Multiple sequence alignment - TraesCS6D01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G136100 chr6D 100.000 3775 0 0 1 3775 104301681 104297907 0.000000e+00 6972.0
1 TraesCS6D01G136100 chr6D 95.954 519 21 0 2817 3335 334446002 334445484 0.000000e+00 843.0
2 TraesCS6D01G136100 chr6D 95.761 519 22 0 2817 3335 140255709 140255191 0.000000e+00 837.0
3 TraesCS6D01G136100 chr6D 95.577 520 23 0 2817 3336 334433206 334432687 0.000000e+00 833.0
4 TraesCS6D01G136100 chr6D 95.402 522 20 4 2817 3335 193257457 193256937 0.000000e+00 828.0
5 TraesCS6D01G136100 chr6B 90.769 2860 130 49 1 2816 189531532 189528763 0.000000e+00 3696.0
6 TraesCS6D01G136100 chr6B 84.293 382 31 9 3336 3715 189528767 189528413 2.790000e-91 346.0
7 TraesCS6D01G136100 chr6A 89.308 2357 118 52 555 2814 125884095 125881776 0.000000e+00 2833.0
8 TraesCS6D01G136100 chr6A 85.837 466 23 11 1 452 125884542 125884106 4.450000e-124 455.0
9 TraesCS6D01G136100 chr5D 96.532 519 18 0 2817 3335 352459474 352458956 0.000000e+00 859.0
10 TraesCS6D01G136100 chr5D 96.161 521 20 0 2815 3335 352560496 352559976 0.000000e+00 852.0
11 TraesCS6D01G136100 chr5D 95.985 523 20 1 2817 3339 136966754 136966233 0.000000e+00 848.0
12 TraesCS6D01G136100 chr5D 95.029 523 24 2 2813 3335 136987805 136987285 0.000000e+00 821.0
13 TraesCS6D01G136100 chr3D 95.761 519 22 0 2817 3335 509664619 509665137 0.000000e+00 837.0
14 TraesCS6D01G136100 chr7A 81.416 226 39 2 3370 3593 418104531 418104755 8.330000e-42 182.0
15 TraesCS6D01G136100 chr4B 80.519 231 42 2 3370 3598 188199897 188199668 1.390000e-39 174.0
16 TraesCS6D01G136100 chr2A 80.435 230 42 2 3370 3597 522070782 522071010 5.010000e-39 172.0
17 TraesCS6D01G136100 chr1A 79.399 233 44 3 3370 3599 532234733 532234502 1.090000e-35 161.0
18 TraesCS6D01G136100 chr2B 80.500 200 35 3 3370 3567 706200346 706200543 2.350000e-32 150.0
19 TraesCS6D01G136100 chr2B 78.107 169 22 6 1373 1533 202917421 202917582 4.010000e-15 93.5
20 TraesCS6D01G136100 chr4D 76.419 229 31 11 3371 3597 6031128 6031335 6.670000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G136100 chr6D 104297907 104301681 3774 True 6972 6972 100.0000 1 3775 1 chr6D.!!$R1 3774
1 TraesCS6D01G136100 chr6D 334445484 334446002 518 True 843 843 95.9540 2817 3335 1 chr6D.!!$R5 518
2 TraesCS6D01G136100 chr6D 140255191 140255709 518 True 837 837 95.7610 2817 3335 1 chr6D.!!$R2 518
3 TraesCS6D01G136100 chr6D 334432687 334433206 519 True 833 833 95.5770 2817 3336 1 chr6D.!!$R4 519
4 TraesCS6D01G136100 chr6D 193256937 193257457 520 True 828 828 95.4020 2817 3335 1 chr6D.!!$R3 518
5 TraesCS6D01G136100 chr6B 189528413 189531532 3119 True 2021 3696 87.5310 1 3715 2 chr6B.!!$R1 3714
6 TraesCS6D01G136100 chr6A 125881776 125884542 2766 True 1644 2833 87.5725 1 2814 2 chr6A.!!$R1 2813
7 TraesCS6D01G136100 chr5D 352458956 352459474 518 True 859 859 96.5320 2817 3335 1 chr5D.!!$R3 518
8 TraesCS6D01G136100 chr5D 352559976 352560496 520 True 852 852 96.1610 2815 3335 1 chr5D.!!$R4 520
9 TraesCS6D01G136100 chr5D 136966233 136966754 521 True 848 848 95.9850 2817 3339 1 chr5D.!!$R1 522
10 TraesCS6D01G136100 chr5D 136987285 136987805 520 True 821 821 95.0290 2813 3335 1 chr5D.!!$R2 522
11 TraesCS6D01G136100 chr3D 509664619 509665137 518 False 837 837 95.7610 2817 3335 1 chr3D.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 724 0.179100 CTAGCCACCGTGATGTGAGG 60.179 60.0 0.00 0.0 38.55 3.86 F
1470 1553 0.102844 CAGCTAGCCTCTGTCTGCTC 59.897 60.0 12.13 0.0 39.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2261 1.056103 CGACGACTGCACTCAGAAAG 58.944 55.0 0.0 0.0 42.95 2.62 R
3428 3570 0.465460 AAAAGTCTCGCAGCCCACAA 60.465 50.0 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.142357 CTGCGGACTGGTCTGTCGAA 62.142 60.000 10.69 0.00 38.23 3.71
