Multiple sequence alignment - TraesCS6D01G134300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G134300 chr6D 100.000 5986 0 0 1 5986 102121462 102127447 0.000000e+00 11055
1 TraesCS6D01G134300 chr6A 94.634 3671 114 34 153 3791 123454966 123458585 0.000000e+00 5611
2 TraesCS6D01G134300 chr6A 95.622 731 12 6 4359 5071 123459183 123459911 0.000000e+00 1155
3 TraesCS6D01G134300 chr6A 98.355 547 8 1 3819 4365 123458581 123459126 0.000000e+00 959
4 TraesCS6D01G134300 chr6A 89.482 618 39 11 5172 5777 123460278 123460881 0.000000e+00 758
5 TraesCS6D01G134300 chr6A 91.473 129 10 1 1 128 123454658 123454786 6.170000e-40 176
6 TraesCS6D01G134300 chr6A 96.939 98 3 0 5088 5185 123459896 123459993 1.330000e-36 165
7 TraesCS6D01G134300 chr6A 90.217 92 5 3 5769 5860 123499644 123499731 3.790000e-22 117
8 TraesCS6D01G134300 chr6B 92.698 3369 152 37 9 3333 187838022 187841340 0.000000e+00 4772
9 TraesCS6D01G134300 chr6B 93.956 728 21 6 4359 5071 187842616 187843335 0.000000e+00 1079
10 TraesCS6D01G134300 chr6B 96.745 553 11 3 3819 4365 187842004 187842555 0.000000e+00 915
11 TraesCS6D01G134300 chr6B 99.317 293 2 0 3332 3624 187841428 187841720 1.140000e-146 531
12 TraesCS6D01G134300 chr6B 89.055 402 28 11 5087 5486 187843319 187843706 9.020000e-133 484
13 TraesCS6D01G134300 chr6B 97.093 172 2 1 3620 3791 187841840 187842008 2.730000e-73 287


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G134300 chr6D 102121462 102127447 5985 False 11055.000000 11055 100.000000 1 5986 1 chr6D.!!$F1 5985
1 TraesCS6D01G134300 chr6A 123454658 123460881 6223 False 1470.666667 5611 94.417500 1 5777 6 chr6A.!!$F2 5776
2 TraesCS6D01G134300 chr6B 187838022 187843706 5684 False 1344.666667 4772 94.810667 9 5486 6 chr6B.!!$F1 5477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1107 0.033405 TCGAGTAGGGGGAGGACTTG 60.033 60.000 0.00 0.0 0.0 3.16 F
1626 1828 0.107897 TGATGTAAGCGCGGATTGGT 60.108 50.000 8.83 0.0 0.0 3.67 F
2405 2615 1.423541 TGCTGTTAACCCCTGATGTGT 59.576 47.619 2.48 0.0 0.0 3.72 F
3284 3494 1.533625 TCTGTGGTAATGTTGGCTGC 58.466 50.000 0.00 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 2729 0.609662 ATGACACCCATTGCCAAAGC 59.390 50.000 0.0 0.0 40.48 3.51 R
3364 3663 2.910319 AGCATGACCACCTTTGTACCTA 59.090 45.455 0.0 0.0 0.00 3.08 R
3813 4236 0.106519 AAGGAGCAGCAACAAGTGGT 60.107 50.000 0.0 0.0 38.97 4.16 R
5083 5597 0.687354 AGAACCAATCACAGAGCCGT 59.313 50.000 0.0 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.092092 CGCATCCTGACAATGACAAAATAAA 58.908 36.000 0.00 0.00 0.00 1.40
83 85 8.200120 CCAATTAGAAGATGATGACAGAGTACA 58.800 37.037 0.00 0.00 0.00 2.90
99 101 9.646427 GACAGAGTACATTCTAAGTGAATTCTT 57.354 33.333 7.05 0.00 43.00 2.52
110 112 8.731275 TCTAAGTGAATTCTTCAAGAAACACA 57.269 30.769 27.37 16.45 42.36 3.72
128 130 7.491696 AGAAACACAACAAGTCAGTAGTAAGTC 59.508 37.037 0.00 0.00 0.00 3.01
129 131 6.216801 ACACAACAAGTCAGTAGTAAGTCA 57.783 37.500 0.00 0.00 0.00 3.41
130 132 6.273825 ACACAACAAGTCAGTAGTAAGTCAG 58.726 40.000 0.00 0.00 0.00 3.51
139 282 8.445275 AGTCAGTAGTAAGTCAGATATCTGTG 57.555 38.462 27.80 17.08 44.12 3.66
150 293 7.271511 AGTCAGATATCTGTGAACTGAAATCC 58.728 38.462 27.80 0.64 44.12 3.01
161 318 7.254852 TGTGAACTGAAATCCTAAAACAACAC 58.745 34.615 0.00 0.00 0.00 3.32
208 365 1.072266 ACCAGCATAAGGTTCCACCA 58.928 50.000 0.00 0.00 41.95 4.17
236 393 1.680989 GCCATGGCCGGGTAAACTT 60.681 57.895 27.24 0.00 34.56 2.66
237 394 1.944234 GCCATGGCCGGGTAAACTTG 61.944 60.000 27.24 0.00 34.56 3.16
272 429 5.787953 TCATCTGAATTCTGAGAGCCTAG 57.212 43.478 18.38 0.00 0.00 3.02
277 434 3.129462 TGAATTCTGAGAGCCTAGACACG 59.871 47.826 7.05 0.00 0.00 4.49
280 437 2.085320 TCTGAGAGCCTAGACACGTTC 58.915 52.381 0.00 0.00 0.00 3.95
282 439 0.099082 GAGAGCCTAGACACGTTCCG 59.901 60.000 0.00 0.00 0.00 4.30
290 447 2.789203 GACACGTTCCGCTCATCGC 61.789 63.158 0.00 0.00 36.73 4.58
300 457 1.148157 CGCTCATCGCCCACACTAAG 61.148 60.000 0.00 0.00 34.21 2.18
309 466 0.824109 CCCACACTAAGAGGCATCGA 59.176 55.000 0.00 0.00 0.00 3.59
313 470 2.349886 CACACTAAGAGGCATCGAAAGC 59.650 50.000 4.77 4.77 0.00 3.51
327 484 3.320626 TCGAAAGCTCATGAACAGAGTG 58.679 45.455 0.00 0.00 35.55 3.51
328 485 2.414481 CGAAAGCTCATGAACAGAGTGG 59.586 50.000 0.00 0.00 35.55 4.00
407 571 1.915228 GCCAACCCTGGATAGCTGA 59.085 57.895 0.00 0.00 46.92 4.26
409 573 0.179034 CCAACCCTGGATAGCTGAGC 60.179 60.000 0.00 0.00 46.92 4.26
410 574 0.835941 CAACCCTGGATAGCTGAGCT 59.164 55.000 13.25 13.25 43.41 4.09
411 575 0.835941 AACCCTGGATAGCTGAGCTG 59.164 55.000 18.79 0.00 40.10 4.24
412 576 1.071128 CCCTGGATAGCTGAGCTGC 59.929 63.158 18.79 8.93 40.10 5.25
413 577 1.300775 CCTGGATAGCTGAGCTGCG 60.301 63.158 18.79 0.39 40.10 5.18
414 578 1.955157 CTGGATAGCTGAGCTGCGC 60.955 63.158 18.79 0.00 40.10 6.09
415 579 2.366480 CTGGATAGCTGAGCTGCGCT 62.366 60.000 18.79 10.78 43.88 5.92
416 580 1.955157 GGATAGCTGAGCTGCGCTG 60.955 63.158 18.79 10.04 39.88 5.18
417 581 2.588314 ATAGCTGAGCTGCGCTGC 60.588 61.111 29.38 29.38 39.88 5.25
418 582 3.381333 ATAGCTGAGCTGCGCTGCA 62.381 57.895 35.70 18.82 39.88 4.41
536 701 2.122167 AACCCGAAGCAACCGCAAA 61.122 52.632 0.00 0.00 42.27 3.68
778 948 4.457496 CCCGCATCAGCTCGGTGT 62.457 66.667 10.34 0.00 43.87 4.16
779 949 2.887568 CCGCATCAGCTCGGTGTC 60.888 66.667 3.49 0.00 40.72 3.67
781 951 2.581354 GCATCAGCTCGGTGTCCT 59.419 61.111 0.00 0.00 37.91 3.85
782 952 1.520342 GCATCAGCTCGGTGTCCTC 60.520 63.158 0.00 0.00 37.91 3.71
