Multiple sequence alignment - TraesCS6D01G134700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G134700 chr6D 100.000 2432 0 0 1 2432 102400861 102398430 0.000000e+00 4492.0
1 TraesCS6D01G134700 chr2A 90.235 1065 96 4 832 1894 601618906 601617848 0.000000e+00 1384.0
2 TraesCS6D01G134700 chr2A 86.447 1092 146 2 836 1925 166083077 166081986 0.000000e+00 1195.0
3 TraesCS6D01G134700 chr2A 84.901 404 55 6 1976 2376 166081978 166081578 1.050000e-108 403.0
4 TraesCS6D01G134700 chr4A 89.344 1098 97 7 832 1928 342465333 342466411 0.000000e+00 1362.0
5 TraesCS6D01G134700 chr4A 89.253 1098 98 7 832 1928 359454156 359453078 0.000000e+00 1356.0
6 TraesCS6D01G134700 chr4A 89.032 465 48 3 1971 2432 342466412 342466876 7.540000e-160 573.0
7 TraesCS6D01G134700 chr4A 89.032 465 48 3 1971 2432 359453077 359452613 7.540000e-160 573.0
8 TraesCS6D01G134700 chr4D 88.230 1096 124 5 833 1925 11497342 11498435 0.000000e+00 1304.0
9 TraesCS6D01G134700 chr4D 86.334 461 55 8 1976 2432 11498443 11498899 1.680000e-136 496.0
10 TraesCS6D01G134700 chr3D 87.898 1099 129 4 829 1925 48297440 48298536 0.000000e+00 1290.0
11 TraesCS6D01G134700 chr3D 86.985 461 53 7 1976 2432 48298544 48299001 1.670000e-141 512.0
12 TraesCS6D01G134700 chr3B 86.188 1086 146 3 836 1920 4800971 4802053 0.000000e+00 1171.0
13 TraesCS6D01G134700 chr3B 85.912 1086 149 3 836 1920 3912972 3914054 0.000000e+00 1155.0
14 TraesCS6D01G134700 chr6B 86.963 629 61 15 1 626 188141305 188140695 0.000000e+00 688.0
15 TraesCS6D01G134700 chr6A 86.059 581 62 11 1 579 123527551 123526988 7.440000e-170 606.0
16 TraesCS6D01G134700 chr5A 82.779 331 54 3 325 654 353066406 353066734 2.370000e-75 292.0
17 TraesCS6D01G134700 chr5A 85.124 242 34 2 2192 2432 381730834 381731074 1.870000e-61 246.0
18 TraesCS6D01G134700 chr1B 86.614 254 30 4 2181 2432 26654737 26654486 6.620000e-71 278.0
19 TraesCS6D01G134700 chr5B 81.268 347 51 9 325 662 298696081 298696422 3.990000e-68 268.0
20 TraesCS6D01G134700 chr5B 81.967 122 21 1 351 472 55175717 55175837 4.280000e-18 102.0
21 TraesCS6D01G134700 chr5D 81.325 332 56 6 325 654 265551415 265551742 5.160000e-67 265.0
22 TraesCS6D01G134700 chr4B 78.914 313 47 16 330 632 620975107 620975410 6.860000e-46 195.0
23 TraesCS6D01G134700 chr3A 90.000 60 6 0 348 407 564929628 564929569 7.210000e-11 78.7
24 TraesCS6D01G134700 chr7B 81.522 92 17 0 316 407 215297641 215297550 2.590000e-10 76.8
25 TraesCS6D01G134700 chr2B 80.851 94 16 1 316 407 542862902 542862995 3.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G134700 chr6D 102398430 102400861 2431 True 4492.0 4492 100.0000 1 2432 1 chr6D.!!$R1 2431
1 TraesCS6D01G134700 chr2A 601617848 601618906 1058 True 1384.0 1384 90.2350 832 1894 1 chr2A.!!$R1 1062
2 TraesCS6D01G134700 chr2A 166081578 166083077 1499 True 799.0 1195 85.6740 836 2376 2 chr2A.!!$R2 1540
3 TraesCS6D01G134700 chr4A 342465333 342466876 1543 False 967.5 1362 89.1880 832 2432 2 chr4A.!!$F1 1600
4 TraesCS6D01G134700 chr4A 359452613 359454156 1543 True 964.5 1356 89.1425 832 2432 2 chr4A.!!$R1 1600
5 TraesCS6D01G134700 chr4D 11497342 11498899 1557 False 900.0 1304 87.2820 833 2432 2 chr4D.!!$F1 1599
6 TraesCS6D01G134700 chr3D 48297440 48299001 1561 False 901.0 1290 87.4415 829 2432 2 chr3D.!!$F1 1603
7 TraesCS6D01G134700 chr3B 4800971 4802053 1082 False 1171.0 1171 86.1880 836 1920 1 chr3B.!!$F2 1084
8 TraesCS6D01G134700 chr3B 3912972 3914054 1082 False 1155.0 1155 85.9120 836 1920 1 chr3B.!!$F1 1084
9 TraesCS6D01G134700 chr6B 188140695 188141305 610 True 688.0 688 86.9630 1 626 1 chr6B.!!$R1 625
10 TraesCS6D01G134700 chr6A 123526988 123527551 563 True 606.0 606 86.0590 1 579 1 chr6A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 746 0.107459 GATCGCCAAGGAAAGAGGCT 60.107 55.0 0.0 0.0 46.14 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 1987 0.107831 CGTCCAGTGGGGTCAAAAGA 59.892 55.0 9.92 0.0 38.11 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.710816 ATCGTCATCTTCCTCCTCCC 58.289 55.000 0.00 0.00 0.00 4.30
52 53 1.614824 CTCCTCCCACCTCTGCCTT 60.615 63.158 0.00 0.00 0.00 4.35
109 110 2.001803 CATCCCCACCACCAGATGT 58.998 57.895 0.00 0.00 33.09 3.06
122 123 6.823182 CACCACCAGATGTATCACTTATGAAA 59.177 38.462 0.00 0.00 38.69 2.69
136 138 4.336433 ACTTATGAAATTGCCGACCTGATG 59.664 41.667 0.00 0.00 0.00 3.07
145 147 2.352422 GACCTGATGCACTGGCCA 59.648 61.111 4.71 4.71 40.59 5.36
151 153 0.399833 TGATGCACTGGCCAACACTA 59.600 50.000 7.01 0.00 40.13 2.74
158 160 0.250467 CTGGCCAACACTAGCACTGT 60.250 55.000 7.01 0.00 0.00 3.55
170 172 2.108976 CACTGTCAGTGCCACCGT 59.891 61.111 19.69 0.00 39.62 4.83
171 173 1.523711 CACTGTCAGTGCCACCGTT 60.524 57.895 19.69 0.00 39.62 4.44
178 180 1.147376 AGTGCCACCGTTGTAGCAA 59.853 52.632 0.00 0.00 40.80 3.91
184 186 1.588674 CACCGTTGTAGCAACTGGAA 58.411 50.000 20.62 0.00 0.00 3.53
249 251 1.785041 CTTGGCAACTGGTGTCGTGG 61.785 60.000 0.00 0.00 33.03 4.94
255 257 0.179056 AACTGGTGTCGTGGAAGGTG 60.179 55.000 0.00 0.00 0.00 4.00
279 281 1.585521 CCGATCGACGACTTTCGGG 60.586 63.158 24.09 10.50 45.59 5.14
283 285 2.280823 ATCGACGACTTTCGGGAGGC 62.281 60.000 0.00 0.00 45.59 4.70
307 309 1.453155 GTGGTTGGATGCGATGTCTT 58.547 50.000 0.00 0.00 0.00 3.01
333 335 2.995258 GGTGCCATGTTAAAAGTGCATG 59.005 45.455 0.00 0.00 39.54 4.06
389 391 8.704668 TGACAATCTCTATGGAGTAATGCTTTA 58.295 33.333 5.93 0.00 40.29 1.85
436 438 1.347707 CCATAGATGGCGCTTTAGGGA 59.652 52.381 7.64 0.00 41.75 4.20
441 443 3.679389 AGATGGCGCTTTAGGGATATTG 58.321 45.455 7.64 0.00 0.00 1.90
449 451 5.256474 CGCTTTAGGGATATTGGATGGATT 58.744 41.667 0.00 0.00 0.00 3.01
450 452 5.355350 CGCTTTAGGGATATTGGATGGATTC 59.645 44.000 0.00 0.00 0.00 2.52
451 453 6.248433 GCTTTAGGGATATTGGATGGATTCA 58.752 40.000 0.00 0.00 0.00 2.57
452 454 6.721208 GCTTTAGGGATATTGGATGGATTCAA 59.279 38.462 0.00 0.00 0.00 2.69
453 455 7.094032 GCTTTAGGGATATTGGATGGATTCAAG 60.094 40.741 0.00 0.00 0.00 3.02
454 456 5.266709 AGGGATATTGGATGGATTCAAGG 57.733 43.478 0.00 0.00 0.00 3.61
455 457 4.921991 AGGGATATTGGATGGATTCAAGGA 59.078 41.667 0.00 0.00 0.00 3.36
456 458 5.558741 AGGGATATTGGATGGATTCAAGGAT 59.441 40.000 0.00 0.00 0.00 3.24
457 459 5.655532 GGGATATTGGATGGATTCAAGGATG 59.344 44.000 0.00 0.00 0.00 3.51
458 460 5.655532 GGATATTGGATGGATTCAAGGATGG 59.344 44.000 0.00 0.00 0.00 3.51
459 461 4.819702 ATTGGATGGATTCAAGGATGGA 57.180 40.909 0.00 0.00 0.00 3.41
460 462 4.606476 TTGGATGGATTCAAGGATGGAA 57.394 40.909 0.00 0.00 0.00 3.53
463 465 3.436180 GGATGGATTCAAGGATGGAAGCT 60.436 47.826 0.00 0.00 0.00 3.74
483 485 9.097257 GGAAGCTATAAAGATGAAGATATGCTC 57.903 37.037 0.00 0.00 0.00 4.26
497 499 8.213679 TGAAGATATGCTCTAAGCTTTGGTATT 58.786 33.333 3.20 0.00 42.97 1.89
498 500 7.976135 AGATATGCTCTAAGCTTTGGTATTG 57.024 36.000 3.20 0.00 42.97 1.90
