 814 2.574824 AGGGGCTTTTTACCTCATACGT 59.425 45.455 0.00 0.00 0.00 3.57
802 815 3.776417 AGGGGCTTTTTACCTCATACGTA 59.224 43.478 0.00 0.00 0.00 3.57
803 816 3.873361 GGGGCTTTTTACCTCATACGTAC 59.127 47.826 0.00 0.00 0.00 3.67
804 817 4.506758 GGGCTTTTTACCTCATACGTACA 58.493 43.478 0.00 0.00 0.00 2.90
805 818 4.330894 GGGCTTTTTACCTCATACGTACAC 59.669 45.833 0.00 0.00 0.00 2.90
806 819 5.173664 GGCTTTTTACCTCATACGTACACT 58.826 41.667 0.00 0.00 0.00 3.55
807 820 5.290400 GGCTTTTTACCTCATACGTACACTC 59.710 44.000 0.00 0.00 0.00 3.51
808 821 5.004156 GCTTTTTACCTCATACGTACACTCG 59.996 44.000 0.00 0.00 0.00 4.18
809 822 5.627499 TTTTACCTCATACGTACACTCGT 57.373 39.130 0.00 0.00 45.97 4.18
810 823 4.604843 TTACCTCATACGTACACTCGTG 57.395 45.455 0.00 0.00 43.93 4.35
811 824 1.131883 ACCTCATACGTACACTCGTGC 59.868 52.381 0.00 0.00 43.93 5.34
818 831 2.671451 CGTACACTCGTGCGTATTTG 57.329 50.000 0.00 0.00 44.97 2.32
819 832 2.244251 CGTACACTCGTGCGTATTTGA 58.756 47.619 0.00 0.00 44.97 2.69
820 833 2.657848 CGTACACTCGTGCGTATTTGAA 59.342 45.455 0.00 0.00 44.97 2.69
821 834 3.119956 CGTACACTCGTGCGTATTTGAAA 59.880 43.478 0.00 0.00 44.97 2.69
822 835 4.375205 CGTACACTCGTGCGTATTTGAAAA 60.375 41.667 0.00 0.00 44.97 2.29
823 836 4.539509 ACACTCGTGCGTATTTGAAAAA 57.460 36.364 0.00 0.00 0.00 1.94
853 866 8.447924 AATATTCAGAGTTGTCATGGAATCTG 57.552 34.615 12.66 12.66 36.38 2.90
854 867 5.488262 TTCAGAGTTGTCATGGAATCTGA 57.512 39.130 15.66 15.66 40.90 3.27
855 868 5.488262 TCAGAGTTGTCATGGAATCTGAA 57.512 39.130 16.65 6.38 39.98 3.02
856 869 5.240891 TCAGAGTTGTCATGGAATCTGAAC 58.759 41.667 16.65 0.00 39.98 3.18
857 870 4.092529 CAGAGTTGTCATGGAATCTGAACG 59.907 45.833 13.24 0.00 37.03 3.95
858 871 3.997021 GAGTTGTCATGGAATCTGAACGT 59.003 43.478 0.00 0.00 0.00 3.99
859 872 4.389374 AGTTGTCATGGAATCTGAACGTT 58.611 39.130 0.00 0.00 0.00 3.99
860 873 4.821805 AGTTGTCATGGAATCTGAACGTTT 59.178 37.500 0.46 0.00 0.00 3.60
861 874 5.995282 AGTTGTCATGGAATCTGAACGTTTA 59.005 36.000 0.46 0.00 0.00 2.01
862 875 6.147821 AGTTGTCATGGAATCTGAACGTTTAG 59.852 38.462 13.56 13.56 0.00 1.85
863 876 4.935205 TGTCATGGAATCTGAACGTTTAGG 59.065 41.667 18.77 5.18 0.00 2.69
922 935 1.527696 GCAATTCGCACGACATCTTG 58.472 50.000 0.00 0.00 41.79 3.02
1229 1245 0.841289 TTTTGACTTCCCACCGAGGT 59.159 50.000 0.00 0.00 32.50 3.85
1300 1316 6.591935 TCGGATCAGTTTAGATTTGGCTATT 58.408 36.000 0.00 0.00 0.00 1.73
1323 1339 2.092646 TGTTACTGTTGCAGGTTCAGGT 60.093 45.455 12.37 0.00 35.51 4.00
1324 1340 2.949644 GTTACTGTTGCAGGTTCAGGTT 59.050 45.455 12.37 0.00 35.51 3.50
1325 1341 2.143876 ACTGTTGCAGGTTCAGGTTT 57.856 45.000 12.37 0.00 35.51 3.27
1326 1342 2.456577 ACTGTTGCAGGTTCAGGTTTT 58.543 42.857 12.37 0.00 35.51 2.43
1327 1343 2.166254 ACTGTTGCAGGTTCAGGTTTTG 59.834 45.455 12.37 0.00 35.51 2.44
1328 1344 2.426738 CTGTTGCAGGTTCAGGTTTTGA 59.573 45.455 0.00 0.00 0.00 2.69
1329 1345 3.030291 TGTTGCAGGTTCAGGTTTTGAT 58.970 40.909 0.00 0.00 35.27 2.57
1330 1346 3.068024 TGTTGCAGGTTCAGGTTTTGATC 59.932 43.478 0.00 0.00 35.27 2.92
1331 1347 3.228188 TGCAGGTTCAGGTTTTGATCT 57.772 42.857 0.00 0.00 35.27 2.75
1332 1348 2.886523 TGCAGGTTCAGGTTTTGATCTG 59.113 45.455 0.00 0.00 38.96 2.90
1333 1349 2.229784 GCAGGTTCAGGTTTTGATCTGG 59.770 50.000 0.00 0.00 37.65 3.86
1334 1350 2.229784 CAGGTTCAGGTTTTGATCTGGC 59.770 50.000 0.00 0.00 35.54 4.85
1335 1351 2.108952 AGGTTCAGGTTTTGATCTGGCT 59.891 45.455 0.00 0.00 35.27 4.75
1336 1352 3.330701 AGGTTCAGGTTTTGATCTGGCTA 59.669 43.478 0.00 0.00 35.27 3.93
1337 1353 3.440522 GGTTCAGGTTTTGATCTGGCTAC 59.559 47.826 0.00 0.00 35.27 3.58
1338 1354 4.327680 GTTCAGGTTTTGATCTGGCTACT 58.672 43.478 0.00 0.00 35.27 2.57
1339 1355 4.207891 TCAGGTTTTGATCTGGCTACTC 57.792 45.455 0.00 0.00 0.00 2.59
1340 1356 3.840666 TCAGGTTTTGATCTGGCTACTCT 59.159 43.478 0.00 0.00 0.00 3.24
1341 1357 3.937706 CAGGTTTTGATCTGGCTACTCTG 59.062 47.826 0.00 0.00 0.00 3.35
1342 1358 2.680339 GGTTTTGATCTGGCTACTCTGC 59.320 50.000 0.00 0.00 0.00 4.26
1343 1359 3.604582 GTTTTGATCTGGCTACTCTGCT 58.395 45.455 0.00 0.00 0.00 4.24
1344 1360 3.533606 TTTGATCTGGCTACTCTGCTC 57.466 47.619 0.00 0.00 0.00 4.26
1345 1361 1.407936 TGATCTGGCTACTCTGCTCC 58.592 55.000 0.00 0.00 0.00 4.70
1346 1362 1.342374 TGATCTGGCTACTCTGCTCCA 60.342 52.381 0.00 0.00 0.00 3.86
1347 1363 1.969923 GATCTGGCTACTCTGCTCCAT 59.030 52.381 0.00 0.00 0.00 3.41
1348 1364 1.407936 TCTGGCTACTCTGCTCCATC 58.592 55.000 0.00 0.00 0.00 3.51
1349 1365 0.392336 CTGGCTACTCTGCTCCATCC 59.608 60.000 0.00 0.00 0.00 3.51
1350 1366 1.365633 GGCTACTCTGCTCCATCCG 59.634 63.158 0.00 0.00 0.00 4.18
1351 1367 1.300542 GCTACTCTGCTCCATCCGC 60.301 63.158 0.00 0.00 0.00 5.54
1352 1368 1.007964 CTACTCTGCTCCATCCGCG 60.008 63.158 0.00 0.00 0.00 6.46