784 954 1.305297 ATCAGCTCGGTGTCCTCCA 60.305 57.895 0.00 0.00 0.00 3.86
786 956 2.203640 AGCTCGGTGTCCTCCACA 60.204 61.111 0.00 0.00 46.44 4.17
787 957 1.610673 AGCTCGGTGTCCTCCACAT 60.611 57.895 0.00 0.00 46.44 3.21
844 1035 4.747108 CAGAATTCTCTCGCGATTGGTAAT 59.253 41.667 10.36 2.87 0.00 1.89
846 1037 3.793797 TTCTCTCGCGATTGGTAATCA 57.206 42.857 10.36 0.00 37.78 2.57
848 1039 3.444916 TCTCTCGCGATTGGTAATCAAC 58.555 45.455 10.36 0.00 38.31 3.18
849 1040 3.130516 TCTCTCGCGATTGGTAATCAACT 59.869 43.478 10.36 0.00 38.31 3.16
850 1041 4.337274 TCTCTCGCGATTGGTAATCAACTA 59.663 41.667 10.36 0.00 38.31 2.24
852 1043 3.110358 TCGCGATTGGTAATCAACTACG 58.890 45.455 3.71 0.00 38.31 3.51
914 1107 0.033405 TCGAGTAGGGGGAGGACTTG 60.033 60.000 0.00 0.00 0.00 3.16
915 1108 1.043673 CGAGTAGGGGGAGGACTTGG 61.044 65.000 0.00 0.00 0.00 3.61
916 1109 0.691413 GAGTAGGGGGAGGACTTGGG 60.691 65.000 0.00 0.00 0.00 4.12
917 1110 1.160289 AGTAGGGGGAGGACTTGGGA 61.160 60.000 0.00 0.00 0.00 4.37
918 1111 0.691413 GTAGGGGGAGGACTTGGGAG 60.691 65.000 0.00 0.00 0.00 4.30
919 1112 1.160289 TAGGGGGAGGACTTGGGAGT 61.160 60.000 0.00 0.00 39.32 3.85
996 1189 3.438668 CCCTAGGCTTCTTATCCTCTCCA 60.439 52.174 2.05 0.00 34.02 3.86
1089 1282 1.000612 GTCGGTCCCCTTCTCCTCT 59.999 63.158 0.00 0.00 0.00 3.69
1195 1397 3.068873 GTCATCTCATCTTCCGGTAAGCT 59.931 47.826 0.00 0.00 34.97 3.74
1201 1403 2.464796 TCTTCCGGTAAGCTATCCCA 57.535 50.000 0.00 0.00 34.97 4.37
1215 1417 4.540502 AGCTATCCCAGTTCTAGGGTTTTT 59.459 41.667 0.00 0.00 46.82 1.94
1216 1418 4.640647 GCTATCCCAGTTCTAGGGTTTTTG 59.359 45.833 0.00 0.00 46.82 2.44
1217 1419 4.741928 ATCCCAGTTCTAGGGTTTTTGT 57.258 40.909 0.00 0.00 46.82 2.83
1218 1420 5.853572 ATCCCAGTTCTAGGGTTTTTGTA 57.146 39.130 0.00 0.00 46.82 2.41
1241 1443 3.478857 TTGTCTGTTCGTGTATTGGGT 57.521 42.857 0.00 0.00 0.00 4.51
1247 1449 2.614520 TGTTCGTGTATTGGGTGTTGTG 59.385 45.455 0.00 0.00 0.00 3.33
1267 1469 2.652496 CTCTAACGCTCGCTCGCC 60.652 66.667 0.00 0.00 0.00 5.54
1484 1686 1.506493 GATCGCATAGCTTGGTCCAG 58.494 55.000 0.00 0.00 0.00 3.86
1505 1707 2.036387 TCCGAGTGGTTCTGAACTTCA 58.964 47.619 19.05 7.80 36.30 3.02
1550 1752 3.913763 CCATCGTTTGTTGTGCTGTATTG 59.086 43.478 0.00 0.00 0.00 1.90
1558 1760 3.314913 TGTTGTGCTGTATTGGACTTGTG 59.685 43.478 0.00 0.00 0.00 3.33
1624 1826 2.095853 ACTTTGATGTAAGCGCGGATTG 59.904 45.455 8.83 0.00 0.00 2.67
1626 1828 0.107897 TGATGTAAGCGCGGATTGGT 60.108 50.000 8.83 0.00 0.00 3.67
1824 2031 6.816134 TTTCTGCTGCTGTGATTAAATGTA 57.184 33.333 0.00 0.00 0.00 2.29
1834 2041 6.073276 GCTGTGATTAAATGTATGCCATCGTA 60.073 38.462 0.00 0.00 31.75 3.43
1877 2084 1.621317 TGCAGGGTGATGTTTCTCGTA 59.379 47.619 0.00 0.00 0.00 3.43
2084 2292 8.641499 TGTGCAGTTTTAGTTCTTTAAAATGG 57.359 30.769 0.00 0.00 35.61 3.16
2343 2553 9.325198 GTTGAATATTTAAACCCCATTTGATCC 57.675 33.333 0.00 0.00 0.00 3.36
2398 2608 3.393278 TCTTGTAACTGCTGTTAACCCCT 59.607 43.478 16.65 0.00 39.96 4.79
2405 2615 1.423541 TGCTGTTAACCCCTGATGTGT 59.576 47.619 2.48 0.00 0.00 3.72
2418 2628 6.101332 CCCCTGATGTGTAATTTTGTGATTG 58.899 40.000 0.00 0.00 0.00 2.67
2455 2665 8.143835 ACATTTAAAATGCAAGTATATGAGGCC 58.856 33.333 0.00 0.00 0.00 5.19
2501 2711 1.884926 GCTATGCTGTCGGCCTGTC 60.885 63.158 0.00 0.00 40.92 3.51
2519 2729 4.026804 CCTGTCGCAGTATAGTTTTAAGCG 60.027 45.833 0.00 0.00 44.45 4.68
2539 2749 1.673626 GCTTTGGCAATGGGTGTCATG 60.674 52.381 14.12 0.00 42.79 3.07
2568 2778 9.313323 CATCTTTACAACTGTTACATGTAAACG 57.687 33.333 19.63 15.03 41.84 3.60
2580 2790 2.912690 TGTAAACGATCCACCACACA 57.087 45.000 0.00 0.00 0.00 3.72
2590 2800 5.242838 ACGATCCACCACACATTTTATGTTT 59.757 36.000 0.00 0.00 42.70 2.83
2623 2833 7.674348 TGATATATAGGTGTTACTCCCTTGAGG 59.326 40.741 0.00 0.00 43.29 3.86
2626 2836 3.865571 AGGTGTTACTCCCTTGAGGTTA 58.134 45.455 0.00 0.00 43.29 2.85
2641 2851 4.780815 TGAGGTTACTCCATGCCTATTTG 58.219 43.478 0.00 0.00 43.29 2.32
3018 3228 3.340814 TGGAAACTTTGCTTTGCCAAA 57.659 38.095 0.00 0.00 33.93 3.28
3041 3251 8.963130 CAAAGTTGATAGCGTTTTGAAATACAA 58.037 29.630 0.00 0.00 36.65 2.41
3049 3259 5.065988 AGCGTTTTGAAATACAACACTCAGT 59.934 36.000 0.00 0.00 37.13 3.41
3075 3285 4.556233 TCTGTTTCGTTCATCACTGTAGG 58.444 43.478 0.00 0.00 0.00 3.18
3284 3494 1.533625 TCTGTGGTAATGTTGGCTGC 58.466 50.000 0.00 0.00 0.00 5.25
3364 3663 1.909700 ACTTTGATTGGTGCGGTCAT 58.090 45.000 0.00 0.00 0.00 3.06
3678 4101 1.614996 CACCCTGGTATGTTTGTGCA 58.385 50.000 0.00 0.00 0.00 4.57
3791 4214 9.631639 GAAATGTAAGTTTGTATGTTTTTGTGC 57.368 29.630 0.00 0.00 0.00 4.57
3792 4215 8.940768 AATGTAAGTTTGTATGTTTTTGTGCT 57.059 26.923 0.00 0.00 0.00 4.40
3793 4216 8.940768 ATGTAAGTTTGTATGTTTTTGTGCTT 57.059 26.923 0.00 0.00 0.00 3.91
3798 4221 8.801715 AGTTTGTATGTTTTTGTGCTTATCTG 57.198 30.769 0.00 0.00 0.00 2.90
3799 4222 8.629158 AGTTTGTATGTTTTTGTGCTTATCTGA 58.371 29.630 0.00 0.00 0.00 3.27
3800 4223 9.410556 GTTTGTATGTTTTTGTGCTTATCTGAT 57.589 29.630 0.00 0.00 0.00 2.90
3803 4226 9.665719 TGTATGTTTTTGTGCTTATCTGATAGA 57.334 29.630 0.00 0.00 0.00 1.98
3804 4227 9.922305 GTATGTTTTTGTGCTTATCTGATAGAC 57.078 33.333 0.00 0.00 0.00 2.59
3805 4228 7.977789 TGTTTTTGTGCTTATCTGATAGACA 57.022 32.000 0.00 0.83 0.00 3.41
3806 4229 8.389779 TGTTTTTGTGCTTATCTGATAGACAA 57.610 30.769 11.73 11.73 0.00 3.18
3807 4230 8.289618 TGTTTTTGTGCTTATCTGATAGACAAC 58.710 33.333 13.89 8.14 0.00 3.32
3808 4231 7.977789 TTTTGTGCTTATCTGATAGACAACA 57.022 32.000 13.89 8.46 0.00 3.33
3809 4232 7.977789 TTTGTGCTTATCTGATAGACAACAA 57.022 32.000 13.89 12.21 0.00 2.83
