Multiple sequence alignment - TraesCS6D01G135000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G135000 chr6D 100.000 4076 0 0 870 4945 103000956 103005031 0.000000e+00 7528.0
1 TraesCS6D01G135000 chr6D 100.000 286 0 0 1 286 103000087 103000372 3.390000e-146 529.0
2 TraesCS6D01G135000 chr6D 100.000 37 0 0 1 37 327001338 327001374 8.880000e-08 69.4
3 TraesCS6D01G135000 chr6D 100.000 37 0 0 1 37 380048008 380048044 8.880000e-08 69.4
4 TraesCS6D01G135000 chr6A 94.943 4054 134 34 913 4945 124265517 124269520 0.000000e+00 6285.0
5 TraesCS6D01G135000 chr6B 94.686 4046 152 29 907 4945 188666073 188670062 0.000000e+00 6222.0
6 TraesCS6D01G135000 chr4D 97.200 250 7 0 34 283 503682361 503682112 1.650000e-114 424.0
7 TraesCS6D01G135000 chr4D 96.400 250 9 0 34 283 50987011 50987260 3.560000e-111 412.0
8 TraesCS6D01G135000 chr4D 100.000 37 0 0 1 37 85740125 85740089 8.880000e-08 69.4
9 TraesCS6D01G135000 chr4D 100.000 37 0 0 1 37 98461325 98461361 8.880000e-08 69.4
10 TraesCS6D01G135000 chr4D 100.000 37 0 0 1 37 445348201 445348237 8.880000e-08 69.4
11 TraesCS6D01G135000 chr3D 97.200 250 7 0 34 283 15846611 15846362 1.650000e-114 424.0
12 TraesCS6D01G135000 chr3D 96.787 249 7 1 36 283 331073295 331073543 9.900000e-112 414.0
13 TraesCS6D01G135000 chr7D 96.800 250 8 0 34 283 102554619 102554370 7.660000e-113 418.0
14 TraesCS6D01G135000 chr7D 96.813 251 7 1 34 283 613121648 613121898 7.660000e-113 418.0
15 TraesCS6D01G135000 chr7D 76.190 357 60 19 3092 3435 606645666 606645322 1.100000e-36 165.0
16 TraesCS6D01G135000 chr5D 96.813 251 7 1 34 283 384426195 384425945 7.660000e-113 418.0
17 TraesCS6D01G135000 chr2D 96.800 250 8 0 34 283 537003380 537003629 7.660000e-113 418.0
18 TraesCS6D01G135000 chr2D 96.457 254 8 1 34 286 627335575 627335322 7.660000e-113 418.0
19 TraesCS6D01G135000 chr7B 75.542 323 55 16 2886 3199 690869531 690869224 2.400000e-28 137.0
20 TraesCS6D01G135000 chrUn 100.000 37 0 0 1 37 297868055 297868091 8.880000e-08 69.4
21 TraesCS6D01G135000 chr4B 100.000 37 0 0 1 37 43805121 43805085 8.880000e-08 69.4
22 TraesCS6D01G135000 chr1D 100.000 37 0 0 1 37 443108844 443108808 8.880000e-08 69.4
23 TraesCS6D01G135000 chr1D 100.000 37 0 0 1 37 476469087 476469123 8.880000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G135000 chr6D 103000087 103005031 4944 False 4028.5 7528 100.000 1 4945 2 chr6D.!!$F3 4944
1 TraesCS6D01G135000 chr6A 124265517 124269520 4003 False 6285.0 6285 94.943 913 4945 1 chr6A.!!$F1 4032
2 TraesCS6D01G135000 chr6B 188666073 188670062 3989 False 6222.0 6222 94.686 907 4945 1 chr6B.!!$F1 4038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.037590 AGCCATGCCTACAAAACCGA 59.962 50.0 0.0 0.0 0.00 4.69 F
255 256 0.105709 GGGAGAGGGGAAGAGAGGAG 60.106 65.0 0.0 0.0 0.00 3.69 F
264 265 0.179936 GAAGAGAGGAGGGGCACATG 59.820 60.0 0.0 0.0 0.00 3.21 F
271 272 0.181350 GGAGGGGCACATGTCTAAGG 59.819 60.0 0.0 0.0 0.00 2.69 F
272 273 0.181350 GAGGGGCACATGTCTAAGGG 59.819 60.0 0.0 0.0 0.00 3.95 F
274 275 0.331616 GGGGCACATGTCTAAGGGTT 59.668 55.0 0.0 0.0 0.00 4.11 F
889 890 0.409876 AGCACCAGACCAGGAGTAGA 59.590 55.0 0.0 0.0 0.00 2.59 F
2327 2340 0.608035 TTGATGGAGGGTTTGTCGCC 60.608 55.0 0.0 0.0 0.00 5.54 F
3307 3328 1.654317 ACGTGTAACCGCACTGAAAA 58.346 45.0 0.0 0.0 37.24 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1771 0.469892 AAACTGGAGCACCCCAAAGG 60.470 55.000 0.00 0.00 43.78 3.11 R
2189 2202 0.404040 CCACAAGGCCCTTCTTGGTA 59.596 55.000 11.25 0.00 46.04 3.25 R
2190 2203 1.153756 CCACAAGGCCCTTCTTGGT 59.846 57.895 11.25 0.00 46.04 3.67 R
2191 2204 4.102113 CCACAAGGCCCTTCTTGG 57.898 61.111 0.00 6.31 46.04 3.61 R
2416 2432 6.108015 ACATTTTCAGCAAGACACAACAATT 58.892 32.000 0.00 0.00 0.00 2.32 R
2444 2463 6.289834 TCATTCTGCCAAATCAACAACAATT 58.710 32.000 0.00 0.00 0.00 2.32 R
2918 2938 2.065007 TCCCTATGGATGATTGGTGGG 58.935 52.381 0.00 0.00 35.03 4.61 R
3371 3392 0.040204 CAACTGGCCTCCTTCCCAAT 59.960 55.000 3.32 0.00 0.00 3.16 R
4372 4396 0.103390 TCAAACGCCAACTCGAGACA 59.897 50.000 21.68 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.998530 ATGGAACCGGATGAAGCCA 59.001 52.632 9.46 0.00 0.00 4.75
19 20 0.552848 ATGGAACCGGATGAAGCCAT 59.447 50.000 9.46 2.00 35.29 4.40
20 21 0.394216 TGGAACCGGATGAAGCCATG 60.394 55.000 9.46 0.00 32.09 3.66
21 22 1.728490 GGAACCGGATGAAGCCATGC 61.728 60.000 9.46 0.00 37.71 4.06
22 23 1.728490 GAACCGGATGAAGCCATGCC 61.728 60.000 9.46 0.00 37.79 4.40
23 24 2.194056 CCGGATGAAGCCATGCCT 59.806 61.111 0.00 0.00 37.79 4.75
24 25 1.344953 ACCGGATGAAGCCATGCCTA 61.345 55.000 9.46 0.00 37.79 3.93
25 26 0.886490 CCGGATGAAGCCATGCCTAC 60.886 60.000 0.00 0.00 37.79 3.18
26 27 0.179048 CGGATGAAGCCATGCCTACA 60.179 55.000 0.00 0.00 37.79 2.74
27 28 1.746861 CGGATGAAGCCATGCCTACAA 60.747 52.381 0.00 0.00 37.79 2.41
28 29 2.378038 GGATGAAGCCATGCCTACAAA 58.622 47.619 0.00 0.00 35.39 2.83
29 30 2.760092 GGATGAAGCCATGCCTACAAAA 59.240 45.455 0.00 0.00 35.39 2.44
30 31 3.429410 GGATGAAGCCATGCCTACAAAAC 60.429 47.826 0.00 0.00 35.39 2.43
31 32 1.892474 TGAAGCCATGCCTACAAAACC 59.108 47.619 0.00 0.00 0.00 3.27
32 33 0.887933 AAGCCATGCCTACAAAACCG 59.112 50.000 0.00 0.00 0.00 4.44
33 34 0.037590 AGCCATGCCTACAAAACCGA 59.962 50.000 0.00 0.00 0.00 4.69
34 35 0.451783 GCCATGCCTACAAAACCGAG 59.548 55.000 0.00 0.00 0.00 4.63
35 36 1.948611 GCCATGCCTACAAAACCGAGA 60.949 52.381 0.00 0.00 0.00 4.04
36 37 2.432444 CCATGCCTACAAAACCGAGAA 58.568 47.619 0.00 0.00 0.00 2.87
37 38 2.420022 CCATGCCTACAAAACCGAGAAG 59.580 50.000 0.00 0.00 0.00 2.85
38 39 1.519408 TGCCTACAAAACCGAGAAGC 58.481 50.000 0.00 0.00 0.00 3.86
39 40 1.202710 TGCCTACAAAACCGAGAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
40 41 2.084546 GCCTACAAAACCGAGAAGCAT 58.915 47.619 0.00 0.00 0.00 3.79
41 42 3.267483 GCCTACAAAACCGAGAAGCATA 58.733 45.455 0.00 0.00 0.00 3.14
42 43 3.687698 GCCTACAAAACCGAGAAGCATAA 59.312 43.478 0.00 0.00 0.00 1.90
43 44 4.436986 GCCTACAAAACCGAGAAGCATAAC 60.437 45.833 0.00 0.00 0.00 1.89
44 45 4.693566 CCTACAAAACCGAGAAGCATAACA 59.306 41.667 0.00 0.00 0.00 2.41
45 46 5.354234 CCTACAAAACCGAGAAGCATAACAT 59.646 40.000 0.00 0.00 0.00 2.71
46 47 5.296813 ACAAAACCGAGAAGCATAACATC 57.703 39.130 0.00 0.00 0.00 3.06
47 48 4.759693 ACAAAACCGAGAAGCATAACATCA 59.240 37.500 0.00 0.00 0.00 3.07
48 49 5.415701 ACAAAACCGAGAAGCATAACATCAT 59.584 36.000 0.00 0.00 0.00 2.45
49 50 6.071952 ACAAAACCGAGAAGCATAACATCATT 60.072 34.615 0.00 0.00 0.00 2.57
50 51 5.741388 AACCGAGAAGCATAACATCATTC 57.259 39.130 0.00 0.00 0.00 2.67
51 52 4.769688 ACCGAGAAGCATAACATCATTCA 58.230 39.130 0.00 0.00 0.00 2.57