1353 1369 1.448119 CTACTCTGCTCCATCCGCGA 61.448 60.000 8.23 0.00 0.00 5.87
1354 1370 1.725557 TACTCTGCTCCATCCGCGAC 61.726 60.000 8.23 0.00 0.00 5.19
1355 1371 2.755876 TCTGCTCCATCCGCGACT 60.756 61.111 8.23 0.00 0.00 4.18
1356 1372 2.584418 CTGCTCCATCCGCGACTG 60.584 66.667 8.23 3.97 0.00 3.51
1357 1373 3.362399 CTGCTCCATCCGCGACTGT 62.362 63.158 8.23 0.00 0.00 3.55
1358 1374 2.125512 GCTCCATCCGCGACTGTT 60.126 61.111 8.23 0.00 0.00 3.16
1359 1375 2.167861 GCTCCATCCGCGACTGTTC 61.168 63.158 8.23 0.00 0.00 3.18
1360 1376 1.215382 CTCCATCCGCGACTGTTCA 59.785 57.895 8.23 0.00 0.00 3.18
1361 1377 0.803768 CTCCATCCGCGACTGTTCAG 60.804 60.000 8.23 0.00 0.00 3.02
1362 1378 1.811266 CCATCCGCGACTGTTCAGG 60.811 63.158 8.23 0.00 0.00 3.86
1363 1379 1.079819 CATCCGCGACTGTTCAGGT 60.080 57.895 8.23 0.00 0.00 4.00
1364 1380 0.670546 CATCCGCGACTGTTCAGGTT 60.671 55.000 8.23 0.00 0.00 3.50
1365 1381 0.034896 ATCCGCGACTGTTCAGGTTT 59.965 50.000 8.23 0.00 0.00 3.27
1366 1382 0.179067 TCCGCGACTGTTCAGGTTTT 60.179 50.000 8.23 0.00 0.00 2.43
1367 1383 0.041312 CCGCGACTGTTCAGGTTTTG 60.041 55.000 8.23 0.00 0.00 2.44
1368 1384 0.934496 CGCGACTGTTCAGGTTTTGA 59.066 50.000 0.00 0.00 0.00 2.69
1369 1385 1.070577 CGCGACTGTTCAGGTTTTGAG 60.071 52.381 0.00 0.00 37.07 3.02
1370 1386 1.940613 GCGACTGTTCAGGTTTTGAGT 59.059 47.619 4.82 0.00 37.07 3.41
1371 1387 2.032808 GCGACTGTTCAGGTTTTGAGTC 60.033 50.000 4.82 0.00 37.07 3.36
1471 1516 5.368145 TCATAGCTAATTTGGTCTTGCGAT 58.632 37.500 0.00 0.00 0.00 4.58
1485 1530 4.674211 GTCTTGCGATACGTTCACCTATAC 59.326 45.833 0.00 0.00 0.00 1.47
1503 1548 1.004080 CAGGCAGCACACTAGCACT 60.004 57.895 0.00 0.00 36.85 4.40
1504 1549 0.604780 CAGGCAGCACACTAGCACTT 60.605 55.000 0.00 0.00 36.85 3.16
1505 1550 0.321122 AGGCAGCACACTAGCACTTC 60.321 55.000 0.00 0.00 36.85 3.01
1506 1551 0.603707 GGCAGCACACTAGCACTTCA 60.604 55.000 0.00 0.00 36.85 3.02
1507 1552 1.229428 GCAGCACACTAGCACTTCAA 58.771 50.000 0.00 0.00 36.85 2.69
1508 1553 1.808945 GCAGCACACTAGCACTTCAAT 59.191 47.619 0.00 0.00 36.85 2.57
1628 1684 5.674525 TCTTTGAAACAGTCACACAGATCT 58.325 37.500 0.00 0.00 35.39 2.75
1671 1727 1.785041 CTTTGGGTGTGCAGGTCGTG 61.785 60.000 0.00 0.00 0.00 4.35
1720 1776 5.359756 TGGTATCATCTGCTTGTGTCATAC 58.640 41.667 0.00 0.00 0.00 2.39
1728 1784 1.476891 GCTTGTGTCATACTCCGAGGA 59.523 52.381 0.00 0.00 0.00 3.71
1756 1812 5.277857 TCTTGCTTATGTAGGGTTAGCTC 57.722 43.478 0.00 0.00 33.15 4.09
1776 1832 5.663106 AGCTCATTGTCAAGATTACCTCCTA 59.337 40.000 0.00 0.00 0.00 2.94
1983 2039 9.903682 CTATGAAACATTCAAACTTCAACTGAT 57.096 29.630 0.00 0.00 43.95 2.90
2246 2302 5.880887 ACTGACGAGTGATGACTAACTATCA 59.119 40.000 0.00 0.00 30.16 2.15
2365 2421 8.291191 TCAATGAATTGCTACCATTATTCACA 57.709 30.769 0.00 0.00 39.15 3.58
2670 2729 0.531974 ATAGCCCACCAATACGTGCG 60.532 55.000 0.00 0.00 32.10 5.34
2689 2748 3.120130 TGCGAAGGTTAATTTAGTTGGCG 60.120 43.478 0.00 0.00 0.00 5.69
2690 2749 3.422655 CGAAGGTTAATTTAGTTGGCGC 58.577 45.455 0.00 0.00 0.00 6.53
2723 2782 9.760660 CTTTACTTCCTCAAATTATCTTTCACG 57.239 33.333 0.00 0.00 0.00 4.35
2773 2832 4.755266 TCTTATACTCTGCTTCCCCAAC 57.245 45.455 0.00 0.00 0.00 3.77
2871 2930 4.933505 TCATGCACCTTGACATTTCAAA 57.066 36.364 0.00 0.00 41.34 2.69
2886 2945 9.605275 TGACATTTCAAATTTGAACAATAACCA 57.395 25.926 28.78 17.85 45.99 3.67
2940 2999 7.078228 GCATACAAGCCTTTATTCCTATTTCG 58.922 38.462 0.00 0.00 0.00 3.46
2966 3025 3.754965 AGTGCTTTCCATGTTAAGCTCA 58.245 40.909 22.14 7.44 45.37 4.26
3024 3083 2.305635 TGCCAGTCTGAATCAAGCCTTA 59.694 45.455 0.00 0.00 0.00 2.69
3031 3090 6.205464 CAGTCTGAATCAAGCCTTAAAGTTCA 59.795 38.462 0.00 0.00 0.00 3.18
3068 3127 0.983467 TGCAGGACACCAATGCTCTA 59.017 50.000 0.00 0.00 40.62 2.43
3308 3367 3.942829 TCTTCGGCATCTTGACTGATTT 58.057 40.909 0.00 0.00 0.00 2.17
3312 3371 1.820519 GGCATCTTGACTGATTTGCCA 59.179 47.619 6.86 0.00 36.27 4.92
3322 3381 7.541783 TCTTGACTGATTTGCCAAATAATTTCG 59.458 33.333 1.95 0.00 0.00 3.46
3323 3382 6.098679 TGACTGATTTGCCAAATAATTTCGG 58.901 36.000 1.95 0.00 0.00 4.30
3353 3412 1.135141 TGTTGCGTGCTTTTGAGCTTT 60.135 42.857 0.00 0.00 35.49 3.51
3357 3416 1.927710 GCGTGCTTTTGAGCTTTCCAG 60.928 52.381 0.00 0.00 35.49 3.86
3364 3423 6.094048 GTGCTTTTGAGCTTTCCAGATGTATA 59.906 38.462 0.00 0.00 35.49 1.47
3399 3458 4.713321 AGAGGCTTTATTGAATGTGGCATT 59.287 37.500 0.00 0.00 0.00 3.56
3416 3477 7.042950 TGTGGCATTGAGAAATCCATAAAATG 58.957 34.615 0.00 0.00 0.00 2.32
3474 3535 8.893727 GTGATATAACTGCAATGTTAAGAACCT 58.106 33.333 2.99 0.00 36.22 3.50
3518 3579 5.619757 GCATTCTGAATCCGTGTGAAATTCA 60.620 40.000 0.00 0.00 37.14 2.57
3520 3581 5.611796 TCTGAATCCGTGTGAAATTCAAG 57.388 39.130 0.00 0.00 38.54 3.02