30 31 1.003116 GTCTGTCGAATCATGCATGGC 60.003 52.381 25.97 14.55 0.00 4.40
31 32 0.309922 CTGTCGAATCATGCATGGCC 59.690 55.000 25.97 13.94 0.00 5.36
32 33 1.280746 GTCGAATCATGCATGGCCG 59.719 57.895 25.97 23.33 0.00 6.13
33 34 1.893335 TCGAATCATGCATGGCCGG 60.893 57.895 25.97 13.43 0.00 6.13
58 63 3.030652 CGGCAAGTCGGCAAAACT 58.969 55.556 0.00 0.00 41.26 2.66
109 114 1.937899 CGGTTTTCTTTGTCCTGTCGT 59.062 47.619 0.00 0.00 0.00 4.34
215 220 9.793252 TGTCAAGTACCTCGAAGTAAAATATAC 57.207 33.333 0.00 0.00 0.00 1.47
216 221 8.951969 GTCAAGTACCTCGAAGTAAAATATACG 58.048 37.037 0.00 0.00 0.00 3.06
222 227 7.420800 ACCTCGAAGTAAAATATACGGTACTG 58.579 38.462 0.00 0.00 0.00 2.74
232 237 7.886629 AAATATACGGTACTGGTCTCTGTTA 57.113 36.000 6.65 0.00 0.00 2.41
269 274 6.325993 TCAATGATTGGAGGAATGGAACTA 57.674 37.500 5.20 0.00 0.00 2.24
350 367 5.016173 TGGATTTGGTACCATCTTTCAAGG 58.984 41.667 17.17 0.00 0.00 3.61
356 373 5.027460 TGGTACCATCTTTCAAGGCTAGTA 58.973 41.667 11.60 0.00 0.00 1.82
357 374 5.128827 TGGTACCATCTTTCAAGGCTAGTAG 59.871 44.000 11.60 0.00 0.00 2.57
358 375 4.762289 ACCATCTTTCAAGGCTAGTAGG 57.238 45.455 0.00 0.00 0.00 3.18
359 376 4.362677 ACCATCTTTCAAGGCTAGTAGGA 58.637 43.478 0.00 0.00 0.00 2.94
360 377 4.407296 ACCATCTTTCAAGGCTAGTAGGAG 59.593 45.833 0.00 0.00 0.00 3.69
361 378 4.407296 CCATCTTTCAAGGCTAGTAGGAGT 59.593 45.833 0.00 0.00 0.00 3.85
362 379 5.355596 CATCTTTCAAGGCTAGTAGGAGTG 58.644 45.833 0.00 0.00 0.00 3.51
363 380 3.195825 TCTTTCAAGGCTAGTAGGAGTGC 59.804 47.826 0.00 0.00 0.00 4.40
382 399 5.911752 AGTGCAGGACTAGATTATCTTGTG 58.088 41.667 13.48 1.98 32.84 3.33
436 456 4.578898 ACGCGACAGCCAACGTCA 62.579 61.111 15.93 0.00 41.18 4.35
467 487 5.150683 TGCACTTATTTCAAACGATTTCCG 58.849 37.500 0.00 0.00 45.44 4.30
486 506 1.351153 GCAAGTACGGAACTGCTCTC 58.649 55.000 0.00 0.00 38.88 3.20
544 564 3.792053 GATCCGCCGTGGCCTGTAG 62.792 68.421 3.32 0.00 37.80 2.74
546 566 4.388499 CCGCCGTGGCCTGTAGTT 62.388 66.667 3.32 0.00 37.98 2.24
547 567 2.574929 CGCCGTGGCCTGTAGTTA 59.425 61.111 3.32 0.00 37.98 2.24
548 568 1.079681 CGCCGTGGCCTGTAGTTAA 60.080 57.895 3.32 0.00 37.98 2.01
580 605 2.353958 CAGTGGCATGGGAGCACT 59.646 61.111 0.00 0.00 35.83 4.40
593 618 0.461693 GAGCACTGCACAGGAGGATC 60.462 60.000 3.30 0.00 0.00 3.36
653 678 3.948719 GGGTGGGTGCCTCGTTGA 61.949 66.667 0.00 0.00 0.00 3.18
655 680 1.303317 GGTGGGTGCCTCGTTGAAT 60.303 57.895 0.00 0.00 0.00 2.57
698 724 0.179100 CTAGCCACCGTGATGTGAGG 60.179 60.000 0.00 0.00 38.55 3.86
739 765 1.593209 GACCACGCACGGAAGTTCA 60.593 57.895 5.01 0.00 46.40 3.18
742 768 2.108157 ACGCACGGAAGTTCAGCA 59.892 55.556 5.01 0.00 46.40 4.41
743 769 1.956170 ACGCACGGAAGTTCAGCAG 60.956 57.895 5.01 0.00 46.40 4.24
751 777 0.387367 GAAGTTCAGCAGCGACGAGA 60.387 55.000 0.00 0.00 0.00 4.04
804 831 4.328440 CCAGTTGTGAGAAGATTCGATCAC 59.672 45.833 7.48 7.48 41.89 3.06
1060 1106 2.509916 CTGCCCATCCTCTGCTCC 59.490 66.667 0.00 0.00 0.00 4.70
1084 1130 2.905075 TCTCTCTTGCTCTCTCTCTCG 58.095 52.381 0.00 0.00 0.00 4.04
1147 1209 4.260355 CGCAATGGCATCAGCGGG 62.260 66.667 28.67 12.17 45.83 6.13
1465 1548 3.634448 TCTCATTACAGCTAGCCTCTGTC 59.366 47.826 12.13 0.00 43.13 3.51
1470 1553 0.102844 CAGCTAGCCTCTGTCTGCTC 59.897 60.000 12.13 0.00 39.00 4.26
1475 1558 1.273759 AGCCTCTGTCTGCTCAATCA 58.726 50.000 0.00 0.00 30.33 2.57
1476 1559 1.838715 AGCCTCTGTCTGCTCAATCAT 59.161 47.619 0.00 0.00 30.33 2.45
1483 1566 6.005583 TCTGTCTGCTCAATCATTGAAAAC 57.994 37.500 0.75 0.00 39.58 2.43
2069 2160 0.951558 CAAGGAACACCCGAGGTTTG 59.048 55.000 0.00 0.00 40.87 2.93
2070 2161 0.841289 AAGGAACACCCGAGGTTTGA 59.159 50.000 0.00 0.00 40.87 2.69
2071 2162 1.064825 AGGAACACCCGAGGTTTGAT 58.935 50.000 0.00 0.00 40.87 2.57