52 53 5.185454 ACCGAGAAGCATAACATCATTCAA 58.815 37.500 0.00 0.00 0.00 2.69
53 54 5.065218 ACCGAGAAGCATAACATCATTCAAC 59.935 40.000 0.00 0.00 0.00 3.18
54 55 5.065090 CCGAGAAGCATAACATCATTCAACA 59.935 40.000 0.00 0.00 0.00 3.33
55 56 5.961843 CGAGAAGCATAACATCATTCAACAC 59.038 40.000 0.00 0.00 0.00 3.32
56 57 6.402442 CGAGAAGCATAACATCATTCAACACA 60.402 38.462 0.00 0.00 0.00 3.72
57 58 7.218228 AGAAGCATAACATCATTCAACACAA 57.782 32.000 0.00 0.00 0.00 3.33
58 59 7.660112 AGAAGCATAACATCATTCAACACAAA 58.340 30.769 0.00 0.00 0.00 2.83
59 60 8.308931 AGAAGCATAACATCATTCAACACAAAT 58.691 29.630 0.00 0.00 0.00 2.32
60 61 8.836268 AAGCATAACATCATTCAACACAAATT 57.164 26.923 0.00 0.00 0.00 1.82
61 62 8.836268 AGCATAACATCATTCAACACAAATTT 57.164 26.923 0.00 0.00 0.00 1.82
62 63 8.714179 AGCATAACATCATTCAACACAAATTTG 58.286 29.630 16.67 16.67 0.00 2.32
63 64 7.479291 GCATAACATCATTCAACACAAATTTGC 59.521 33.333 18.12 0.00 0.00 3.68
64 65 6.922247 AACATCATTCAACACAAATTTGCA 57.078 29.167 18.12 0.00 0.00 4.08
65 66 6.922247 ACATCATTCAACACAAATTTGCAA 57.078 29.167 18.12 0.00 0.00 4.08
66 67 7.317842 ACATCATTCAACACAAATTTGCAAA 57.682 28.000 18.12 15.44 0.00 3.68
67 68 7.932335 ACATCATTCAACACAAATTTGCAAAT 58.068 26.923 18.99 18.99 0.00 2.32
68 69 8.071368 ACATCATTCAACACAAATTTGCAAATC 58.929 29.630 24.28 0.00 0.00 2.17
69 70 6.957150 TCATTCAACACAAATTTGCAAATCC 58.043 32.000 24.28 0.00 0.00 3.01
70 71 6.541278 TCATTCAACACAAATTTGCAAATCCA 59.459 30.769 24.28 0.00 0.00 3.41
71 72 6.748333 TTCAACACAAATTTGCAAATCCAA 57.252 29.167 24.28 0.00 0.00 3.53
72 73 6.360844 TCAACACAAATTTGCAAATCCAAG 57.639 33.333 24.28 16.50 0.00 3.61
73 74 4.816786 ACACAAATTTGCAAATCCAAGC 57.183 36.364 24.28 0.00 0.00 4.01
74 75 3.565063 ACACAAATTTGCAAATCCAAGCC 59.435 39.130 24.28 0.00 0.00 4.35
75 76 3.564644 CACAAATTTGCAAATCCAAGCCA 59.435 39.130 24.28 0.00 0.00 4.75
76 77 4.036498 CACAAATTTGCAAATCCAAGCCAA 59.964 37.500 24.28 0.00 0.00 4.52
77 78 4.643784 ACAAATTTGCAAATCCAAGCCAAA 59.356 33.333 24.28 0.00 0.00 3.28
78 79 5.216648 CAAATTTGCAAATCCAAGCCAAAG 58.783 37.500 24.28 2.85 0.00 2.77
79 80 1.881591 TTGCAAATCCAAGCCAAAGC 58.118 45.000 0.00 0.00 40.32 3.51
90 91 2.579878 GCCAAAGCTAGGGTTTCCC 58.420 57.895 7.20 0.00 39.15 3.97
91 92 0.970937 GCCAAAGCTAGGGTTTCCCC 60.971 60.000 7.20 0.00 43.57 4.81
92 93 3.636268 GCCAAAGCTAGGGTTTCCCCA 62.636 57.143 7.20 0.00 44.87 4.96
103 104 3.801307 GGTTTCCCCAAAGTAGGAAGA 57.199 47.619 0.00 0.00 42.91 2.87
104 105 4.317530 GGTTTCCCCAAAGTAGGAAGAT 57.682 45.455 0.00 0.00 42.91 2.40
105 106 4.673968 GGTTTCCCCAAAGTAGGAAGATT 58.326 43.478 0.00 0.00 42.91 2.40
106 107 5.084519 GGTTTCCCCAAAGTAGGAAGATTT 58.915 41.667 0.00 0.00 42.91 2.17
107 108 5.047306 GGTTTCCCCAAAGTAGGAAGATTTG 60.047 44.000 0.00 0.00 42.91 2.32
108 109 5.592587 TTCCCCAAAGTAGGAAGATTTGA 57.407 39.130 0.00 0.00 37.23 2.69
109 110 5.179452 TCCCCAAAGTAGGAAGATTTGAG 57.821 43.478 0.00 0.00 36.28 3.02
110 111 3.696548 CCCCAAAGTAGGAAGATTTGAGC 59.303 47.826 0.00 0.00 36.28 4.26
111 112 4.335416 CCCAAAGTAGGAAGATTTGAGCA 58.665 43.478 0.00 0.00 36.28 4.26
112 113 4.766891 CCCAAAGTAGGAAGATTTGAGCAA 59.233 41.667 0.00 0.00 36.28 3.91
113 114 5.243730 CCCAAAGTAGGAAGATTTGAGCAAA 59.756 40.000 0.00 0.00 36.28 3.68
114 115 6.071165 CCCAAAGTAGGAAGATTTGAGCAAAT 60.071 38.462 8.09 8.09 43.14 2.32
115 116 6.810182 CCAAAGTAGGAAGATTTGAGCAAATG 59.190 38.462 12.73 0.00 40.77 2.32
116 117 7.373493 CAAAGTAGGAAGATTTGAGCAAATGT 58.627 34.615 12.73 6.48 40.77 2.71
117 118 6.506500 AGTAGGAAGATTTGAGCAAATGTG 57.493 37.500 12.73 0.00 40.77 3.21
118 119 6.240894 AGTAGGAAGATTTGAGCAAATGTGA 58.759 36.000 12.73 0.00 40.77 3.58
119 120 5.382618 AGGAAGATTTGAGCAAATGTGAC 57.617 39.130 12.73 6.27 40.77 3.67
120 121 4.828939 AGGAAGATTTGAGCAAATGTGACA 59.171 37.500 12.73 0.00 40.77 3.58
121 122 5.302568 AGGAAGATTTGAGCAAATGTGACAA 59.697 36.000 12.73 0.00 40.77 3.18
122 123 6.014840 AGGAAGATTTGAGCAAATGTGACAAT 60.015 34.615 12.73 0.00 40.77 2.71
123 124 6.647895 GGAAGATTTGAGCAAATGTGACAATT 59.352 34.615 12.73 0.00 40.77 2.32
124 125 7.148689 GGAAGATTTGAGCAAATGTGACAATTC 60.149 37.037 12.73 3.24 40.77 2.17
125 126 6.161381 AGATTTGAGCAAATGTGACAATTCC 58.839 36.000 12.73 0.00 40.77 3.01
126 127 5.534207 TTTGAGCAAATGTGACAATTCCT 57.466 34.783 0.00 0.00 0.00 3.36
127 128 6.647334 TTTGAGCAAATGTGACAATTCCTA 57.353 33.333 0.00 0.00 0.00 2.94
128 129 6.839124 TTGAGCAAATGTGACAATTCCTAT 57.161 33.333 0.00 0.00 0.00 2.57
129 130 6.198650 TGAGCAAATGTGACAATTCCTATG 57.801 37.500 0.00 0.00 0.00 2.23
130 131 5.125900 TGAGCAAATGTGACAATTCCTATGG 59.874 40.000 0.00 0.00 0.00 2.74
131 132 5.263599 AGCAAATGTGACAATTCCTATGGA 58.736 37.500 0.00 0.00 0.00 3.41
132 133 5.895534 AGCAAATGTGACAATTCCTATGGAT 59.104 36.000 0.00 0.00 0.00 3.41
133 134 5.981315 GCAAATGTGACAATTCCTATGGATG 59.019 40.000 0.00 0.00 0.00 3.51
134 135 6.183360 GCAAATGTGACAATTCCTATGGATGA 60.183 38.462 0.00 0.00 0.00 2.92
135 136 7.631161 GCAAATGTGACAATTCCTATGGATGAA 60.631 37.037 0.00 0.00 0.00 2.57
136 137 7.959658 AATGTGACAATTCCTATGGATGAAA 57.040 32.000 0.00 0.00 0.00 2.69
137 138 7.959658 ATGTGACAATTCCTATGGATGAAAA 57.040 32.000 0.00 0.00 0.00 2.29
138 139 7.156876 TGTGACAATTCCTATGGATGAAAAC 57.843 36.000 0.00 0.00 0.00 2.43
139 140 6.128035 TGTGACAATTCCTATGGATGAAAACG 60.128 38.462 0.00 0.00 0.00 3.60
140 141 6.093495 GTGACAATTCCTATGGATGAAAACGA 59.907 38.462 0.00 0.00 0.00 3.85
141 142 6.316140 TGACAATTCCTATGGATGAAAACGAG 59.684 38.462 0.00 0.00 0.00 4.18
142 143 5.590259 ACAATTCCTATGGATGAAAACGAGG 59.410 40.000 0.00 0.00 0.00 4.63
143 144 3.838244 TCCTATGGATGAAAACGAGGG 57.162 47.619 0.00 0.00 0.00 4.30
144 145 2.438021 TCCTATGGATGAAAACGAGGGG 59.562 50.000 0.00 0.00 0.00 4.79
145 146 2.438021 CCTATGGATGAAAACGAGGGGA 59.562 50.000 0.00 0.00 0.00 4.81
146 147 3.073062 CCTATGGATGAAAACGAGGGGAT 59.927 47.826 0.00 0.00 0.00 3.85
147 148 2.710096 TGGATGAAAACGAGGGGATC 57.290 50.000 0.00 0.00 0.00 3.36
157 158 3.466714 GAGGGGATCGGAGGAGATT 57.533 57.895 0.00 0.00 0.00 2.40
158 159 2.606751 GAGGGGATCGGAGGAGATTA 57.393 55.000 0.00 0.00 0.00 1.75
159 160 2.172679 GAGGGGATCGGAGGAGATTAC 58.827 57.143 0.00 0.00 0.00 1.89
160 161 1.203199 AGGGGATCGGAGGAGATTACC 60.203 57.143 0.00 0.00 0.00 2.85
161 162 1.203199 GGGGATCGGAGGAGATTACCT 60.203 57.143 0.00 0.00 43.64 3.08
162 163 2.610873 GGGATCGGAGGAGATTACCTT 58.389 52.381 0.00 0.00 40.73 3.50
163 164 3.501751 GGGGATCGGAGGAGATTACCTTA 60.502 52.174 0.00 0.00 40.73 2.69
164 165 4.158015 GGGATCGGAGGAGATTACCTTAA 58.842 47.826 0.00 0.00 40.73 1.85
165 166 4.221041 GGGATCGGAGGAGATTACCTTAAG 59.779 50.000 0.00 0.00 40.73 1.85