503 505 6.179756 TGCTCTAAGCTTTGGTATTGAATGA 58.820 36.000 3.20 0.00 42.97 2.57
504 506 6.830324 TGCTCTAAGCTTTGGTATTGAATGAT 59.170 34.615 3.20 0.00 42.97 2.45
505 507 7.992608 TGCTCTAAGCTTTGGTATTGAATGATA 59.007 33.333 3.20 0.00 42.97 2.15
506 508 8.840321 GCTCTAAGCTTTGGTATTGAATGATAA 58.160 33.333 3.20 0.00 38.45 1.75
511 513 7.651808 AGCTTTGGTATTGAATGATAATTCCG 58.348 34.615 0.00 0.00 30.27 4.30
512 514 7.502226 AGCTTTGGTATTGAATGATAATTCCGA 59.498 33.333 0.00 0.00 30.27 4.55
513 515 8.299570 GCTTTGGTATTGAATGATAATTCCGAT 58.700 33.333 0.00 0.00 30.27 4.18
514 516 9.616634 CTTTGGTATTGAATGATAATTCCGATG 57.383 33.333 0.00 0.00 30.27 3.84
515 517 7.686438 TGGTATTGAATGATAATTCCGATGG 57.314 36.000 0.00 0.00 30.27 3.51
516 518 6.658816 TGGTATTGAATGATAATTCCGATGGG 59.341 38.462 0.00 0.00 30.27 4.00
517 519 6.095440 GGTATTGAATGATAATTCCGATGGGG 59.905 42.308 0.00 0.00 37.02 4.96
518 520 4.032960 TGAATGATAATTCCGATGGGGG 57.967 45.455 0.00 0.00 36.01 5.40
519 521 2.514458 ATGATAATTCCGATGGGGGC 57.486 50.000 0.00 0.00 36.01 5.80
520 522 1.144691 TGATAATTCCGATGGGGGCA 58.855 50.000 0.00 0.00 36.01 5.36
521 523 1.710244 TGATAATTCCGATGGGGGCAT 59.290 47.619 0.00 0.00 36.01 4.40
522 524 2.290896 TGATAATTCCGATGGGGGCATC 60.291 50.000 0.00 0.00 36.01 3.91
523 525 1.144691 TAATTCCGATGGGGGCATCA 58.855 50.000 0.00 0.00 36.01 3.07
524 526 0.261402 AATTCCGATGGGGGCATCAA 59.739 50.000 0.00 0.00 36.01 2.57
525 527 0.261402 ATTCCGATGGGGGCATCAAA 59.739 50.000 0.00 0.00 36.01 2.69
526 528 0.261402 TTCCGATGGGGGCATCAAAT 59.739 50.000 0.00 0.00 36.01 2.32
527 529 0.467844 TCCGATGGGGGCATCAAATG 60.468 55.000 0.00 0.00 36.01 2.32
550 552 9.696917 AATGCTTTGAGTTTTACAGAATAAAGG 57.303 29.630 0.00 0.00 0.00 3.11
551 553 8.232913 TGCTTTGAGTTTTACAGAATAAAGGT 57.767 30.769 0.00 0.00 0.00 3.50
552 554 8.691797 TGCTTTGAGTTTTACAGAATAAAGGTT 58.308 29.630 0.00 0.00 0.00 3.50
553 555 9.529325 GCTTTGAGTTTTACAGAATAAAGGTTT 57.471 29.630 0.00 0.00 0.00 3.27
564 566 7.989826 ACAGAATAAAGGTTTCATAGTGATGC 58.010 34.615 0.00 0.00 32.62 3.91
565 567 7.611467 ACAGAATAAAGGTTTCATAGTGATGCA 59.389 33.333 0.00 0.00 32.62 3.96
566 568 8.627403 CAGAATAAAGGTTTCATAGTGATGCAT 58.373 33.333 0.00 0.00 32.62 3.96
567 569 8.627403 AGAATAAAGGTTTCATAGTGATGCATG 58.373 33.333 2.46 0.00 32.62 4.06
568 570 8.523915 AATAAAGGTTTCATAGTGATGCATGA 57.476 30.769 2.46 0.00 32.62 3.07
569 571 6.839124 AAAGGTTTCATAGTGATGCATGAA 57.161 33.333 2.46 0.00 38.93 2.57
570 572 6.446781 AAGGTTTCATAGTGATGCATGAAG 57.553 37.500 2.46 0.00 41.02 3.02
571 573 4.337555 AGGTTTCATAGTGATGCATGAAGC 59.662 41.667 2.46 3.69 41.02 3.86
588 590 7.591165 GCATGAAGCATATGAGTATGATTTGT 58.409 34.615 6.97 0.00 44.79 2.83
589 591 7.537649 GCATGAAGCATATGAGTATGATTTGTG 59.462 37.037 6.97 4.77 44.79 3.33
590 592 8.780249 CATGAAGCATATGAGTATGATTTGTGA 58.220 33.333 6.97 0.00 40.12 3.58
591 593 8.735692 TGAAGCATATGAGTATGATTTGTGAA 57.264 30.769 6.97 0.00 40.12 3.18
592 594 8.833493 TGAAGCATATGAGTATGATTTGTGAAG 58.167 33.333 6.97 0.00 40.12 3.02
593 595 8.969260 AAGCATATGAGTATGATTTGTGAAGA 57.031 30.769 6.97 0.00 40.12 2.87
594 596 8.604640 AGCATATGAGTATGATTTGTGAAGAG 57.395 34.615 6.97 0.00 40.12 2.85
595 597 8.209584 AGCATATGAGTATGATTTGTGAAGAGT 58.790 33.333 6.97 0.00 40.12 3.24
596 598 8.834465 GCATATGAGTATGATTTGTGAAGAGTT 58.166 33.333 6.97 0.00 40.12 3.01
599 601 8.853077 ATGAGTATGATTTGTGAAGAGTTTCA 57.147 30.769 0.00 0.00 40.92 2.69
608 610 1.673920 TGAAGAGTTTCACCAAACGCC 59.326 47.619 0.00 0.00 45.81 5.68
609 611 1.947456 GAAGAGTTTCACCAAACGCCT 59.053 47.619 0.00 0.00 45.81 5.52
610 612 2.052782 AGAGTTTCACCAAACGCCTT 57.947 45.000 0.00 0.00 45.81 4.35
611 613 1.947456 AGAGTTTCACCAAACGCCTTC 59.053 47.619 0.00 0.00 45.81 3.46
612 614 1.001706 GAGTTTCACCAAACGCCTTCC 60.002 52.381 0.00 0.00 45.81 3.46
613 615 0.317519 GTTTCACCAAACGCCTTCCG 60.318 55.000 0.00 0.00 44.21 4.30
614 616 0.464013 TTTCACCAAACGCCTTCCGA 60.464 50.000 0.00 0.00 41.02 4.55
615 617 0.464013 TTCACCAAACGCCTTCCGAA 60.464 50.000 0.00 0.00 41.02 4.30
616 618 0.882927 TCACCAAACGCCTTCCGAAG 60.883 55.000 0.68 0.68 41.02 3.79
617 619 0.882927 CACCAAACGCCTTCCGAAGA 60.883 55.000 9.87 0.00 41.02 2.87
618 620 0.179040 ACCAAACGCCTTCCGAAGAA 60.179 50.000 9.87 0.00 41.02 2.52
620 622 1.226746 CAAACGCCTTCCGAAGAAGT 58.773 50.000 9.87 6.22 46.93 3.01
621 623 1.194772 CAAACGCCTTCCGAAGAAGTC 59.805 52.381 9.87 0.00 46.93 3.01
622 624 0.320508 AACGCCTTCCGAAGAAGTCC 60.321 55.000 9.87 0.00 46.93 3.85
623 625 1.186267 ACGCCTTCCGAAGAAGTCCT 61.186 55.000 9.87 0.00 46.93 3.85
624 626 0.458716 CGCCTTCCGAAGAAGTCCTC 60.459 60.000 9.87 0.00 46.93 3.71
625 627 0.608640 GCCTTCCGAAGAAGTCCTCA 59.391 55.000 9.87 0.00 46.93 3.86
626 628 1.208293 GCCTTCCGAAGAAGTCCTCAT 59.792 52.381 9.87 0.00 46.93 2.90
627 629 2.898705 CCTTCCGAAGAAGTCCTCATG 58.101 52.381 9.87 0.00 46.93 3.07
628 630 2.497675 CCTTCCGAAGAAGTCCTCATGA 59.502 50.000 9.87 0.00 46.93 3.07
629 631 3.133721 CCTTCCGAAGAAGTCCTCATGAT 59.866 47.826 9.87 0.00 46.93 2.45
630 632 4.342378 CCTTCCGAAGAAGTCCTCATGATA 59.658 45.833 9.87 0.00 46.93 2.15
631 633 5.011533 CCTTCCGAAGAAGTCCTCATGATAT 59.988 44.000 9.87 0.00 46.93 1.63
632 634 6.463614 CCTTCCGAAGAAGTCCTCATGATATT 60.464 42.308 9.87 0.00 46.93 1.28
633 635 7.255977 CCTTCCGAAGAAGTCCTCATGATATTA 60.256 40.741 9.87 0.00 46.93 0.98
634 636 7.782897 TCCGAAGAAGTCCTCATGATATTAT 57.217 36.000 0.00 0.00 0.00 1.28
635 637 8.195165 TCCGAAGAAGTCCTCATGATATTATT 57.805 34.615 0.00 0.00 0.00 1.40
636 638 8.307483 TCCGAAGAAGTCCTCATGATATTATTC 58.693 37.037 0.00 1.86 0.00 1.75
637 639 8.310382 CCGAAGAAGTCCTCATGATATTATTCT 58.690 37.037 0.00 0.42 0.00 2.40
638 640 9.352784 CGAAGAAGTCCTCATGATATTATTCTC 57.647 37.037 0.00 0.00 0.00 2.87
649 651 8.967918 TCATGATATTATTCTCTACTTACCCCG 58.032 37.037 0.00 0.00 0.00 5.73
650 652 8.750298 CATGATATTATTCTCTACTTACCCCGT 58.250 37.037 0.00 0.00 0.00 5.28
651 653 8.118976 TGATATTATTCTCTACTTACCCCGTG 57.881 38.462 0.00 0.00 0.00 4.94
652 654 4.660789 TTATTCTCTACTTACCCCGTGC 57.339 45.455 0.00 0.00 0.00 5.34
653 655 1.188863 TTCTCTACTTACCCCGTGCC 58.811 55.000 0.00 0.00 0.00 5.01
654 656 0.333993 TCTCTACTTACCCCGTGCCT 59.666 55.000 0.00 0.00 0.00 4.75
655 657 1.565759 TCTCTACTTACCCCGTGCCTA 59.434 52.381 0.00 0.00 0.00 3.93
656 658 2.176364 TCTCTACTTACCCCGTGCCTAT 59.824 50.000 0.00 0.00 0.00 2.57
657 659 3.395607 TCTCTACTTACCCCGTGCCTATA 59.604 47.826 0.00 0.00 0.00 1.31
658 660 3.757493 CTCTACTTACCCCGTGCCTATAG 59.243 52.174 0.00 0.00 0.00 1.31
659 661 1.713297 ACTTACCCCGTGCCTATAGG 58.287 55.000 15.01 15.01 38.53 2.57
660 662 0.974383 CTTACCCCGTGCCTATAGGG 59.026 60.000 20.58 5.93 45.75 3.53
670 672 2.686119 TGCCTATAGGGACCTTGGTAC 58.314 52.381 20.58 0.08 37.23 3.34