2072 2163 1.423921 AGGAACACCCGAGGTTTGATT 59.576 47.619 0.00 0.00 40.87 2.57
2118 2209 2.549754 ACATCGAGTTCTGCACTTTTGG 59.450 45.455 0.00 0.00 35.01 3.28
2135 2226 2.760634 TGGTCATGATGTTGCGTAGT 57.239 45.000 0.00 0.00 0.00 2.73
2136 2227 3.878160 TGGTCATGATGTTGCGTAGTA 57.122 42.857 0.00 0.00 0.00 1.82
2137 2228 3.780902 TGGTCATGATGTTGCGTAGTAG 58.219 45.455 0.00 0.00 0.00 2.57
2176 2268 6.800216 CAAATAATTGCGTGTTGTCTTTCTG 58.200 36.000 0.00 0.00 0.00 3.02
2177 2269 5.940192 ATAATTGCGTGTTGTCTTTCTGA 57.060 34.783 0.00 0.00 0.00 3.27
2294 2398 1.407258 GATTCAGAGGACGGACAGGAG 59.593 57.143 0.00 0.00 0.00 3.69
2295 2399 0.612174 TTCAGAGGACGGACAGGAGG 60.612 60.000 0.00 0.00 0.00 4.30
2296 2400 1.000771 CAGAGGACGGACAGGAGGA 60.001 63.158 0.00 0.00 0.00 3.71
2297 2401 1.034838 CAGAGGACGGACAGGAGGAG 61.035 65.000 0.00 0.00 0.00 3.69
2298 2402 1.755008 GAGGACGGACAGGAGGAGG 60.755 68.421 0.00 0.00 0.00 4.30
2299 2403 3.462678 GGACGGACAGGAGGAGGC 61.463 72.222 0.00 0.00 0.00 4.70
2480 2596 2.032681 AAGGACACCGCCAAGCTC 59.967 61.111 0.00 0.00 0.00 4.09
2522 2638 2.504519 GGTACGGGGCAGTGATCC 59.495 66.667 0.00 0.00 0.00 3.36
2562 2690 2.348104 TACCTCGTGCGGCAGTGAT 61.348 57.895 1.18 0.00 0.00 3.06
2611 2741 2.048127 GAGAGCCCGAACGTGCTT 60.048 61.111 5.64 0.00 38.11 3.91
2663 2794 3.307199 CGGGAAAAGCTTAGGTCCAGTTA 60.307 47.826 19.84 0.00 31.30 2.24
2688 2819 1.590932 CTGGCTGGCTGATGATGTAC 58.409 55.000 2.00 0.00 0.00 2.90
2728 2859 5.123979 GGGTATACTGCAGAAAGGTCTTTTG 59.876 44.000 23.35 0.00 32.11 2.44
2775 2907 6.238103 GCTAAGCGCTGATCAACAATTACTTA 60.238 38.462 12.58 0.00 35.14 2.24
2885 3024 1.137086 GAGCCATCGCAACTAGGAAGA 59.863 52.381 0.00 0.00 37.52 2.87
2887 3026 1.936547 GCCATCGCAACTAGGAAGAAG 59.063 52.381 0.00 0.00 34.03 2.85
2894 3033 2.572104 GCAACTAGGAAGAAGGAAGGGA 59.428 50.000 0.00 0.00 0.00 4.20
2925 3064 4.520179 GACAAAGGACACGGGGTTTATAT 58.480 43.478 0.00 0.00 0.00 0.86
2936 3075 2.423803 GGGGTTTATATTGGTTCGGCCT 60.424 50.000 0.00 0.00 38.35 5.19
2976 3115 3.008049 AGCCTACGATCCAGTTTTGAGTT 59.992 43.478 0.00 0.00 0.00 3.01
2999 3138 4.982295 TGGATTGCTTATGTCTCGATAACG 59.018 41.667 0.00 0.00 41.26 3.18
3339 3481 9.807921 ACTAATAATTATATCCCCAACAACTGG 57.192 33.333 0.00 0.00 45.97 4.00
3355 3497 5.197451 ACAACTGGAGACATGTTTGGTTTA 58.803 37.500 0.00 0.00 41.51 2.01
3361 3503 5.067153 TGGAGACATGTTTGGTTTACAAGTG 59.933 40.000 0.00 0.00 36.27 3.16
3379 3521 7.568199 ACAAGTGTTATTATCATGCCTAACC 57.432 36.000 0.00 0.00 0.00 2.85
3402 3544 5.163723 CCTTAGTCATGCCACAACATGTTAG 60.164 44.000 11.53 8.48 46.15 2.34
3427 3569 5.217393 CAGATGTTTGGTTCATTGTCACAG 58.783 41.667 0.00 0.00 0.00 3.66
3428 3570 4.889409 AGATGTTTGGTTCATTGTCACAGT 59.111 37.500 0.00 0.00 0.00 3.55
3429 3571 5.360714 AGATGTTTGGTTCATTGTCACAGTT 59.639 36.000 0.00 0.00 0.00 3.16
3435 3577 1.317613 TCATTGTCACAGTTGTGGGC 58.682 50.000 11.98 6.61 45.65 5.36
3439 3581 2.591429 TCACAGTTGTGGGCTGCG 60.591 61.111 11.98 0.00 45.65 5.18
3454 3596 0.716108 CTGCGAGACTTTTGTAGCCG 59.284 55.000 0.00 0.00 0.00 5.52
3496 3638 5.829233 GCTTAGTTTTGCCAAATCTTGTC 57.171 39.130 6.10 0.00 0.00 3.18
3497 3639 5.288804 GCTTAGTTTTGCCAAATCTTGTCA 58.711 37.500 6.10 0.00 0.00 3.58
3519 3661 8.366401 TGTCACATTTATGATGGTCATTTTGTT 58.634 29.630 0.00 0.00 38.26 2.83
3520 3662 8.863049 GTCACATTTATGATGGTCATTTTGTTC 58.137 33.333 0.00 0.00 38.26 3.18
3527 3669 4.336713 TGATGGTCATTTTGTTCGTCACAA 59.663 37.500 0.00 0.00 44.11 3.33
3542 3684 1.459158 ACAATTTGGGTGGCAGCCA 60.459 52.632 33.11 33.11 45.25 4.75
3550 3692 4.120331 GTGGCAGCCACGGATTGC 62.120 66.667 28.91 4.33 44.95 3.56
3560 3702 2.942306 GCCACGGATTGCCTAAGGTTTA 60.942 50.000 0.00 0.00 0.00 2.01
3561 3703 2.943033 CCACGGATTGCCTAAGGTTTAG 59.057 50.000 0.00 0.00 0.00 1.85