166 167 4.221041 GGATCGGAGGAGATTACCTTAAGG 59.779 50.000 20.42 20.42 40.73 2.69
167 168 3.573695 TCGGAGGAGATTACCTTAAGGG 58.426 50.000 25.31 7.85 40.73 3.95
168 169 3.205959 TCGGAGGAGATTACCTTAAGGGA 59.794 47.826 25.31 15.27 40.73 4.20
169 170 3.574826 CGGAGGAGATTACCTTAAGGGAG 59.425 52.174 25.31 0.91 40.73 4.30
170 171 3.904965 GGAGGAGATTACCTTAAGGGAGG 59.095 52.174 25.31 1.03 40.73 4.30
171 172 3.904965 GAGGAGATTACCTTAAGGGAGGG 59.095 52.174 25.31 0.97 41.31 4.30
172 173 2.980379 GGAGATTACCTTAAGGGAGGGG 59.020 54.545 25.31 0.19 41.31 4.79
173 174 3.635531 GGAGATTACCTTAAGGGAGGGGT 60.636 52.174 25.31 6.76 41.31 4.95
174 175 4.045736 GAGATTACCTTAAGGGAGGGGTT 58.954 47.826 25.31 5.15 41.31 4.11
175 176 3.786450 AGATTACCTTAAGGGAGGGGTTG 59.214 47.826 25.31 0.00 41.31 3.77
176 177 1.975471 TACCTTAAGGGAGGGGTTGG 58.025 55.000 25.31 0.00 41.31 3.77
177 178 1.306633 CCTTAAGGGAGGGGTTGGC 59.693 63.158 14.25 0.00 37.23 4.52
178 179 1.214992 CCTTAAGGGAGGGGTTGGCT 61.215 60.000 14.25 0.00 37.23 4.75
179 180 0.704664 CTTAAGGGAGGGGTTGGCTT 59.295 55.000 0.00 0.00 0.00 4.35
180 181 0.702316 TTAAGGGAGGGGTTGGCTTC 59.298 55.000 0.00 0.00 0.00 3.86
181 182 1.559065 TAAGGGAGGGGTTGGCTTCG 61.559 60.000 0.00 0.00 0.00 3.79
182 183 3.327404 GGGAGGGGTTGGCTTCGA 61.327 66.667 0.00 0.00 0.00 3.71
183 184 2.754375 GGAGGGGTTGGCTTCGAA 59.246 61.111 0.00 0.00 0.00 3.71
184 185 1.074248 GGAGGGGTTGGCTTCGAAA 59.926 57.895 0.00 0.00 0.00 3.46
185 186 0.323451 GGAGGGGTTGGCTTCGAAAT 60.323 55.000 0.00 0.00 0.00 2.17
186 187 1.095600 GAGGGGTTGGCTTCGAAATC 58.904 55.000 0.00 0.00 0.00 2.17
187 188 0.323451 AGGGGTTGGCTTCGAAATCC 60.323 55.000 0.00 4.20 0.00 3.01
188 189 0.610785 GGGGTTGGCTTCGAAATCCA 60.611 55.000 13.11 13.11 0.00 3.41
189 190 0.526211 GGGTTGGCTTCGAAATCCAC 59.474 55.000 15.89 11.75 0.00 4.02
190 191 0.168128 GGTTGGCTTCGAAATCCACG 59.832 55.000 15.89 0.00 0.00 4.94
191 192 0.168128 GTTGGCTTCGAAATCCACGG 59.832 55.000 15.89 0.00 0.00 4.94
192 193 0.250553 TTGGCTTCGAAATCCACGGT 60.251 50.000 15.89 0.00 0.00 4.83
193 194 0.672401 TGGCTTCGAAATCCACGGTC 60.672 55.000 13.11 0.00 0.00 4.79
194 195 0.672401 GGCTTCGAAATCCACGGTCA 60.672 55.000 10.32 0.00 0.00 4.02
195 196 1.153353 GCTTCGAAATCCACGGTCAA 58.847 50.000 0.00 0.00 0.00 3.18
196 197 1.533731 GCTTCGAAATCCACGGTCAAA 59.466 47.619 0.00 0.00 0.00 2.69
197 198 2.161609 GCTTCGAAATCCACGGTCAAAT 59.838 45.455 0.00 0.00 0.00 2.32
198 199 3.372822 GCTTCGAAATCCACGGTCAAATA 59.627 43.478 0.00 0.00 0.00 1.40
199 200 4.726876 GCTTCGAAATCCACGGTCAAATAC 60.727 45.833 0.00 0.00 0.00 1.89
200 201 4.196626 TCGAAATCCACGGTCAAATACT 57.803 40.909 0.00 0.00 0.00 2.12
201 202 4.178540 TCGAAATCCACGGTCAAATACTC 58.821 43.478 0.00 0.00 0.00 2.59
202 203 3.308866 CGAAATCCACGGTCAAATACTCC 59.691 47.826 0.00 0.00 0.00 3.85
209 210 3.944422 CGGTCAAATACTCCGGATTTG 57.056 47.619 18.83 18.83 42.94 2.32
210 211 2.031683 CGGTCAAATACTCCGGATTTGC 59.968 50.000 19.72 15.29 41.86 3.68
211 212 3.013921 GGTCAAATACTCCGGATTTGCA 58.986 45.455 19.72 9.45 41.86 4.08
212 213 3.442273 GGTCAAATACTCCGGATTTGCAA 59.558 43.478 19.72 0.00 41.86 4.08
213 214 4.438744 GGTCAAATACTCCGGATTTGCAAG 60.439 45.833 19.72 3.87 41.86 4.01
214 215 4.394920 GTCAAATACTCCGGATTTGCAAGA 59.605 41.667 19.72 5.52 41.86 3.02
215 216 5.066505 GTCAAATACTCCGGATTTGCAAGAT 59.933 40.000 19.72 0.00 41.86 2.40
216 217 5.652014 TCAAATACTCCGGATTTGCAAGATT 59.348 36.000 19.72 2.50 41.86 2.40
217 218 6.152661 TCAAATACTCCGGATTTGCAAGATTT 59.847 34.615 19.72 7.81 41.86 2.17
218 219 3.855689 ACTCCGGATTTGCAAGATTTG 57.144 42.857 3.57 0.00 0.00 2.32
219 220 3.420893 ACTCCGGATTTGCAAGATTTGA 58.579 40.909 3.57 0.00 0.00 2.69
220 221 3.441572 ACTCCGGATTTGCAAGATTTGAG 59.558 43.478 3.57 7.44 0.00 3.02
221 222 3.684908 TCCGGATTTGCAAGATTTGAGA 58.315 40.909 0.00 0.00 0.00 3.27
222 223 4.078537 TCCGGATTTGCAAGATTTGAGAA 58.921 39.130 0.00 0.00 0.00 2.87
223 224 4.156556 TCCGGATTTGCAAGATTTGAGAAG 59.843 41.667 0.00 0.00 0.00 2.85
224 225 4.418392 CGGATTTGCAAGATTTGAGAAGG 58.582 43.478 0.00 0.00 0.00 3.46
225 226 4.676196 CGGATTTGCAAGATTTGAGAAGGG 60.676 45.833 0.00 0.00 0.00 3.95
226 227 4.221482 GGATTTGCAAGATTTGAGAAGGGT 59.779 41.667 0.00 0.00 0.00 4.34
227 228 5.279657 GGATTTGCAAGATTTGAGAAGGGTT 60.280 40.000 0.00 0.00 0.00 4.11
228 229 5.612725 TTTGCAAGATTTGAGAAGGGTTT 57.387 34.783 0.00 0.00 0.00 3.27
229 230 6.723298 TTTGCAAGATTTGAGAAGGGTTTA 57.277 33.333 0.00 0.00 0.00 2.01
230 231 6.723298 TTGCAAGATTTGAGAAGGGTTTAA 57.277 33.333 0.00 0.00 0.00 1.52
231 232 6.331369 TGCAAGATTTGAGAAGGGTTTAAG 57.669 37.500 0.00 0.00 0.00 1.85
232 233 6.068010 TGCAAGATTTGAGAAGGGTTTAAGA 58.932 36.000 0.00 0.00 0.00 2.10
233 234 6.207417 TGCAAGATTTGAGAAGGGTTTAAGAG 59.793 38.462 0.00 0.00 0.00 2.85
234 235 6.349694 GCAAGATTTGAGAAGGGTTTAAGAGG 60.350 42.308 0.00 0.00 0.00 3.69
235 236 5.821097 AGATTTGAGAAGGGTTTAAGAGGG 58.179 41.667 0.00 0.00 0.00 4.30
236 237 4.382386 TTTGAGAAGGGTTTAAGAGGGG 57.618 45.455 0.00 0.00 0.00 4.79
237 238 2.275466 TGAGAAGGGTTTAAGAGGGGG 58.725 52.381 0.00 0.00 0.00 5.40
251 252 3.120191 GGGGGAGAGGGGAAGAGA 58.880 66.667 0.00 0.00 0.00 3.10
252 253 1.074850 GGGGGAGAGGGGAAGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
253 254 1.074850 GGGGAGAGGGGAAGAGAGG 60.075 68.421 0.00 0.00 0.00 3.69
254 255 1.595058 GGGGAGAGGGGAAGAGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
255 256 0.105709 GGGAGAGGGGAAGAGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
256 257 0.105709 GGAGAGGGGAAGAGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
257 258 0.105709 GAGAGGGGAAGAGAGGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
258 259 1.074850 GAGGGGAAGAGAGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
259 260 2.770475 GGGGAAGAGAGGAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
260 261 2.041265 GGGAAGAGAGGAGGGGCA 59.959 66.667 0.00 0.00 0.00 5.36
261 262 2.371259 GGGAAGAGAGGAGGGGCAC 61.371 68.421 0.00 0.00 0.00 5.01
262 263 1.613630 GGAAGAGAGGAGGGGCACA 60.614 63.158 0.00 0.00 0.00 4.57
263 264 0.985490 GGAAGAGAGGAGGGGCACAT 60.985 60.000 0.00 0.00 0.00 3.21
264 265 0.179936 GAAGAGAGGAGGGGCACATG 59.820 60.000 0.00 0.00 0.00 3.21
265 266 0.548682 AAGAGAGGAGGGGCACATGT 60.549 55.000 0.00 0.00 0.00 3.21
266 267 0.980231 AGAGAGGAGGGGCACATGTC 60.980 60.000 0.00 0.00 0.00 3.06
267 268 0.980231 GAGAGGAGGGGCACATGTCT 60.980 60.000 0.00 0.00 0.00 3.41
268 269 0.339859 AGAGGAGGGGCACATGTCTA 59.660 55.000 0.00 0.00 0.00 2.59
269 270 1.204146 GAGGAGGGGCACATGTCTAA 58.796 55.000 0.00 0.00 0.00 2.10
270 271 1.139853 GAGGAGGGGCACATGTCTAAG 59.860 57.143 0.00 0.00 0.00 2.18