3810 4233 8.565896 TTTGTGCTTATCTGATAGACAACAAT 57.434 30.769 13.89 0.00 0.00 2.71
3811 4234 7.543947 TGTGCTTATCTGATAGACAACAATG 57.456 36.000 0.00 0.00 0.00 2.82
3812 4235 6.037500 TGTGCTTATCTGATAGACAACAATGC 59.962 38.462 0.00 0.00 0.00 3.56
3813 4236 6.037500 GTGCTTATCTGATAGACAACAATGCA 59.962 38.462 0.00 0.00 0.00 3.96
3814 4237 6.037500 TGCTTATCTGATAGACAACAATGCAC 59.962 38.462 0.00 0.00 0.00 4.57
3815 4238 6.512415 GCTTATCTGATAGACAACAATGCACC 60.512 42.308 0.00 0.00 0.00 5.01
3816 4239 4.284829 TCTGATAGACAACAATGCACCA 57.715 40.909 0.00 0.00 0.00 4.17
3817 4240 4.002982 TCTGATAGACAACAATGCACCAC 58.997 43.478 0.00 0.00 0.00 4.16
3818 4241 4.005650 CTGATAGACAACAATGCACCACT 58.994 43.478 0.00 0.00 0.00 4.00
3819 4242 4.397420 TGATAGACAACAATGCACCACTT 58.603 39.130 0.00 0.00 0.00 3.16
3820 4243 4.216042 TGATAGACAACAATGCACCACTTG 59.784 41.667 0.00 0.00 0.00 3.16
3821 4244 2.378038 AGACAACAATGCACCACTTGT 58.622 42.857 0.00 0.00 37.19 3.16
3822 4245 2.760092 AGACAACAATGCACCACTTGTT 59.240 40.909 9.76 9.76 44.23 2.83
3906 4330 7.756614 AGAGGGTAAGGTAAATTCTGACTTTT 58.243 34.615 0.00 0.00 0.00 2.27
3994 4418 1.896220 TTCTGCAGCCACTTCGAAAT 58.104 45.000 9.47 0.00 0.00 2.17
4097 4521 8.094548 TGTGAGCACTATAGTATTTGTTGAAGT 58.905 33.333 4.74 0.00 0.00 3.01
4476 4973 4.866508 TTTACTGTCGATCTGAAGTGGT 57.133 40.909 0.00 0.00 0.00 4.16
4575 5072 7.653767 AGTATGTTAAAGTAACTGCTGTGTC 57.346 36.000 0.00 0.00 39.38 3.67
4932 5432 0.974010 TGGACCGTCTACACCATCCC 60.974 60.000 0.00 0.00 0.00 3.85
5060 5574 1.228367 CCACCCTTTGCTGCTCTGT 60.228 57.895 0.00 0.00 0.00 3.41
5061 5575 1.521450 CCACCCTTTGCTGCTCTGTG 61.521 60.000 0.00 1.69 0.00 3.66
5062 5576 0.535780 CACCCTTTGCTGCTCTGTGA 60.536 55.000 0.00 0.00 0.00 3.58
5063 5577 0.403271 ACCCTTTGCTGCTCTGTGAT 59.597 50.000 0.00 0.00 0.00 3.06
5064 5578 1.202976 ACCCTTTGCTGCTCTGTGATT 60.203 47.619 0.00 0.00 0.00 2.57
5065 5579 1.201647 CCCTTTGCTGCTCTGTGATTG 59.798 52.381 0.00 0.00 0.00 2.67
5066 5580 1.201647 CCTTTGCTGCTCTGTGATTGG 59.798 52.381 0.00 0.00 0.00 3.16
5067 5581 1.884579 CTTTGCTGCTCTGTGATTGGT 59.115 47.619 0.00 0.00 0.00 3.67
5068 5582 1.985473 TTGCTGCTCTGTGATTGGTT 58.015 45.000 0.00 0.00 0.00 3.67
5069 5583 1.527034 TGCTGCTCTGTGATTGGTTC 58.473 50.000 0.00 0.00 0.00 3.62
5070 5584 1.072806 TGCTGCTCTGTGATTGGTTCT 59.927 47.619 0.00 0.00 0.00 3.01
5071 5585 2.157738 GCTGCTCTGTGATTGGTTCTT 58.842 47.619 0.00 0.00 0.00 2.52
5072 5586 2.555757 GCTGCTCTGTGATTGGTTCTTT 59.444 45.455 0.00 0.00 0.00 2.52
5073 5587 3.005155 GCTGCTCTGTGATTGGTTCTTTT 59.995 43.478 0.00 0.00 0.00 2.27
5074 5588 4.500375 GCTGCTCTGTGATTGGTTCTTTTT 60.500 41.667 0.00 0.00 0.00 1.94
5220 6031 1.396996 CCCGACGTTTGATTGGACATC 59.603 52.381 0.00 0.00 0.00 3.06
5230 6041 3.688235 TGATTGGACATCTGCACATGAA 58.312 40.909 9.11 0.00 0.00 2.57
5342 6153 5.220700 CCTCCGAAGCTACATAGTCGATATC 60.221 48.000 4.84 0.00 35.54 1.63
5424 6235 3.399879 GCCGTGCGAATTGATTGTT 57.600 47.368 0.00 0.00 0.00 2.83
5450 6261 3.757270 TGTCGGTATGGTTGGACATTTT 58.243 40.909 0.00 0.00 34.71 1.82
5451 6262 4.145807 TGTCGGTATGGTTGGACATTTTT 58.854 39.130 0.00 0.00 34.71 1.94
5477 6289 1.288633 TCAAATGATGGCCCAGGTGAT 59.711 47.619 0.00 0.00 0.00 3.06
5491 6303 3.638627 CCAGGTGATACATGTCTGAGCTA 59.361 47.826 0.00 0.00 0.00 3.32
5492 6304 4.500545 CCAGGTGATACATGTCTGAGCTAC 60.501 50.000 0.00 0.00 0.00 3.58
5512 6324 5.863935 GCTACAGGCAAAATAAGGTTTTCTG 59.136 40.000 0.00 0.00 41.35 3.02
5518 6330 6.045955 GGCAAAATAAGGTTTTCTGTTGACA 58.954 36.000 0.00 0.00 0.00 3.58
5551 6363 4.097892 AGGACAAATTTGTATCCATTCGCC 59.902 41.667 23.33 15.96 42.43 5.54
5560 6372 3.823873 TGTATCCATTCGCCAGTGTTTTT 59.176 39.130 0.00 0.00 0.00 1.94
5561 6373 2.791383 TCCATTCGCCAGTGTTTTTG 57.209 45.000 0.00 0.00 0.00 2.44
5562 6374 2.028130 TCCATTCGCCAGTGTTTTTGT 58.972 42.857 0.00 0.00 0.00 2.83
5563 6375 2.428890 TCCATTCGCCAGTGTTTTTGTT 59.571 40.909 0.00 0.00 0.00 2.83
5564 6376 3.118956 TCCATTCGCCAGTGTTTTTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
5565 6377 3.620821 CCATTCGCCAGTGTTTTTGTTTT 59.379 39.130 0.00 0.00 0.00 2.43
5578 6390 8.421002 AGTGTTTTTGTTTTCTTATGTATGCCT 58.579 29.630 0.00 0.00 0.00 4.75
5589 6401 9.990360 TTTCTTATGTATGCCTTGTATCGATTA 57.010 29.630 1.71 0.00 0.00 1.75
5590 6402 9.639601 TTCTTATGTATGCCTTGTATCGATTAG 57.360 33.333 1.71 0.00 0.00 1.73
5639 6456 4.443034 GGAAGGTTCGCTAATGTATGACCT 60.443 45.833 0.00 0.00 0.00 3.85
5641 6458 3.451178 AGGTTCGCTAATGTATGACCTGT 59.549 43.478 0.00 0.00 0.00 4.00
5662 6479 6.183360 CCTGTAGATGTGATTTTGTACTGCAG 60.183 42.308 13.48 13.48 36.76 4.41
5693 6514 3.932710 ACGCAATTCTATATATGCACCCG 59.067 43.478 6.81 0.00 38.69 5.28
5694 6515 3.309682 CGCAATTCTATATATGCACCCGG 59.690 47.826 0.00 0.00 38.69 5.73
5703 6524 2.799126 TATGCACCCGGAAGTGAAAT 57.201 45.000 14.27 9.13 40.34 2.17
5704 6525 2.799126 ATGCACCCGGAAGTGAAATA 57.201 45.000 14.27 0.00 40.34 1.40
5705 6526 2.570415 TGCACCCGGAAGTGAAATAA 57.430 45.000 14.27 0.00 40.34 1.40
5706 6527 3.080300 TGCACCCGGAAGTGAAATAAT 57.920 42.857 14.27 0.00 40.34 1.28
5707 6528 4.223556 TGCACCCGGAAGTGAAATAATA 57.776 40.909 14.27 0.00 40.34 0.98
5708 6529 4.787551 TGCACCCGGAAGTGAAATAATAT 58.212 39.130 14.27 0.00 40.34 1.28
5709 6530 5.197451 TGCACCCGGAAGTGAAATAATATT 58.803 37.500 14.27 0.00 40.34 1.28
5770 6591 1.439679 GTGCAGTTCCCTTCGTTAGG 58.560 55.000 0.00 0.12 44.33 2.69
5771 6592 0.321298 TGCAGTTCCCTTCGTTAGGC 60.321 55.000 1.43 0.00 43.27 3.93