3563 3705 4.007659 CACGGATTGCCTAAGGTTTAGTT 58.992 43.478 0.00 0.00 0.00 2.24
3564 3706 4.007659 ACGGATTGCCTAAGGTTTAGTTG 58.992 43.478 0.00 0.00 0.00 3.16
3565 3707 4.007659 CGGATTGCCTAAGGTTTAGTTGT 58.992 43.478 0.00 0.00 0.00 3.32
3567 3709 5.007682 GGATTGCCTAAGGTTTAGTTGTGA 58.992 41.667 0.00 0.00 0.00 3.58
3568 3710 5.106277 GGATTGCCTAAGGTTTAGTTGTGAC 60.106 44.000 0.00 0.00 0.00 3.67
3571 3713 3.751698 GCCTAAGGTTTAGTTGTGACAGG 59.248 47.826 0.00 0.00 0.00 4.00
3572 3714 4.324267 CCTAAGGTTTAGTTGTGACAGGG 58.676 47.826 0.00 0.00 0.00 4.45
3574 3716 3.945640 AGGTTTAGTTGTGACAGGGTT 57.054 42.857 0.00 0.00 0.00 4.11
3575 3717 3.816994 AGGTTTAGTTGTGACAGGGTTC 58.183 45.455 0.00 0.00 0.00 3.62
3576 3718 3.201266 AGGTTTAGTTGTGACAGGGTTCA 59.799 43.478 0.00 0.00 0.00 3.18
3577 3719 4.141251 AGGTTTAGTTGTGACAGGGTTCAT 60.141 41.667 0.00 0.00 0.00 2.57
3578 3720 4.215613 GGTTTAGTTGTGACAGGGTTCATC 59.784 45.833 0.00 0.00 0.00 2.92
3579 3721 4.698201 TTAGTTGTGACAGGGTTCATCA 57.302 40.909 0.00 0.00 0.00 3.07
3580 3722 3.795688 AGTTGTGACAGGGTTCATCAT 57.204 42.857 0.00 0.00 0.00 2.45
3581 3723 3.415212 AGTTGTGACAGGGTTCATCATG 58.585 45.455 0.00 0.00 0.00 3.07
3582 3724 3.072915 AGTTGTGACAGGGTTCATCATGA 59.927 43.478 0.00 0.00 0.00 3.07
3583 3725 3.786368 TGTGACAGGGTTCATCATGAA 57.214 42.857 0.00 0.00 33.32 2.57
3593 3735 3.940209 TTCATCATGAACCAAACAGGC 57.060 42.857 0.00 0.00 43.14 4.85
3594 3736 2.170166 TCATCATGAACCAAACAGGCC 58.830 47.619 0.00 0.00 43.14 5.19
3595 3737 1.205417 CATCATGAACCAAACAGGCCC 59.795 52.381 0.00 0.00 43.14 5.80
3596 3738 0.482446 TCATGAACCAAACAGGCCCT 59.518 50.000 0.00 0.00 43.14 5.19
3597 3739 1.707989 TCATGAACCAAACAGGCCCTA 59.292 47.619 0.00 0.00 43.14 3.53
3598 3740 2.094675 CATGAACCAAACAGGCCCTAG 58.905 52.381 0.00 0.00 43.14 3.02
3599 3741 1.440618 TGAACCAAACAGGCCCTAGA 58.559 50.000 0.00 0.00 43.14 2.43
3600 3742 1.992557 TGAACCAAACAGGCCCTAGAT 59.007 47.619 0.00 0.00 43.14 1.98
3606 3748 1.681229 AACAGGCCCTAGATTCCCAA 58.319 50.000 0.00 0.00 0.00 4.12
3627 3769 2.310309 GCTATGTAGCGCATGTGCA 58.690 52.632 31.29 15.55 42.21 4.57
3694 3836 2.237143 TCTCCTCACCCAAGCAACATAG 59.763 50.000 0.00 0.00 0.00 2.23
3699 3841 5.606749 TCCTCACCCAAGCAACATAGTATAT 59.393 40.000 0.00 0.00 0.00 0.86
3703 3845 5.989168 CACCCAAGCAACATAGTATATTCGA 59.011 40.000 0.00 0.00 0.00 3.71
3724 3866 9.751542 ATTCGAAATTACCAAATGTACAAACAA 57.248 25.926 0.00 0.00 39.58 2.83
3725 3867 9.582431 TTCGAAATTACCAAATGTACAAACAAA 57.418 25.926 0.00 0.00 39.58 2.83
3726 3868 9.582431 TCGAAATTACCAAATGTACAAACAAAA 57.418 25.926 0.00 0.00 39.58 2.44
3732 3874 9.751542 TTACCAAATGTACAAACAAAATAGGTG 57.248 29.630 0.00 0.00 39.58 4.00
3733 3875 8.012957 ACCAAATGTACAAACAAAATAGGTGA 57.987 30.769 0.00 0.00 39.58 4.02
3734 3876 7.923878 ACCAAATGTACAAACAAAATAGGTGAC 59.076 33.333 0.00 0.00 39.58 3.67
3735 3877 7.923344 CCAAATGTACAAACAAAATAGGTGACA 59.077 33.333 0.00 0.00 39.58 3.58
3736 3878 9.474920 CAAATGTACAAACAAAATAGGTGACAT 57.525 29.630 0.00 0.00 39.58 3.06
3737 3879 9.691362 AAATGTACAAACAAAATAGGTGACATC 57.309 29.630 0.00 0.00 39.58 3.06
3738 3880 7.809546 TGTACAAACAAAATAGGTGACATCA 57.190 32.000 0.00 0.00 30.91 3.07
3739 3881 8.226819 TGTACAAACAAAATAGGTGACATCAA 57.773 30.769 0.00 0.00 30.91 2.57
3740 3882 8.855110 TGTACAAACAAAATAGGTGACATCAAT 58.145 29.630 0.00 0.00 30.91 2.57
3741 3883 9.128107 GTACAAACAAAATAGGTGACATCAATG 57.872 33.333 0.00 0.00 0.00 2.82
3742 3884 6.646240 ACAAACAAAATAGGTGACATCAATGC 59.354 34.615 0.00 0.00 0.00 3.56
3743 3885 5.329035 ACAAAATAGGTGACATCAATGCC 57.671 39.130 0.00 0.00 0.00 4.40
3744 3886 4.771577 ACAAAATAGGTGACATCAATGCCA 59.228 37.500 0.00 0.00 0.00 4.92
3745 3887 5.422970 ACAAAATAGGTGACATCAATGCCAT 59.577 36.000 0.00 0.00 0.00 4.40