271 272 0.181350 GGAGGGGCACATGTCTAAGG 59.819 60.000 0.00 0.00 0.00 2.69
272 273 0.181350 GAGGGGCACATGTCTAAGGG 59.819 60.000 0.00 0.00 0.00 3.95
273 274 0.550147 AGGGGCACATGTCTAAGGGT 60.550 55.000 0.00 0.00 0.00 4.34
274 275 0.331616 GGGGCACATGTCTAAGGGTT 59.668 55.000 0.00 0.00 0.00 4.11
275 276 1.463674 GGGCACATGTCTAAGGGTTG 58.536 55.000 0.00 0.00 0.00 3.77
276 277 1.463674 GGCACATGTCTAAGGGTTGG 58.536 55.000 0.00 0.00 0.00 3.77
277 278 1.463674 GCACATGTCTAAGGGTTGGG 58.536 55.000 0.00 0.00 0.00 4.12
278 279 1.271926 GCACATGTCTAAGGGTTGGGT 60.272 52.381 0.00 0.00 0.00 4.51
279 280 2.436417 CACATGTCTAAGGGTTGGGTG 58.564 52.381 0.00 0.00 0.00 4.61
280 281 1.354368 ACATGTCTAAGGGTTGGGTGG 59.646 52.381 0.00 0.00 0.00 4.61
281 282 0.999712 ATGTCTAAGGGTTGGGTGGG 59.000 55.000 0.00 0.00 0.00 4.61
282 283 1.137594 TGTCTAAGGGTTGGGTGGGG 61.138 60.000 0.00 0.00 0.00 4.96
283 284 1.542881 TCTAAGGGTTGGGTGGGGG 60.543 63.158 0.00 0.00 0.00 5.40
284 285 1.855451 CTAAGGGTTGGGTGGGGGT 60.855 63.158 0.00 0.00 0.00 4.95
285 286 2.150014 CTAAGGGTTGGGTGGGGGTG 62.150 65.000 0.00 0.00 0.00 4.61
886 887 3.476386 CAGCACCAGACCAGGAGT 58.524 61.111 0.00 0.00 0.00 3.85
887 888 2.671145 CAGCACCAGACCAGGAGTA 58.329 57.895 0.00 0.00 0.00 2.59
888 889 0.534412 CAGCACCAGACCAGGAGTAG 59.466 60.000 0.00 0.00 0.00 2.57
889 890 0.409876 AGCACCAGACCAGGAGTAGA 59.590 55.000 0.00 0.00 0.00 2.59
890 891 0.820871 GCACCAGACCAGGAGTAGAG 59.179 60.000 0.00 0.00 0.00 2.43
891 892 1.617263 GCACCAGACCAGGAGTAGAGA 60.617 57.143 0.00 0.00 0.00 3.10
892 893 2.374184 CACCAGACCAGGAGTAGAGAG 58.626 57.143 0.00 0.00 0.00 3.20
893 894 2.025793 CACCAGACCAGGAGTAGAGAGA 60.026 54.545 0.00 0.00 0.00 3.10
894 895 2.241176 ACCAGACCAGGAGTAGAGAGAG 59.759 54.545 0.00 0.00 0.00 3.20
895 896 2.507886 CCAGACCAGGAGTAGAGAGAGA 59.492 54.545 0.00 0.00 0.00 3.10
896 897 3.433598 CCAGACCAGGAGTAGAGAGAGAG 60.434 56.522 0.00 0.00 0.00 3.20
897 898 3.454447 CAGACCAGGAGTAGAGAGAGAGA 59.546 52.174 0.00 0.00 0.00 3.10
898 899 3.711704 AGACCAGGAGTAGAGAGAGAGAG 59.288 52.174 0.00 0.00 0.00 3.20
899 900 3.709653 GACCAGGAGTAGAGAGAGAGAGA 59.290 52.174 0.00 0.00 0.00 3.10
900 901 3.711704 ACCAGGAGTAGAGAGAGAGAGAG 59.288 52.174 0.00 0.00 0.00 3.20
901 902 3.967326 CCAGGAGTAGAGAGAGAGAGAGA 59.033 52.174 0.00 0.00 0.00 3.10
902 903 4.039730 CCAGGAGTAGAGAGAGAGAGAGAG 59.960 54.167 0.00 0.00 0.00 3.20
903 904 4.895889 CAGGAGTAGAGAGAGAGAGAGAGA 59.104 50.000 0.00 0.00 0.00 3.10
904 905 5.010516 CAGGAGTAGAGAGAGAGAGAGAGAG 59.989 52.000 0.00 0.00 0.00 3.20
905 906 5.103473 AGGAGTAGAGAGAGAGAGAGAGAGA 60.103 48.000 0.00 0.00 0.00 3.10
906 907 5.242838 GGAGTAGAGAGAGAGAGAGAGAGAG 59.757 52.000 0.00 0.00 0.00 3.20
907 908 6.019656 AGTAGAGAGAGAGAGAGAGAGAGA 57.980 45.833 0.00 0.00 0.00 3.10
908 909 6.068010 AGTAGAGAGAGAGAGAGAGAGAGAG 58.932 48.000 0.00 0.00 0.00 3.20
909 910 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
910 911 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
911 912 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
912 913 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
913 914 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
914 915 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
915 916 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
916 917 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
917 918 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
918 919 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
919 920 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
920 921 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
921 922 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
935 936 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
936 937 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
1275 1277 1.730446 GCAGCTGGATCAACGCTTTTC 60.730 52.381 17.12 0.00 0.00 2.29
1347 1352 1.093159 CTGATTCTTGCCCTGTGCTC 58.907 55.000 0.00 0.00 42.00 4.26
1369 1374 1.503542 CATTTGCTCGCCTGTGGAC 59.496 57.895 0.00 0.00 0.00 4.02
1415 1421 2.519013 GGGAAACATTCTCTTGCCTGT 58.481 47.619 0.00 0.00 30.81 4.00
1623 1630 7.234661 TGGAATGGTTGGAAAAATTACTACC 57.765 36.000 0.00 0.00 0.00 3.18
1717 1730 7.969387 TCGTTGCATTAAATTCAATTAGAGC 57.031 32.000 0.00 0.00 0.00 4.09
1720 1733 7.304849 CGTTGCATTAAATTCAATTAGAGCGTC 60.305 37.037 0.00 0.00 0.00 5.19
1774 1787 2.677875 GCCTTTGGGGTGCTCCAG 60.678 66.667 7.20 0.00 38.17 3.86
2048 2061 0.954452 CCCAAAGCACAGGTCTTGAC 59.046 55.000 0.00 0.00 0.00 3.18
2063 2076 4.376146 GTCTTGACACTCTTCTTGCTCTT 58.624 43.478 0.00 0.00 0.00 2.85
2064 2077 5.509840 GGTCTTGACACTCTTCTTGCTCTTA 60.510 44.000 3.08 0.00 0.00 2.10
2068 2081 5.292765 TGACACTCTTCTTGCTCTTAGTTG 58.707 41.667 0.00 0.00 0.00 3.16
2090 2103 6.065976 TGATTGGTTCTGATGTATCCAAGT 57.934 37.500 0.00 0.00 40.67 3.16
2189 2202 4.042187 AGGTTCAACTCATTCAAGGCTACT 59.958 41.667 0.00 0.00 0.00 2.57
2190 2203 5.248477 AGGTTCAACTCATTCAAGGCTACTA 59.752 40.000 0.00 0.00 0.00 1.82
2191 2204 5.351740 GGTTCAACTCATTCAAGGCTACTAC 59.648 44.000 0.00 0.00 0.00 2.73
2327 2340 0.608035 TTGATGGAGGGTTTGTCGCC 60.608 55.000 0.00 0.00 0.00 5.54
2395 2408 7.884877 AGAATTTGAGGTGATGATTGTGTTCTA 59.115 33.333 0.00 0.00 0.00 2.10
2396 2409 6.801539 TTTGAGGTGATGATTGTGTTCTAC 57.198 37.500 0.00 0.00 0.00 2.59
2397 2410 5.745312 TGAGGTGATGATTGTGTTCTACT 57.255 39.130 0.00 0.00 0.00 2.57
2398 2411 5.482006 TGAGGTGATGATTGTGTTCTACTG 58.518 41.667 0.00 0.00 0.00 2.74
2399 2412 5.012046 TGAGGTGATGATTGTGTTCTACTGT 59.988 40.000 0.00 0.00 0.00 3.55
2444 2463 7.093354 TGTTGTGTCTTGCTGAAAATGTTTTA 58.907 30.769 0.00 0.00 0.00 1.52
2775 2795 3.875727 ACATTCGGATGAAGATTGCTCTG 59.124 43.478 11.64 0.00 37.57 3.35
2918 2938 3.741344 AGTATCTTCACGAACACTGCAAC 59.259 43.478 0.00 0.00 0.00 4.17
3084 3105 8.237811 ACAAAACAGTTCATTAATCCTCTGTT 57.762 30.769 16.33 16.33 44.37 3.16
3306 3327 2.505628 TACGTGTAACCGCACTGAAA 57.494 45.000 0.00 0.00 37.24 2.69
3307 3328 1.654317 ACGTGTAACCGCACTGAAAA 58.346 45.000 0.00 0.00 37.24 2.29
3371 3392 6.482524 TGGAGTAGTACTTCTTGAGCTTCTA 58.517 40.000 10.04 0.00 0.00 2.10
3377 3398 5.721960 AGTACTTCTTGAGCTTCTATTGGGA 59.278 40.000 0.00 0.00 0.00 4.37
3450 3471 6.817184 ACATGGGTACACACTATTCTGATAC 58.183 40.000 0.00 0.00 0.00 2.24
3492 3513 6.317391 AGCTAGAATTGATCCAGTTAAACAGC 59.683 38.462 0.00 0.00 0.00 4.40
3590 3612 6.699575 AGCATCTGACATATTTGGGTTTAC 57.300 37.500 0.00 0.00 0.00 2.01
3647 3669 1.900486 CTCCCTACCATAATCGACCCC 59.100 57.143 0.00 0.00 0.00 4.95
3710 3733 6.885922 AGTACTACCCATCACTGAAATTACC 58.114 40.000 0.00 0.00 0.00 2.85