5772 6593 0.036294 GCAGTTCCCTTCGTTAGGCT 60.036 55.000 0.00 0.00 43.27 4.58
5774 6595 2.889852 CAGTTCCCTTCGTTAGGCTAC 58.110 52.381 0.00 2.33 43.27 3.58
5775 6596 2.496470 CAGTTCCCTTCGTTAGGCTACT 59.504 50.000 0.00 4.17 43.27 2.57
5777 6598 3.056035 AGTTCCCTTCGTTAGGCTACTTG 60.056 47.826 0.00 0.00 43.27 3.16
5778 6599 1.206371 TCCCTTCGTTAGGCTACTTGC 59.794 52.381 0.00 0.00 43.27 4.01
5779 6600 1.207329 CCCTTCGTTAGGCTACTTGCT 59.793 52.381 0.00 0.00 43.27 3.91
5780 6601 2.541556 CCTTCGTTAGGCTACTTGCTC 58.458 52.381 0.00 0.00 42.39 4.26
5781 6602 2.166664 CCTTCGTTAGGCTACTTGCTCT 59.833 50.000 0.00 0.00 42.39 4.09
5782 6603 3.440228 CTTCGTTAGGCTACTTGCTCTC 58.560 50.000 0.00 0.00 42.39 3.20
5783 6604 1.400846 TCGTTAGGCTACTTGCTCTCG 59.599 52.381 0.00 0.00 42.39 4.04
5784 6605 1.132643 CGTTAGGCTACTTGCTCTCGT 59.867 52.381 0.00 0.00 42.39 4.18
5785 6606 2.791849 CGTTAGGCTACTTGCTCTCGTC 60.792 54.545 0.00 0.00 42.39 4.20
5786 6607 1.015109 TAGGCTACTTGCTCTCGTCG 58.985 55.000 0.00 0.00 42.39 5.12
5787 6608 1.874466 GGCTACTTGCTCTCGTCGC 60.874 63.158 0.00 0.00 42.39 5.19
5788 6609 1.874466 GCTACTTGCTCTCGTCGCC 60.874 63.158 0.00 0.00 38.95 5.54
5789 6610 1.506718 CTACTTGCTCTCGTCGCCA 59.493 57.895 0.00 0.00 0.00 5.69
5790 6611 0.109272 CTACTTGCTCTCGTCGCCAA 60.109 55.000 0.00 0.00 0.00 4.52
5791 6612 0.388134 TACTTGCTCTCGTCGCCAAC 60.388 55.000 0.00 0.00 0.00 3.77
5792 6613 2.357034 TTGCTCTCGTCGCCAACC 60.357 61.111 0.00 0.00 0.00 3.77
5793 6614 2.771763 CTTGCTCTCGTCGCCAACCT 62.772 60.000 0.00 0.00 0.00 3.50
5794 6615 2.811317 GCTCTCGTCGCCAACCTG 60.811 66.667 0.00 0.00 0.00 4.00
5795 6616 2.811317 CTCTCGTCGCCAACCTGC 60.811 66.667 0.00 0.00 0.00 4.85
5796 6617 4.373116 TCTCGTCGCCAACCTGCC 62.373 66.667 0.00 0.00 0.00 4.85
5810 6631 4.577677 TGCCGGCCTTGCTGTCAA 62.578 61.111 26.77 0.00 32.22 3.18
5811 6632 4.043200 GCCGGCCTTGCTGTCAAC 62.043 66.667 18.11 0.00 32.22 3.18
5812 6633 3.365265 CCGGCCTTGCTGTCAACC 61.365 66.667 0.00 0.00 32.22 3.77
5813 6634 3.365265 CGGCCTTGCTGTCAACCC 61.365 66.667 0.00 0.00 0.00 4.11
5814 6635 2.991540 GGCCTTGCTGTCAACCCC 60.992 66.667 0.00 0.00 0.00 4.95
5815 6636 3.365265 GCCTTGCTGTCAACCCCG 61.365 66.667 0.00 0.00 0.00 5.73
5816 6637 3.365265 CCTTGCTGTCAACCCCGC 61.365 66.667 0.00 0.00 0.00 6.13
5817 6638 2.281761 CTTGCTGTCAACCCCGCT 60.282 61.111 0.00 0.00 0.00 5.52
5818 6639 1.898574 CTTGCTGTCAACCCCGCTT 60.899 57.895 0.00 0.00 0.00 4.68
5819 6640 2.133742 CTTGCTGTCAACCCCGCTTG 62.134 60.000 0.00 0.00 0.00 4.01
5820 6641 2.281484 GCTGTCAACCCCGCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
5821 6642 1.896660 GCTGTCAACCCCGCTTGAA 60.897 57.895 0.00 0.00 31.90 2.69
5822 6643 1.949257 CTGTCAACCCCGCTTGAAC 59.051 57.895 0.00 0.00 31.90 3.18
5823 6644 1.515521 CTGTCAACCCCGCTTGAACC 61.516 60.000 0.00 0.00 31.90 3.62
5824 6645 1.228154 GTCAACCCCGCTTGAACCT 60.228 57.895 0.00 0.00 31.90 3.50
5825 6646 0.822121 GTCAACCCCGCTTGAACCTT 60.822 55.000 0.00 0.00 31.90 3.50
5826 6647 0.821711 TCAACCCCGCTTGAACCTTG 60.822 55.000 0.00 0.00 0.00 3.61
5827 6648 1.530655 AACCCCGCTTGAACCTTGG 60.531 57.895 0.00 0.00 0.00 3.61
5828 6649 3.373565 CCCCGCTTGAACCTTGGC 61.374 66.667 0.00 0.00 0.00 4.52
5829 6650 3.737172 CCCGCTTGAACCTTGGCG 61.737 66.667 0.00 0.00 45.97 5.69
5831 6652 3.737172 CGCTTGAACCTTGGCGGG 61.737 66.667 0.00 0.00 43.25 6.13
5832 6653 2.282180 GCTTGAACCTTGGCGGGA 60.282 61.111 3.33 0.00 36.97 5.14
5833 6654 2.626780 GCTTGAACCTTGGCGGGAC 61.627 63.158 3.33 0.00 36.97 4.46
5834 6655 1.073199 CTTGAACCTTGGCGGGACT 59.927 57.895 3.33 0.00 36.97 3.85
5835 6656 1.228124 TTGAACCTTGGCGGGACTG 60.228 57.895 3.33 0.00 36.97 3.51
5836 6657 1.701031 TTGAACCTTGGCGGGACTGA 61.701 55.000 3.33 0.00 36.97 3.41
5837 6658 1.072505 GAACCTTGGCGGGACTGAA 59.927 57.895 3.33 0.00 36.97 3.02
5838 6659 0.955919 GAACCTTGGCGGGACTGAAG 60.956 60.000 3.33 0.00 36.97 3.02
5839 6660 2.045926 CCTTGGCGGGACTGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
5840 6661 2.045926 CTTGGCGGGACTGAAGGG 60.046 66.667 0.00 0.00 0.00 3.95
5841 6662 2.852075 TTGGCGGGACTGAAGGGT 60.852 61.111 0.00 0.00 0.00 4.34
5842 6663 3.190738 TTGGCGGGACTGAAGGGTG 62.191 63.158 0.00 0.00 0.00 4.61
5843 6664 3.637273 GGCGGGACTGAAGGGTGT 61.637 66.667 0.00 0.00 0.00 4.16
5844 6665 2.358737 GCGGGACTGAAGGGTGTG 60.359 66.667 0.00 0.00 0.00 3.82
5845 6666 2.879233 GCGGGACTGAAGGGTGTGA 61.879 63.158 0.00 0.00 0.00 3.58
5846 6667 1.983224 CGGGACTGAAGGGTGTGAT 59.017 57.895 0.00 0.00 0.00 3.06
5847 6668 0.108138 CGGGACTGAAGGGTGTGATC 60.108 60.000 0.00 0.00 0.00 2.92
5848 6669 0.253327 GGGACTGAAGGGTGTGATCC 59.747 60.000 0.00 0.00 0.00 3.36
5849 6670 1.280457 GGACTGAAGGGTGTGATCCT 58.720 55.000 0.00 0.00 35.88 3.24
5850 6671 1.065854 GGACTGAAGGGTGTGATCCTG 60.066 57.143 0.00 0.00 34.34 3.86
5851 6672 0.987294 ACTGAAGGGTGTGATCCTGG 59.013 55.000 0.00 0.00 34.34 4.45
5852 6673 1.279496 CTGAAGGGTGTGATCCTGGA 58.721 55.000 0.00 0.00 34.34 3.86
5853 6674 1.842562 CTGAAGGGTGTGATCCTGGAT 59.157 52.381 9.42 9.42 34.34 3.41
5854 6675 1.839994 TGAAGGGTGTGATCCTGGATC 59.160 52.381 26.36 26.36 39.31 3.36
5855 6676 0.833287 AAGGGTGTGATCCTGGATCG 59.167 55.000 26.93 0.00 41.51 3.69
5856 6677 0.325671 AGGGTGTGATCCTGGATCGT 60.326 55.000 26.93 6.91 41.51 3.73
5857 6678 0.541863 GGGTGTGATCCTGGATCGTT 59.458 55.000 26.93 0.00 41.51 3.85
5858 6679 1.656652 GGTGTGATCCTGGATCGTTG 58.343 55.000 26.93 0.00 41.51 4.10
5859 6680 1.656652 GTGTGATCCTGGATCGTTGG 58.343 55.000 26.93 0.00 41.51 3.77