3746 3888 5.524971 AAATAGGTGACATCAATGCCATG 57.475 39.130 0.00 0.00 0.00 3.66
3747 3889 1.108776 AGGTGACATCAATGCCATGC 58.891 50.000 0.00 0.00 0.00 4.06
3748 3890 0.818938 GGTGACATCAATGCCATGCA 59.181 50.000 0.00 0.00 44.86 3.96
3749 3891 1.205179 GGTGACATCAATGCCATGCAA 59.795 47.619 0.00 0.00 43.62 4.08
3750 3892 2.353903 GGTGACATCAATGCCATGCAAA 60.354 45.455 0.00 0.00 43.62 3.68
3751 3893 3.327626 GTGACATCAATGCCATGCAAAA 58.672 40.909 0.00 0.00 43.62 2.44
3752 3894 3.936453 GTGACATCAATGCCATGCAAAAT 59.064 39.130 0.00 0.00 43.62 1.82
3753 3895 5.110598 GTGACATCAATGCCATGCAAAATA 58.889 37.500 0.00 0.00 43.62 1.40
3754 3896 5.581479 GTGACATCAATGCCATGCAAAATAA 59.419 36.000 0.00 0.00 43.62 1.40
3755 3897 6.259167 GTGACATCAATGCCATGCAAAATAAT 59.741 34.615 0.00 0.00 43.62 1.28
3756 3898 7.438757 GTGACATCAATGCCATGCAAAATAATA 59.561 33.333 0.00 0.00 43.62 0.98
3757 3899 7.654116 TGACATCAATGCCATGCAAAATAATAG 59.346 33.333 0.00 0.00 43.62 1.73
3758 3900 6.425721 ACATCAATGCCATGCAAAATAATAGC 59.574 34.615 0.00 0.00 43.62 2.97
3759 3901 5.915175 TCAATGCCATGCAAAATAATAGCA 58.085 33.333 0.00 0.00 43.62 3.49
3760 3902 5.986741 TCAATGCCATGCAAAATAATAGCAG 59.013 36.000 0.00 0.00 43.62 4.24
3761 3903 5.794726 ATGCCATGCAAAATAATAGCAGA 57.205 34.783 0.00 0.00 43.62 4.26
3762 3904 4.935702 TGCCATGCAAAATAATAGCAGAC 58.064 39.130 0.00 0.00 42.14 3.51
3763 3905 4.646040 TGCCATGCAAAATAATAGCAGACT 59.354 37.500 0.00 0.00 42.14 3.24
3764 3906 5.127519 TGCCATGCAAAATAATAGCAGACTT 59.872 36.000 0.00 0.00 42.14 3.01
3765 3907 6.044682 GCCATGCAAAATAATAGCAGACTTT 58.955 36.000 0.00 0.00 42.14 2.66
3766 3908 6.199719 GCCATGCAAAATAATAGCAGACTTTC 59.800 38.462 0.00 0.00 42.14 2.62
3767 3909 7.259882 CCATGCAAAATAATAGCAGACTTTCA 58.740 34.615 0.00 0.00 42.14 2.69
3768 3910 7.760794 CCATGCAAAATAATAGCAGACTTTCAA 59.239 33.333 0.00 0.00 42.14 2.69
3769 3911 8.804743 CATGCAAAATAATAGCAGACTTTCAAG 58.195 33.333 0.00 0.00 42.14 3.02
3770 3912 8.109705 TGCAAAATAATAGCAGACTTTCAAGA 57.890 30.769 0.00 0.00 33.75 3.02
3771 3913 8.575589 TGCAAAATAATAGCAGACTTTCAAGAA 58.424 29.630 0.00 0.00 33.75 2.52
3772 3914 9.578439 GCAAAATAATAGCAGACTTTCAAGAAT 57.422 29.630 0.00 0.00 0.00 2.40
3774 3916 9.578439 AAAATAATAGCAGACTTTCAAGAATGC 57.422 29.630 10.75 10.75 39.53 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.848932 CTCCGGCCATGCATGATTCG 61.849 60.000 28.31 23.84 0.00 3.34
19 20 1.786407 ATCCTCCGGCCATGCATGAT 61.786 55.000 28.31 7.83 0.00 2.45
31 32 4.473520 ACTTGCCGCCATCCTCCG 62.474 66.667 0.00 0.00 0.00 4.63
32 33 2.514824 GACTTGCCGCCATCCTCC 60.515 66.667 0.00 0.00 0.00 4.30
33 34 2.892425 CGACTTGCCGCCATCCTC 60.892 66.667 0.00 0.00 0.00 3.71
54 59 3.981308 CGACCCATTCCGCAGTTT 58.019 55.556 0.00 0.00 0.00 2.66
215 220 3.834610 CAGTTAACAGAGACCAGTACCG 58.165 50.000 8.61 0.00 0.00 4.02
216 221 3.006537 TGCAGTTAACAGAGACCAGTACC 59.993 47.826 8.61 0.00 0.00 3.34
222 227 2.271800 CCGATGCAGTTAACAGAGACC 58.728 52.381 8.61 0.00 0.00 3.85
232 237 0.659427 CATTGATCGCCGATGCAGTT 59.341 50.000 3.34 0.00 37.32 3.16
350 367 1.770294 AGTCCTGCACTCCTACTAGC 58.230 55.000 0.00 0.00 0.00 3.42
356 373 5.073437 AGATAATCTAGTCCTGCACTCCT 57.927 43.478 0.00 0.00 36.43 3.69
357 374 5.069781 ACAAGATAATCTAGTCCTGCACTCC 59.930 44.000 0.00 0.00 36.43 3.85
358 375 5.982516 CACAAGATAATCTAGTCCTGCACTC 59.017 44.000 0.00 0.00 36.43 3.51
359 376 5.683509 GCACAAGATAATCTAGTCCTGCACT 60.684 44.000 0.00 0.00 39.41 4.40
360 377 4.509600 GCACAAGATAATCTAGTCCTGCAC 59.490 45.833 0.00 0.00 0.00 4.57
361 378 4.406972 AGCACAAGATAATCTAGTCCTGCA 59.593 41.667 0.00 0.00 0.00 4.41
362 379 4.954875 AGCACAAGATAATCTAGTCCTGC 58.045 43.478 0.00 0.00 0.00 4.85
363 380 5.304101 AGGAGCACAAGATAATCTAGTCCTG 59.696 44.000 0.00 0.00 29.41 3.86
394 411 8.936864 GTGGGATTATCAGTAAGCATATTACAC 58.063 37.037 0.00 0.00 0.00 2.90