3757 3780 8.418662 ACATCTGTTGTCACAACTAACTAGTTA 58.581 33.333 21.23 14.52 38.07 2.24
3758 3781 9.424319 CATCTGTTGTCACAACTAACTAGTTAT 57.576 33.333 21.23 0.00 44.19 1.89
3845 3868 1.209019 AGGCCACTGATCACAGATGTC 59.791 52.381 5.01 0.00 46.03 3.06
3961 3984 5.118664 CGTGCTGAGAAATAAAAACGAGAGA 59.881 40.000 0.00 0.00 31.76 3.10
4008 4031 1.586154 GGGCTCACACCGTCCAAATG 61.586 60.000 0.00 0.00 0.00 2.32
4095 4118 1.066215 TGTCTGATGATGTGTTCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
4115 4138 2.231478 CGACCTTGTGAGACCTACACAT 59.769 50.000 0.00 0.00 45.52 3.21
4143 4166 6.861065 TGTTGGTTGAGTTGATAGAGTTTC 57.139 37.500 0.00 0.00 0.00 2.78
4171 4194 2.508526 GCAAAGAAGAGGACCACACAT 58.491 47.619 0.00 0.00 0.00 3.21
4172 4195 3.674997 GCAAAGAAGAGGACCACACATA 58.325 45.455 0.00 0.00 0.00 2.29
4260 4284 4.933330 TCTGAACACCGCTGTATAGATTC 58.067 43.478 0.00 0.00 0.00 2.52
4372 4396 4.065088 TGATGCTTTGAGCTCGTTAAACT 58.935 39.130 9.64 0.00 42.97 2.66
4395 4419 1.457303 CTCGAGTTGGCGTTTGAAGAG 59.543 52.381 3.62 0.00 0.00 2.85
4399 4423 2.612212 GAGTTGGCGTTTGAAGAGTGAA 59.388 45.455 0.00 0.00 0.00 3.18
4407 4431 3.187227 CGTTTGAAGAGTGAACCATGAGG 59.813 47.826 0.00 0.00 42.21 3.86
4432 4456 2.266055 CGTGGCTCAGGGAGTTCC 59.734 66.667 0.00 0.00 31.39 3.62
4449 4473 5.061721 AGTTCCTTGTTACCCTTGTTCAT 57.938 39.130 0.00 0.00 0.00 2.57
4468 4492 9.781834 TTGTTCATACTCTTGTTTGTACTTTTG 57.218 29.630 0.00 0.00 30.96 2.44
4469 4493 8.952278 TGTTCATACTCTTGTTTGTACTTTTGT 58.048 29.630 0.00 0.00 30.96 2.83
4777 4802 2.039084 AGGTTAGTTGAGCTGTGGGAAG 59.961 50.000 0.00 0.00 0.00 3.46
4854 4879 1.556564 ATCATACGGTTGCTTCGTCG 58.443 50.000 3.18 0.00 41.38 5.12
4886 4911 3.452668 GCACGAAAAAGCGCGCTG 61.453 61.111 37.24 24.07 36.49 5.18
4916 4941 7.663081 GGTATGCATGTCTGATTATATATGGGG 59.337 40.741 10.16 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.552848 ATGGCTTCATCCGGTTCCAT 59.447 50.000 0.00 0.00 0.00 3.41
1 2 0.394216 CATGGCTTCATCCGGTTCCA 60.394 55.000 0.00 0.00 0.00 3.53
3 4 1.728490 GGCATGGCTTCATCCGGTTC 61.728 60.000 12.86 0.00 0.00 3.62
5 6 1.344953 TAGGCATGGCTTCATCCGGT 61.345 55.000 28.30 1.74 0.00 5.28
6 7 0.886490 GTAGGCATGGCTTCATCCGG 60.886 60.000 28.30 0.00 0.00 5.14
7 8 0.179048 TGTAGGCATGGCTTCATCCG 60.179 55.000 28.30 0.00 0.00 4.18
8 9 2.057137 TTGTAGGCATGGCTTCATCC 57.943 50.000 28.30 10.78 0.00 3.51
11 12 1.892474 GGTTTTGTAGGCATGGCTTCA 59.108 47.619 28.30 24.93 0.00 3.02
12 13 1.135402 CGGTTTTGTAGGCATGGCTTC 60.135 52.381 28.30 22.45 0.00 3.86
13 14 0.887933 CGGTTTTGTAGGCATGGCTT 59.112 50.000 28.30 11.56 0.00 4.35
15 16 0.451783 CTCGGTTTTGTAGGCATGGC 59.548 55.000 12.14 12.14 0.00 4.40
16 17 2.107950 TCTCGGTTTTGTAGGCATGG 57.892 50.000 0.00 0.00 0.00 3.66
18 19 2.084546 GCTTCTCGGTTTTGTAGGCAT 58.915 47.619 0.00 0.00 0.00 4.40
19 20 1.202710 TGCTTCTCGGTTTTGTAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
20 21 1.519408 TGCTTCTCGGTTTTGTAGGC 58.481 50.000 0.00 0.00 0.00 3.93
21 22 4.693566 TGTTATGCTTCTCGGTTTTGTAGG 59.306 41.667 0.00 0.00 0.00 3.18
22 23 5.856126 TGTTATGCTTCTCGGTTTTGTAG 57.144 39.130 0.00 0.00 0.00 2.74
23 24 5.935206 TGATGTTATGCTTCTCGGTTTTGTA 59.065 36.000 0.00 0.00 0.00 2.41
24 25 4.759693 TGATGTTATGCTTCTCGGTTTTGT 59.240 37.500 0.00 0.00 0.00 2.83
25 26 5.295431 TGATGTTATGCTTCTCGGTTTTG 57.705 39.130 0.00 0.00 0.00 2.44
26 27 6.150976 TGAATGATGTTATGCTTCTCGGTTTT 59.849 34.615 0.00 0.00 0.00 2.43
27 28 5.647658 TGAATGATGTTATGCTTCTCGGTTT 59.352 36.000 0.00 0.00 0.00 3.27
28 29 5.185454 TGAATGATGTTATGCTTCTCGGTT 58.815 37.500 0.00 0.00 0.00 4.44
29 30 4.769688 TGAATGATGTTATGCTTCTCGGT 58.230 39.130 0.00 0.00 0.00 4.69
30 31 5.065090 TGTTGAATGATGTTATGCTTCTCGG 59.935 40.000 0.00 0.00 0.00 4.63
31 32 5.961843 GTGTTGAATGATGTTATGCTTCTCG 59.038 40.000 0.00 0.00 0.00 4.04
32 33 6.845302 TGTGTTGAATGATGTTATGCTTCTC 58.155 36.000 0.00 0.00 0.00 2.87
33 34 6.822667 TGTGTTGAATGATGTTATGCTTCT 57.177 33.333 0.00 0.00 0.00 2.85
34 35 7.872163 TTTGTGTTGAATGATGTTATGCTTC 57.128 32.000 0.00 0.00 0.00 3.86
35 36 8.836268 AATTTGTGTTGAATGATGTTATGCTT 57.164 26.923 0.00 0.00 0.00 3.91
36 37 8.714179 CAAATTTGTGTTGAATGATGTTATGCT 58.286 29.630 10.15 0.00 0.00 3.79
37 38 7.479291 GCAAATTTGTGTTGAATGATGTTATGC 59.521 33.333 19.03 0.00 0.00 3.14
38 39 8.496751 TGCAAATTTGTGTTGAATGATGTTATG 58.503 29.630 19.03 0.00 0.00 1.90
39 40 8.604640 TGCAAATTTGTGTTGAATGATGTTAT 57.395 26.923 19.03 0.00 0.00 1.89
40 41 8.429493 TTGCAAATTTGTGTTGAATGATGTTA 57.571 26.923 19.03 0.00 0.00 2.41
41 42 6.922247 TGCAAATTTGTGTTGAATGATGTT 57.078 29.167 19.03 0.00 0.00 2.71
42 43 6.922247 TTGCAAATTTGTGTTGAATGATGT 57.078 29.167 19.03 0.00 0.00 3.06
43 44 7.535940 GGATTTGCAAATTTGTGTTGAATGATG 59.464 33.333 24.81 0.00 0.00 3.07
44 45 7.228906 TGGATTTGCAAATTTGTGTTGAATGAT 59.771 29.630 24.81 0.00 0.00 2.45
45 46 6.541278 TGGATTTGCAAATTTGTGTTGAATGA 59.459 30.769 24.81 0.00 0.00 2.57
46 47 6.726230 TGGATTTGCAAATTTGTGTTGAATG 58.274 32.000 24.81 0.00 0.00 2.67
47 48 6.939132 TGGATTTGCAAATTTGTGTTGAAT 57.061 29.167 24.81 11.60 0.00 2.57
48 49 6.677431 GCTTGGATTTGCAAATTTGTGTTGAA 60.677 34.615 24.81 8.81 0.00 2.69
49 50 5.220815 GCTTGGATTTGCAAATTTGTGTTGA 60.221 36.000 24.81 6.07 0.00 3.18
50 51 4.971220 GCTTGGATTTGCAAATTTGTGTTG 59.029 37.500 24.81 12.67 0.00 3.33
51 52 4.036616 GGCTTGGATTTGCAAATTTGTGTT 59.963 37.500 24.81 2.27 0.00 3.32
52 53 3.565063 GGCTTGGATTTGCAAATTTGTGT 59.435 39.130 24.81 3.06 0.00 3.72
53 54 3.564644 TGGCTTGGATTTGCAAATTTGTG 59.435 39.130 24.81 16.11 0.00 3.33
54 55 3.818180 TGGCTTGGATTTGCAAATTTGT 58.182 36.364 24.81 4.27 0.00 2.83
55 56 4.832590 TTGGCTTGGATTTGCAAATTTG 57.167 36.364 24.81 14.03 0.00 2.32
56 57 4.261698 GCTTTGGCTTGGATTTGCAAATTT 60.262 37.500 24.81 5.48 35.22 1.82
57 58 3.253921 GCTTTGGCTTGGATTTGCAAATT 59.746 39.130 24.81 9.69 35.22 1.82
58 59 2.815503 GCTTTGGCTTGGATTTGCAAAT 59.184 40.909 24.33 24.33 35.22 2.32
59 60 2.220313 GCTTTGGCTTGGATTTGCAAA 58.780 42.857 15.44 15.44 35.22 3.68
60 61 1.881591 GCTTTGGCTTGGATTTGCAA 58.118 45.000 0.00 0.00 35.22 4.08
61 62 3.610637 GCTTTGGCTTGGATTTGCA 57.389 47.368 0.00 0.00 35.22 4.08
69 70 3.726548 GGGAAACCCTAGCTTTGGCTTG 61.727 54.545 0.00 0.00 46.57 4.01
70 71 1.550179 GGGAAACCCTAGCTTTGGCTT 60.550 52.381 0.00 0.00 46.57 4.35
84 85 5.773176 TCAAATCTTCCTACTTTGGGGAAAC 59.227 40.000 0.00 0.00 40.53 2.78
85 86 5.959512 TCAAATCTTCCTACTTTGGGGAAA 58.040 37.500 0.00 0.00 40.53 3.13
86 87 5.570320 CTCAAATCTTCCTACTTTGGGGAA 58.430 41.667 0.00 0.00 39.04 3.97
87 88 4.567747 GCTCAAATCTTCCTACTTTGGGGA 60.568 45.833 0.00 0.00 32.25 4.81
88 89 3.696548 GCTCAAATCTTCCTACTTTGGGG 59.303 47.826 0.00 0.00 32.25 4.96