5860 6681 1.066143 GTGTGATCCTGGATCGTTGGT 60.066 52.381 26.93 0.00 41.51 3.67
5861 6682 2.167693 GTGTGATCCTGGATCGTTGGTA 59.832 50.000 26.93 9.67 41.51 3.25
5862 6683 2.430694 TGTGATCCTGGATCGTTGGTAG 59.569 50.000 26.93 0.00 41.51 3.18
5863 6684 2.039418 TGATCCTGGATCGTTGGTAGG 58.961 52.381 26.93 0.00 41.51 3.18
5864 6685 1.344763 GATCCTGGATCGTTGGTAGGG 59.655 57.143 20.20 0.00 29.12 3.53
5865 6686 0.337082 TCCTGGATCGTTGGTAGGGA 59.663 55.000 0.00 0.00 0.00 4.20
5866 6687 1.062428 TCCTGGATCGTTGGTAGGGAT 60.062 52.381 0.00 0.00 0.00 3.85
5867 6688 1.070758 CCTGGATCGTTGGTAGGGATG 59.929 57.143 0.00 0.00 0.00 3.51
5868 6689 1.070758 CTGGATCGTTGGTAGGGATGG 59.929 57.143 0.00 0.00 0.00 3.51
5869 6690 0.250338 GGATCGTTGGTAGGGATGGC 60.250 60.000 0.00 0.00 0.00 4.40
5870 6691 0.468226 GATCGTTGGTAGGGATGGCA 59.532 55.000 0.00 0.00 0.00 4.92
5871 6692 0.916086 ATCGTTGGTAGGGATGGCAA 59.084 50.000 0.00 0.00 0.00 4.52
5872 6693 0.916086 TCGTTGGTAGGGATGGCAAT 59.084 50.000 0.00 0.00 0.00 3.56
5873 6694 1.024271 CGTTGGTAGGGATGGCAATG 58.976 55.000 0.00 0.00 0.00 2.82
5874 6695 1.402787 GTTGGTAGGGATGGCAATGG 58.597 55.000 0.00 0.00 0.00 3.16
5875 6696 1.064017 GTTGGTAGGGATGGCAATGGA 60.064 52.381 0.00 0.00 0.00 3.41
5876 6697 1.533187 TGGTAGGGATGGCAATGGAT 58.467 50.000 0.00 0.00 0.00 3.41
5877 6698 2.712384 TGGTAGGGATGGCAATGGATA 58.288 47.619 0.00 0.00 0.00 2.59
5878 6699 3.059853 TGGTAGGGATGGCAATGGATAA 58.940 45.455 0.00 0.00 0.00 1.75
5879 6700 3.465210 TGGTAGGGATGGCAATGGATAAA 59.535 43.478 0.00 0.00 0.00 1.40
5880 6701 4.082125 GGTAGGGATGGCAATGGATAAAG 58.918 47.826 0.00 0.00 0.00 1.85
5881 6702 3.979501 AGGGATGGCAATGGATAAAGT 57.020 42.857 0.00 0.00 0.00 2.66
5882 6703 5.222048 GGTAGGGATGGCAATGGATAAAGTA 60.222 44.000 0.00 0.00 0.00 2.24
5883 6704 5.605540 AGGGATGGCAATGGATAAAGTAT 57.394 39.130 0.00 0.00 0.00 2.12
5884 6705 5.327732 AGGGATGGCAATGGATAAAGTATG 58.672 41.667 0.00 0.00 0.00 2.39
5885 6706 4.463891 GGGATGGCAATGGATAAAGTATGG 59.536 45.833 0.00 0.00 0.00 2.74
5886 6707 4.463891 GGATGGCAATGGATAAAGTATGGG 59.536 45.833 0.00 0.00 0.00 4.00
5887 6708 4.534647 TGGCAATGGATAAAGTATGGGT 57.465 40.909 0.00 0.00 0.00 4.51
5888 6709 4.469657 TGGCAATGGATAAAGTATGGGTC 58.530 43.478 0.00 0.00 0.00 4.46
5889 6710 3.502211 GGCAATGGATAAAGTATGGGTCG 59.498 47.826 0.00 0.00 0.00 4.79
5890 6711 3.502211 GCAATGGATAAAGTATGGGTCGG 59.498 47.826 0.00 0.00 0.00 4.79
5891 6712 4.714632 CAATGGATAAAGTATGGGTCGGT 58.285 43.478 0.00 0.00 0.00 4.69
5892 6713 5.743714 GCAATGGATAAAGTATGGGTCGGTA 60.744 44.000 0.00 0.00 0.00 4.02
5893 6714 4.942761 TGGATAAAGTATGGGTCGGTAC 57.057 45.455 0.00 0.00 0.00 3.34
5894 6715 4.288398 TGGATAAAGTATGGGTCGGTACA 58.712 43.478 0.00 0.00 0.00 2.90
5895 6716 4.715792 TGGATAAAGTATGGGTCGGTACAA 59.284 41.667 0.00 0.00 0.00 2.41
5896 6717 5.367352 TGGATAAAGTATGGGTCGGTACAAT 59.633 40.000 0.00 0.00 0.00 2.71
5897 6718 5.930569 GGATAAAGTATGGGTCGGTACAATC 59.069 44.000 0.00 0.00 0.00 2.67
5898 6719 6.239515 GGATAAAGTATGGGTCGGTACAATCT 60.240 42.308 0.00 0.00 0.00 2.40
5899 6720 4.667519 AAGTATGGGTCGGTACAATCTC 57.332 45.455 0.00 0.00 0.00 2.75
5900 6721 2.963782 AGTATGGGTCGGTACAATCTCC 59.036 50.000 0.00 0.00 0.00 3.71
5901 6722 2.176247 ATGGGTCGGTACAATCTCCT 57.824 50.000 0.00 0.00 0.00 3.69
5902 6723 1.946984 TGGGTCGGTACAATCTCCTT 58.053 50.000 0.00 0.00 0.00 3.36
5903 6724 1.829222 TGGGTCGGTACAATCTCCTTC 59.171 52.381 0.00 0.00 0.00 3.46
5904 6725 2.108970 GGGTCGGTACAATCTCCTTCT 58.891 52.381 0.00 0.00 0.00 2.85
5905 6726 2.159085 GGGTCGGTACAATCTCCTTCTG 60.159 54.545 0.00 0.00 0.00 3.02
5906 6727 2.159085 GGTCGGTACAATCTCCTTCTGG 60.159 54.545 0.00 0.00 0.00 3.86
5907 6728 1.480954 TCGGTACAATCTCCTTCTGGC 59.519 52.381 0.00 0.00 0.00 4.85
5908 6729 1.473434 CGGTACAATCTCCTTCTGGCC 60.473 57.143 0.00 0.00 0.00 5.36
5909 6730 1.559682 GGTACAATCTCCTTCTGGCCA 59.440 52.381 4.71 4.71 0.00 5.36
5910 6731 2.026262 GGTACAATCTCCTTCTGGCCAA 60.026 50.000 7.01 0.00 0.00 4.52
5911 6732 2.978156 ACAATCTCCTTCTGGCCAAA 57.022 45.000 7.01 3.41 0.00 3.28
5912 6733 2.519013 ACAATCTCCTTCTGGCCAAAC 58.481 47.619 7.01 0.00 0.00 2.93
5913 6734 2.108952 ACAATCTCCTTCTGGCCAAACT 59.891 45.455 7.01 0.00 0.00 2.66
5914 6735 2.751806 CAATCTCCTTCTGGCCAAACTC 59.248 50.000 7.01 0.00 0.00 3.01
5915 6736 1.434188 TCTCCTTCTGGCCAAACTCA 58.566 50.000 7.01 0.00 0.00 3.41
5916 6737 1.988107 TCTCCTTCTGGCCAAACTCAT 59.012 47.619 7.01 0.00 0.00 2.90
5917 6738 3.181329 TCTCCTTCTGGCCAAACTCATA 58.819 45.455 7.01 0.00 0.00 2.15
5918 6739 3.055094 TCTCCTTCTGGCCAAACTCATAC 60.055 47.826 7.01 0.00 0.00 2.39
5919 6740 2.026262 TCCTTCTGGCCAAACTCATACC 60.026 50.000 7.01 0.00 0.00 2.73
5920 6741 2.369394 CTTCTGGCCAAACTCATACCC 58.631 52.381 7.01 0.00 0.00 3.69
5921 6742 1.367346 TCTGGCCAAACTCATACCCA 58.633 50.000 7.01 0.00 0.00 4.51
5922 6743 1.004277 TCTGGCCAAACTCATACCCAC 59.996 52.381 7.01 0.00 0.00 4.61
5923 6744 0.774276 TGGCCAAACTCATACCCACA 59.226 50.000 0.61 0.00 0.00 4.17
5924 6745 1.145945 TGGCCAAACTCATACCCACAA 59.854 47.619 0.61 0.00 0.00 3.33
5925 6746 2.243810 GGCCAAACTCATACCCACAAA 58.756 47.619 0.00 0.00 0.00 2.83
5926 6747 2.630580 GGCCAAACTCATACCCACAAAA 59.369 45.455 0.00 0.00 0.00 2.44
5927 6748 3.070302 GGCCAAACTCATACCCACAAAAA 59.930 43.478 0.00 0.00 0.00 1.94
5928 6749 4.055360 GCCAAACTCATACCCACAAAAAC 58.945 43.478 0.00 0.00 0.00 2.43
5929 6750 4.202212 GCCAAACTCATACCCACAAAAACT 60.202 41.667 0.00 0.00 0.00 2.66
5930 6751 5.528870 CCAAACTCATACCCACAAAAACTC 58.471 41.667 0.00 0.00 0.00 3.01