3538 3599 3.718434 TCAAGCATCTGGGATCATACCTT 59.282 43.478 0.00 0.00 0.00 3.50
3576 3637 1.974343 CCGGGGCAATGGTTTTCGA 60.974 57.895 0.00 0.00 0.00 3.71
3607 3668 1.331214 ACGGACCGAAACCAACTCTA 58.669 50.000 23.38 0.00 0.00 2.43
3648 3709 4.832823 AGTAACCTCCTTTGATGGTTTTGG 59.167 41.667 1.89 0.00 43.07 3.28
3680 3741 0.389817 TTCGTGCGAAGTCTGGATGG 60.390 55.000 2.65 0.00 0.00 3.51
3694 3756 4.394300 GTCTGGATGGTTGATCTTGACTTG 59.606 45.833 0.00 0.00 33.95 3.16
3706 3768 1.118965 TTGACTTGTCGAGGGCCTGA 61.119 55.000 12.95 6.13 0.00 3.86
3911 3975 9.995003 AGTTAATCAAATGCTTCAAACCAAATA 57.005 25.926 0.00 0.00 0.00 1.40
3913 3977 6.949578 ATCAAATGCTTCAAACCAAATACG 57.050 33.333 0.00 0.00 0.00 3.06
3914 3978 5.226396 TCAAATGCTTCAAACCAAATACGG 58.774 37.500 0.00 0.00 0.00 4.02
3915 3979 4.864704 AATGCTTCAAACCAAATACGGT 57.135 36.364 0.00 0.00 42.71 4.83
3916 3980 3.634568 TGCTTCAAACCAAATACGGTG 57.365 42.857 0.00 0.00 39.95 4.94
3917 3981 2.952978 TGCTTCAAACCAAATACGGTGT 59.047 40.909 0.00 0.00 39.95 4.16
3918 3982 3.243234 TGCTTCAAACCAAATACGGTGTG 60.243 43.478 0.00 0.00 44.58 3.82
3919 3983 3.305110 CTTCAAACCAAATACGGTGTGC 58.695 45.455 0.00 0.00 43.13 4.57
3920 3984 2.577700 TCAAACCAAATACGGTGTGCT 58.422 42.857 0.00 0.00 43.13 4.40
3921 3985 2.292016 TCAAACCAAATACGGTGTGCTG 59.708 45.455 0.00 0.00 43.13 4.41
3922 3986 1.975660 AACCAAATACGGTGTGCTGT 58.024 45.000 0.00 0.00 39.95 4.40
3923 3987 1.975660 ACCAAATACGGTGTGCTGTT 58.024 45.000 0.00 0.00 38.07 3.16
3924 3988 2.303175 ACCAAATACGGTGTGCTGTTT 58.697 42.857 0.00 0.00 38.07 2.83
3925 3989 2.691011 ACCAAATACGGTGTGCTGTTTT 59.309 40.909 0.00 0.00 38.07 2.43
3926 3990 3.131400 ACCAAATACGGTGTGCTGTTTTT 59.869 39.130 0.00 0.00 38.07 1.94
4043 4107 6.387041 TGTATAGTCTGGAAGTGATAACCG 57.613 41.667 0.00 0.00 33.76 4.44
4055 4119 1.299541 GATAACCGTCATGGGTGCAG 58.700 55.000 0.00 0.00 38.98 4.41
4114 4178 8.423906 TCAGTCTTTTGATTAGAGTAGAGGTT 57.576 34.615 0.00 0.00 0.00 3.50
4125 4189 0.248296 GTAGAGGTTGCGAGAGAGCG 60.248 60.000 0.00 0.00 40.67 5.03
4148 4234 5.221009 CGGAGCTTAGTCTTAATAGTCGGTT 60.221 44.000 0.00 0.00 0.00 4.44
4160 4246 0.461339 AGTCGGTTGCGACTGTTGTT 60.461 50.000 12.78 0.00 46.06 2.83
4171 4257 3.671928 GCGACTGTTGTTATAGTCAACGT 59.328 43.478 13.97 13.84 45.33 3.99
4272 4385 6.054941 CAGTGGATATGTACATGCCAAGTTA 58.945 40.000 25.04 3.93 31.50 2.24
4281 4394 4.701956 ACATGCCAAGTTACATTACAGC 57.298 40.909 0.00 0.00 0.00 4.40
4282 4395 4.078537 ACATGCCAAGTTACATTACAGCA 58.921 39.130 0.00 0.00 0.00 4.41
4283 4396 4.082787 ACATGCCAAGTTACATTACAGCAC 60.083 41.667 0.00 0.00 0.00 4.40
4284 4397 3.481453 TGCCAAGTTACATTACAGCACA 58.519 40.909 0.00 0.00 0.00 4.57
4285 4398 3.885901 TGCCAAGTTACATTACAGCACAA 59.114 39.130 0.00 0.00 0.00 3.33
4286 4399 4.339530 TGCCAAGTTACATTACAGCACAAA 59.660 37.500 0.00 0.00 0.00 2.83
4287 4400 5.010516 TGCCAAGTTACATTACAGCACAAAT 59.989 36.000 0.00 0.00 0.00 2.32
4288 4401 6.207614 TGCCAAGTTACATTACAGCACAAATA 59.792 34.615 0.00 0.00 0.00 1.40
4289 4402 6.747280 GCCAAGTTACATTACAGCACAAATAG 59.253 38.462 0.00 0.00 0.00 1.73
4290 4403 6.747280 CCAAGTTACATTACAGCACAAATAGC 59.253 38.462 0.00 0.00 0.00 2.97
4291 4404 7.362056 CCAAGTTACATTACAGCACAAATAGCT 60.362 37.037 0.00 0.00 44.62 3.32
4292 4405 8.664798 CAAGTTACATTACAGCACAAATAGCTA 58.335 33.333 0.00 0.00 41.14 3.32
4293 4406 8.425577 AGTTACATTACAGCACAAATAGCTAG 57.574 34.615 0.00 0.00 41.14 3.42
4294 4407 7.495934 AGTTACATTACAGCACAAATAGCTAGG 59.504 37.037 0.00 0.00 41.14 3.02
4295 4408 4.576463 ACATTACAGCACAAATAGCTAGGC 59.424 41.667 0.00 0.00 41.14 3.93
4296 4409 2.787473 ACAGCACAAATAGCTAGGCA 57.213 45.000 0.00 0.00 41.14 4.75
4297 4410 3.287867 ACAGCACAAATAGCTAGGCAT 57.712 42.857 0.00 0.00 41.14 4.40
4298 4411 3.209410 ACAGCACAAATAGCTAGGCATC 58.791 45.455 0.00 0.00 41.14 3.91
4299 4412 3.208594 CAGCACAAATAGCTAGGCATCA 58.791 45.455 0.00 0.00 41.14 3.07
4300 4413 3.003068 CAGCACAAATAGCTAGGCATCAC 59.997 47.826 0.00 0.00 41.14 3.06
4301 4414 2.032549 GCACAAATAGCTAGGCATCACG 60.033 50.000 0.00 0.00 0.00 4.35
4302 4415 2.032549 CACAAATAGCTAGGCATCACGC 60.033 50.000 0.00 0.00 41.28 5.34
4303 4416 2.158900 ACAAATAGCTAGGCATCACGCT 60.159 45.455 0.00 0.00 41.91 5.07
4304 4417 3.069586 ACAAATAGCTAGGCATCACGCTA 59.930 43.478 0.00 0.00 41.91 4.26
4305 4418 4.058124 CAAATAGCTAGGCATCACGCTAA 58.942 43.478 0.00 0.00 41.91 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.620556 AGTAGAACCCATGCCACCTG 59.379 55.000 0.00 0.00 0.00 4.00
1 2 1.372501 AAGTAGAACCCATGCCACCT 58.627 50.000 0.00 0.00 0.00 4.00
2 3 3.477530 GATAAGTAGAACCCATGCCACC 58.522 50.000 0.00 0.00 0.00 4.61
3 4 3.131396 CGATAAGTAGAACCCATGCCAC 58.869 50.000 0.00 0.00 0.00 5.01
4 5 3.035363 TCGATAAGTAGAACCCATGCCA 58.965 45.455 0.00 0.00 0.00 4.92