671 673 1.976404 GCCTATAGGGACCTTGGTACC 59.024 57.143 20.58 13.12 37.23 3.34
672 674 2.427445 GCCTATAGGGACCTTGGTACCT 60.427 54.545 25.36 25.36 37.23 3.08
673 675 3.181414 GCCTATAGGGACCTTGGTACCTA 60.181 52.174 27.67 27.67 39.69 3.08
674 676 4.512391 GCCTATAGGGACCTTGGTACCTAT 60.512 50.000 33.87 33.87 45.59 2.57
675 677 5.281927 GCCTATAGGGACCTTGGTACCTATA 60.282 48.000 32.89 32.89 42.81 1.31
676 678 6.755018 GCCTATAGGGACCTTGGTACCTATAA 60.755 46.154 33.71 23.65 43.95 0.98
677 679 7.428335 CCTATAGGGACCTTGGTACCTATAAT 58.572 42.308 33.71 22.86 43.95 1.28
678 680 7.564292 CCTATAGGGACCTTGGTACCTATAATC 59.436 44.444 33.71 7.81 43.95 1.75
679 681 5.435545 AGGGACCTTGGTACCTATAATCT 57.564 43.478 21.47 0.00 0.00 2.40
680 682 5.155905 AGGGACCTTGGTACCTATAATCTG 58.844 45.833 21.47 0.00 0.00 2.90
681 683 5.102783 AGGGACCTTGGTACCTATAATCTGA 60.103 44.000 21.47 0.00 0.00 3.27
682 684 5.246429 GGGACCTTGGTACCTATAATCTGAG 59.754 48.000 14.36 0.00 0.00 3.35
683 685 5.839606 GGACCTTGGTACCTATAATCTGAGT 59.160 44.000 14.36 0.00 0.00 3.41
684 686 6.326843 GGACCTTGGTACCTATAATCTGAGTT 59.673 42.308 14.36 0.00 0.00 3.01
685 687 7.147532 GGACCTTGGTACCTATAATCTGAGTTT 60.148 40.741 14.36 0.00 0.00 2.66
686 688 8.159229 ACCTTGGTACCTATAATCTGAGTTTT 57.841 34.615 14.36 0.00 0.00 2.43
687 689 8.612145 ACCTTGGTACCTATAATCTGAGTTTTT 58.388 33.333 14.36 0.00 0.00 1.94
688 690 8.893727 CCTTGGTACCTATAATCTGAGTTTTTG 58.106 37.037 14.36 0.00 0.00 2.44
689 691 8.801882 TTGGTACCTATAATCTGAGTTTTTGG 57.198 34.615 14.36 0.00 0.00 3.28
690 692 8.153221 TGGTACCTATAATCTGAGTTTTTGGA 57.847 34.615 14.36 0.00 0.00 3.53
691 693 8.778059 TGGTACCTATAATCTGAGTTTTTGGAT 58.222 33.333 14.36 0.00 0.00 3.41
692 694 9.628500 GGTACCTATAATCTGAGTTTTTGGATT 57.372 33.333 4.06 0.00 33.69 3.01
695 697 9.533831 ACCTATAATCTGAGTTTTTGGATTTGT 57.466 29.630 0.00 0.00 31.89 2.83
723 725 6.636454 AAAATGGAGGTAGTATCTGGTTGA 57.364 37.500 0.00 0.00 0.00 3.18
724 726 5.615925 AATGGAGGTAGTATCTGGTTGAC 57.384 43.478 0.00 0.00 0.00 3.18
725 727 3.021695 TGGAGGTAGTATCTGGTTGACG 58.978 50.000 0.00 0.00 0.00 4.35
726 728 3.285484 GGAGGTAGTATCTGGTTGACGA 58.715 50.000 0.00 0.00 0.00 4.20
727 729 3.890147 GGAGGTAGTATCTGGTTGACGAT 59.110 47.826 0.00 0.00 0.00 3.73
728 730 4.023021 GGAGGTAGTATCTGGTTGACGATC 60.023 50.000 0.00 0.00 0.00 3.69
729 731 3.564644 AGGTAGTATCTGGTTGACGATCG 59.435 47.826 14.88 14.88 0.00 3.69
730 732 2.493713 AGTATCTGGTTGACGATCGC 57.506 50.000 16.60 8.83 0.00 4.58
731 733 1.067212 AGTATCTGGTTGACGATCGCC 59.933 52.381 16.60 4.24 0.00 5.54
732 734 1.107945 TATCTGGTTGACGATCGCCA 58.892 50.000 16.60 7.75 0.00 5.69
733 735 0.249120 ATCTGGTTGACGATCGCCAA 59.751 50.000 16.60 14.75 0.00 4.52
734 736 0.389817 TCTGGTTGACGATCGCCAAG 60.390 55.000 17.48 6.18 0.00 3.61
735 737 1.361668 CTGGTTGACGATCGCCAAGG 61.362 60.000 17.48 7.14 0.00 3.61
736 738 1.079405 GGTTGACGATCGCCAAGGA 60.079 57.895 17.48 0.00 0.00 3.36
737 739 0.672401 GGTTGACGATCGCCAAGGAA 60.672 55.000 17.48 0.00 0.00 3.36
738 740 1.153353 GTTGACGATCGCCAAGGAAA 58.847 50.000 17.48 0.00 0.00 3.13
739 741 1.128692 GTTGACGATCGCCAAGGAAAG 59.871 52.381 17.48 0.00 0.00 2.62
740 742 0.606096 TGACGATCGCCAAGGAAAGA 59.394 50.000 16.60 0.00 0.00 2.52
741 743 1.281899 GACGATCGCCAAGGAAAGAG 58.718 55.000 16.60 0.00 0.00 2.85
742 744 0.108138 ACGATCGCCAAGGAAAGAGG 60.108 55.000 16.60 0.00 0.00 3.69
743 745 1.432270 CGATCGCCAAGGAAAGAGGC 61.432 60.000 0.26 0.00 44.89 4.70
744 746 0.107459 GATCGCCAAGGAAAGAGGCT 60.107 55.000 0.00 0.00 46.14 4.58
745 747 0.107459 ATCGCCAAGGAAAGAGGCTC 60.107 55.000 6.34 6.34 46.14 4.70
746 748 2.103042 CGCCAAGGAAAGAGGCTCG 61.103 63.158 9.22 0.00 46.14 5.03
747 749 1.296715 GCCAAGGAAAGAGGCTCGA 59.703 57.895 9.22 0.00 44.92 4.04
748 750 0.107459 GCCAAGGAAAGAGGCTCGAT 60.107 55.000 9.22 1.33 44.92 3.59
749 751 1.680249 GCCAAGGAAAGAGGCTCGATT 60.680 52.381 9.22 8.58 44.92 3.34
750 752 2.284190 CCAAGGAAAGAGGCTCGATTC 58.716 52.381 20.85 20.85 0.00 2.52
751 753 2.093235 CCAAGGAAAGAGGCTCGATTCT 60.093 50.000 25.04 14.23 0.00 2.40
752 754 3.604582 CAAGGAAAGAGGCTCGATTCTT 58.395 45.455 25.04 19.26 35.25 2.52
753 755 3.990959 AGGAAAGAGGCTCGATTCTTT 57.009 42.857 25.04 15.40 44.10 2.52
759 761 6.917217 AAAGAGGCTCGATTCTTTCAATAG 57.083 37.500 9.22 0.00 38.86 1.73
760 762 4.954875 AGAGGCTCGATTCTTTCAATAGG 58.045 43.478 9.22 0.00 0.00 2.57
761 763 4.061596 GAGGCTCGATTCTTTCAATAGGG 58.938 47.826 0.00 0.00 0.00 3.53
762 764 3.142174 GGCTCGATTCTTTCAATAGGGG 58.858 50.000 0.00 0.00 0.00 4.79
763 765 3.181454 GGCTCGATTCTTTCAATAGGGGA 60.181 47.826 0.00 0.00 0.00 4.81
764 766 4.505742 GGCTCGATTCTTTCAATAGGGGAT 60.506 45.833 0.00 0.00 0.00 3.85
765 767 4.693095 GCTCGATTCTTTCAATAGGGGATC 59.307 45.833 0.00 0.00 0.00 3.36
766 768 4.883083 TCGATTCTTTCAATAGGGGATCG 58.117 43.478 0.00 0.00 0.00 3.69
767 769 4.587262 TCGATTCTTTCAATAGGGGATCGA 59.413 41.667 0.00 0.00 34.98 3.59
768 770 5.246203 TCGATTCTTTCAATAGGGGATCGAT 59.754 40.000 0.00 0.00 32.88 3.59
769 771 5.578727 CGATTCTTTCAATAGGGGATCGATC 59.421 44.000 17.36 17.36 0.00 3.69
770 772 5.887214 TTCTTTCAATAGGGGATCGATCA 57.113 39.130 25.93 6.68 0.00 2.92
771 773 5.887214 TCTTTCAATAGGGGATCGATCAA 57.113 39.130 25.93 9.28 0.00 2.57
772 774 5.611374 TCTTTCAATAGGGGATCGATCAAC 58.389 41.667 25.93 17.49 0.00 3.18
773 775 5.366768 TCTTTCAATAGGGGATCGATCAACT 59.633 40.000 25.93 22.75 0.00 3.16
774 776 5.630415 TTCAATAGGGGATCGATCAACTT 57.370 39.130 25.93 16.45 0.00 2.66
775 777 5.630415 TCAATAGGGGATCGATCAACTTT 57.370 39.130 25.93 14.80 0.00 2.66
776 778 6.740944 TCAATAGGGGATCGATCAACTTTA 57.259 37.500 25.93 14.25 0.00 1.85
777 779 7.316393 TCAATAGGGGATCGATCAACTTTAT 57.684 36.000 25.93 15.52 0.00 1.40
778 780 7.745717 TCAATAGGGGATCGATCAACTTTATT 58.254 34.615 25.93 19.11 0.00 1.40
779 781 8.217799 TCAATAGGGGATCGATCAACTTTATTT 58.782 33.333 25.93 11.73 0.00 1.40
780 782 8.850156 CAATAGGGGATCGATCAACTTTATTTT 58.150 33.333 25.93 9.81 0.00 1.82
782 784 9.726438 ATAGGGGATCGATCAACTTTATTTTAG 57.274 33.333 25.93 0.00 0.00 1.85
783 785 6.998673 AGGGGATCGATCAACTTTATTTTAGG 59.001 38.462 25.93 0.00 0.00 2.69
784 786 6.294010 GGGGATCGATCAACTTTATTTTAGGC 60.294 42.308 25.93 3.47 0.00 3.93
785 787 6.486993 GGGATCGATCAACTTTATTTTAGGCT 59.513 38.462 25.93 0.00 0.00 4.58
786 788 7.355778 GGATCGATCAACTTTATTTTAGGCTG 58.644 38.462 25.93 0.00 0.00 4.85
787 789 7.226720 GGATCGATCAACTTTATTTTAGGCTGA 59.773 37.037 25.93 0.00 0.00 4.26
788 790 7.539712 TCGATCAACTTTATTTTAGGCTGAG 57.460 36.000 0.00 0.00 0.00 3.35
789 791 6.538742 TCGATCAACTTTATTTTAGGCTGAGG 59.461 38.462 0.00 0.00 0.00 3.86
790 792 6.238484 CGATCAACTTTATTTTAGGCTGAGGG 60.238 42.308 0.00 0.00 0.00 4.30
791 793 5.261216 TCAACTTTATTTTAGGCTGAGGGG 58.739 41.667 0.00 0.00 0.00 4.79
792 794 5.014755 TCAACTTTATTTTAGGCTGAGGGGA 59.985 40.000 0.00 0.00 0.00 4.81