5931 6752 5.301805 CCAAACTCATACCCACAAAAACTCT 59.698 40.000 0.00 0.00 0.00 3.24
5932 6753 6.488683 CCAAACTCATACCCACAAAAACTCTA 59.511 38.462 0.00 0.00 0.00 2.43
5933 6754 7.176690 CCAAACTCATACCCACAAAAACTCTAT 59.823 37.037 0.00 0.00 0.00 1.98
5934 6755 9.226606 CAAACTCATACCCACAAAAACTCTATA 57.773 33.333 0.00 0.00 0.00 1.31
5935 6756 8.788325 AACTCATACCCACAAAAACTCTATAC 57.212 34.615 0.00 0.00 0.00 1.47
5936 6757 8.147244 ACTCATACCCACAAAAACTCTATACT 57.853 34.615 0.00 0.00 0.00 2.12
5937 6758 8.258708 ACTCATACCCACAAAAACTCTATACTC 58.741 37.037 0.00 0.00 0.00 2.59
5938 6759 8.141298 TCATACCCACAAAAACTCTATACTCA 57.859 34.615 0.00 0.00 0.00 3.41
5939 6760 8.768397 TCATACCCACAAAAACTCTATACTCAT 58.232 33.333 0.00 0.00 0.00 2.90
5940 6761 9.046296 CATACCCACAAAAACTCTATACTCATC 57.954 37.037 0.00 0.00 0.00 2.92
5941 6762 6.415573 ACCCACAAAAACTCTATACTCATCC 58.584 40.000 0.00 0.00 0.00 3.51
5942 6763 6.012858 ACCCACAAAAACTCTATACTCATCCA 60.013 38.462 0.00 0.00 0.00 3.41
5943 6764 7.056635 CCCACAAAAACTCTATACTCATCCAT 58.943 38.462 0.00 0.00 0.00 3.41
5944 6765 7.557719 CCCACAAAAACTCTATACTCATCCATT 59.442 37.037 0.00 0.00 0.00 3.16
5945 6766 8.960591 CCACAAAAACTCTATACTCATCCATTT 58.039 33.333 0.00 0.00 0.00 2.32
5951 6772 9.739276 AAACTCTATACTCATCCATTTTCAACA 57.261 29.630 0.00 0.00 0.00 3.33
5952 6773 9.911788 AACTCTATACTCATCCATTTTCAACAT 57.088 29.630 0.00 0.00 0.00 2.71
5953 6774 9.911788 ACTCTATACTCATCCATTTTCAACATT 57.088 29.630 0.00 0.00 0.00 2.71
5955 6776 9.904198 TCTATACTCATCCATTTTCAACATTCA 57.096 29.630 0.00 0.00 0.00 2.57
5958 6779 6.636705 ACTCATCCATTTTCAACATTCATGG 58.363 36.000 0.00 0.00 36.48 3.66
5959 6780 5.979993 TCATCCATTTTCAACATTCATGGG 58.020 37.500 0.00 0.00 35.93 4.00
5960 6781 4.205065 TCCATTTTCAACATTCATGGGC 57.795 40.909 0.00 0.00 35.93 5.36
5961 6782 3.581770 TCCATTTTCAACATTCATGGGCA 59.418 39.130 0.00 0.00 35.93 5.36
5962 6783 4.225492 TCCATTTTCAACATTCATGGGCAT 59.775 37.500 0.00 0.00 35.93 4.40
5963 6784 5.424573 TCCATTTTCAACATTCATGGGCATA 59.575 36.000 0.00 0.00 35.93 3.14
5964 6785 6.070366 TCCATTTTCAACATTCATGGGCATAA 60.070 34.615 0.00 0.00 35.93 1.90
5965 6786 6.598457 CCATTTTCAACATTCATGGGCATAAA 59.402 34.615 0.00 0.00 32.18 1.40
5966 6787 7.283580 CCATTTTCAACATTCATGGGCATAAAT 59.716 33.333 0.00 0.00 32.18 1.40
5967 6788 8.679100 CATTTTCAACATTCATGGGCATAAATT 58.321 29.630 0.00 0.00 0.00 1.82
5968 6789 7.612668 TTTCAACATTCATGGGCATAAATTG 57.387 32.000 0.00 0.00 0.00 2.32
5969 6790 6.541934 TCAACATTCATGGGCATAAATTGA 57.458 33.333 0.00 0.00 0.00 2.57
5970 6791 6.339730 TCAACATTCATGGGCATAAATTGAC 58.660 36.000 0.00 0.00 0.00 3.18
5971 6792 5.936187 ACATTCATGGGCATAAATTGACA 57.064 34.783 0.00 0.00 33.62 3.58
5972 6793 5.663456 ACATTCATGGGCATAAATTGACAC 58.337 37.500 0.00 0.00 33.62 3.67
5973 6794 4.368874 TTCATGGGCATAAATTGACACG 57.631 40.909 0.00 0.00 33.62 4.49
5974 6795 2.098934 TCATGGGCATAAATTGACACGC 59.901 45.455 0.00 0.00 33.62 5.34
5975 6796 1.539157 TGGGCATAAATTGACACGCA 58.461 45.000 0.00 0.00 33.62 5.24
5976 6797 2.098614 TGGGCATAAATTGACACGCAT 58.901 42.857 0.00 0.00 33.62 4.73
5977 6798 3.282885 TGGGCATAAATTGACACGCATA 58.717 40.909 0.00 0.00 33.62 3.14
5978 6799 3.888323 TGGGCATAAATTGACACGCATAT 59.112 39.130 0.00 0.00 33.62 1.78
5979 6800 4.023279 TGGGCATAAATTGACACGCATATC 60.023 41.667 0.00 0.00 33.62 1.63
5980 6801 4.475944 GGCATAAATTGACACGCATATCC 58.524 43.478 0.00 0.00 31.51 2.59
5981 6802 4.023279 GGCATAAATTGACACGCATATCCA 60.023 41.667 0.00 0.00 31.51 3.41
5982 6803 5.335897 GGCATAAATTGACACGCATATCCAT 60.336 40.000 0.00 0.00 31.51 3.41
5983 6804 5.796935 GCATAAATTGACACGCATATCCATC 59.203 40.000 0.00 0.00 0.00 3.51
5984 6805 4.472691 AAATTGACACGCATATCCATCG 57.527 40.909 0.00 0.00 0.00 3.84
5985 6806 1.864565 TTGACACGCATATCCATCGG 58.135 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.192852 ACTCTGTCATCATCTTCTAATTGGT 57.807 36.000 0.00 0.00 0.00 3.67
99 101 6.170506 ACTACTGACTTGTTGTGTTTCTTGA 58.829 36.000 0.00 0.00 0.00 3.02
102 104 7.328737 ACTTACTACTGACTTGTTGTGTTTCT 58.671 34.615 0.00 0.00 0.00 2.52
110 112 9.469097 AGATATCTGACTTACTACTGACTTGTT 57.531 33.333 3.89 0.00 0.00 2.83
139 282 5.398416 GCGTGTTGTTTTAGGATTTCAGTTC 59.602 40.000 0.00 0.00 0.00 3.01
150 293 1.533731 ACCGATGGCGTGTTGTTTTAG 59.466 47.619 0.00 0.00 35.23 1.85
161 318 2.128035 GATAAGAGTGAACCGATGGCG 58.872 52.381 0.00 0.00 37.24 5.69
236 393 3.646534 TCAGATGATGAGCCTAGTTCCA 58.353 45.455 0.00 0.00 32.77 3.53
237 394 4.679373 TTCAGATGATGAGCCTAGTTCC 57.321 45.455 0.00 0.00 39.68 3.62
290 447 0.824109 TCGATGCCTCTTAGTGTGGG 59.176 55.000 0.00 0.00 0.00 4.61
300 457 1.945387 TCATGAGCTTTCGATGCCTC 58.055 50.000 7.21 4.05 0.00 4.70
309 466 3.181451 TGTCCACTCTGTTCATGAGCTTT 60.181 43.478 11.09 0.00 35.12 3.51
313 470 2.301296 AGGTGTCCACTCTGTTCATGAG 59.699 50.000 0.00 0.00 37.55 2.90
327 484 4.019591 AGGTTTGTTAGGTATGAGGTGTCC 60.020 45.833 0.00 0.00 0.00 4.02
328 485 5.161943 AGGTTTGTTAGGTATGAGGTGTC 57.838 43.478 0.00 0.00 0.00 3.67
411 575 2.606961 TTACAGTGCAGTGCAGCGC 61.607 57.895 20.42 7.12 40.08 5.92
412 576 1.205064 GTTACAGTGCAGTGCAGCG 59.795 57.895 20.42 15.04 40.08 5.18
413 577 1.205064 CGTTACAGTGCAGTGCAGC 59.795 57.895 20.42 13.52 40.08 5.25
414 578 1.205064 GCGTTACAGTGCAGTGCAG 59.795 57.895 20.42 10.70 40.08 4.41
415 579 2.594048 CGCGTTACAGTGCAGTGCA 61.594 57.895 21.57 15.37 35.60 4.57
416 580 2.170985 CGCGTTACAGTGCAGTGC 59.829 61.111 21.57 8.58 0.00 4.40
417 581 2.170985 GCGCGTTACAGTGCAGTG 59.829 61.111 20.11 20.11 46.02 3.66