455 475 2.492001 CGTACTTGCGGAAATCGTTTG 58.508 47.619 0.00 0.00 41.72 2.93
467 487 1.351153 GAGAGCAGTTCCGTACTTGC 58.649 55.000 0.00 0.00 33.85 4.01
491 511 2.394563 GCTTTCACTCTCGGCTGGC 61.395 63.158 0.00 0.00 0.00 4.85
492 512 2.097038 CGCTTTCACTCTCGGCTGG 61.097 63.158 0.00 0.00 0.00 4.85
493 513 2.097038 CCGCTTTCACTCTCGGCTG 61.097 63.158 0.00 0.00 35.20 4.85
494 514 2.262915 CCGCTTTCACTCTCGGCT 59.737 61.111 0.00 0.00 35.20 5.52
542 562 5.066893 ACTGCTGATATCCGTTCGTTAACTA 59.933 40.000 3.71 0.00 33.15 2.24
544 564 4.026804 CACTGCTGATATCCGTTCGTTAAC 60.027 45.833 0.00 0.00 0.00 2.01
545 565 4.109766 CACTGCTGATATCCGTTCGTTAA 58.890 43.478 0.00 0.00 0.00 2.01
546 566 3.490249 CCACTGCTGATATCCGTTCGTTA 60.490 47.826 0.00 0.00 0.00 3.18
547 567 2.540515 CACTGCTGATATCCGTTCGTT 58.459 47.619 0.00 0.00 0.00 3.85
548 568 1.202417 CCACTGCTGATATCCGTTCGT 60.202 52.381 0.00 0.00 0.00 3.85
580 605 1.002430 GTTGTGAGATCCTCCTGTGCA 59.998 52.381 0.00 0.00 0.00 4.57
593 618 3.311871 GCAATAGCATCTCCTGTTGTGAG 59.688 47.826 0.00 0.00 41.58 3.51
636 661 2.764637 ATTCAACGAGGCACCCACCC 62.765 60.000 0.00 0.00 0.00 4.61
637 662 0.893727 AATTCAACGAGGCACCCACC 60.894 55.000 0.00 0.00 0.00 4.61
653 678 0.180171 TCGGCGTGATGGATCCAATT 59.820 50.000 20.67 2.17 0.00 2.32
655 680 1.829456 ATCGGCGTGATGGATCCAA 59.171 52.632 20.67 0.00 35.45 3.53
779 805 2.028112 TCGAATCTTCTCACAACTGGGG 60.028 50.000 0.00 0.00 0.00 4.96
804 831 5.728471 ACAGGATATAATGGCTCGAATGAG 58.272 41.667 0.00 0.00 45.49 2.90
1060 1106 4.978099 AGAGAGAGAGCAAGAGAGATAGG 58.022 47.826 0.00 0.00 0.00 2.57
1172 1234 1.080025 CTTCTTGGTCGTCGTCCCC 60.080 63.158 6.05 0.00 0.00 4.81
1174 1236 1.268899 TCTTCTTCTTGGTCGTCGTCC 59.731 52.381 1.17 1.17 0.00 4.79
1176 1238 2.621998 TCTTCTTCTTCTTGGTCGTCGT 59.378 45.455 0.00 0.00 0.00 4.34
1177 1239 3.058155 TCTCTTCTTCTTCTTGGTCGTCG 60.058 47.826 0.00 0.00 0.00 5.12
1325 1387 3.744719 CCGAGCCTGACGAACCGA 61.745 66.667 0.00 0.00 0.00 4.69
1357 1419 2.017559 GACCTGATCCTTCCGTCCGG 62.018 65.000 0.00 0.00 0.00 5.14
1361 1423 2.722201 GGCGACCTGATCCTTCCGT 61.722 63.158 0.00 0.00 0.00 4.69
1465 1548 5.388061 CGCAAAGTTTTCAATGATTGAGCAG 60.388 40.000 8.01 0.79 41.38 4.24
1470 1553 5.231779 TGACACGCAAAGTTTTCAATGATTG 59.768 36.000 0.00 0.00 0.00 2.67
1475 1558 4.025813 GCAATGACACGCAAAGTTTTCAAT 60.026 37.500 0.00 0.00 0.00 2.57
1476 1559 3.305629 GCAATGACACGCAAAGTTTTCAA 59.694 39.130 0.00 0.00 0.00 2.69
1483 1566 1.054348 CGACGCAATGACACGCAAAG 61.054 55.000 0.13 0.00 0.00 2.77
1617 1708 1.926511 GCACCTCGGCCATCTTGTTG 61.927 60.000 2.24 0.00 0.00 3.33
1869 1960 1.672356 CAGCGGGTTTCCTGTCAGG 60.672 63.158 13.21 13.21 36.46 3.86
2069 2160 6.262496 TCATGAGAGGAAGCAATCATTCAATC 59.738 38.462 0.00 0.00 30.09 2.67
2070 2161 6.127101 TCATGAGAGGAAGCAATCATTCAAT 58.873 36.000 0.00 0.00 30.09 2.57
2071 2162 5.503002 TCATGAGAGGAAGCAATCATTCAA 58.497 37.500 0.00 0.00 30.09 2.69
2072 2163 5.106876 TCATGAGAGGAAGCAATCATTCA 57.893 39.130 0.00 0.00 30.09 2.57
2118 2209 3.186909 TGCTACTACGCAACATCATGAC 58.813 45.455 0.00 0.00 36.89 3.06
2135 2226 7.938140 ATTATTTGCCTTCAGTTAACTGCTA 57.062 32.000 27.49 17.48 43.46 3.49
2136 2227 6.840780 ATTATTTGCCTTCAGTTAACTGCT 57.159 33.333 27.49 6.04 43.46 4.24
2137 2228 7.281991 CAATTATTTGCCTTCAGTTAACTGC 57.718 36.000 27.49 17.71 43.46 4.40
2170 2261 1.056103 CGACGACTGCACTCAGAAAG 58.944 55.000 0.00 0.00 42.95 2.62
2176 2268 2.502080 CCGACGACGACTGCACTC 60.502 66.667 9.28 0.00 42.66 3.51
2177 2269 2.976350 TCCGACGACGACTGCACT 60.976 61.111 9.28 0.00 42.66 4.40
2252 2356 2.809601 CACCGCCTCGCACTGTAC 60.810 66.667 0.00 0.00 0.00 2.90
2334 2450 3.898509 CCGCCTCTCCAGCTCGAG 61.899 72.222 8.45 8.45 0.00 4.04
2416 2532 1.682684 ATCACCTTCCTCTCCGCGT 60.683 57.895 4.92 0.00 0.00 6.01