5 6 3.391049 GTCGATAAGTAGAACCCATGCC 58.609 50.000 0.00 0.00 0.00 4.40
7 8 4.563337 TCGTCGATAAGTAGAACCCATG 57.437 45.455 0.00 0.00 0.00 3.66
8 9 4.885907 TCTTCGTCGATAAGTAGAACCCAT 59.114 41.667 0.00 0.00 0.00 4.00
9 10 4.264253 TCTTCGTCGATAAGTAGAACCCA 58.736 43.478 0.00 0.00 0.00 4.51
10 11 4.889832 TCTTCGTCGATAAGTAGAACCC 57.110 45.455 0.00 0.00 0.00 4.11
11 12 6.417339 GGAAATCTTCGTCGATAAGTAGAACC 59.583 42.308 0.00 0.00 0.00 3.62
12 13 6.140422 CGGAAATCTTCGTCGATAAGTAGAAC 59.860 42.308 0.00 0.00 0.00 3.01
13 14 6.197276 CGGAAATCTTCGTCGATAAGTAGAA 58.803 40.000 0.00 0.26 0.00 2.10
14 15 5.745514 CGGAAATCTTCGTCGATAAGTAGA 58.254 41.667 0.00 0.00 0.00 2.59
15 16 4.379204 GCGGAAATCTTCGTCGATAAGTAG 59.621 45.833 0.00 0.00 0.00 2.57
16 17 4.036027 AGCGGAAATCTTCGTCGATAAGTA 59.964 41.667 0.00 0.06 0.00 2.24
17 18 3.114065 GCGGAAATCTTCGTCGATAAGT 58.886 45.455 0.00 0.00 0.00 2.24
18 19 3.180584 CAGCGGAAATCTTCGTCGATAAG 59.819 47.826 0.00 4.54 0.00 1.73
19 20 3.113322 CAGCGGAAATCTTCGTCGATAA 58.887 45.455 0.00 0.00 0.00 1.75
20 21 2.727777 CAGCGGAAATCTTCGTCGATA 58.272 47.619 0.00 0.00 0.00 2.92
21 22 1.560923 CAGCGGAAATCTTCGTCGAT 58.439 50.000 0.00 0.00 0.00 3.59
22 23 1.076533 GCAGCGGAAATCTTCGTCGA 61.077 55.000 0.00 0.00 0.00 4.20
23 24 1.078759 AGCAGCGGAAATCTTCGTCG 61.079 55.000 0.00 0.00 0.00 5.12
24 25 1.079503 AAGCAGCGGAAATCTTCGTC 58.920 50.000 0.00 0.00 0.00 4.20
25 26 0.798776 CAAGCAGCGGAAATCTTCGT 59.201 50.000 0.00 0.00 0.00 3.85
26 27 0.798776 ACAAGCAGCGGAAATCTTCG 59.201 50.000 0.00 0.00 0.00 3.79
27 28 1.537202 ACACAAGCAGCGGAAATCTTC 59.463 47.619 0.00 0.00 0.00 2.87
28 29 1.609208 ACACAAGCAGCGGAAATCTT 58.391 45.000 0.00 0.00 0.00 2.40
29 30 1.609208 AACACAAGCAGCGGAAATCT 58.391 45.000 0.00 0.00 0.00 2.40
30 31 2.422276 AAACACAAGCAGCGGAAATC 57.578 45.000 0.00 0.00 0.00 2.17
31 32 2.888834 AAAACACAAGCAGCGGAAAT 57.111 40.000 0.00 0.00 0.00 2.17
32 33 3.568007 AGATAAAACACAAGCAGCGGAAA 59.432 39.130 0.00 0.00 0.00 3.13
33 34 3.058293 CAGATAAAACACAAGCAGCGGAA 60.058 43.478 0.00 0.00 0.00 4.30
34 35 2.483877 CAGATAAAACACAAGCAGCGGA 59.516 45.455 0.00 0.00 0.00 5.54
35 36 2.483877 TCAGATAAAACACAAGCAGCGG 59.516 45.455 0.00 0.00 0.00 5.52
36 37 3.811722 TCAGATAAAACACAAGCAGCG 57.188 42.857 0.00 0.00 0.00 5.18
37 38 5.051891 ACATCAGATAAAACACAAGCAGC 57.948 39.130 0.00 0.00 0.00 5.25
38 39 6.671190 TGAACATCAGATAAAACACAAGCAG 58.329 36.000 0.00 0.00 0.00 4.24
39 40 6.631971 TGAACATCAGATAAAACACAAGCA 57.368 33.333 0.00 0.00 0.00 3.91
53 54 1.747709 CCTCAAGGGCTGAACATCAG 58.252 55.000 3.00 3.00 46.90 2.90
54 55 3.963733 CCTCAAGGGCTGAACATCA 57.036 52.632 0.00 0.00 32.17 3.07
64 65 6.931840 GTCTTACATAGATAAAGCCTCAAGGG 59.068 42.308 0.00 0.00 34.79 3.95
65 66 7.731054 AGTCTTACATAGATAAAGCCTCAAGG 58.269 38.462 0.00 0.00 34.79 3.61
66 67 9.039870 CAAGTCTTACATAGATAAAGCCTCAAG 57.960 37.037 0.00 0.00 34.79 3.02
67 68 8.758829 TCAAGTCTTACATAGATAAAGCCTCAA 58.241 33.333 0.00 0.00 34.79 3.02
68 69 8.198109 GTCAAGTCTTACATAGATAAAGCCTCA 58.802 37.037 0.00 0.00 34.79 3.86
69 70 7.654116 GGTCAAGTCTTACATAGATAAAGCCTC 59.346 40.741 0.00 0.00 34.79 4.70
70 71 7.125811 TGGTCAAGTCTTACATAGATAAAGCCT 59.874 37.037 0.00 0.00 34.79 4.58
71 72 7.272978 TGGTCAAGTCTTACATAGATAAAGCC 58.727 38.462 0.00 0.00 34.79 4.35
72 73 8.894768 ATGGTCAAGTCTTACATAGATAAAGC 57.105 34.615 0.00 0.00 34.79 3.51
94 95 9.706691 ATCTTACATAAACTACGACCATTATGG 57.293 33.333 10.08 10.08 45.02 2.74
96 97 9.706691 CCATCTTACATAAACTACGACCATTAT 57.293 33.333 0.00 0.00 0.00 1.28
97 98 8.698210 ACCATCTTACATAAACTACGACCATTA 58.302 33.333 0.00 0.00 0.00 1.90
98 99 7.562135 ACCATCTTACATAAACTACGACCATT 58.438 34.615 0.00 0.00 0.00 3.16
99 100 7.120923 ACCATCTTACATAAACTACGACCAT 57.879 36.000 0.00 0.00 0.00 3.55
100 101 6.534475 ACCATCTTACATAAACTACGACCA 57.466 37.500 0.00 0.00 0.00 4.02
101 102 8.139989 ACATACCATCTTACATAAACTACGACC 58.860 37.037 0.00 0.00 0.00 4.79
113 114 9.374711 TCTTACATCCATACATACCATCTTACA 57.625 33.333 0.00 0.00 0.00 2.41
114 115 9.640963 GTCTTACATCCATACATACCATCTTAC 57.359 37.037 0.00 0.00 0.00 2.34
115 116 9.601810 AGTCTTACATCCATACATACCATCTTA 57.398 33.333 0.00 0.00 0.00 2.10
116 117 8.497910 AGTCTTACATCCATACATACCATCTT 57.502 34.615 0.00 0.00 0.00 2.40
117 118 7.952930 AGAGTCTTACATCCATACATACCATCT 59.047 37.037 0.00 0.00 0.00 2.90
118 119 8.128322 AGAGTCTTACATCCATACATACCATC 57.872 38.462 0.00 0.00 0.00 3.51
119 120 8.370940 CAAGAGTCTTACATCCATACATACCAT 58.629 37.037 4.74 0.00 0.00 3.55
120 121 7.344612 ACAAGAGTCTTACATCCATACATACCA 59.655 37.037 4.74 0.00 0.00 3.25
121 122 7.727181 ACAAGAGTCTTACATCCATACATACC 58.273 38.462 4.74 0.00 0.00 2.73
125 126 9.817809 GAATAACAAGAGTCTTACATCCATACA 57.182 33.333 4.74 0.00 0.00 2.29