831 1022 3.110358 CGTAGTTGATTACCAATCGCGA 58.890 45.455 13.09 13.09 40.84 5.87
844 1035 0.523968 GCGATGGCGTACGTAGTTGA 60.524 55.000 17.90 0.00 37.35 3.18
846 1037 0.171903 AAGCGATGGCGTACGTAGTT 59.828 50.000 17.90 0.00 41.81 2.24
848 1039 2.109609 TAAAGCGATGGCGTACGTAG 57.890 50.000 17.90 5.29 46.35 3.51
849 1040 2.291465 AGATAAAGCGATGGCGTACGTA 59.709 45.455 17.90 6.98 46.35 3.57
850 1041 1.066605 AGATAAAGCGATGGCGTACGT 59.933 47.619 17.90 0.00 46.35 3.57
852 1043 2.471743 GTGAGATAAAGCGATGGCGTAC 59.528 50.000 0.00 0.00 46.35 3.67
914 1107 0.322008 CTCAACTGCTCCCAACTCCC 60.322 60.000 0.00 0.00 0.00 4.30
915 1108 0.957888 GCTCAACTGCTCCCAACTCC 60.958 60.000 0.00 0.00 0.00 3.85
916 1109 0.957888 GGCTCAACTGCTCCCAACTC 60.958 60.000 0.00 0.00 0.00 3.01
917 1110 1.073897 GGCTCAACTGCTCCCAACT 59.926 57.895 0.00 0.00 0.00 3.16
918 1111 1.228245 TGGCTCAACTGCTCCCAAC 60.228 57.895 0.00 0.00 0.00 3.77
919 1112 1.073722 CTGGCTCAACTGCTCCCAA 59.926 57.895 0.00 0.00 0.00 4.12
986 1179 1.475169 CGCCATGGCTGGAGAGGATA 61.475 60.000 33.07 0.00 46.37 2.59
1201 1403 8.630037 CAGACAAAATACAAAAACCCTAGAACT 58.370 33.333 0.00 0.00 0.00 3.01
1215 1417 6.072948 CCCAATACACGAACAGACAAAATACA 60.073 38.462 0.00 0.00 0.00 2.29
1216 1418 6.072893 ACCCAATACACGAACAGACAAAATAC 60.073 38.462 0.00 0.00 0.00 1.89
1217 1419 5.998981 ACCCAATACACGAACAGACAAAATA 59.001 36.000 0.00 0.00 0.00 1.40
1218 1420 4.825085 ACCCAATACACGAACAGACAAAAT 59.175 37.500 0.00 0.00 0.00 1.82
1241 1443 1.335597 CGAGCGTTAGAGGTCACAACA 60.336 52.381 0.00 0.00 38.44 3.33
1247 1449 1.297745 CGAGCGAGCGTTAGAGGTC 60.298 63.158 0.00 0.00 35.48 3.85
1267 1469 2.666862 TGCCTACAAACACGCCGG 60.667 61.111 0.00 0.00 0.00 6.13
1465 1667 1.202580 ACTGGACCAAGCTATGCGATC 60.203 52.381 0.00 0.00 0.00 3.69
1484 1686 2.223971 TGAAGTTCAGAACCACTCGGAC 60.224 50.000 9.85 0.00 35.59 4.79
1505 1707 4.342665 GGATCGAGGAAACTGAACCTATCT 59.657 45.833 0.00 0.00 44.43 1.98
1550 1752 1.338020 CAGTTTTGAGGGCACAAGTCC 59.662 52.381 0.00 0.00 40.92 3.85
1624 1826 7.940850 ACATTATGAGCACCAATTAATACACC 58.059 34.615 0.00 0.00 0.00 4.16
1626 1828 9.283768 CCTACATTATGAGCACCAATTAATACA 57.716 33.333 0.00 0.00 0.00 2.29
1824 2031 7.448161 TCAATCTCCAATTAATTACGATGGCAT 59.552 33.333 0.00 0.00 0.00 4.40
1834 2041 8.095792 TGCAAACACATCAATCTCCAATTAATT 58.904 29.630 0.00 0.00 0.00 1.40
1877 2084 2.222445 GCACGTCTTCCACAAAACGTAT 59.778 45.455 0.00 0.00 45.67 3.06
2084 2292 5.897377 ATGTGGTTAGGCAAACATTCTAC 57.103 39.130 3.89 0.00 40.08 2.59
2228 2438 7.093322 AGATACATGCTTCAAAATCAGGTTC 57.907 36.000 0.00 0.00 0.00 3.62
2230 2440 7.318141 CAAAGATACATGCTTCAAAATCAGGT 58.682 34.615 0.00 0.00 0.00 4.00
2292 2502 4.876107 GCACTAGCATTAGGTGAAAGCTTA 59.124 41.667 0.00 0.00 41.24 3.09
2293 2503 3.691609 GCACTAGCATTAGGTGAAAGCTT 59.308 43.478 0.00 0.00 41.24 3.74
2296 2506 4.256920 ACAGCACTAGCATTAGGTGAAAG 58.743 43.478 0.00 0.00 45.49 2.62
2398 2608 7.328982 GCATGACAATCACAAAATTACACATCA 59.671 33.333 0.00 0.00 0.00 3.07
2501 2711 4.516092 AAGCGCTTAAAACTATACTGCG 57.484 40.909 23.72 0.00 43.91 5.18
2504 2714 4.698304 TGCCAAAGCGCTTAAAACTATACT 59.302 37.500 25.33 0.00 44.31 2.12
2505 2715 4.976987 TGCCAAAGCGCTTAAAACTATAC 58.023 39.130 25.33 6.27 44.31 1.47
2519 2729 0.609662 ATGACACCCATTGCCAAAGC 59.390 50.000 0.00 0.00 40.48 3.51
2539 2749 6.668323 ACATGTAACAGTTGTAAAGATGCAC 58.332 36.000 0.00 0.00 0.00 4.57
2568 2778 8.303876 AGTTAAACATAAAATGTGTGGTGGATC 58.696 33.333 0.00 0.00 44.07 3.36
2623 2833 5.823045 AGCTAACAAATAGGCATGGAGTAAC 59.177 40.000 0.00 0.00 31.83 2.50
2626 2836 4.510167 AGCTAACAAATAGGCATGGAGT 57.490 40.909 0.00 0.00 31.83 3.85
2641 2851 8.870879 AGAAAACATATGTTCTACGAAGCTAAC 58.129 33.333 21.02 2.00 37.25 2.34
2985 3195 3.010200 AGTTTCCATCAGGATTCAGGC 57.990 47.619 0.00 0.00 45.26 4.85
3018 3228 7.589954 GTGTTGTATTTCAAAACGCTATCAACT 59.410 33.333 0.00 0.00 35.01 3.16
3049 3259 4.051237 CAGTGATGAACGAAACAGAGTGA 58.949 43.478 0.00 0.00 0.00 3.41
3075 3285 3.321968 ACAAAACAGAGGAAGGCCAAATC 59.678 43.478 5.01 0.00 36.29 2.17
3151 3361 8.637986 TGATACTTTCAAACATAAGCAAAAGGT 58.362 29.630 0.00 0.00 0.00 3.50
3261 3471 4.438744 GCAGCCAACATTACCACAGATTAC 60.439 45.833 0.00 0.00 0.00 1.89
3284 3494 7.385778 TGAACAGGAAATATTTTACCTTCCG 57.614 36.000 1.43 0.00 41.87 4.30
3364 3663 2.910319 AGCATGACCACCTTTGTACCTA 59.090 45.455 0.00 0.00 0.00 3.08
3639 4062 8.204836 CAGGGTGGTATAGCTAATAATATCCAC 58.795 40.741 0.00 8.71 41.08 4.02
3640 4063 7.347222 CCAGGGTGGTATAGCTAATAATATCCA 59.653 40.741 0.00 0.00 31.35 3.41
3641 4064 7.736893 CCAGGGTGGTATAGCTAATAATATCC 58.263 42.308 0.00 0.00 31.35 2.59
3692 4115 7.865706 TCTAAAAGAAGAGAAGTGCAAAGTT 57.134 32.000 0.00 0.00 0.00 2.66
3791 4214 6.539826 TGGTGCATTGTTGTCTATCAGATAAG 59.460 38.462 0.00 0.00 0.00 1.73
3792 4215 6.316140 GTGGTGCATTGTTGTCTATCAGATAA 59.684 38.462 0.00 0.00 0.00 1.75
3793 4216 5.817296 GTGGTGCATTGTTGTCTATCAGATA 59.183 40.000 0.00 0.00 0.00 1.98
3794 4217 4.637534 GTGGTGCATTGTTGTCTATCAGAT 59.362 41.667 0.00 0.00 0.00 2.90
3795 4218 4.002982 GTGGTGCATTGTTGTCTATCAGA 58.997 43.478 0.00 0.00 0.00 3.27
3796 4219 4.005650 AGTGGTGCATTGTTGTCTATCAG 58.994 43.478 0.00 0.00 0.00 2.90
3797 4220 4.019792 AGTGGTGCATTGTTGTCTATCA 57.980 40.909 0.00 0.00 0.00 2.15
3798 4221 4.216257 ACAAGTGGTGCATTGTTGTCTATC 59.784 41.667 0.00 0.00 36.23 2.08
3799 4222 4.144297 ACAAGTGGTGCATTGTTGTCTAT 58.856 39.130 0.00 0.00 36.23 1.98
3800 4223 3.550820 ACAAGTGGTGCATTGTTGTCTA 58.449 40.909 0.00 0.00 36.23 2.59