89 90 4.335416 TGCTCAAATCTTCCTACTTTGGG 58.665 43.478 0.00 0.00 34.25 4.12
90 91 5.964958 TTGCTCAAATCTTCCTACTTTGG 57.035 39.130 0.00 0.00 32.15 3.28
91 92 7.327761 CACATTTGCTCAAATCTTCCTACTTTG 59.672 37.037 4.97 0.00 38.84 2.77
92 93 7.231317 TCACATTTGCTCAAATCTTCCTACTTT 59.769 33.333 4.97 0.00 38.84 2.66
93 94 6.716628 TCACATTTGCTCAAATCTTCCTACTT 59.283 34.615 4.97 0.00 38.84 2.24
94 95 6.150140 GTCACATTTGCTCAAATCTTCCTACT 59.850 38.462 4.97 0.00 38.84 2.57
95 96 6.072508 TGTCACATTTGCTCAAATCTTCCTAC 60.073 38.462 4.97 0.88 38.84 3.18
96 97 6.003326 TGTCACATTTGCTCAAATCTTCCTA 58.997 36.000 4.97 0.00 38.84 2.94
97 98 4.828939 TGTCACATTTGCTCAAATCTTCCT 59.171 37.500 4.97 0.00 38.84 3.36
98 99 5.125100 TGTCACATTTGCTCAAATCTTCC 57.875 39.130 4.97 0.00 38.84 3.46
99 100 7.148689 GGAATTGTCACATTTGCTCAAATCTTC 60.149 37.037 4.97 1.98 38.84 2.87
100 101 6.647895 GGAATTGTCACATTTGCTCAAATCTT 59.352 34.615 4.97 0.00 38.84 2.40
101 102 6.014840 AGGAATTGTCACATTTGCTCAAATCT 60.015 34.615 4.97 0.00 38.84 2.40
102 103 6.161381 AGGAATTGTCACATTTGCTCAAATC 58.839 36.000 4.97 0.00 38.84 2.17
103 104 6.105397 AGGAATTGTCACATTTGCTCAAAT 57.895 33.333 0.92 2.24 41.33 2.32
104 105 5.534207 AGGAATTGTCACATTTGCTCAAA 57.466 34.783 0.92 0.00 34.46 2.69
105 106 6.350361 CCATAGGAATTGTCACATTTGCTCAA 60.350 38.462 9.45 0.00 30.60 3.02
106 107 5.125900 CCATAGGAATTGTCACATTTGCTCA 59.874 40.000 9.45 0.00 30.60 4.26
107 108 5.357878 TCCATAGGAATTGTCACATTTGCTC 59.642 40.000 9.45 0.00 30.60 4.26
108 109 5.263599 TCCATAGGAATTGTCACATTTGCT 58.736 37.500 10.76 10.76 32.19 3.91
109 110 5.581126 TCCATAGGAATTGTCACATTTGC 57.419 39.130 0.00 0.00 0.00 3.68
110 111 7.337480 TCATCCATAGGAATTGTCACATTTG 57.663 36.000 0.00 0.00 34.34 2.32
111 112 7.959658 TTCATCCATAGGAATTGTCACATTT 57.040 32.000 0.00 0.00 34.34 2.32
112 113 7.959658 TTTCATCCATAGGAATTGTCACATT 57.040 32.000 0.00 0.00 34.34 2.71
113 114 7.415541 CGTTTTCATCCATAGGAATTGTCACAT 60.416 37.037 0.00 0.00 34.34 3.21
114 115 6.128035 CGTTTTCATCCATAGGAATTGTCACA 60.128 38.462 0.00 0.00 34.34 3.58
115 116 6.093495 TCGTTTTCATCCATAGGAATTGTCAC 59.907 38.462 0.00 0.00 34.34 3.67
116 117 6.176896 TCGTTTTCATCCATAGGAATTGTCA 58.823 36.000 0.00 0.00 34.34 3.58
117 118 6.238484 CCTCGTTTTCATCCATAGGAATTGTC 60.238 42.308 0.00 0.00 34.34 3.18
118 119 5.590259 CCTCGTTTTCATCCATAGGAATTGT 59.410 40.000 0.00 0.00 34.34 2.71
119 120 5.009010 CCCTCGTTTTCATCCATAGGAATTG 59.991 44.000 0.00 0.00 34.34 2.32
120 121 5.133221 CCCTCGTTTTCATCCATAGGAATT 58.867 41.667 0.00 0.00 34.34 2.17
121 122 4.446311 CCCCTCGTTTTCATCCATAGGAAT 60.446 45.833 0.00 0.00 34.34 3.01
122 123 3.118038 CCCCTCGTTTTCATCCATAGGAA 60.118 47.826 0.00 0.00 34.34 3.36
123 124 2.438021 CCCCTCGTTTTCATCCATAGGA 59.562 50.000 0.00 0.00 35.55 2.94
124 125 2.438021 TCCCCTCGTTTTCATCCATAGG 59.562 50.000 0.00 0.00 0.00 2.57
125 126 3.838244 TCCCCTCGTTTTCATCCATAG 57.162 47.619 0.00 0.00 0.00 2.23
126 127 3.244078 CGATCCCCTCGTTTTCATCCATA 60.244 47.826 0.00 0.00 42.56 2.74
127 128 2.485479 CGATCCCCTCGTTTTCATCCAT 60.485 50.000 0.00 0.00 42.56 3.41
128 129 1.134521 CGATCCCCTCGTTTTCATCCA 60.135 52.381 0.00 0.00 42.56 3.41
129 130 1.583054 CGATCCCCTCGTTTTCATCC 58.417 55.000 0.00 0.00 42.56 3.51
130 131 1.138266 TCCGATCCCCTCGTTTTCATC 59.862 52.381 0.00 0.00 46.18 2.92
131 132 1.139058 CTCCGATCCCCTCGTTTTCAT 59.861 52.381 0.00 0.00 46.18 2.57
132 133 0.535335 CTCCGATCCCCTCGTTTTCA 59.465 55.000 0.00 0.00 46.18 2.69
133 134 0.179081 CCTCCGATCCCCTCGTTTTC 60.179 60.000 0.00 0.00 46.18 2.29
134 135 0.616679 TCCTCCGATCCCCTCGTTTT 60.617 55.000 0.00 0.00 46.18 2.43
135 136 1.001248 TCCTCCGATCCCCTCGTTT 59.999 57.895 0.00 0.00 46.18 3.60
136 137 1.455959 CTCCTCCGATCCCCTCGTT 60.456 63.158 0.00 0.00 46.18 3.85
137 138 1.721093 ATCTCCTCCGATCCCCTCGT 61.721 60.000 0.00 0.00 46.18 4.18
139 140 2.172679 GTAATCTCCTCCGATCCCCTC 58.827 57.143 0.00 0.00 0.00 4.30
140 141 1.203199 GGTAATCTCCTCCGATCCCCT 60.203 57.143 0.00 0.00 0.00 4.79
141 142 1.203199 AGGTAATCTCCTCCGATCCCC 60.203 57.143 0.00 0.00 31.32 4.81
142 143 2.312424 AGGTAATCTCCTCCGATCCC 57.688 55.000 0.00 0.00 31.32 3.85
143 144 4.221041 CCTTAAGGTAATCTCCTCCGATCC 59.779 50.000 13.83 0.00 36.74 3.36
144 145 4.221041 CCCTTAAGGTAATCTCCTCCGATC 59.779 50.000 20.22 0.00 36.74 3.69
145 146 4.140758 TCCCTTAAGGTAATCTCCTCCGAT 60.141 45.833 20.22 0.00 36.74 4.18
146 147 3.205959 TCCCTTAAGGTAATCTCCTCCGA 59.794 47.826 20.22 2.91 36.74 4.55
147 148 3.573695 TCCCTTAAGGTAATCTCCTCCG 58.426 50.000 20.22 0.46 36.74 4.63
148 149 3.904965 CCTCCCTTAAGGTAATCTCCTCC 59.095 52.174 20.22 0.00 36.74 4.30
149 150 3.904965 CCCTCCCTTAAGGTAATCTCCTC 59.095 52.174 20.22 0.00 36.74 3.71
150 151 3.376555 CCCCTCCCTTAAGGTAATCTCCT 60.377 52.174 20.22 0.00 39.84 3.69
151 152 2.980379 CCCCTCCCTTAAGGTAATCTCC 59.020 54.545 20.22 0.00 36.75 3.71
152 153 3.666568 ACCCCTCCCTTAAGGTAATCTC 58.333 50.000 20.22 0.00 36.75 2.75
153 154 3.786450 CAACCCCTCCCTTAAGGTAATCT 59.214 47.826 20.22 0.00 36.75 2.40
154 155 3.117625 CCAACCCCTCCCTTAAGGTAATC 60.118 52.174 20.22 0.00 36.75 1.75
155 156 2.856864 CCAACCCCTCCCTTAAGGTAAT 59.143 50.000 20.22 0.00 36.75 1.89
156 157 2.281034 CCAACCCCTCCCTTAAGGTAA 58.719 52.381 20.22 7.17 36.75 2.85
157 158 1.975471 CCAACCCCTCCCTTAAGGTA 58.025 55.000 20.22 3.36 36.75 3.08
158 159 1.506907 GCCAACCCCTCCCTTAAGGT 61.507 60.000 20.22 0.00 36.75 3.50
159 160 1.214992 AGCCAACCCCTCCCTTAAGG 61.215 60.000 15.14 15.14 36.08 2.69
160 161 0.704664 AAGCCAACCCCTCCCTTAAG 59.295 55.000 0.00 0.00 0.00 1.85
161 162 0.702316 GAAGCCAACCCCTCCCTTAA 59.298 55.000 0.00 0.00 0.00 1.85
162 163 1.559065 CGAAGCCAACCCCTCCCTTA 61.559 60.000 0.00 0.00 0.00 2.69
163 164 2.907179 CGAAGCCAACCCCTCCCTT 61.907 63.158 0.00 0.00 0.00 3.95
164 165 3.330720 CGAAGCCAACCCCTCCCT 61.331 66.667 0.00 0.00 0.00 4.20
165 166 2.420466 TTTCGAAGCCAACCCCTCCC 62.420 60.000 0.00 0.00 0.00 4.30
166 167 0.323451 ATTTCGAAGCCAACCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
167 168 1.095600 GATTTCGAAGCCAACCCCTC 58.904 55.000 0.00 0.00 0.00 4.30
168 169 0.323451 GGATTTCGAAGCCAACCCCT 60.323 55.000 12.65 0.00 36.80 4.79
169 170 0.610785 TGGATTTCGAAGCCAACCCC 60.611 55.000 16.61 4.97 45.40 4.95
170 171 2.955609 TGGATTTCGAAGCCAACCC 58.044 52.632 16.61 6.13 45.40 4.11
174 175 0.672401 GACCGTGGATTTCGAAGCCA 60.672 55.000 15.40 15.40 46.37 4.75
175 176 0.672401 TGACCGTGGATTTCGAAGCC 60.672 55.000 11.10 11.10 37.50 4.35
176 177 1.153353 TTGACCGTGGATTTCGAAGC 58.847 50.000 0.00 0.00 0.00 3.86
177 178 4.630069 AGTATTTGACCGTGGATTTCGAAG 59.370 41.667 0.00 0.00 0.00 3.79