126 127 9.817809 TGAATAACAAGAGTCTTACATCCATAC 57.182 33.333 4.74 0.00 0.00 2.39
128 129 8.543774 ACTGAATAACAAGAGTCTTACATCCAT 58.456 33.333 4.74 0.00 0.00 3.41
129 130 7.907389 ACTGAATAACAAGAGTCTTACATCCA 58.093 34.615 4.74 0.00 0.00 3.41
130 131 8.779354 AACTGAATAACAAGAGTCTTACATCC 57.221 34.615 4.74 0.00 0.00 3.51
133 134 9.261180 CAGAAACTGAATAACAAGAGTCTTACA 57.739 33.333 4.74 0.00 32.44 2.41
134 135 9.262358 ACAGAAACTGAATAACAAGAGTCTTAC 57.738 33.333 4.74 0.00 35.18 2.34
135 136 9.261180 CACAGAAACTGAATAACAAGAGTCTTA 57.739 33.333 4.74 0.00 35.18 2.10
136 137 7.770897 ACACAGAAACTGAATAACAAGAGTCTT 59.229 33.333 0.00 0.00 35.18 3.01
137 138 7.225538 CACACAGAAACTGAATAACAAGAGTCT 59.774 37.037 5.76 0.00 35.18 3.24
138 139 7.011482 ACACACAGAAACTGAATAACAAGAGTC 59.989 37.037 5.76 0.00 35.18 3.36
139 140 6.823689 ACACACAGAAACTGAATAACAAGAGT 59.176 34.615 5.76 0.00 35.18 3.24
140 141 7.251704 ACACACAGAAACTGAATAACAAGAG 57.748 36.000 5.76 0.00 35.18 2.85
141 142 7.335673 TGAACACACAGAAACTGAATAACAAGA 59.664 33.333 5.76 0.00 35.18 3.02
142 143 7.471721 TGAACACACAGAAACTGAATAACAAG 58.528 34.615 5.76 0.00 35.18 3.16
143 144 7.120579 ACTGAACACACAGAAACTGAATAACAA 59.879 33.333 5.76 0.00 40.63 2.83
144 145 6.597672 ACTGAACACACAGAAACTGAATAACA 59.402 34.615 5.76 0.00 40.63 2.41
145 146 6.907212 CACTGAACACACAGAAACTGAATAAC 59.093 38.462 5.76 0.00 40.63 1.89
146 147 6.821160 TCACTGAACACACAGAAACTGAATAA 59.179 34.615 5.76 0.00 40.63 1.40
147 148 6.345298 TCACTGAACACACAGAAACTGAATA 58.655 36.000 5.76 0.00 40.63 1.75
148 149 5.185454 TCACTGAACACACAGAAACTGAAT 58.815 37.500 5.76 0.00 40.63 2.57
149 150 4.574892 TCACTGAACACACAGAAACTGAA 58.425 39.130 5.76 0.00 40.63 3.02
150 151 4.183865 CTCACTGAACACACAGAAACTGA 58.816 43.478 5.76 0.00 40.63 3.41
151 152 3.242543 GCTCACTGAACACACAGAAACTG 60.243 47.826 0.00 0.00 40.63 3.16
152 153 2.939103 GCTCACTGAACACACAGAAACT 59.061 45.455 0.00 0.00 40.63 2.66
153 154 2.677836 TGCTCACTGAACACACAGAAAC 59.322 45.455 0.00 0.00 40.63 2.78
154 155 2.984562 TGCTCACTGAACACACAGAAA 58.015 42.857 0.00 0.00 40.63 2.52
155 156 2.689553 TGCTCACTGAACACACAGAA 57.310 45.000 0.00 0.00 40.63 3.02
156 157 2.874086 CAATGCTCACTGAACACACAGA 59.126 45.455 0.00 0.00 40.63 3.41
157 158 2.874086 TCAATGCTCACTGAACACACAG 59.126 45.455 0.00 0.00 42.78 3.66
158 159 2.916640 TCAATGCTCACTGAACACACA 58.083 42.857 0.00 0.00 0.00 3.72
159 160 3.750130 AGATCAATGCTCACTGAACACAC 59.250 43.478 0.00 0.00 0.00 3.82
160 161 3.999001 GAGATCAATGCTCACTGAACACA 59.001 43.478 0.00 0.00 32.67 3.72
161 162 4.093115 CAGAGATCAATGCTCACTGAACAC 59.907 45.833 5.78 0.00 34.46 3.32
162 163 4.251268 CAGAGATCAATGCTCACTGAACA 58.749 43.478 5.78 0.00 34.46 3.18
163 164 3.622163 CCAGAGATCAATGCTCACTGAAC 59.378 47.826 11.95 0.00 34.46 3.18
164 165 3.370209 CCCAGAGATCAATGCTCACTGAA 60.370 47.826 11.95 0.00 34.46 3.02
165 166 2.169978 CCCAGAGATCAATGCTCACTGA 59.830 50.000 11.95 0.00 34.46 3.41
166 167 2.169978 TCCCAGAGATCAATGCTCACTG 59.830 50.000 4.87 4.87 34.85 3.66
167 168 2.475155 TCCCAGAGATCAATGCTCACT 58.525 47.619 0.00 0.00 34.85 3.41
168 169 2.996249 TCCCAGAGATCAATGCTCAC 57.004 50.000 0.00 0.00 34.85 3.51
178 179 2.690497 CGTGTACAGTGATCCCAGAGAT 59.310 50.000 0.00 0.00 38.17 2.75
179 180 2.092323 CGTGTACAGTGATCCCAGAGA 58.908 52.381 0.00 0.00 0.00 3.10
180 181 1.819288 ACGTGTACAGTGATCCCAGAG 59.181 52.381 0.00 0.00 0.00 3.35
181 182 1.544246 CACGTGTACAGTGATCCCAGA 59.456 52.381 7.58 0.00 41.83 3.86
182 183 1.996292 CACGTGTACAGTGATCCCAG 58.004 55.000 7.58 0.00 41.83 4.45
183 184 0.037697 GCACGTGTACAGTGATCCCA 60.038 55.000 18.38 0.00 41.83 4.37
184 185 0.037697 TGCACGTGTACAGTGATCCC 60.038 55.000 18.38 9.96 41.83 3.85
185 186 2.010145 ATGCACGTGTACAGTGATCC 57.990 50.000 18.38 10.21 41.83 3.36
186 187 2.028045 CGAATGCACGTGTACAGTGATC 59.972 50.000 18.38 16.15 41.83 2.92
187 188 1.992667 CGAATGCACGTGTACAGTGAT 59.007 47.619 18.38 13.02 41.83 3.06
188 189 1.414378 CGAATGCACGTGTACAGTGA 58.586 50.000 18.38 11.82 41.83 3.41
189 190 0.438445 CCGAATGCACGTGTACAGTG 59.562 55.000 18.38 16.47 42.15 3.66
190 191 0.032952 ACCGAATGCACGTGTACAGT 59.967 50.000 18.38 6.62 0.00 3.55
191 192 0.438445 CACCGAATGCACGTGTACAG 59.562 55.000 18.38 7.58 0.00 2.74
192 193 0.032267 TCACCGAATGCACGTGTACA 59.968 50.000 18.38 7.94 0.00 2.90
193 194 1.323534 GATCACCGAATGCACGTGTAC 59.676 52.381 18.38 1.32 0.00 2.90
194 195 1.203758 AGATCACCGAATGCACGTGTA 59.796 47.619 18.38 14.09 0.00 2.90
195 196 0.037326 AGATCACCGAATGCACGTGT 60.037 50.000 18.38 0.00 0.00 4.49
196 197 0.647410 GAGATCACCGAATGCACGTG 59.353 55.000 12.28 12.28 0.00 4.49
197 198 0.802222 CGAGATCACCGAATGCACGT 60.802 55.000 0.00 0.00 0.00 4.49
198 199 0.525455 TCGAGATCACCGAATGCACG 60.525 55.000 7.61 0.00 32.64 5.34