2555 2683 2.609459 CACCGGATTCACTAATCACTGC 59.391 50.000 9.46 0.00 42.88 4.40
2562 2690 3.013921 GGAAATGCACCGGATTCACTAA 58.986 45.455 9.46 0.00 0.00 2.24
2663 2794 1.306825 ATCAGCCAGCCAGGAGTCT 60.307 57.895 0.00 0.00 41.22 3.24
2688 2819 2.114670 CCCGCCAGCACCAAGTATG 61.115 63.158 0.00 0.00 0.00 2.39
2782 2914 6.647481 ACACGTTATGTCACATAAGCAAACTA 59.353 34.615 10.68 0.00 36.54 2.24
2783 2915 5.468746 ACACGTTATGTCACATAAGCAAACT 59.531 36.000 10.68 0.00 36.54 2.66
2787 2919 6.254804 GTGATACACGTTATGTCACATAAGCA 59.745 38.462 10.68 0.00 42.09 3.91
2803 2942 1.336877 CACGACACCAGTGATACACG 58.663 55.000 4.48 5.02 41.83 4.49
2885 3024 3.120108 TGTCCCGATTAATCCCTTCCTT 58.880 45.455 9.87 0.00 0.00 3.36
2887 3026 3.570912 TTGTCCCGATTAATCCCTTCC 57.429 47.619 9.87 0.00 0.00 3.46
2894 3033 3.267483 CGTGTCCTTTGTCCCGATTAAT 58.733 45.455 0.00 0.00 0.00 1.40
2925 3064 1.294138 CCGTAAGAGGCCGAACCAA 59.706 57.895 0.00 0.00 43.14 3.67
2936 3075 3.325716 AGGCTTTTACCTTCACCGTAAGA 59.674 43.478 0.00 0.00 36.28 2.10
2976 3115 4.982295 CGTTATCGAGACATAAGCAATCCA 59.018 41.667 0.00 0.00 39.71 3.41
3242 3384 2.770802 CAAGACCACTCCTGGAGATGAT 59.229 50.000 29.71 11.47 40.55 2.45
3339 3481 6.131544 ACACTTGTAAACCAAACATGTCTC 57.868 37.500 0.00 0.00 34.17 3.36
3349 3491 7.613801 AGGCATGATAATAACACTTGTAAACCA 59.386 33.333 0.00 0.00 0.00 3.67
3355 3497 7.346471 AGGTTAGGCATGATAATAACACTTGT 58.654 34.615 0.00 0.00 31.25 3.16
3379 3521 4.771590 AACATGTTGTGGCATGACTAAG 57.228 40.909 11.07 0.00 46.65 2.18
3402 3544 3.005684 TGACAATGAACCAAACATCTGCC 59.994 43.478 0.00 0.00 0.00 4.85
3427 3569 1.166531 AAAGTCTCGCAGCCCACAAC 61.167 55.000 0.00 0.00 0.00 3.32
3428 3570 0.465460 AAAAGTCTCGCAGCCCACAA 60.465 50.000 0.00 0.00 0.00 3.33
3429 3571 1.148273 AAAAGTCTCGCAGCCCACA 59.852 52.632 0.00 0.00 0.00 4.17
3435 3577 0.716108 CGGCTACAAAAGTCTCGCAG 59.284 55.000 0.00 0.00 0.00 5.18
3439 3581 3.858247 ACCATACGGCTACAAAAGTCTC 58.142 45.455 0.00 0.00 34.57 3.36
3454 3596 9.191479 ACTAAGCCTATGATATGTAGACCATAC 57.809 37.037 0.00 0.00 38.83 2.39
3496 3638 7.541783 ACGAACAAAATGACCATCATAAATGTG 59.458 33.333 0.00 0.00 35.76 3.21
3497 3639 7.601856 ACGAACAAAATGACCATCATAAATGT 58.398 30.769 0.00 0.00 35.76 2.71
3519 3661 0.466372 TGCCACCCAAATTGTGACGA 60.466 50.000 0.00 0.00 35.74 4.20
3520 3662 0.039256 CTGCCACCCAAATTGTGACG 60.039 55.000 0.00 0.00 35.74 4.35
3542 3684 3.994931 ACTAAACCTTAGGCAATCCGT 57.005 42.857 0.00 0.00 37.47 4.69
3546 3688 5.381757 TGTCACAACTAAACCTTAGGCAAT 58.618 37.500 0.00 0.00 0.00 3.56
3550 3692 4.202430 ACCCTGTCACAACTAAACCTTAGG 60.202 45.833 0.00 0.00 0.00 2.69
3560 3702 3.072915 TCATGATGAACCCTGTCACAACT 59.927 43.478 0.00 0.00 0.00 3.16
3561 3703 3.411446 TCATGATGAACCCTGTCACAAC 58.589 45.455 0.00 0.00 0.00 3.32
3563 3705 3.786368 TTCATGATGAACCCTGTCACA 57.214 42.857 3.29 0.00 30.26 3.58
3574 3716 2.170166 GGCCTGTTTGGTTCATGATGA 58.830 47.619 0.00 0.00 38.35 2.92
3575 3717 1.205417 GGGCCTGTTTGGTTCATGATG 59.795 52.381 0.84 0.00 38.35 3.07
3576 3718 1.077663 AGGGCCTGTTTGGTTCATGAT 59.922 47.619 4.50 0.00 38.35 2.45
3577 3719 0.482446 AGGGCCTGTTTGGTTCATGA 59.518 50.000 4.50 0.00 38.35 3.07
3578 3720 2.094675 CTAGGGCCTGTTTGGTTCATG 58.905 52.381 18.53 0.00 38.35 3.07
3579 3721 1.992557 TCTAGGGCCTGTTTGGTTCAT 59.007 47.619 18.53 0.00 38.35 2.57
3580 3722 1.440618 TCTAGGGCCTGTTTGGTTCA 58.559 50.000 18.53 0.00 38.35 3.18
3581 3723 2.808906 ATCTAGGGCCTGTTTGGTTC 57.191 50.000 18.53 0.00 38.35 3.62
3582 3724 2.291605 GGAATCTAGGGCCTGTTTGGTT 60.292 50.000 18.53 6.09 38.35 3.67
3583 3725 1.285078 GGAATCTAGGGCCTGTTTGGT 59.715 52.381 18.53 0.00 38.35 3.67
3584 3726 1.410224 GGGAATCTAGGGCCTGTTTGG 60.410 57.143 18.53 1.09 39.35 3.28
3585 3727 1.284785 TGGGAATCTAGGGCCTGTTTG 59.715 52.381 18.53 3.75 0.00 2.93