178 179 4.571919 AGTATTTGACCGTGGATTTCGAA 58.428 39.130 0.00 0.00 0.00 3.71
179 180 4.178540 GAGTATTTGACCGTGGATTTCGA 58.821 43.478 0.00 0.00 0.00 3.71
180 181 3.308866 GGAGTATTTGACCGTGGATTTCG 59.691 47.826 0.00 0.00 0.00 3.46
181 182 3.308866 CGGAGTATTTGACCGTGGATTTC 59.691 47.826 0.00 0.00 41.47 2.17
182 183 3.267483 CGGAGTATTTGACCGTGGATTT 58.733 45.455 0.00 0.00 41.47 2.17
183 184 2.419574 CCGGAGTATTTGACCGTGGATT 60.420 50.000 0.00 0.00 44.34 3.01
184 185 1.138266 CCGGAGTATTTGACCGTGGAT 59.862 52.381 0.00 0.00 44.34 3.41
185 186 0.533491 CCGGAGTATTTGACCGTGGA 59.467 55.000 0.00 0.00 44.34 4.02
186 187 0.533491 TCCGGAGTATTTGACCGTGG 59.467 55.000 0.00 0.00 44.34 4.94
187 188 2.596904 ATCCGGAGTATTTGACCGTG 57.403 50.000 11.34 0.00 44.34 4.94
188 189 3.267483 CAAATCCGGAGTATTTGACCGT 58.733 45.455 19.80 0.00 44.90 4.83
189 190 2.031683 GCAAATCCGGAGTATTTGACCG 59.968 50.000 25.96 6.49 44.90 4.79
190 191 3.013921 TGCAAATCCGGAGTATTTGACC 58.986 45.455 25.96 13.64 44.90 4.02
191 192 4.394920 TCTTGCAAATCCGGAGTATTTGAC 59.605 41.667 25.96 18.63 44.90 3.18
192 193 4.584874 TCTTGCAAATCCGGAGTATTTGA 58.415 39.130 25.96 12.61 44.90 2.69
193 194 4.963276 TCTTGCAAATCCGGAGTATTTG 57.037 40.909 20.06 20.06 44.90 2.32
194 195 6.152661 TCAAATCTTGCAAATCCGGAGTATTT 59.847 34.615 11.34 6.27 0.00 1.40
195 196 5.652014 TCAAATCTTGCAAATCCGGAGTATT 59.348 36.000 11.34 1.75 0.00 1.89
196 197 5.192927 TCAAATCTTGCAAATCCGGAGTAT 58.807 37.500 11.34 0.00 0.00 2.12
197 198 4.584874 TCAAATCTTGCAAATCCGGAGTA 58.415 39.130 11.34 0.00 0.00 2.59
198 199 3.420893 TCAAATCTTGCAAATCCGGAGT 58.579 40.909 11.34 3.58 0.00 3.85
199 200 3.691118 TCTCAAATCTTGCAAATCCGGAG 59.309 43.478 11.34 5.73 0.00 4.63
200 201 3.684908 TCTCAAATCTTGCAAATCCGGA 58.315 40.909 6.61 6.61 0.00 5.14
201 202 4.418392 CTTCTCAAATCTTGCAAATCCGG 58.582 43.478 0.00 0.00 0.00 5.14
202 203 4.418392 CCTTCTCAAATCTTGCAAATCCG 58.582 43.478 0.00 0.00 0.00 4.18
203 204 4.221482 ACCCTTCTCAAATCTTGCAAATCC 59.779 41.667 0.00 0.00 0.00 3.01
204 205 5.397142 ACCCTTCTCAAATCTTGCAAATC 57.603 39.130 0.00 0.00 0.00 2.17
205 206 5.813513 AACCCTTCTCAAATCTTGCAAAT 57.186 34.783 0.00 0.00 0.00 2.32
206 207 5.612725 AAACCCTTCTCAAATCTTGCAAA 57.387 34.783 0.00 0.00 0.00 3.68
207 208 6.549364 TCTTAAACCCTTCTCAAATCTTGCAA 59.451 34.615 0.00 0.00 0.00 4.08
208 209 6.068010 TCTTAAACCCTTCTCAAATCTTGCA 58.932 36.000 0.00 0.00 0.00 4.08
209 210 6.349694 CCTCTTAAACCCTTCTCAAATCTTGC 60.350 42.308 0.00 0.00 0.00 4.01
210 211 6.151817 CCCTCTTAAACCCTTCTCAAATCTTG 59.848 42.308 0.00 0.00 0.00 3.02
211 212 6.249192 CCCTCTTAAACCCTTCTCAAATCTT 58.751 40.000 0.00 0.00 0.00 2.40
212 213 5.281245 CCCCTCTTAAACCCTTCTCAAATCT 60.281 44.000 0.00 0.00 0.00 2.40
213 214 4.950475 CCCCTCTTAAACCCTTCTCAAATC 59.050 45.833 0.00 0.00 0.00 2.17
214 215 4.264397 CCCCCTCTTAAACCCTTCTCAAAT 60.264 45.833 0.00 0.00 0.00 2.32
215 216 3.075432 CCCCCTCTTAAACCCTTCTCAAA 59.925 47.826 0.00 0.00 0.00 2.69
216 217 2.647802 CCCCCTCTTAAACCCTTCTCAA 59.352 50.000 0.00 0.00 0.00 3.02
217 218 2.275466 CCCCCTCTTAAACCCTTCTCA 58.725 52.381 0.00 0.00 0.00 3.27
234 235 1.074850 CTCTCTTCCCCTCTCCCCC 60.075 68.421 0.00 0.00 0.00 5.40
235 236 1.074850 CCTCTCTTCCCCTCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
236 237 0.105709 CTCCTCTCTTCCCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
237 238 0.105709 CCTCCTCTCTTCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
238 239 0.105709 CCCTCCTCTCTTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
239 240 1.598856 CCCCTCCTCTCTTCCCCTCT 61.599 65.000 0.00 0.00 0.00 3.69
240 241 1.074850 CCCCTCCTCTCTTCCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
241 242 3.124088 CCCCTCCTCTCTTCCCCT 58.876 66.667 0.00 0.00 0.00 4.79
242 243 2.770475 GCCCCTCCTCTCTTCCCC 60.770 72.222 0.00 0.00 0.00 4.81
243 244 2.041265 TGCCCCTCCTCTCTTCCC 59.959 66.667 0.00 0.00 0.00 3.97
244 245 0.985490 ATGTGCCCCTCCTCTCTTCC 60.985 60.000 0.00 0.00 0.00 3.46
245 246 0.179936 CATGTGCCCCTCCTCTCTTC 59.820 60.000 0.00 0.00 0.00 2.87
246 247 0.548682 ACATGTGCCCCTCCTCTCTT 60.549 55.000 0.00 0.00 0.00 2.85
247 248 0.980231 GACATGTGCCCCTCCTCTCT 60.980 60.000 1.15 0.00 0.00 3.10
248 249 0.980231 AGACATGTGCCCCTCCTCTC 60.980 60.000 1.15 0.00 0.00 3.20
249 250 0.339859 TAGACATGTGCCCCTCCTCT 59.660 55.000 1.15 0.00 0.00 3.69
250 251 1.139853 CTTAGACATGTGCCCCTCCTC 59.860 57.143 1.15 0.00 0.00 3.71
251 252 1.207791 CTTAGACATGTGCCCCTCCT 58.792 55.000 1.15 0.00 0.00 3.69
252 253 0.181350 CCTTAGACATGTGCCCCTCC 59.819 60.000 1.15 0.00 0.00 4.30
253 254 0.181350 CCCTTAGACATGTGCCCCTC 59.819 60.000 1.15 0.00 0.00 4.30
254 255 0.550147 ACCCTTAGACATGTGCCCCT 60.550 55.000 1.15 0.00 0.00 4.79
255 256 0.331616 AACCCTTAGACATGTGCCCC 59.668 55.000 1.15 0.00 0.00 5.80
256 257 1.463674 CAACCCTTAGACATGTGCCC 58.536 55.000 1.15 0.00 0.00 5.36
257 258 1.463674 CCAACCCTTAGACATGTGCC 58.536 55.000 1.15 0.00 0.00 5.01
258 259 1.271926 ACCCAACCCTTAGACATGTGC 60.272 52.381 1.15 0.00 0.00 4.57
259 260 2.436417 CACCCAACCCTTAGACATGTG 58.564 52.381 1.15 0.00 0.00 3.21
260 261 1.354368 CCACCCAACCCTTAGACATGT 59.646 52.381 0.00 0.00 0.00 3.21
261 262 1.340991 CCCACCCAACCCTTAGACATG 60.341 57.143 0.00 0.00 0.00 3.21
262 263 0.999712 CCCACCCAACCCTTAGACAT 59.000 55.000 0.00 0.00 0.00 3.06
263 264 1.137594 CCCCACCCAACCCTTAGACA 61.138 60.000 0.00 0.00 0.00 3.41
264 265 1.689412 CCCCACCCAACCCTTAGAC 59.311 63.158 0.00 0.00 0.00 2.59
265 266 1.542881 CCCCCACCCAACCCTTAGA 60.543 63.158 0.00 0.00 0.00 2.10
266 267 1.855451 ACCCCCACCCAACCCTTAG 60.855 63.158 0.00 0.00 0.00 2.18
267 268 2.164279 CACCCCCACCCAACCCTTA 61.164 63.158 0.00 0.00 0.00 2.69
268 269 3.517497 CACCCCCACCCAACCCTT 61.517 66.667 0.00 0.00 0.00 3.95
869 870 0.534412 CTACTCCTGGTCTGGTGCTG 59.466 60.000 0.00 0.00 0.00 4.41
870 871 0.409876 TCTACTCCTGGTCTGGTGCT 59.590 55.000 0.00 0.00 0.00 4.40
871 872 0.820871 CTCTACTCCTGGTCTGGTGC 59.179 60.000 0.00 0.00 0.00 5.01
872 873 2.025793 TCTCTCTACTCCTGGTCTGGTG 60.026 54.545 0.00 0.00 0.00 4.17
873 874 2.241176 CTCTCTCTACTCCTGGTCTGGT 59.759 54.545 0.00 0.00 0.00 4.00
874 875 2.507886 TCTCTCTCTACTCCTGGTCTGG 59.492 54.545 0.00 0.00 0.00 3.86
875 876 3.454447 TCTCTCTCTCTACTCCTGGTCTG 59.546 52.174 0.00 0.00 0.00 3.51
876 877 3.711704 CTCTCTCTCTCTACTCCTGGTCT 59.288 52.174 0.00 0.00 0.00 3.85
877 878 3.709653 TCTCTCTCTCTCTACTCCTGGTC 59.290 52.174 0.00 0.00 0.00 4.02
878 879 3.711704 CTCTCTCTCTCTCTACTCCTGGT 59.288 52.174 0.00 0.00 0.00 4.00
879 880 3.967326 TCTCTCTCTCTCTCTACTCCTGG 59.033 52.174 0.00 0.00 0.00 4.45
880 881 4.895889 TCTCTCTCTCTCTCTCTACTCCTG 59.104 50.000 0.00 0.00 0.00 3.86