199 200 0.924090 GTCGAGATCACCGAATGCAC 59.076 55.000 11.01 0.00 37.81 4.57
200 201 0.817654 AGTCGAGATCACCGAATGCA 59.182 50.000 11.01 0.00 37.81 3.96
201 202 1.927895 AAGTCGAGATCACCGAATGC 58.072 50.000 11.01 1.43 37.81 3.56
202 203 4.860072 TCATAAGTCGAGATCACCGAATG 58.140 43.478 11.01 11.19 37.81 2.67
203 204 4.580995 ACTCATAAGTCGAGATCACCGAAT 59.419 41.667 11.01 7.98 37.81 3.34
204 205 3.945921 ACTCATAAGTCGAGATCACCGAA 59.054 43.478 11.01 0.00 37.81 4.30
205 206 3.542648 ACTCATAAGTCGAGATCACCGA 58.457 45.455 6.19 6.19 34.47 4.69
206 207 3.879427 GACTCATAAGTCGAGATCACCG 58.121 50.000 0.00 0.00 42.42 4.94
217 218 2.912020 GGGACCCCGACTCATAAGT 58.088 57.895 0.00 0.00 38.88 2.24
231 232 1.157870 CGCAACGGTGATATGGGGAC 61.158 60.000 3.55 0.00 0.00 4.46
232 233 1.145156 CGCAACGGTGATATGGGGA 59.855 57.895 3.55 0.00 0.00 4.81
233 234 0.746563 AACGCAACGGTGATATGGGG 60.747 55.000 3.55 0.00 0.00 4.96
234 235 2.775351 AACGCAACGGTGATATGGG 58.225 52.632 3.55 0.00 0.00 4.00
255 256 1.928653 CCGTCAACGCGAAGAAACA 59.071 52.632 15.93 0.00 38.18 2.83
268 269 3.137687 TGTTCTGCAGAGCCGTCA 58.862 55.556 25.45 13.83 0.00 4.35
322 323 0.668401 GCATGCTTCTTGGTGTTGCC 60.668 55.000 11.37 0.00 37.90 4.52
324 325 0.037975 GGGCATGCTTCTTGGTGTTG 60.038 55.000 18.92 0.00 0.00 3.33
383 384 4.202070 TGTCTCGCGAATACACATCCAATA 60.202 41.667 17.32 0.00 0.00 1.90
438 439 1.137479 GTTCGGTATCCATTCCGGTCA 59.863 52.381 0.00 0.00 45.79 4.02
446 447 2.034939 TGTATTCGCGTTCGGTATCCAT 59.965 45.455 5.77 0.00 36.13 3.41
462 463 3.131577 CACCATTCCTGCAGCATTGTATT 59.868 43.478 8.66 0.00 0.00 1.89
469 470 2.115695 TGCACCATTCCTGCAGCA 59.884 55.556 8.66 0.00 39.76 4.41
524 526 1.467920 CCAAGGATCAACAAGGCTCC 58.532 55.000 0.00 0.00 0.00 4.70
569 571 3.243301 GCACCATCAAAGACTATGGCATG 60.243 47.826 10.98 2.76 45.53 4.06
696 701 4.394712 CCGCTCGCCCACCTTTCT 62.395 66.667 0.00 0.00 0.00 2.52
732 745 1.490574 CCCAACTCCACCCACAAAAA 58.509 50.000 0.00 0.00 0.00 1.94
756 769 7.095940 CCTCCACGTTGGTAATTACATATTACG 60.096 40.741 17.16 17.44 39.03 3.18
787 800 5.393124 CACGAGTGTACGTATGAGGTAAAA 58.607 41.667 0.00 0.00 44.76 1.52
794 807 0.798159 ACGCACGAGTGTACGTATGA 59.202 50.000 0.00 0.00 45.84 2.15
799 812 2.244251 TCAAATACGCACGAGTGTACG 58.756 47.619 8.44 3.70 42.96 3.67
800 813 4.634349 TTTCAAATACGCACGAGTGTAC 57.366 40.909 8.44 0.00 42.96 2.90
801 814 5.654317 TTTTTCAAATACGCACGAGTGTA 57.346 34.783 8.69 8.69 44.15 2.90
802 815 4.539509 TTTTTCAAATACGCACGAGTGT 57.460 36.364 4.12 4.12 42.14 3.55
827 840 8.900781 CAGATTCCATGACAACTCTGAATATTT 58.099 33.333 0.00 0.00 33.59 1.40
828 841 8.270030 TCAGATTCCATGACAACTCTGAATATT 58.730 33.333 0.00 0.00 36.96 1.28
829 842 7.799081 TCAGATTCCATGACAACTCTGAATAT 58.201 34.615 0.00 0.00 36.96 1.28
830 843 7.186570 TCAGATTCCATGACAACTCTGAATA 57.813 36.000 0.00 0.00 36.96 1.75
831 844 6.058553 TCAGATTCCATGACAACTCTGAAT 57.941 37.500 0.00 0.00 36.96 2.57
832 845 5.488262 TCAGATTCCATGACAACTCTGAA 57.512 39.130 0.00 0.00 36.96 3.02
833 846 5.240891 GTTCAGATTCCATGACAACTCTGA 58.759 41.667 0.00 1.79 37.83 3.27
834 847 4.092529 CGTTCAGATTCCATGACAACTCTG 59.907 45.833 0.00 0.00 33.16 3.35
835 848 4.248859 CGTTCAGATTCCATGACAACTCT 58.751 43.478 0.00 0.00 0.00 3.24
836 849 3.997021 ACGTTCAGATTCCATGACAACTC 59.003 43.478 0.00 0.00 0.00 3.01
837 850 4.008074 ACGTTCAGATTCCATGACAACT 57.992 40.909 0.00 0.00 0.00 3.16
838 851 4.749245 AACGTTCAGATTCCATGACAAC 57.251 40.909 0.00 0.00 0.00 3.32
839 852 5.411361 CCTAAACGTTCAGATTCCATGACAA 59.589 40.000 0.00 0.00 0.00 3.18
840 853 4.935205 CCTAAACGTTCAGATTCCATGACA 59.065 41.667 0.00 0.00 0.00 3.58
841 854 5.175859 TCCTAAACGTTCAGATTCCATGAC 58.824 41.667 0.00 0.00 0.00 3.06
842 855 5.414789 TCCTAAACGTTCAGATTCCATGA 57.585 39.130 0.00 0.00 0.00 3.07
843 856 6.683974 AATCCTAAACGTTCAGATTCCATG 57.316 37.500 0.00 0.00 0.00 3.66
844 857 8.980481 ATAAATCCTAAACGTTCAGATTCCAT 57.020 30.769 16.21 11.69 0.00 3.41
845 858 8.044309 TGATAAATCCTAAACGTTCAGATTCCA 58.956 33.333 16.21 12.82 0.00 3.53
846 859 8.433421 TGATAAATCCTAAACGTTCAGATTCC 57.567 34.615 16.21 11.22 0.00 3.01
850 863 8.889717 GGAAATGATAAATCCTAAACGTTCAGA 58.110 33.333 0.00 0.00 0.00 3.27
851 864 7.850982 CGGAAATGATAAATCCTAAACGTTCAG 59.149 37.037 0.00 0.00 0.00 3.02
852 865 7.334921 ACGGAAATGATAAATCCTAAACGTTCA 59.665 33.333 0.00 0.00 0.00 3.18
853 866 7.691158 ACGGAAATGATAAATCCTAAACGTTC 58.309 34.615 0.00 0.00 0.00 3.95
854 867 7.619964 ACGGAAATGATAAATCCTAAACGTT 57.380 32.000 0.00 0.00 0.00 3.99
855 868 7.120138 ACAACGGAAATGATAAATCCTAAACGT 59.880 33.333 0.00 0.00 0.00 3.99
856 869 7.469260 ACAACGGAAATGATAAATCCTAAACG 58.531 34.615 0.00 0.00 0.00 3.60
857 870 9.634163 AAACAACGGAAATGATAAATCCTAAAC 57.366 29.630 0.00 0.00 0.00 2.01