793 795 5.734031 ACTTTATTTTAGGCTGAGGGGAT 57.266 39.130 0.00 0.00 0.00 3.85
794 796 5.449553 ACTTTATTTTAGGCTGAGGGGATG 58.550 41.667 0.00 0.00 0.00 3.51
795 797 4.453480 TTATTTTAGGCTGAGGGGATGG 57.547 45.455 0.00 0.00 0.00 3.51
796 798 1.979809 TTTTAGGCTGAGGGGATGGA 58.020 50.000 0.00 0.00 0.00 3.41
797 799 2.212752 TTTAGGCTGAGGGGATGGAT 57.787 50.000 0.00 0.00 0.00 3.41
798 800 1.734655 TTAGGCTGAGGGGATGGATC 58.265 55.000 0.00 0.00 0.00 3.36
799 801 0.567687 TAGGCTGAGGGGATGGATCA 59.432 55.000 0.00 0.00 0.00 2.92
800 802 0.327867 AGGCTGAGGGGATGGATCAA 60.328 55.000 0.00 0.00 0.00 2.57
801 803 0.179006 GGCTGAGGGGATGGATCAAC 60.179 60.000 0.00 0.00 0.00 3.18
802 804 0.842635 GCTGAGGGGATGGATCAACT 59.157 55.000 0.00 0.00 0.00 3.16
803 805 2.050144 GCTGAGGGGATGGATCAACTA 58.950 52.381 0.00 0.00 0.00 2.24
804 806 2.038295 GCTGAGGGGATGGATCAACTAG 59.962 54.545 0.00 0.00 0.00 2.57
805 807 3.312890 CTGAGGGGATGGATCAACTAGT 58.687 50.000 0.00 0.00 0.00 2.57
806 808 3.041211 TGAGGGGATGGATCAACTAGTG 58.959 50.000 0.00 0.00 0.00 2.74
807 809 3.309296 GAGGGGATGGATCAACTAGTGA 58.691 50.000 0.00 0.00 41.67 3.41
808 810 3.711704 GAGGGGATGGATCAACTAGTGAA 59.288 47.826 0.00 0.00 40.50 3.18
809 811 3.456277 AGGGGATGGATCAACTAGTGAAC 59.544 47.826 0.00 0.00 40.50 3.18
810 812 3.458189 GGGATGGATCAACTAGTGAACG 58.542 50.000 0.00 0.00 40.50 3.95
811 813 3.118738 GGGATGGATCAACTAGTGAACGT 60.119 47.826 0.00 0.00 40.50 3.99
812 814 4.504858 GGATGGATCAACTAGTGAACGTT 58.495 43.478 0.00 0.00 40.50 3.99
813 815 4.935808 GGATGGATCAACTAGTGAACGTTT 59.064 41.667 0.46 0.00 40.50 3.60
814 816 5.411669 GGATGGATCAACTAGTGAACGTTTT 59.588 40.000 0.46 0.00 40.50 2.43
815 817 6.592607 GGATGGATCAACTAGTGAACGTTTTA 59.407 38.462 0.46 0.00 40.50 1.52
816 818 7.280205 GGATGGATCAACTAGTGAACGTTTTAT 59.720 37.037 0.46 0.00 40.50 1.40
817 819 7.359262 TGGATCAACTAGTGAACGTTTTATG 57.641 36.000 0.46 0.00 40.50 1.90
818 820 6.128391 TGGATCAACTAGTGAACGTTTTATGC 60.128 38.462 0.46 0.00 40.50 3.14
819 821 6.128391 GGATCAACTAGTGAACGTTTTATGCA 60.128 38.462 0.46 0.00 40.50 3.96
820 822 6.606234 TCAACTAGTGAACGTTTTATGCAA 57.394 33.333 0.46 0.00 31.51 4.08
821 823 7.017498 TCAACTAGTGAACGTTTTATGCAAA 57.983 32.000 0.46 0.00 31.51 3.68
822 824 7.473366 TCAACTAGTGAACGTTTTATGCAAAA 58.527 30.769 0.46 0.00 31.51 2.44
823 825 7.968956 TCAACTAGTGAACGTTTTATGCAAAAA 59.031 29.630 0.46 0.00 32.41 1.94
824 826 7.908193 ACTAGTGAACGTTTTATGCAAAAAG 57.092 32.000 0.46 0.00 38.57 2.27
825 827 7.477494 ACTAGTGAACGTTTTATGCAAAAAGT 58.523 30.769 0.46 0.00 44.72 2.66
826 828 6.567769 AGTGAACGTTTTATGCAAAAAGTG 57.432 33.333 0.46 4.76 42.89 3.16
827 829 6.096695 AGTGAACGTTTTATGCAAAAAGTGT 58.903 32.000 0.46 5.24 42.89 3.55
828 830 6.588373 AGTGAACGTTTTATGCAAAAAGTGTT 59.412 30.769 0.46 15.92 42.89 3.32
829 831 7.117092 AGTGAACGTTTTATGCAAAAAGTGTTT 59.883 29.630 0.46 1.79 42.89 2.83
830 832 7.421331 GTGAACGTTTTATGCAAAAAGTGTTTC 59.579 33.333 0.46 8.37 42.89 2.78
848 850 1.892209 TCTTTTTCCCCAAGCGACTC 58.108 50.000 0.00 0.00 0.00 3.36
852 854 0.762418 TTTCCCCAAGCGACTCAAGA 59.238 50.000 0.00 0.00 0.00 3.02
859 861 2.482142 CCAAGCGACTCAAGATAGGGTC 60.482 54.545 0.00 0.00 0.00 4.46
915 919 1.756561 TGATCGATCGTCCCCTGCA 60.757 57.895 20.03 0.00 0.00 4.41
947 952 3.390521 CGTCCACTGCCCTGGCTA 61.391 66.667 9.97 0.00 42.51 3.93
950 955 4.115199 CCACTGCCCTGGCTACCC 62.115 72.222 9.97 0.00 42.51 3.69
964 969 1.835494 CTACCCGGTCTGTCTTCTCA 58.165 55.000 0.00 0.00 0.00 3.27
994 999 1.305930 GGCTAGGGTTTCGCCAACTG 61.306 60.000 0.00 0.00 43.25 3.16
1031 1036 0.395724 TCAGAGGCTAGTGGATCGCA 60.396 55.000 0.00 0.00 0.00 5.10
1053 1058 1.916181 TCCAAAGTCCCTGAAGATCCC 59.084 52.381 0.00 0.00 0.00 3.85
1130 1135 1.336980 GGAAGAAGAAGCGGACGAACT 60.337 52.381 0.00 0.00 0.00 3.01
1181 1186 5.310451 AGCTAGGGTTTTGACGAACAAATA 58.690 37.500 11.58 3.50 45.99 1.40
1222 1230 3.093278 CCGACATGAAAGCGGCTC 58.907 61.111 1.45 0.00 38.46 4.70
1223 1232 1.741401 CCGACATGAAAGCGGCTCA 60.741 57.895 1.45 0.00 38.46 4.26
1281 1298 3.328637 ACCCTAACCTGTTTTCGGTACAT 59.671 43.478 0.00 0.00 33.53 2.29
1300 1317 7.465513 CGGTACATTTTAATTGTCTAGCAGACC 60.466 40.741 11.99 0.00 44.44 3.85
1325 1342 3.474570 GGCGCTCCATCAGGGTCT 61.475 66.667 7.64 0.00 36.72 3.85
1363 1380 1.453762 GGCCCTGATCATTGCTGAGC 61.454 60.000 14.17 0.00 38.30 4.26
1442 1459 3.573538 CAGATCCACTGACTCCTGGATAG 59.426 52.174 0.00 0.00 45.66 2.08
1502 1519 0.108804 CGCATAGGTGAAGTGGTCGT 60.109 55.000 0.00 0.00 0.00 4.34
1530 1547 3.197766 AGATTGTTCTGCCGAGTGGATTA 59.802 43.478 0.00 0.00 37.49 1.75
1560 1577 6.750963 GTGAGTTCATACGGGTTAGAGTTAAG 59.249 42.308 0.00 0.00 0.00 1.85
1634 1651 7.495934 CGGAGAAACTGAATATTACCAAGTCAT 59.504 37.037 0.00 0.00 0.00 3.06
1748 1766 8.239478 AGATATGGAGTAGGGTCCTTTTATACA 58.761 37.037 0.00 0.00 37.52 2.29
1813 1831 0.820891 CTATGGCCGCAGCTTGGAAT 60.821 55.000 5.93 1.63 39.73 3.01
1838 1856 1.181098 GCAGGTGCCTTTGGTGATGT 61.181 55.000 0.00 0.00 34.31 3.06
1899 1917 1.040893 TATCACATGGCCGAGGTCGT 61.041 55.000 0.00 0.00 37.74 4.34
1923 1941 2.851263 ATGAGCACCGGAACTTTGTA 57.149 45.000 9.46 0.00 0.00 2.41
1928 1946 1.677052 GCACCGGAACTTTGTACCAAA 59.323 47.619 9.46 0.00 0.00 3.28
1930 1948 3.502979 GCACCGGAACTTTGTACCAAATA 59.497 43.478 9.46 0.00 0.00 1.40
1931 1949 4.379082 GCACCGGAACTTTGTACCAAATAG 60.379 45.833 9.46 0.00 0.00 1.73
1932 1950 4.758165 CACCGGAACTTTGTACCAAATAGT 59.242 41.667 9.46 0.00 0.00 2.12
1933 1951 5.933463 CACCGGAACTTTGTACCAAATAGTA 59.067 40.000 9.46 0.00 0.00 1.82
1934 1952 6.596497 CACCGGAACTTTGTACCAAATAGTAT 59.404 38.462 9.46 0.00 0.00 2.12
1935 1953 6.596497 ACCGGAACTTTGTACCAAATAGTATG 59.404 38.462 9.46 0.00 0.00 2.39
1936 1954 6.457799 CCGGAACTTTGTACCAAATAGTATGC 60.458 42.308 0.00 0.00 0.00 3.14
1937 1955 6.092944 CGGAACTTTGTACCAAATAGTATGCA 59.907 38.462 0.00 0.00 0.00 3.96
1938 1956 7.361371 CGGAACTTTGTACCAAATAGTATGCAA 60.361 37.037 0.00 0.00 0.00 4.08
1939 1957 8.301002 GGAACTTTGTACCAAATAGTATGCAAA 58.699 33.333 0.00 0.00 0.00 3.68
1940 1958 9.685828 GAACTTTGTACCAAATAGTATGCAAAA 57.314 29.630 0.00 0.00 0.00 2.44
1955 1973 8.553459 AGTATGCAAAATACTAGGATACATGC 57.447 34.615 10.95 10.95 38.53 4.06
1956 1974 6.824305 ATGCAAAATACTAGGATACATGCC 57.176 37.500 13.89 0.00 41.41 4.40
1957 1975 5.070001 TGCAAAATACTAGGATACATGCCC 58.930 41.667 13.89 0.00 41.41 5.36
1958 1976 5.070001 GCAAAATACTAGGATACATGCCCA 58.930 41.667 7.86 0.00 41.41 5.36
1959 1977 5.182001 GCAAAATACTAGGATACATGCCCAG 59.818 44.000 7.86 0.00 41.41 4.45
1960 1978 5.505181 AAATACTAGGATACATGCCCAGG 57.495 43.478 0.00 0.00 41.41 4.45
1961 1979 1.734655 ACTAGGATACATGCCCAGGG 58.265 55.000 0.00 0.00 41.41 4.45
1962 1980 0.987294 CTAGGATACATGCCCAGGGG 59.013 60.000 7.91 3.48 41.41 4.79