881 882 5.103473 TCTCTCTCTCTCTCTCTCTACTCCT 60.103 48.000 0.00 0.00 0.00 3.69
882 883 5.141182 TCTCTCTCTCTCTCTCTCTACTCC 58.859 50.000 0.00 0.00 0.00 3.85
883 884 6.065374 TCTCTCTCTCTCTCTCTCTCTACTC 58.935 48.000 0.00 0.00 0.00 2.59
884 885 6.019656 TCTCTCTCTCTCTCTCTCTCTACT 57.980 45.833 0.00 0.00 0.00 2.57
885 886 6.065374 TCTCTCTCTCTCTCTCTCTCTCTAC 58.935 48.000 0.00 0.00 0.00 2.59
886 887 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
887 888 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
888 889 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
889 890 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
890 891 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
891 892 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
892 893 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
893 894 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
894 895 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
895 896 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
896 897 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
897 898 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
898 899 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
899 900 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
900 901 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
901 902 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
902 903 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
903 904 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
904 905 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
905 906 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
906 907 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
907 908 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
908 909 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
909 910 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
910 911 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
911 912 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
912 913 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
913 914 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
914 915 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
915 916 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
916 917 4.100808 AGCTTCTCTCTCTCTCTCTCTCTC 59.899 50.000 0.00 0.00 0.00 3.20
917 918 4.036518 AGCTTCTCTCTCTCTCTCTCTCT 58.963 47.826 0.00 0.00 0.00 3.10
918 919 4.125703 CAGCTTCTCTCTCTCTCTCTCTC 58.874 52.174 0.00 0.00 0.00 3.20
919 920 3.776969 TCAGCTTCTCTCTCTCTCTCTCT 59.223 47.826 0.00 0.00 0.00 3.10
920 921 4.125703 CTCAGCTTCTCTCTCTCTCTCTC 58.874 52.174 0.00 0.00 0.00 3.20
921 922 3.683847 GCTCAGCTTCTCTCTCTCTCTCT 60.684 52.174 0.00 0.00 0.00 3.10
935 936 2.255406 TCTCTCCTTCTTGCTCAGCTT 58.745 47.619 0.00 0.00 0.00 3.74
936 937 1.935799 TCTCTCCTTCTTGCTCAGCT 58.064 50.000 0.00 0.00 0.00 4.24
1044 1046 5.113446 AGATGACGAAGAGGTAGAAGGTA 57.887 43.478 0.00 0.00 0.00 3.08
1415 1421 6.288294 TGAAATCTCTGAAAGAAGGACGAAA 58.712 36.000 0.00 0.00 46.34 3.46
1714 1727 1.660333 CCAAAAGAAACAGCGACGCTC 60.660 52.381 21.67 9.21 36.40 5.03
1717 1730 1.597663 AGTCCAAAAGAAACAGCGACG 59.402 47.619 0.00 0.00 0.00 5.12
1720 1733 4.917415 CCATTAAGTCCAAAAGAAACAGCG 59.083 41.667 0.00 0.00 0.00 5.18
1758 1771 0.469892 AAACTGGAGCACCCCAAAGG 60.470 55.000 0.00 0.00 43.78 3.11
1774 1787 8.343366 AGATCAACCTTTTCGAAGAGTAAAAAC 58.657 33.333 14.01 2.95 38.43 2.43
2048 2061 6.128336 CCAATCAACTAAGAGCAAGAAGAGTG 60.128 42.308 0.00 0.00 0.00 3.51
2063 2076 7.194112 TGGATACATCAGAACCAATCAACTA 57.806 36.000 0.00 0.00 46.17 2.24
2064 2077 6.065976 TGGATACATCAGAACCAATCAACT 57.934 37.500 0.00 0.00 46.17 3.16
2090 2103 7.610692 ACACATCAGTAGCTAACTCACTTACTA 59.389 37.037 0.00 0.00 35.76 1.82
2189 2202 0.404040 CCACAAGGCCCTTCTTGGTA 59.596 55.000 11.25 0.00 46.04 3.25
2190 2203 1.153756 CCACAAGGCCCTTCTTGGT 59.846 57.895 11.25 0.00 46.04 3.67
2191 2204 4.102113 CCACAAGGCCCTTCTTGG 57.898 61.111 0.00 6.31 46.04 3.61
2416 2432 6.108015 ACATTTTCAGCAAGACACAACAATT 58.892 32.000 0.00 0.00 0.00 2.32
2444 2463 6.289834 TCATTCTGCCAAATCAACAACAATT 58.710 32.000 0.00 0.00 0.00 2.32
2523 2542 2.358957 CGGTTCTCCTGATGAATGCAA 58.641 47.619 0.00 0.00 0.00 4.08
2918 2938 2.065007 TCCCTATGGATGATTGGTGGG 58.935 52.381 0.00 0.00 35.03 4.61
3084 3105 4.262121 CCAAAATCTGAAATCTGCACACCA 60.262 41.667 0.00 0.00 0.00 4.17
3223 3244 2.630889 AGAGAATCACAGACTGGGGA 57.369 50.000 4.51 3.13 37.82 4.81
3306 3327 4.982241 TCTCAGTCAACTTCCCTGAATT 57.018 40.909 0.00 0.00 34.99 2.17
3307 3328 4.594920 TCTTCTCAGTCAACTTCCCTGAAT 59.405 41.667 0.00 0.00 34.99 2.57
3371 3392 0.040204 CAACTGGCCTCCTTCCCAAT 59.960 55.000 3.32 0.00 0.00 3.16
3377 3398 1.734655 TCTTCTCAACTGGCCTCCTT 58.265 50.000 3.32 0.00 0.00 3.36
3450 3471 9.559958 AATTCTAGCTAATTTCAAAATGTCACG 57.440 29.630 0.00 0.00 0.00 4.35
3492 3513 1.664151 GTGTTCTAGCGAATTTCCCCG 59.336 52.381 0.00 0.00 0.00 5.73
3845 3868 1.127343 GGGGAATCAGAGAGTGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
3919 3942 1.644786 CGGAGATTGGTTTCGTGCCC 61.645 60.000 0.00 0.00 0.00 5.36
3921 3944 0.165944 CACGGAGATTGGTTTCGTGC 59.834 55.000 0.00 0.00 43.18 5.34
3929 3952 2.099141 TTTCTCAGCACGGAGATTGG 57.901 50.000 1.30 0.00 43.10 3.16
3961 3984 1.742411 CGCCACATTCGGATTGTACCT 60.742 52.381 5.31 0.00 0.00 3.08
4008 4031 3.550437 ACATCACAGGCTATCTGAACC 57.450 47.619 0.00 0.00 46.18 3.62
4095 4118 3.963428 ATGTGTAGGTCTCACAAGGTC 57.037 47.619 2.99 0.00 46.47 3.85
4115 4138 7.506114 ACTCTATCAACTCAACCAACAAGTAA 58.494 34.615 0.00 0.00 0.00 2.24
4143 4166 1.298859 CCTCTTCTTTGCGAACCCGG 61.299 60.000 0.00 0.00 36.06 5.73
4171 4194 7.448777 ACTCTTTATACAGCGAGGAAGATCATA 59.551 37.037 0.00 0.00 0.00 2.15
4172 4195 6.266558 ACTCTTTATACAGCGAGGAAGATCAT 59.733 38.462 0.00 0.00 0.00 2.45
4372 4396 0.103390 TCAAACGCCAACTCGAGACA 59.897 50.000 21.68 0.00 0.00 3.41
4407 4431 2.320587 CCTGAGCCACGCAACTGAC 61.321 63.158 0.00 0.00 0.00 3.51
4432 4456 6.710744 ACAAGAGTATGAACAAGGGTAACAAG 59.289 38.462 0.00 0.00 39.74 3.16
4486 4510 9.956720 GCAATTCTAGCAAGTTATTTGATACAT 57.043 29.630 0.00 0.00 39.21 2.29
4487 4511 8.955388 TGCAATTCTAGCAAGTTATTTGATACA 58.045 29.630 0.00 0.00 39.39 2.29
4488 4512 9.956720 ATGCAATTCTAGCAAGTTATTTGATAC 57.043 29.630 0.00 0.00 46.27 2.24
4777 4802 4.704833 TCCTCTTGCCGCCACTGC 62.705 66.667 0.00 0.00 0.00 4.40
4854 4879 0.317938 CGTGCGGCCTATGAGTCTAC 60.318 60.000 0.00 0.00 0.00 2.59
4916 4941 5.431765 TCCAGCTTCCAAATGAGAATCTAC 58.568 41.667 0.00 0.00 34.92 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.