861 874 8.466798 CCTAAAACAACGGAAATGATAAATCCT 58.533 33.333 0.00 0.00 0.00 3.24
862 875 7.704899 CCCTAAAACAACGGAAATGATAAATCC 59.295 37.037 0.00 0.00 0.00 3.01
863 876 8.248253 ACCCTAAAACAACGGAAATGATAAATC 58.752 33.333 0.00 0.00 0.00 2.17
922 935 0.586802 GTCGTGGTCAAGTGGCTTTC 59.413 55.000 0.00 0.00 0.00 2.62
1207 1223 2.486548 CCTCGGTGGGAAGTCAAAAAGA 60.487 50.000 0.00 0.00 0.00 2.52
1211 1227 0.841289 AACCTCGGTGGGAAGTCAAA 59.159 50.000 0.66 0.00 41.11 2.69
1229 1245 2.104111 ACAACTGTGTCAATCTCCGGAA 59.896 45.455 5.23 0.00 29.49 4.30
1276 1292 4.487714 AGCCAAATCTAAACTGATCCGA 57.512 40.909 0.00 0.00 0.00 4.55
1300 1316 3.466836 CTGAACCTGCAACAGTAACAGA 58.533 45.455 4.61 0.00 33.10 3.41
1323 1339 3.369892 GGAGCAGAGTAGCCAGATCAAAA 60.370 47.826 0.00 0.00 34.23 2.44
1324 1340 2.169352 GGAGCAGAGTAGCCAGATCAAA 59.831 50.000 0.00 0.00 34.23 2.69
1325 1341 1.759445 GGAGCAGAGTAGCCAGATCAA 59.241 52.381 0.00 0.00 34.23 2.57
1326 1342 1.342374 TGGAGCAGAGTAGCCAGATCA 60.342 52.381 0.00 0.00 34.23 2.92
1327 1343 1.407936 TGGAGCAGAGTAGCCAGATC 58.592 55.000 0.00 0.00 34.23 2.75
1328 1344 1.969923 GATGGAGCAGAGTAGCCAGAT 59.030 52.381 0.00 0.00 33.26 2.90
1329 1345 1.407936 GATGGAGCAGAGTAGCCAGA 58.592 55.000 0.00 0.00 33.26 3.86
1330 1346 0.392336 GGATGGAGCAGAGTAGCCAG 59.608 60.000 0.00 0.00 33.26 4.85
1331 1347 1.395045 CGGATGGAGCAGAGTAGCCA 61.395 60.000 0.00 0.00 34.23 4.75
1332 1348 1.365633 CGGATGGAGCAGAGTAGCC 59.634 63.158 0.00 0.00 34.23 3.93
1333 1349 1.300542 GCGGATGGAGCAGAGTAGC 60.301 63.158 0.00 0.00 34.19 3.58
1334 1350 1.007964 CGCGGATGGAGCAGAGTAG 60.008 63.158 0.00 0.00 34.19 2.57
1335 1351 1.453197 TCGCGGATGGAGCAGAGTA 60.453 57.895 6.13 0.00 34.19 2.59
1336 1352 2.755876 TCGCGGATGGAGCAGAGT 60.756 61.111 6.13 0.00 34.19 3.24
1337 1353 2.279120 GTCGCGGATGGAGCAGAG 60.279 66.667 6.13 0.00 34.19 3.35
1338 1354 2.755876 AGTCGCGGATGGAGCAGA 60.756 61.111 6.13 0.00 34.19 4.26
1339 1355 2.584418 CAGTCGCGGATGGAGCAG 60.584 66.667 6.13 0.00 34.19 4.24
1340 1356 2.835701 GAACAGTCGCGGATGGAGCA 62.836 60.000 6.13 0.00 34.19 4.26
1341 1357 2.125512 AACAGTCGCGGATGGAGC 60.126 61.111 6.13 0.00 0.00 4.70
1342 1358 0.803768 CTGAACAGTCGCGGATGGAG 60.804 60.000 6.13 0.09 0.00 3.86
1343 1359 1.215382 CTGAACAGTCGCGGATGGA 59.785 57.895 6.13 0.00 0.00 3.41
1344 1360 1.811266 CCTGAACAGTCGCGGATGG 60.811 63.158 6.13 0.00 0.00 3.51
1345 1361 0.670546 AACCTGAACAGTCGCGGATG 60.671 55.000 6.13 8.21 0.00 3.51
1346 1362 0.034896 AAACCTGAACAGTCGCGGAT 59.965 50.000 6.13 0.00 0.00 4.18
1347 1363 0.179067 AAAACCTGAACAGTCGCGGA 60.179 50.000 6.13 0.00 0.00 5.54
1348 1364 0.041312 CAAAACCTGAACAGTCGCGG 60.041 55.000 6.13 0.00 0.00 6.46
1349 1365 0.934496 TCAAAACCTGAACAGTCGCG 59.066 50.000 0.00 0.00 0.00 5.87
1350 1366 1.940613 ACTCAAAACCTGAACAGTCGC 59.059 47.619 1.18 0.00 32.17 5.19
1351 1367 3.458189 AGACTCAAAACCTGAACAGTCG 58.542 45.455 1.18 0.00 33.85 4.18
1352 1368 5.819825 AAAGACTCAAAACCTGAACAGTC 57.180 39.130 1.18 0.00 32.17 3.51
1353 1369 5.710099 TCAAAAGACTCAAAACCTGAACAGT 59.290 36.000 1.18 0.00 32.17 3.55
1354 1370 6.030228 GTCAAAAGACTCAAAACCTGAACAG 58.970 40.000 0.00 0.00 32.17 3.16
1355 1371 5.105917 GGTCAAAAGACTCAAAACCTGAACA 60.106 40.000 0.00 0.00 32.17 3.18
1356 1372 5.105917 TGGTCAAAAGACTCAAAACCTGAAC 60.106 40.000 0.00 0.00 32.17 3.18
1357 1373 5.013547 TGGTCAAAAGACTCAAAACCTGAA 58.986 37.500 0.00 0.00 32.17 3.02
1358 1374 4.594970 TGGTCAAAAGACTCAAAACCTGA 58.405 39.130 0.00 0.00 0.00 3.86
1359 1375 4.981806 TGGTCAAAAGACTCAAAACCTG 57.018 40.909 0.00 0.00 0.00 4.00
1360 1376 7.287696 ACAATATGGTCAAAAGACTCAAAACCT 59.712 33.333 0.00 0.00 0.00 3.50
1361 1377 7.433680 ACAATATGGTCAAAAGACTCAAAACC 58.566 34.615 0.00 0.00 0.00 3.27
1362 1378 9.612620 CTACAATATGGTCAAAAGACTCAAAAC 57.387 33.333 0.00 0.00 0.00 2.43
1363 1379 9.349713 ACTACAATATGGTCAAAAGACTCAAAA 57.650 29.630 0.00 0.00 0.00 2.44
1364 1380 8.783093 CACTACAATATGGTCAAAAGACTCAAA 58.217 33.333 0.00 0.00 0.00 2.69
1365 1381 7.094805 GCACTACAATATGGTCAAAAGACTCAA 60.095 37.037 0.00 0.00 0.00 3.02
1366 1382 6.371548 GCACTACAATATGGTCAAAAGACTCA 59.628 38.462 0.00 0.00 0.00 3.41
1367 1383 6.371548 TGCACTACAATATGGTCAAAAGACTC 59.628 38.462 0.00 0.00 0.00 3.36
1368 1384 6.237901 TGCACTACAATATGGTCAAAAGACT 58.762 36.000 0.00 0.00 0.00 3.24
1369 1385 6.494893 TGCACTACAATATGGTCAAAAGAC 57.505 37.500 0.00 0.00 0.00 3.01
1370 1386 5.123820 GCTGCACTACAATATGGTCAAAAGA 59.876 40.000 0.00 0.00 0.00 2.52
1371 1387 5.335127 GCTGCACTACAATATGGTCAAAAG 58.665 41.667 0.00 0.00 0.00 2.27
1471 1516 2.100252 GCTGCCTGTATAGGTGAACGTA 59.900 50.000 7.43 0.00 46.41 3.57
1485 1530 0.604780 AAGTGCTAGTGTGCTGCCTG 60.605 55.000 0.00 0.00 0.00 4.85