1973 1991 3.697799 CCCAGGGGCTTGAATCTTT 57.302 52.632 0.00 0.00 0.00 2.52
1974 1992 1.942776 CCCAGGGGCTTGAATCTTTT 58.057 50.000 0.00 0.00 0.00 2.27
2015 2033 1.330234 TTCATGCAAAAGAGCTGGCA 58.670 45.000 0.00 0.00 41.00 4.92
2057 2077 0.907704 ATGACCCCGGTGTTCAGCTA 60.908 55.000 0.00 0.00 0.00 3.32
2063 2083 1.005037 CGGTGTTCAGCTAGCCACA 60.005 57.895 19.29 13.95 0.00 4.17
2087 2107 1.676006 GTTGGTGAGACACAACTTGGG 59.324 52.381 0.00 0.00 37.08 4.12
2100 2120 2.426024 CAACTTGGGCAGAAGGATGATG 59.574 50.000 1.19 0.00 0.00 3.07
2122 2142 1.699083 CCTCATTTTGGGCAAAAGGGT 59.301 47.619 0.00 0.00 42.72 4.34
2123 2143 2.106338 CCTCATTTTGGGCAAAAGGGTT 59.894 45.455 0.00 0.00 42.72 4.11
2141 2161 1.733912 GTTGCAGATGATTCGAGCACA 59.266 47.619 0.00 0.00 37.46 4.57
2147 2167 3.808174 CAGATGATTCGAGCACATCACAT 59.192 43.478 21.40 5.16 41.64 3.21
2152 2172 2.293677 TCGAGCACATCACATACCAC 57.706 50.000 0.00 0.00 0.00 4.16
2158 2178 3.515502 AGCACATCACATACCACTACTGT 59.484 43.478 0.00 0.00 0.00 3.55
2167 2187 6.266786 TCACATACCACTACTGTTGAAGAAGA 59.733 38.462 0.00 0.00 0.00 2.87
2169 2189 6.493802 ACATACCACTACTGTTGAAGAAGAGA 59.506 38.462 0.00 0.00 0.00 3.10
2179 2199 6.495181 ACTGTTGAAGAAGAGATAGACAGGAA 59.505 38.462 0.00 0.00 38.00 3.36
2216 2236 1.134098 CCGTTGGGGAATACAGCAGAT 60.134 52.381 0.00 0.00 38.47 2.90
2226 2246 1.789523 TACAGCAGATAGGGTGGGTC 58.210 55.000 0.00 0.00 40.47 4.46
2238 2258 0.036875 GGTGGGTCAGTTTGAGGGAG 59.963 60.000 0.00 0.00 0.00 4.30
2240 2260 1.002011 GGGTCAGTTTGAGGGAGCC 60.002 63.158 0.00 0.00 41.40 4.70
2243 2263 0.034896 GTCAGTTTGAGGGAGCCGAA 59.965 55.000 0.00 0.00 0.00 4.30
2249 2269 4.097361 GAGGGAGCCGAACCACCC 62.097 72.222 0.00 0.00 42.36 4.61
2258 2278 2.360475 GAACCACCCAGCAGCTCC 60.360 66.667 0.00 0.00 0.00 4.70
2297 2317 4.990426 CAGAAGAATGCAAACCGGAAAAAT 59.010 37.500 9.46 0.00 0.00 1.82
2347 2368 8.567948 CATTGACAGTACCTCAACTAAAACATT 58.432 33.333 5.86 0.00 30.46 2.71
2401 2422 7.775561 GTCCCAATGAATCTACTAAGTTGGAAT 59.224 37.037 0.00 0.00 37.42 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.592861 GGAGATGCGGTGGATGGC 60.593 66.667 0.00 0.00 0.00 4.40
109 110 5.527214 CAGGTCGGCAATTTCATAAGTGATA 59.473 40.000 0.00 0.00 33.56 2.15
122 123 1.028330 CAGTGCATCAGGTCGGCAAT 61.028 55.000 0.00 0.00 39.57 3.56
136 138 1.600636 TGCTAGTGTTGGCCAGTGC 60.601 57.895 5.11 6.16 0.00 4.40
170 172 3.419943 TCATGCATTCCAGTTGCTACAA 58.580 40.909 0.00 0.00 40.77 2.41
171 173 3.011818 CTCATGCATTCCAGTTGCTACA 58.988 45.455 0.00 0.00 40.77 2.74
178 180 1.035932 GCCAGCTCATGCATTCCAGT 61.036 55.000 0.00 0.00 42.74 4.00
184 186 0.613853 AACAAGGCCAGCTCATGCAT 60.614 50.000 5.01 0.00 42.74 3.96
236 238 0.179056 CACCTTCCACGACACCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
271 273 2.207924 ACGACTGCCTCCCGAAAGT 61.208 57.895 0.00 0.00 0.00 2.66
279 281 1.021390 CATCCAACCACGACTGCCTC 61.021 60.000 0.00 0.00 0.00 4.70
283 285 0.740868 ATCGCATCCAACCACGACTG 60.741 55.000 0.00 0.00 37.37 3.51
323 325 3.691609 GCTTAGGAGCTACATGCACTTTT 59.308 43.478 0.00 0.00 45.65 2.27
333 335 2.381725 AAACCACGCTTAGGAGCTAC 57.618 50.000 0.00 0.00 46.96 3.58
345 347 5.114785 TGTCATCAATTACCAAAACCACG 57.885 39.130 0.00 0.00 0.00 4.94
429 431 7.074880 TCCTTGAATCCATCCAATATCCCTAAA 59.925 37.037 0.00 0.00 0.00 1.85
433 435 5.261040 TCCTTGAATCCATCCAATATCCC 57.739 43.478 0.00 0.00 0.00 3.85
436 438 6.473429 TCCATCCTTGAATCCATCCAATAT 57.527 37.500 0.00 0.00 0.00 1.28
441 443 2.889678 GCTTCCATCCTTGAATCCATCC 59.110 50.000 0.00 0.00 0.00 3.51
449 451 7.379059 TCATCTTTATAGCTTCCATCCTTGA 57.621 36.000 0.00 0.00 0.00 3.02
450 452 7.935755 TCTTCATCTTTATAGCTTCCATCCTTG 59.064 37.037 0.00 0.00 0.00 3.61
451 453 8.038862 TCTTCATCTTTATAGCTTCCATCCTT 57.961 34.615 0.00 0.00 0.00 3.36
452 454 7.623999 TCTTCATCTTTATAGCTTCCATCCT 57.376 36.000 0.00 0.00 0.00 3.24
455 457 9.393512 GCATATCTTCATCTTTATAGCTTCCAT 57.606 33.333 0.00 0.00 0.00 3.41
456 458 8.600668 AGCATATCTTCATCTTTATAGCTTCCA 58.399 33.333 0.00 0.00 0.00 3.53
457 459 9.097257 GAGCATATCTTCATCTTTATAGCTTCC 57.903 37.037 0.00 0.00 0.00 3.46
458 460 9.874205 AGAGCATATCTTCATCTTTATAGCTTC 57.126 33.333 0.00 0.00 32.99 3.86
497 499 3.813957 GCCCCCATCGGAATTATCATTCA 60.814 47.826 2.21 0.00 40.77 2.57
498 500 2.755103 GCCCCCATCGGAATTATCATTC 59.245 50.000 0.00 0.00 38.54 2.67
503 505 2.514458 GATGCCCCCATCGGAATTAT 57.486 50.000 0.00 0.00 38.59 1.28
505 507 4.929807 GATGCCCCCATCGGAATT 57.070 55.556 0.00 0.00 38.59 2.17
524 526 9.696917 CCTTTATTCTGTAAAACTCAAAGCATT 57.303 29.630 0.00 0.00 0.00 3.56
525 527 8.860088 ACCTTTATTCTGTAAAACTCAAAGCAT 58.140 29.630 0.00 0.00 0.00 3.79
526 528 8.232913 ACCTTTATTCTGTAAAACTCAAAGCA 57.767 30.769 0.00 0.00 0.00 3.91
527 529 9.529325 AAACCTTTATTCTGTAAAACTCAAAGC 57.471 29.630 0.00 0.00 0.00 3.51
538 540 9.109393 GCATCACTATGAAACCTTTATTCTGTA 57.891 33.333 0.00 0.00 34.84 2.74
539 541 7.611467 TGCATCACTATGAAACCTTTATTCTGT 59.389 33.333 0.00 0.00 34.84 3.41
540 542 7.988737 TGCATCACTATGAAACCTTTATTCTG 58.011 34.615 0.00 0.00 34.84 3.02
541 543 8.627403 CATGCATCACTATGAAACCTTTATTCT 58.373 33.333 0.00 0.00 34.84 2.40
542 544 8.623903 TCATGCATCACTATGAAACCTTTATTC 58.376 33.333 0.00 0.00 34.84 1.75
543 545 8.523915 TCATGCATCACTATGAAACCTTTATT 57.476 30.769 0.00 0.00 34.84 1.40
544 546 8.523915 TTCATGCATCACTATGAAACCTTTAT 57.476 30.769 0.00 0.00 39.57 1.40
545 547 7.415541 GCTTCATGCATCACTATGAAACCTTTA 60.416 37.037 0.00 0.00 41.30 1.85
546 548 6.626623 GCTTCATGCATCACTATGAAACCTTT 60.627 38.462 0.00 0.00 41.30 3.11
547 549 5.163581 GCTTCATGCATCACTATGAAACCTT 60.164 40.000 0.00 0.00 41.30 3.50
548 550 4.337555 GCTTCATGCATCACTATGAAACCT 59.662 41.667 0.00 0.00 41.30 3.50
549 551 4.604976 GCTTCATGCATCACTATGAAACC 58.395 43.478 0.00 0.00 41.30 3.27
563 565 7.537649 CACAAATCATACTCATATGCTTCATGC 59.462 37.037 0.00 0.00 38.50 4.06
564 566 8.780249 TCACAAATCATACTCATATGCTTCATG 58.220 33.333 0.00 0.00 38.50 3.07
565 567 8.913487 TCACAAATCATACTCATATGCTTCAT 57.087 30.769 0.00 0.00 38.50 2.57
566 568 8.735692 TTCACAAATCATACTCATATGCTTCA 57.264 30.769 0.00 0.00 38.50 3.02
567 569 9.049523 TCTTCACAAATCATACTCATATGCTTC 57.950 33.333 0.00 0.00 38.50 3.86
568 570 8.969260 TCTTCACAAATCATACTCATATGCTT 57.031 30.769 0.00 0.00 38.50 3.91
569 571 8.209584 ACTCTTCACAAATCATACTCATATGCT 58.790 33.333 0.00 0.00 38.50 3.79
570 572 8.375608 ACTCTTCACAAATCATACTCATATGC 57.624 34.615 0.00 0.00 38.50 3.14
573 575 9.942850 TGAAACTCTTCACAAATCATACTCATA 57.057 29.630 0.00 0.00 36.62 2.15
574 576 8.853077 TGAAACTCTTCACAAATCATACTCAT 57.147 30.769 0.00 0.00 36.62 2.90
588 590 1.673920 GGCGTTTGGTGAAACTCTTCA 59.326 47.619 0.00 0.00 39.56 3.02
589 591 1.947456 AGGCGTTTGGTGAAACTCTTC 59.053 47.619 0.00 0.00 39.56 2.87
590 592 2.052782 AGGCGTTTGGTGAAACTCTT 57.947 45.000 0.00 0.00 39.56 2.85