3586 3728 1.681229 TGGGAATCTAGGGCCTGTTT 58.319 50.000 18.53 6.73 0.00 2.83
3587 3729 1.681229 TTGGGAATCTAGGGCCTGTT 58.319 50.000 18.53 8.40 0.00 3.16
3588 3730 1.912862 ATTGGGAATCTAGGGCCTGT 58.087 50.000 18.53 0.00 0.00 4.00
3589 3731 2.590821 CAATTGGGAATCTAGGGCCTG 58.409 52.381 18.53 6.47 0.00 4.85
3590 3732 1.133356 GCAATTGGGAATCTAGGGCCT 60.133 52.381 12.58 12.58 0.00 5.19
3591 3733 1.133356 AGCAATTGGGAATCTAGGGCC 60.133 52.381 7.72 0.00 0.00 5.80
3592 3734 2.371658 AGCAATTGGGAATCTAGGGC 57.628 50.000 7.72 0.00 0.00 5.19
3593 3735 4.990526 ACATAGCAATTGGGAATCTAGGG 58.009 43.478 7.72 0.00 0.00 3.53
3642 3784 3.197790 CCTGTTCATGCGGCTCCG 61.198 66.667 3.56 3.56 43.09 4.63
3643 3785 1.817099 CTCCTGTTCATGCGGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
3647 3789 0.320683 TGTGTCTCCTGTTCATGCGG 60.321 55.000 0.00 0.00 0.00 5.69
3648 3790 1.395954 CATGTGTCTCCTGTTCATGCG 59.604 52.381 0.00 0.00 31.49 4.73
3654 3796 4.701765 GAGATATGCATGTGTCTCCTGTT 58.298 43.478 19.69 0.00 32.83 3.16
3699 3841 9.582431 TTTGTTTGTACATTTGGTAATTTCGAA 57.418 25.926 0.00 0.00 33.44 3.71
3715 3857 9.128107 CATTGATGTCACCTATTTTGTTTGTAC 57.872 33.333 0.00 0.00 0.00 2.90
3716 3858 7.812191 GCATTGATGTCACCTATTTTGTTTGTA 59.188 33.333 0.00 0.00 0.00 2.41
3717 3859 6.646240 GCATTGATGTCACCTATTTTGTTTGT 59.354 34.615 0.00 0.00 0.00 2.83
3718 3860 6.091169 GGCATTGATGTCACCTATTTTGTTTG 59.909 38.462 0.00 0.00 31.41 2.93
3719 3861 6.165577 GGCATTGATGTCACCTATTTTGTTT 58.834 36.000 0.00 0.00 31.41 2.83
3720 3862 5.245751 TGGCATTGATGTCACCTATTTTGTT 59.754 36.000 0.00 0.00 37.51 2.83
3721 3863 4.771577 TGGCATTGATGTCACCTATTTTGT 59.228 37.500 0.00 0.00 37.51 2.83
3722 3864 5.327616 TGGCATTGATGTCACCTATTTTG 57.672 39.130 0.00 0.00 37.51 2.44
3723 3865 5.682990 GCATGGCATTGATGTCACCTATTTT 60.683 40.000 0.00 0.00 46.22 1.82
3724 3866 4.202182 GCATGGCATTGATGTCACCTATTT 60.202 41.667 0.00 0.00 46.22 1.40
3725 3867 3.319972 GCATGGCATTGATGTCACCTATT 59.680 43.478 0.00 0.00 46.22 1.73
3726 3868 2.889045 GCATGGCATTGATGTCACCTAT 59.111 45.455 0.00 0.00 46.22 2.57
3727 3869 2.300433 GCATGGCATTGATGTCACCTA 58.700 47.619 0.00 0.00 46.22 3.08
3728 3870 1.108776 GCATGGCATTGATGTCACCT 58.891 50.000 0.00 0.00 46.22 4.00
3729 3871 0.818938 TGCATGGCATTGATGTCACC 59.181 50.000 0.00 0.00 46.22 4.02
3730 3872 2.658373 TTGCATGGCATTGATGTCAC 57.342 45.000 0.00 0.00 46.22 3.67
3732 3874 6.854496 ATTATTTTGCATGGCATTGATGTC 57.146 33.333 0.00 0.00 38.76 3.06
3733 3875 6.425721 GCTATTATTTTGCATGGCATTGATGT 59.574 34.615 0.00 0.00 38.76 3.06
3734 3876 6.425417 TGCTATTATTTTGCATGGCATTGATG 59.575 34.615 0.00 0.00 38.76 3.07
3735 3877 6.526526 TGCTATTATTTTGCATGGCATTGAT 58.473 32.000 0.00 0.00 38.76 2.57
3736 3878 5.915175 TGCTATTATTTTGCATGGCATTGA 58.085 33.333 0.00 0.00 38.76 2.57
3737 3879 5.986741 TCTGCTATTATTTTGCATGGCATTG 59.013 36.000 0.00 0.00 38.76 2.82
3738 3880 5.987347 GTCTGCTATTATTTTGCATGGCATT 59.013 36.000 0.00 0.00 38.76 3.56
3739 3881 5.303589 AGTCTGCTATTATTTTGCATGGCAT 59.696 36.000 0.00 0.00 38.76 4.40
3740 3882 4.646040 AGTCTGCTATTATTTTGCATGGCA 59.354 37.500 0.00 0.00 35.75 4.92
3741 3883 5.192327 AGTCTGCTATTATTTTGCATGGC 57.808 39.130 0.00 0.00 36.07 4.40
3742 3884 7.259882 TGAAAGTCTGCTATTATTTTGCATGG 58.740 34.615 0.00 0.00 36.07 3.66
3743 3885 8.692110 TTGAAAGTCTGCTATTATTTTGCATG 57.308 30.769 0.00 0.00 36.07 4.06
3744 3886 8.742777 TCTTGAAAGTCTGCTATTATTTTGCAT 58.257 29.630 0.00 0.00 36.07 3.96
3745 3887 8.109705 TCTTGAAAGTCTGCTATTATTTTGCA 57.890 30.769 0.00 0.00 35.30 4.08
3746 3888 8.970691 TTCTTGAAAGTCTGCTATTATTTTGC 57.029 30.769 0.00 0.00 0.00 3.68
3748 3890 9.578439 GCATTCTTGAAAGTCTGCTATTATTTT 57.422 29.630 10.36 0.00 34.25 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.