1503 1548 5.068329 TGTGTGGCTGTGTATTGAAATTGAA 59.932 36.000 0.00 0.00 0.00 2.69
1504 1549 4.582240 TGTGTGGCTGTGTATTGAAATTGA 59.418 37.500 0.00 0.00 0.00 2.57
1505 1550 4.869215 TGTGTGGCTGTGTATTGAAATTG 58.131 39.130 0.00 0.00 0.00 2.32
1506 1551 5.472148 CATGTGTGGCTGTGTATTGAAATT 58.528 37.500 0.00 0.00 0.00 1.82
1507 1552 4.082081 CCATGTGTGGCTGTGTATTGAAAT 60.082 41.667 0.00 0.00 39.01 2.17
1508 1553 3.255395 CCATGTGTGGCTGTGTATTGAAA 59.745 43.478 0.00 0.00 39.01 2.69
1628 1684 2.703536 TCAAGTCAAGTCTGGCCACTAA 59.296 45.455 0.00 0.00 0.00 2.24
1720 1776 3.191078 AGCAAGATTTGATCCTCGGAG 57.809 47.619 0.00 0.00 0.00 4.63
1728 1784 7.229506 GCTAACCCTACATAAGCAAGATTTGAT 59.770 37.037 0.00 0.00 33.38 2.57
1756 1812 7.282585 TGGAATAGGAGGTAATCTTGACAATG 58.717 38.462 0.00 0.00 0.00 2.82
1776 1832 4.450976 GTTCTTTGTTTGCCCTTTGGAAT 58.549 39.130 0.00 0.00 0.00 3.01
2246 2302 9.533831 AAACAAATAATAACTCAGAATCCCAGT 57.466 29.630 0.00 0.00 0.00 4.00
2365 2421 2.031616 CCATCATCGCCATCCGCT 59.968 61.111 0.00 0.00 36.73 5.52
2547 2605 6.682423 ATAATCAACGCATTTCACTGATCA 57.318 33.333 0.00 0.00 0.00 2.92
2670 2729 3.442625 AGGCGCCAACTAAATTAACCTTC 59.557 43.478 31.54 0.00 0.00 3.46
2744 2803 6.706716 GGGAAGCAGAGTATAAGATGTTAACC 59.293 42.308 2.48 0.00 0.00 2.85
2871 2930 6.279882 CACACTTGGTGGTTATTGTTCAAAT 58.720 36.000 2.75 0.00 44.04 2.32
2886 2945 3.253188 GCATCATACACAACACACTTGGT 59.747 43.478 0.00 0.00 0.00 3.67
2940 2999 4.681483 GCTTAACATGGAAAGCACTTCAAC 59.319 41.667 22.36 0.00 45.89 3.18
3024 3083 4.098349 TGAGCAGCAAGACAAATGAACTTT 59.902 37.500 0.00 0.00 0.00 2.66
3031 3090 2.955614 GCATTGAGCAGCAAGACAAAT 58.044 42.857 0.00 0.00 44.79 2.32
3068 3127 5.703592 TGCCGTGAATGTTAGTAAGTTCATT 59.296 36.000 11.67 5.71 33.65 2.57
3243 3302 3.340034 TCGTTAAAGGCATTACCCACAG 58.660 45.455 0.00 0.00 40.58 3.66
3295 3354 9.374838 GAAATTATTTGGCAAATCAGTCAAGAT 57.625 29.630 27.42 9.80 34.18 2.40
3322 3381 7.860373 TCAAAAGCACGCAACATATTTATATCC 59.140 33.333 0.00 0.00 0.00 2.59
3323 3382 8.781067 TCAAAAGCACGCAACATATTTATATC 57.219 30.769 0.00 0.00 0.00 1.63
3353 3412 9.098355 CTCTCGAATTTGTTTTATACATCTGGA 57.902 33.333 0.00 0.00 36.44 3.86
3357 3416 7.920738 AGCCTCTCGAATTTGTTTTATACATC 58.079 34.615 0.00 0.00 36.44 3.06
3364 3423 7.657336 TCAATAAAGCCTCTCGAATTTGTTTT 58.343 30.769 0.00 0.00 0.00 2.43
3399 3458 8.634335 TCTGAACACATTTTATGGATTTCTCA 57.366 30.769 0.00 0.00 33.60 3.27
3416 3477 7.383102 AGTTGTTTCATATGGATCTGAACAC 57.617 36.000 2.13 0.00 31.41 3.32
3518 3579 3.181436 CCAAGGTATGATCCCAGATGCTT 60.181 47.826 0.00 0.00 0.00 3.91
3520 3581 2.553904 CCCAAGGTATGATCCCAGATGC 60.554 54.545 0.00 0.00 0.00 3.91
3538 3599 1.209504 GTCAGGTGCTAGTTATGCCCA 59.790 52.381 0.00 0.00 0.00 5.36
3576 3637 1.070275 GGTCCGTTCCAAGTCGGTT 59.930 57.895 3.64 0.00 45.88 4.44
3595 3656 7.539366 GTGATAGATCGCTATAGAGTTGGTTTC 59.461 40.741 3.21 0.00 37.45 2.78
3607 3668 5.416326 GGTTACTGAGGTGATAGATCGCTAT 59.584 44.000 3.26 0.00 40.00 2.97
3648 3709 0.043310 GCACGAACACAGAACACGTC 60.043 55.000 0.00 0.00 35.05 4.34
3680 3741 2.996621 CCCTCGACAAGTCAAGATCAAC 59.003 50.000 0.00 0.00 0.00 3.18
3694 3756 1.587547 GAATTCATCAGGCCCTCGAC 58.412 55.000 0.00 0.00 0.00 4.20
3706 3768 3.370103 CCAATGCTTTGCTGGGAATTCAT 60.370 43.478 7.93 0.00 0.00 2.57
3924 3988 2.952978 ACCAGCACACCGTCATTAAAAA 59.047 40.909 0.00 0.00 0.00 1.94
3925 3989 2.577700 ACCAGCACACCGTCATTAAAA 58.422 42.857 0.00 0.00 0.00 1.52
3926 3990 2.264005 ACCAGCACACCGTCATTAAA 57.736 45.000 0.00 0.00 0.00 1.52
3927 3991 2.264005 AACCAGCACACCGTCATTAA 57.736 45.000 0.00 0.00 0.00 1.40
3928 3992 2.264005 AAACCAGCACACCGTCATTA 57.736 45.000 0.00 0.00 0.00 1.90
3929 3993 1.066908 CAAAACCAGCACACCGTCATT 59.933 47.619 0.00 0.00 0.00 2.57
3930 3994 0.667993 CAAAACCAGCACACCGTCAT 59.332 50.000 0.00 0.00 0.00 3.06
3931 3995 0.678366 ACAAAACCAGCACACCGTCA 60.678 50.000 0.00 0.00 0.00 4.35
3932 3996 0.248458 CACAAAACCAGCACACCGTC 60.248 55.000 0.00 0.00 0.00 4.79
3940 4004 3.564225 ACACTAAGTAGCACAAAACCAGC 59.436 43.478 0.00 0.00 0.00 4.85
4055 4119 5.921962 AGGAAGATGAAAAAGGCATAACC 57.078 39.130 0.00 0.00 39.61 2.85
4114 4178 1.719725 CTAAGCTCCGCTCTCTCGCA 61.720 60.000 0.00 0.00 38.25 5.10
4125 4189 5.771153 ACCGACTATTAAGACTAAGCTCC 57.229 43.478 0.00 0.00 0.00 4.70
4148 4234 3.671459 CGTTGACTATAACAACAGTCGCA 59.329 43.478 16.98 0.00 45.09 5.10
4272 4385 4.576463 GCCTAGCTATTTGTGCTGTAATGT 59.424 41.667 0.00 0.00 41.32 2.71
4281 4394 2.032549 GCGTGATGCCTAGCTATTTGTG 60.033 50.000 0.00 0.00 37.76 3.33
4282 4395 2.213499 GCGTGATGCCTAGCTATTTGT 58.787 47.619 0.00 0.00 37.76 2.83
4283 4396 2.957576 GCGTGATGCCTAGCTATTTG 57.042 50.000 0.00 0.00 37.76 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.