591 593 1.947456 GAAGGCGTTTGGTGAAACTCT 59.053 47.619 0.00 0.00 39.56 3.24
592 594 1.001706 GGAAGGCGTTTGGTGAAACTC 60.002 52.381 0.00 0.00 39.56 3.01
593 595 1.029681 GGAAGGCGTTTGGTGAAACT 58.970 50.000 0.00 0.00 39.56 2.66
594 596 0.317519 CGGAAGGCGTTTGGTGAAAC 60.318 55.000 0.00 0.00 38.51 2.78
595 597 0.464013 TCGGAAGGCGTTTGGTGAAA 60.464 50.000 0.00 0.00 0.00 2.69
596 598 0.464013 TTCGGAAGGCGTTTGGTGAA 60.464 50.000 0.00 0.00 0.00 3.18
597 599 0.882927 CTTCGGAAGGCGTTTGGTGA 60.883 55.000 9.93 0.00 0.00 4.02
598 600 0.882927 TCTTCGGAAGGCGTTTGGTG 60.883 55.000 17.19 0.00 0.00 4.17
599 601 0.179040 TTCTTCGGAAGGCGTTTGGT 60.179 50.000 17.19 0.00 0.00 3.67
600 602 0.517316 CTTCTTCGGAAGGCGTTTGG 59.483 55.000 17.19 0.00 45.52 3.28
609 611 6.485830 AATATCATGAGGACTTCTTCGGAA 57.514 37.500 0.09 0.00 0.00 4.30
610 612 7.782897 ATAATATCATGAGGACTTCTTCGGA 57.217 36.000 0.09 0.00 0.00 4.55
611 613 8.310382 AGAATAATATCATGAGGACTTCTTCGG 58.690 37.037 0.09 0.00 0.00 4.30
612 614 9.352784 GAGAATAATATCATGAGGACTTCTTCG 57.647 37.037 0.09 0.00 0.00 3.79
623 625 8.967918 CGGGGTAAGTAGAGAATAATATCATGA 58.032 37.037 0.00 0.00 0.00 3.07
624 626 8.750298 ACGGGGTAAGTAGAGAATAATATCATG 58.250 37.037 0.00 0.00 0.00 3.07
625 627 8.750298 CACGGGGTAAGTAGAGAATAATATCAT 58.250 37.037 0.00 0.00 0.00 2.45
626 628 7.309621 GCACGGGGTAAGTAGAGAATAATATCA 60.310 40.741 0.00 0.00 0.00 2.15
627 629 7.034397 GCACGGGGTAAGTAGAGAATAATATC 58.966 42.308 0.00 0.00 0.00 1.63
628 630 6.070938 GGCACGGGGTAAGTAGAGAATAATAT 60.071 42.308 0.00 0.00 0.00 1.28
629 631 5.244626 GGCACGGGGTAAGTAGAGAATAATA 59.755 44.000 0.00 0.00 0.00 0.98
630 632 4.040095 GGCACGGGGTAAGTAGAGAATAAT 59.960 45.833 0.00 0.00 0.00 1.28
631 633 3.385755 GGCACGGGGTAAGTAGAGAATAA 59.614 47.826 0.00 0.00 0.00 1.40
632 634 2.961062 GGCACGGGGTAAGTAGAGAATA 59.039 50.000 0.00 0.00 0.00 1.75
633 635 1.761198 GGCACGGGGTAAGTAGAGAAT 59.239 52.381 0.00 0.00 0.00 2.40
634 636 1.188863 GGCACGGGGTAAGTAGAGAA 58.811 55.000 0.00 0.00 0.00 2.87
635 637 0.333993 AGGCACGGGGTAAGTAGAGA 59.666 55.000 0.00 0.00 0.00 3.10
636 638 2.062971 TAGGCACGGGGTAAGTAGAG 57.937 55.000 0.00 0.00 0.00 2.43
637 639 2.761786 ATAGGCACGGGGTAAGTAGA 57.238 50.000 0.00 0.00 0.00 2.59
638 640 2.824341 CCTATAGGCACGGGGTAAGTAG 59.176 54.545 5.67 0.00 0.00 2.57
639 641 2.491455 CCCTATAGGCACGGGGTAAGTA 60.491 54.545 13.85 0.00 34.22 2.24
640 642 1.713297 CCTATAGGCACGGGGTAAGT 58.287 55.000 5.67 0.00 0.00 2.24
641 643 0.974383 CCCTATAGGCACGGGGTAAG 59.026 60.000 13.85 0.00 34.22 2.34
642 644 0.562177 TCCCTATAGGCACGGGGTAA 59.438 55.000 13.85 0.00 39.80 2.85
643 645 0.178953 GTCCCTATAGGCACGGGGTA 60.179 60.000 13.85 0.00 39.80 3.69
644 646 1.458967 GTCCCTATAGGCACGGGGT 60.459 63.158 13.85 0.00 39.80 4.95
645 647 2.214920 GGTCCCTATAGGCACGGGG 61.215 68.421 13.85 0.00 38.55 5.73
646 648 0.763223 AAGGTCCCTATAGGCACGGG 60.763 60.000 13.85 0.00 39.41 5.28
647 649 0.393077 CAAGGTCCCTATAGGCACGG 59.607 60.000 13.85 0.00 34.51 4.94
648 650 0.393077 CCAAGGTCCCTATAGGCACG 59.607 60.000 13.85 0.00 34.51 5.34
649 651 1.508256 ACCAAGGTCCCTATAGGCAC 58.492 55.000 13.85 9.01 34.51 5.01
650 652 2.686119 GTACCAAGGTCCCTATAGGCA 58.314 52.381 13.85 0.00 34.51 4.75
651 653 1.976404 GGTACCAAGGTCCCTATAGGC 59.024 57.143 13.85 0.26 34.51 3.93
652 654 3.632420 AGGTACCAAGGTCCCTATAGG 57.368 52.381 15.94 12.27 32.45 2.57
653 655 8.345306 AGATTATAGGTACCAAGGTCCCTATAG 58.655 40.741 22.25 0.00 44.67 1.31
654 656 8.120538 CAGATTATAGGTACCAAGGTCCCTATA 58.879 40.741 20.57 20.57 42.93 1.31
655 657 6.960542 CAGATTATAGGTACCAAGGTCCCTAT 59.039 42.308 22.24 22.24 45.41 2.57
656 658 6.105139 TCAGATTATAGGTACCAAGGTCCCTA 59.895 42.308 15.94 12.33 40.24 3.53
657 659 5.102783 TCAGATTATAGGTACCAAGGTCCCT 60.103 44.000 15.94 8.52 38.11 4.20
658 660 5.152934 TCAGATTATAGGTACCAAGGTCCC 58.847 45.833 15.94 0.00 0.00 4.46
659 661 5.839606 ACTCAGATTATAGGTACCAAGGTCC 59.160 44.000 15.94 0.00 0.00 4.46
660 662 6.980416 ACTCAGATTATAGGTACCAAGGTC 57.020 41.667 15.94 5.50 0.00 3.85
661 663 7.750947 AAACTCAGATTATAGGTACCAAGGT 57.249 36.000 15.94 0.00 0.00 3.50
662 664 8.893727 CAAAAACTCAGATTATAGGTACCAAGG 58.106 37.037 15.94 0.00 0.00 3.61
663 665 8.893727 CCAAAAACTCAGATTATAGGTACCAAG 58.106 37.037 15.94 0.00 0.00 3.61
664 666 8.607713 TCCAAAAACTCAGATTATAGGTACCAA 58.392 33.333 15.94 0.00 0.00 3.67
665 667 8.153221 TCCAAAAACTCAGATTATAGGTACCA 57.847 34.615 15.94 0.00 0.00 3.25
666 668 9.628500 AATCCAAAAACTCAGATTATAGGTACC 57.372 33.333 2.73 2.73 0.00 3.34
669 671 9.533831 ACAAATCCAAAAACTCAGATTATAGGT 57.466 29.630 0.00 0.00 0.00 3.08
699 701 6.884836 GTCAACCAGATACTACCTCCATTTTT 59.115 38.462 0.00 0.00 0.00 1.94
700 702 6.415573 GTCAACCAGATACTACCTCCATTTT 58.584 40.000 0.00 0.00 0.00 1.82
701 703 5.395324 CGTCAACCAGATACTACCTCCATTT 60.395 44.000 0.00 0.00 0.00 2.32
702 704 4.099573 CGTCAACCAGATACTACCTCCATT 59.900 45.833 0.00 0.00 0.00 3.16
703 705 3.637229 CGTCAACCAGATACTACCTCCAT 59.363 47.826 0.00 0.00 0.00 3.41
704 706 3.021695 CGTCAACCAGATACTACCTCCA 58.978 50.000 0.00 0.00 0.00 3.86
705 707 3.285484 TCGTCAACCAGATACTACCTCC 58.715 50.000 0.00 0.00 0.00 4.30
706 708 4.319622 CGATCGTCAACCAGATACTACCTC 60.320 50.000 7.03 0.00 0.00 3.85
707 709 3.564644 CGATCGTCAACCAGATACTACCT 59.435 47.826 7.03 0.00 0.00 3.08
708 710 3.852572 GCGATCGTCAACCAGATACTACC 60.853 52.174 17.81 0.00 0.00 3.18
709 711 3.298317 GCGATCGTCAACCAGATACTAC 58.702 50.000 17.81 0.00 0.00 2.73
710 712 2.292569 GGCGATCGTCAACCAGATACTA 59.707 50.000 16.20 0.00 0.00 1.82
711 713 1.067212 GGCGATCGTCAACCAGATACT 59.933 52.381 16.20 0.00 0.00 2.12
712 714 1.202371 TGGCGATCGTCAACCAGATAC 60.202 52.381 21.98 0.00 0.00 2.24
713 715 1.107945 TGGCGATCGTCAACCAGATA 58.892 50.000 21.98 0.00 0.00 1.98
714 716 0.249120 TTGGCGATCGTCAACCAGAT 59.751 50.000 29.85 0.00 34.53 2.90
715 717 0.389817 CTTGGCGATCGTCAACCAGA 60.390 55.000 29.85 10.96 34.53 3.86
716 718 1.361668 CCTTGGCGATCGTCAACCAG 61.362 60.000 29.85 20.39 34.53 4.00
717 719 1.375396 CCTTGGCGATCGTCAACCA 60.375 57.895 29.85 18.64 34.53 3.67
718 720 0.672401 TTCCTTGGCGATCGTCAACC 60.672 55.000 29.85 16.17 34.53 3.77
719 721 1.128692 CTTTCCTTGGCGATCGTCAAC 59.871 52.381 29.85 12.03 34.53 3.18
720 722 1.001520 TCTTTCCTTGGCGATCGTCAA 59.998 47.619 31.02 31.02 37.39 3.18
721 723 0.606096 TCTTTCCTTGGCGATCGTCA 59.394 50.000 20.25 20.25 0.00 4.35
722 724 1.281899 CTCTTTCCTTGGCGATCGTC 58.718 55.000 13.98 13.98 0.00 4.20
723 725 0.108138 CCTCTTTCCTTGGCGATCGT 60.108 55.000 17.81 0.00 0.00 3.73
724 726 1.432270 GCCTCTTTCCTTGGCGATCG 61.432 60.000 11.69 11.69 37.11 3.69
725 727 2.398803 GCCTCTTTCCTTGGCGATC 58.601 57.895 0.00 0.00 37.11 3.69
726 728 4.645809 GCCTCTTTCCTTGGCGAT 57.354 55.556 0.00 0.00 37.11 4.58
729 731 0.107459 ATCGAGCCTCTTTCCTTGGC 60.107 55.000 0.00 0.00 46.42 4.52
730 732 2.093235 AGAATCGAGCCTCTTTCCTTGG 60.093 50.000 0.00 0.00 0.00 3.61
731 733 3.258971 AGAATCGAGCCTCTTTCCTTG 57.741 47.619 0.00 0.00 0.00 3.61
732 734 3.990959 AAGAATCGAGCCTCTTTCCTT 57.009 42.857 0.00 0.00 0.00 3.36
733 735 3.867857 GAAAGAATCGAGCCTCTTTCCT 58.132 45.455 23.85 6.62 46.24 3.36
736 738 5.819901 CCTATTGAAAGAATCGAGCCTCTTT 59.180 40.000 15.83 15.83 43.03 2.52
737 739 5.363939 CCTATTGAAAGAATCGAGCCTCTT 58.636 41.667 0.00 0.00 33.25 2.85
738 740 4.202305 CCCTATTGAAAGAATCGAGCCTCT 60.202 45.833 0.00 0.00 0.00 3.69
739 741 4.061596 CCCTATTGAAAGAATCGAGCCTC 58.938 47.826 0.00 0.00 0.00 4.70
740 742 3.181450 CCCCTATTGAAAGAATCGAGCCT 60.181 47.826 0.00 0.00 0.00 4.58
741 743 3.142174 CCCCTATTGAAAGAATCGAGCC 58.858 50.000 0.00 0.00 0.00 4.70
742 744 4.073293 TCCCCTATTGAAAGAATCGAGC 57.927 45.455 0.00 0.00 0.00 5.03
743 745 4.926238 CGATCCCCTATTGAAAGAATCGAG 59.074 45.833 0.00 0.00 0.00 4.04
744 746 4.587262 TCGATCCCCTATTGAAAGAATCGA 59.413 41.667 0.00 0.00 34.98 3.59
745 747 4.883083 TCGATCCCCTATTGAAAGAATCG 58.117 43.478 0.00 0.00 0.00 3.34
746 748 6.467677 TGATCGATCCCCTATTGAAAGAATC 58.532 40.000 22.31 0.00 31.49 2.52
747 749 6.439636 TGATCGATCCCCTATTGAAAGAAT 57.560 37.500 22.31 0.00 31.49 2.40
748 750 5.887214 TGATCGATCCCCTATTGAAAGAA 57.113 39.130 22.31 0.00 31.49 2.52
749 751 5.366768 AGTTGATCGATCCCCTATTGAAAGA 59.633 40.000 22.31 0.00 31.49 2.52
750 752 5.615289 AGTTGATCGATCCCCTATTGAAAG 58.385 41.667 22.31 0.00 31.49 2.62
751 753 5.630415 AGTTGATCGATCCCCTATTGAAA 57.370 39.130 22.31 4.06 31.49 2.69
752 754 5.630415 AAGTTGATCGATCCCCTATTGAA 57.370 39.130 22.31 4.78 31.49 2.69
753 755 5.630415 AAAGTTGATCGATCCCCTATTGA 57.370 39.130 22.31 0.00 32.30 2.57
754 756 7.986085 AATAAAGTTGATCGATCCCCTATTG 57.014 36.000 22.31 0.00 0.00 1.90
755 757 8.996651 AAAATAAAGTTGATCGATCCCCTATT 57.003 30.769 22.31 13.85 0.00 1.73
756 758 9.726438 CTAAAATAAAGTTGATCGATCCCCTAT 57.274 33.333 22.31 8.83 0.00 2.57
757 759 8.154856 CCTAAAATAAAGTTGATCGATCCCCTA 58.845 37.037 22.31 7.46 0.00 3.53
758 760 6.998673 CCTAAAATAAAGTTGATCGATCCCCT 59.001 38.462 22.31 14.48 0.00 4.79
759 761 6.294010 GCCTAAAATAAAGTTGATCGATCCCC 60.294 42.308 22.31 12.47 0.00 4.81
760 762 6.486993 AGCCTAAAATAAAGTTGATCGATCCC 59.513 38.462 22.31 12.82 0.00 3.85
761 763 7.226720 TCAGCCTAAAATAAAGTTGATCGATCC 59.773 37.037 22.31 8.20 0.00 3.36
762 764 8.142994 TCAGCCTAAAATAAAGTTGATCGATC 57.857 34.615 18.72 18.72 0.00 3.69
763 765 7.227512 CCTCAGCCTAAAATAAAGTTGATCGAT 59.772 37.037 0.00 0.00 0.00 3.59
764 766 6.538742 CCTCAGCCTAAAATAAAGTTGATCGA 59.461 38.462 0.00 0.00 0.00 3.59
765 767 6.238484 CCCTCAGCCTAAAATAAAGTTGATCG 60.238 42.308 0.00 0.00 0.00 3.69
766 768 6.039829 CCCCTCAGCCTAAAATAAAGTTGATC 59.960 42.308 0.00 0.00 0.00 2.92
767 769 5.893824 CCCCTCAGCCTAAAATAAAGTTGAT 59.106 40.000 0.00 0.00 0.00 2.57
768 770 5.014755 TCCCCTCAGCCTAAAATAAAGTTGA 59.985 40.000 0.00 0.00 0.00 3.18
769 771 5.261216 TCCCCTCAGCCTAAAATAAAGTTG 58.739 41.667 0.00 0.00 0.00 3.16
770 772 5.530176 TCCCCTCAGCCTAAAATAAAGTT 57.470 39.130 0.00 0.00 0.00 2.66
771 773 5.449553 CATCCCCTCAGCCTAAAATAAAGT 58.550 41.667 0.00 0.00 0.00 2.66
772 774 4.829492 CCATCCCCTCAGCCTAAAATAAAG 59.171 45.833 0.00 0.00 0.00 1.85
773 775 4.480537 TCCATCCCCTCAGCCTAAAATAAA 59.519 41.667 0.00 0.00 0.00 1.40
774 776 4.051478 TCCATCCCCTCAGCCTAAAATAA 58.949 43.478 0.00 0.00 0.00 1.40
775 777 3.675613 TCCATCCCCTCAGCCTAAAATA 58.324 45.455 0.00 0.00 0.00 1.40
776 778 2.502745 TCCATCCCCTCAGCCTAAAAT 58.497 47.619 0.00 0.00 0.00 1.82
777 779 1.979809 TCCATCCCCTCAGCCTAAAA 58.020 50.000 0.00 0.00 0.00 1.52
778 780 2.057922 GATCCATCCCCTCAGCCTAAA 58.942 52.381 0.00 0.00 0.00 1.85
779 781 1.061424 TGATCCATCCCCTCAGCCTAA 60.061 52.381 0.00 0.00 0.00 2.69
780 782 0.567687 TGATCCATCCCCTCAGCCTA 59.432 55.000 0.00 0.00 0.00 3.93
781 783 0.327867 TTGATCCATCCCCTCAGCCT 60.328 55.000 0.00 0.00 0.00 4.58
782 784 0.179006 GTTGATCCATCCCCTCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
783 785 0.842635 AGTTGATCCATCCCCTCAGC 59.157 55.000 0.00 0.00 0.00 4.26
784 786 3.070734 CACTAGTTGATCCATCCCCTCAG 59.929 52.174 0.00 0.00 0.00 3.35
785 787 3.041211 CACTAGTTGATCCATCCCCTCA 58.959 50.000 0.00 0.00 0.00 3.86
786 788 3.309296 TCACTAGTTGATCCATCCCCTC 58.691 50.000 0.00 0.00 0.00 4.30
787 789 3.421394 TCACTAGTTGATCCATCCCCT 57.579 47.619 0.00 0.00 0.00 4.79
788 790 3.741388 CGTTCACTAGTTGATCCATCCCC 60.741 52.174 0.00 0.00 32.84 4.81
789 791 3.118738 ACGTTCACTAGTTGATCCATCCC 60.119 47.826 0.00 0.00 32.84 3.85
790 792 4.124851 ACGTTCACTAGTTGATCCATCC 57.875 45.455 0.00 0.00 32.84 3.51
791 793 6.481954 AAAACGTTCACTAGTTGATCCATC 57.518 37.500 0.00 0.00 32.84 3.51
792 794 7.414098 GCATAAAACGTTCACTAGTTGATCCAT 60.414 37.037 0.00 0.00 32.84 3.41
793 795 6.128391 GCATAAAACGTTCACTAGTTGATCCA 60.128 38.462 0.00 0.00 32.84 3.41
794 796 6.128391 TGCATAAAACGTTCACTAGTTGATCC 60.128 38.462 0.00 0.00 32.84 3.36
795 797 6.827641 TGCATAAAACGTTCACTAGTTGATC 58.172 36.000 0.00 0.00 32.84 2.92
796 798 6.795098 TGCATAAAACGTTCACTAGTTGAT 57.205 33.333 0.00 0.00 32.84 2.57
797 799 6.606234 TTGCATAAAACGTTCACTAGTTGA 57.394 33.333 0.00 0.00 0.00 3.18
798 800 7.672351 TTTTGCATAAAACGTTCACTAGTTG 57.328 32.000 0.00 0.00 31.13 3.16
799 801 7.971722 ACTTTTTGCATAAAACGTTCACTAGTT 59.028 29.630 0.00 0.00 35.49 2.24
800 802 7.431084 CACTTTTTGCATAAAACGTTCACTAGT 59.569 33.333 0.00 0.00 36.48 2.57
801 803 7.431084 ACACTTTTTGCATAAAACGTTCACTAG 59.569 33.333 0.00 0.00 36.48 2.57
802 804 7.251994 ACACTTTTTGCATAAAACGTTCACTA 58.748 30.769 0.00 0.00 36.48 2.74
803 805 6.096695 ACACTTTTTGCATAAAACGTTCACT 58.903 32.000 0.00 0.00 36.48 3.41
804 806 6.325849 ACACTTTTTGCATAAAACGTTCAC 57.674 33.333 0.00 0.00 36.48 3.18
805 807 6.952935 AACACTTTTTGCATAAAACGTTCA 57.047 29.167 0.00 0.00 36.48 3.18
806 808 7.671827 AGAAACACTTTTTGCATAAAACGTTC 58.328 30.769 0.00 9.86 36.48 3.95
807 809 7.589574 AGAAACACTTTTTGCATAAAACGTT 57.410 28.000 0.00 0.00 36.48 3.99
808 810 7.589574 AAGAAACACTTTTTGCATAAAACGT 57.410 28.000 3.89 1.63 38.37 3.99
822 824 3.430236 CGCTTGGGGAAAAAGAAACACTT 60.430 43.478 0.00 0.00 40.98 3.16
823 825 2.100749 CGCTTGGGGAAAAAGAAACACT 59.899 45.455 0.00 0.00 0.00 3.55
824 826 2.100087 TCGCTTGGGGAAAAAGAAACAC 59.900 45.455 0.00 0.00 0.00 3.32
825 827 2.100087 GTCGCTTGGGGAAAAAGAAACA 59.900 45.455 0.00 0.00 0.00 2.83
826 828 2.361119 AGTCGCTTGGGGAAAAAGAAAC 59.639 45.455 0.00 0.00 0.00 2.78
827 829 2.621526 GAGTCGCTTGGGGAAAAAGAAA 59.378 45.455 0.00 0.00 0.00 2.52
828 830 2.227194 GAGTCGCTTGGGGAAAAAGAA 58.773 47.619 0.00 0.00 0.00 2.52
829 831 1.142060 TGAGTCGCTTGGGGAAAAAGA 59.858 47.619 0.00 0.00 0.00 2.52
830 832 1.604604 TGAGTCGCTTGGGGAAAAAG 58.395 50.000 0.00 0.00 0.00 2.27
840 842 1.757699 GGACCCTATCTTGAGTCGCTT 59.242 52.381 0.00 0.00 0.00 4.68
915 919 1.155042 GGACGGTAGCTACGATCGAT 58.845 55.000 24.34 8.79 34.93 3.59
947 952 0.898320 CATGAGAAGACAGACCGGGT 59.102 55.000 6.32 0.00 0.00 5.28
950 955 2.285827 GGTCATGAGAAGACAGACCG 57.714 55.000 0.00 0.00 39.33 4.79
964 969 0.398664 ACCCTAGCCGCTAAGGTCAT 60.399 55.000 14.08 0.00 43.70 3.06
1014 1019 1.342819 GATTGCGATCCACTAGCCTCT 59.657 52.381 2.08 0.00 0.00 3.69
1031 1036 3.053320 GGGATCTTCAGGGACTTTGGATT 60.053 47.826 0.00 0.00 34.60 3.01
1040 1045 2.044793 AACACTGGGATCTTCAGGGA 57.955 50.000 20.25 0.00 37.84 4.20
1222 1230 1.001641 CCTCCTTGGCTGGGTTCTG 60.002 63.158 0.00 0.00 0.00 3.02
1223 1232 1.464198 ACCTCCTTGGCTGGGTTCT 60.464 57.895 0.00 0.00 40.22 3.01
1281 1298 5.155278 TCCGGTCTGCTAGACAATTAAAA 57.845 39.130 15.22 0.00 46.79 1.52
1300 1317 0.249868 TGATGGAGCGCCTTATTCCG 60.250 55.000 8.34 0.00 33.60 4.30
1325 1342 1.907936 CCATGCCCTTGAAATCCCAAA 59.092 47.619 0.00 0.00 0.00 3.28
1363 1380 2.426024 CCAGGTTCTTGAAGCCATCATG 59.574 50.000 8.68 0.00 38.03 3.07
1429 1446 0.339859 AGCACCCTATCCAGGAGTCA 59.660 55.000 0.00 0.00 45.91 3.41
1436 1453 2.022428 TCCCTCTTAAGCACCCTATCCA 60.022 50.000 0.00 0.00 0.00 3.41
1442 1459 0.107459 CTGCTCCCTCTTAAGCACCC 60.107 60.000 0.00 0.00 43.30 4.61
1523 1540 6.238374 CCGTATGAACTCACCAATTAATCCAC 60.238 42.308 0.00 0.00 0.00 4.02
1530 1547 3.713826 ACCCGTATGAACTCACCAATT 57.286 42.857 0.00 0.00 0.00 2.32
1581 1598 7.294286 CCTTTGTAAAGCCAACAAACCTTGTT 61.294 38.462 5.11 0.00 43.13 2.83
1733 1750 3.203040 AGCAGCATGTATAAAAGGACCCT 59.797 43.478 0.00 0.00 39.31 4.34
1748 1766 2.507944 CGCCCCTTCTAGCAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
1808 1826 2.440147 CACCTGCACCCCATTCCA 59.560 61.111 0.00 0.00 0.00 3.53
1813 1831 3.831637 AAAGGCACCTGCACCCCA 61.832 61.111 0.00 0.00 44.36 4.96
1838 1856 2.424667 CCATAAGCATTCCCATCACCCA 60.425 50.000 0.00 0.00 0.00 4.51
1877 1895 0.250467 ACCTCGGCCATGTGATATGC 60.250 55.000 2.24 0.00 0.00 3.14
1880 1898 1.040893 ACGACCTCGGCCATGTGATA 61.041 55.000 2.24 0.00 44.95 2.15
1899 1917 0.981183 AGTTCCGGTGCTCATTACCA 59.019 50.000 0.00 0.00 38.11 3.25
1930 1948 7.607991 GGCATGTATCCTAGTATTTTGCATACT 59.392 37.037 4.04 4.04 38.32 2.12
1931 1949 7.148239 GGGCATGTATCCTAGTATTTTGCATAC 60.148 40.741 0.00 0.00 0.00 2.39
1932 1950 6.884295 GGGCATGTATCCTAGTATTTTGCATA 59.116 38.462 0.00 0.00 0.00 3.14
1933 1951 5.711976 GGGCATGTATCCTAGTATTTTGCAT 59.288 40.000 0.00 0.00 0.00 3.96
1934 1952 5.070001 GGGCATGTATCCTAGTATTTTGCA 58.930 41.667 0.00 0.00 0.00 4.08
1935 1953 5.070001 TGGGCATGTATCCTAGTATTTTGC 58.930 41.667 0.00 0.00 0.00 3.68
1936 1954 5.707298 CCTGGGCATGTATCCTAGTATTTTG 59.293 44.000 0.00 0.00 31.07 2.44
1937 1955 5.222130 CCCTGGGCATGTATCCTAGTATTTT 60.222 44.000 0.00 0.00 31.07 1.82
1938 1956 4.289672 CCCTGGGCATGTATCCTAGTATTT 59.710 45.833 0.00 0.00 31.07 1.40
1939 1957 3.846588 CCCTGGGCATGTATCCTAGTATT 59.153 47.826 0.00 0.00 31.07 1.89
1940 1958 3.454858 CCCTGGGCATGTATCCTAGTAT 58.545 50.000 0.00 0.00 31.07 2.12
1941 1959 2.494627 CCCCTGGGCATGTATCCTAGTA 60.495 54.545 7.39 0.00 31.07 1.82
1942 1960 1.734655 CCCTGGGCATGTATCCTAGT 58.265 55.000 0.00 0.00 31.07 2.57
1943 1961 0.987294 CCCCTGGGCATGTATCCTAG 59.013 60.000 7.39 0.00 32.62 3.02
1944 1962 3.180449 CCCCTGGGCATGTATCCTA 57.820 57.895 7.39 0.00 0.00 2.94
1945 1963 4.008453 CCCCTGGGCATGTATCCT 57.992 61.111 7.39 0.00 0.00 3.24
1955 1973 1.551883 CAAAAGATTCAAGCCCCTGGG 59.448 52.381 5.50 5.50 38.57 4.45
1956 1974 2.232208 GTCAAAAGATTCAAGCCCCTGG 59.768 50.000 0.00 0.00 0.00 4.45
1957 1975 2.232208 GGTCAAAAGATTCAAGCCCCTG 59.768 50.000 0.00 0.00 0.00 4.45
1958 1976 2.529632 GGTCAAAAGATTCAAGCCCCT 58.470 47.619 0.00 0.00 0.00 4.79
1959 1977 1.550524 GGGTCAAAAGATTCAAGCCCC 59.449 52.381 0.00 0.00 0.00 5.80
1960 1978 1.550524 GGGGTCAAAAGATTCAAGCCC 59.449 52.381 0.00 0.00 40.19 5.19
1961 1979 2.029020 GTGGGGTCAAAAGATTCAAGCC 60.029 50.000 0.00 0.00 0.00 4.35
1962 1980 2.893489 AGTGGGGTCAAAAGATTCAAGC 59.107 45.455 0.00 0.00 0.00 4.01
1963 1981 3.256631 CCAGTGGGGTCAAAAGATTCAAG 59.743 47.826 0.00 0.00 0.00 3.02
1964 1982 3.117322 TCCAGTGGGGTCAAAAGATTCAA 60.117 43.478 9.92 0.00 38.11 2.69
1965 1983 2.445145 TCCAGTGGGGTCAAAAGATTCA 59.555 45.455 9.92 0.00 38.11 2.57
1966 1984 2.820197 GTCCAGTGGGGTCAAAAGATTC 59.180 50.000 9.92 0.00 38.11 2.52
1967 1985 2.814097 CGTCCAGTGGGGTCAAAAGATT 60.814 50.000 9.92 0.00 38.11 2.40
1968 1986 1.271379 CGTCCAGTGGGGTCAAAAGAT 60.271 52.381 9.92 0.00 38.11 2.40
1969 1987 0.107831 CGTCCAGTGGGGTCAAAAGA 59.892 55.000 9.92 0.00 38.11 2.52
1970 1988 0.889186 CCGTCCAGTGGGGTCAAAAG 60.889 60.000 9.92 0.00 38.11 2.27
1971 1989 1.149627 CCGTCCAGTGGGGTCAAAA 59.850 57.895 9.92 0.00 38.11 2.44
1972 1990 2.824880 CCCGTCCAGTGGGGTCAAA 61.825 63.158 9.92 0.00 43.39 2.69
1973 1991 3.246112 CCCGTCCAGTGGGGTCAA 61.246 66.667 9.92 0.00 43.39 3.18
2015 2033 4.870363 ACAAGCGTTTGTAGCATTGAAAT 58.130 34.783 16.52 0.00 45.45 2.17
2063 2083 1.210478 AGTTGTGTCTCACCAACAGCT 59.790 47.619 5.45 0.00 32.30 4.24
2074 2094 1.477558 CCTTCTGCCCAAGTTGTGTCT 60.478 52.381 1.45 0.00 0.00 3.41
2087 2107 0.182061 TGAGGGCATCATCCTTCTGC 59.818 55.000 0.00 0.00 34.21 4.26
2102 2122 1.699083 ACCCTTTTGCCCAAAATGAGG 59.301 47.619 6.64 9.98 39.29 3.86
2122 2142 2.097680 TGTGCTCGAATCATCTGCAA 57.902 45.000 0.00 0.00 35.52 4.08
2123 2143 2.207590 GATGTGCTCGAATCATCTGCA 58.792 47.619 13.36 3.64 36.18 4.41
2141 2161 6.605471 TCTTCAACAGTAGTGGTATGTGAT 57.395 37.500 1.92 0.00 0.00 3.06
2147 2167 8.107729 TCTATCTCTTCTTCAACAGTAGTGGTA 58.892 37.037 1.92 0.00 0.00 3.25
2152 2172 7.338196 TCCTGTCTATCTCTTCTTCAACAGTAG 59.662 40.741 0.00 0.00 32.88 2.57
2158 2178 7.326454 CACATTCCTGTCTATCTCTTCTTCAA 58.674 38.462 0.00 0.00 31.62 2.69
2167 2187 1.414181 CGCCCACATTCCTGTCTATCT 59.586 52.381 0.00 0.00 31.62 1.98
2169 2189 0.179045 GCGCCCACATTCCTGTCTAT 60.179 55.000 0.00 0.00 31.62 1.98
2179 2199 4.740822 GGACAAGGGCGCCCACAT 62.741 66.667 45.13 30.02 38.92 3.21
2199 2219 2.711009 CCCTATCTGCTGTATTCCCCAA 59.289 50.000 0.00 0.00 0.00 4.12
2206 2226 2.330216 GACCCACCCTATCTGCTGTAT 58.670 52.381 0.00 0.00 0.00 2.29
2207 2227 1.007842 TGACCCACCCTATCTGCTGTA 59.992 52.381 0.00 0.00 0.00 2.74
2216 2236 1.358152 CCTCAAACTGACCCACCCTA 58.642 55.000 0.00 0.00 0.00 3.53
2226 2246 0.955919 GGTTCGGCTCCCTCAAACTG 60.956 60.000 0.00 0.00 0.00 3.16
2240 2260 2.743928 GAGCTGCTGGGTGGTTCG 60.744 66.667 7.01 0.00 0.00 3.95
2243 2263 2.541907 ATTGGAGCTGCTGGGTGGT 61.542 57.895 7.01 0.00 0.00 4.16
2258 2278 3.008375 TCTTCTGAGGAGTTCCACCATTG 59.992 47.826 0.28 0.00 38.89 2.82
2276 2296 5.922739 AATTTTTCCGGTTTGCATTCTTC 57.077 34.783 0.00 0.00 0.00 2.87
2297 2317 4.631131 CCGCACCATCATCTGTCTTATAA 58.369 43.478 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.