3801 4224 2.378038 ACAAGTGGTGCATTGTTGTCT 58.622 42.857 0.00 0.00 36.23 3.41
3802 4225 2.869233 ACAAGTGGTGCATTGTTGTC 57.131 45.000 0.00 0.00 36.23 3.18
3813 4236 0.106519 AAGGAGCAGCAACAAGTGGT 60.107 50.000 0.00 0.00 38.97 4.16
3814 4237 1.035139 AAAGGAGCAGCAACAAGTGG 58.965 50.000 0.00 0.00 0.00 4.00
3815 4238 5.824904 ATATAAAGGAGCAGCAACAAGTG 57.175 39.130 0.00 0.00 0.00 3.16
3816 4239 6.840780 AAATATAAAGGAGCAGCAACAAGT 57.159 33.333 0.00 0.00 0.00 3.16
3819 4242 9.845740 TCTTATAAATATAAAGGAGCAGCAACA 57.154 29.630 0.00 0.00 0.00 3.33
3906 4330 8.755028 TCATAGTACTACATTAGCACCAGAAAA 58.245 33.333 4.31 0.00 0.00 2.29
3994 4418 3.008266 TGGAGTTTCATCATGCTCACAGA 59.992 43.478 0.00 0.00 0.00 3.41
4167 4591 6.070656 TCTCCTGATTTTTCACAAGATTGGT 58.929 36.000 0.00 0.00 0.00 3.67
4253 4677 5.831103 AGGTACATCCATTTTTCTGGTGAT 58.169 37.500 0.00 0.00 37.57 3.06
4365 4794 7.228308 CCCAAGAAAATGCCATAAAAGTGAAAA 59.772 33.333 0.00 0.00 0.00 2.29
4366 4795 6.709846 CCCAAGAAAATGCCATAAAAGTGAAA 59.290 34.615 0.00 0.00 0.00 2.69
4369 4798 4.392754 GCCCAAGAAAATGCCATAAAAGTG 59.607 41.667 0.00 0.00 0.00 3.16
4370 4799 4.565444 GGCCCAAGAAAATGCCATAAAAGT 60.565 41.667 0.00 0.00 43.46 2.66
4371 4800 3.940852 GGCCCAAGAAAATGCCATAAAAG 59.059 43.478 0.00 0.00 43.46 2.27
4476 4973 9.088987 AGCTTGTTCCCTGAAAATAAAATCTAA 57.911 29.630 0.00 0.00 0.00 2.10
4638 5136 6.018098 CACATTTTGCAAGCCAATTCAGTTAA 60.018 34.615 0.00 0.00 32.49 2.01
4794 5294 1.460689 ACAGGACAACGGGGAAGGA 60.461 57.895 0.00 0.00 0.00 3.36
4867 5367 5.705397 ATCACTTGAGATTGATCCAGGAA 57.295 39.130 0.00 0.00 0.00 3.36
4932 5432 4.711949 AACAGGGCTGCTGCTCGG 62.712 66.667 13.79 13.79 46.20 4.63
5074 5588 4.647424 ATCACAGAGCCGTTTTGAAAAA 57.353 36.364 0.00 0.00 0.00 1.94
5075 5589 4.358851 CAATCACAGAGCCGTTTTGAAAA 58.641 39.130 0.00 0.00 0.00 2.29
5076 5590 3.243367 CCAATCACAGAGCCGTTTTGAAA 60.243 43.478 0.00 0.00 0.00 2.69
5077 5591 2.293122 CCAATCACAGAGCCGTTTTGAA 59.707 45.455 0.00 0.00 0.00 2.69
5078 5592 1.879380 CCAATCACAGAGCCGTTTTGA 59.121 47.619 0.00 0.00 0.00 2.69
5079 5593 1.608590 ACCAATCACAGAGCCGTTTTG 59.391 47.619 0.00 0.00 0.00 2.44
5080 5594 1.981256 ACCAATCACAGAGCCGTTTT 58.019 45.000 0.00 0.00 0.00 2.43
5081 5595 1.880027 GAACCAATCACAGAGCCGTTT 59.120 47.619 0.00 0.00 0.00 3.60
5082 5596 1.072331 AGAACCAATCACAGAGCCGTT 59.928 47.619 0.00 0.00 0.00 4.44
5083 5597 0.687354 AGAACCAATCACAGAGCCGT 59.313 50.000 0.00 0.00 0.00 5.68
5084 5598 1.338105 TGAGAACCAATCACAGAGCCG 60.338 52.381 0.00 0.00 0.00 5.52
5085 5599 2.479566 TGAGAACCAATCACAGAGCC 57.520 50.000 0.00 0.00 0.00 4.70
5086 5600 3.406764 ACTTGAGAACCAATCACAGAGC 58.593 45.455 0.00 0.00 33.68 4.09
5294 6105 2.415625 CCTCCAGTACCTTTCGTCTTCG 60.416 54.545 0.00 0.00 38.55 3.79
5342 6153 6.000891 TGTTCTTCCAAAATCACATCGAAG 57.999 37.500 0.00 0.00 0.00 3.79
5424 6235 0.322098 CCAACCATACCGACAAGGCA 60.322 55.000 0.00 0.00 46.52 4.75
5450 6261 4.650588 CCTGGGCCATCATTTGATTTAGAA 59.349 41.667 6.72 0.00 31.21 2.10
5451 6262 4.217510 CCTGGGCCATCATTTGATTTAGA 58.782 43.478 6.72 0.00 31.21 2.10
5477 6289 2.456577 TGCCTGTAGCTCAGACATGTA 58.543 47.619 12.91 0.00 46.27 2.29
5491 6303 5.869649 ACAGAAAACCTTATTTTGCCTGT 57.130 34.783 0.00 0.00 32.63 4.00
5492 6304 6.200854 GTCAACAGAAAACCTTATTTTGCCTG 59.799 38.462 0.00 0.00 0.00 4.85
5512 6324 6.959671 TTTGTCCTGTGAATTTTTGTCAAC 57.040 33.333 0.00 0.00 0.00 3.18
5518 6330 9.271828 GGATACAAATTTGTCCTGTGAATTTTT 57.728 29.630 26.46 0.46 42.35 1.94
5551 6363 8.487176 GGCATACATAAGAAAACAAAAACACTG 58.513 33.333 0.00 0.00 0.00 3.66
5560 6372 7.766738 TCGATACAAGGCATACATAAGAAAACA 59.233 33.333 0.00 0.00 0.00 2.83
5561 6373 8.138365 TCGATACAAGGCATACATAAGAAAAC 57.862 34.615 0.00 0.00 0.00 2.43
5562 6374 8.902540 ATCGATACAAGGCATACATAAGAAAA 57.097 30.769 0.00 0.00 0.00 2.29
5563 6375 8.902540 AATCGATACAAGGCATACATAAGAAA 57.097 30.769 0.00 0.00 0.00 2.52
5564 6376 9.639601 CTAATCGATACAAGGCATACATAAGAA 57.360 33.333 0.00 0.00 0.00 2.52
5565 6377 7.759886 GCTAATCGATACAAGGCATACATAAGA 59.240 37.037 0.00 0.00 0.00 2.10
5625 6442 6.749139 TCACATCTACAGGTCATACATTAGC 58.251 40.000 0.00 0.00 0.00 3.09
5639 6456 6.230472 ACTGCAGTACAAAATCACATCTACA 58.770 36.000 20.16 0.00 0.00 2.74
5641 6458 6.934083 TGAACTGCAGTACAAAATCACATCTA 59.066 34.615 22.01 0.00 0.00 1.98
5709 6530 5.221303 CCTTCTTTCACCATTTCTGCTTGAA 60.221 40.000 0.00 0.00 0.00 2.69
5721 6542 1.133363 TTCGGTCCCTTCTTTCACCA 58.867 50.000 0.00 0.00 0.00 4.17
5770 6591 1.874466 GGCGACGAGAGCAAGTAGC 60.874 63.158 0.00 0.00 46.19 3.58
5771 6592 0.109272 TTGGCGACGAGAGCAAGTAG 60.109 55.000 0.00 0.00 36.08 2.57
5772 6593 0.388134 GTTGGCGACGAGAGCAAGTA 60.388 55.000 0.00 0.00 36.08 2.24
5774 6595 2.383527 GGTTGGCGACGAGAGCAAG 61.384 63.158 0.00 0.00 36.08 4.01
5775 6596 2.357034 GGTTGGCGACGAGAGCAA 60.357 61.111 0.00 0.00 36.08 3.91
5777 6598 2.811317 CAGGTTGGCGACGAGAGC 60.811 66.667 0.00 0.00 0.00 4.09
5778 6599 2.811317 GCAGGTTGGCGACGAGAG 60.811 66.667 0.00 0.00 0.00 3.20
5779 6600 4.373116 GGCAGGTTGGCGACGAGA 62.373 66.667 0.00 0.00 31.79 4.04
5793 6614 4.577677 TTGACAGCAAGGCCGGCA 62.578 61.111 30.85 0.00 0.00 5.69
5794 6615 4.043200 GTTGACAGCAAGGCCGGC 62.043 66.667 21.18 21.18 34.01 6.13
5795 6616 3.365265 GGTTGACAGCAAGGCCGG 61.365 66.667 0.00 0.00 34.01 6.13
5796 6617 3.365265 GGGTTGACAGCAAGGCCG 61.365 66.667 0.00 0.00 34.01 6.13
5797 6618 2.991540 GGGGTTGACAGCAAGGCC 60.992 66.667 0.00 0.00 34.01 5.19
5798 6619 3.365265 CGGGGTTGACAGCAAGGC 61.365 66.667 0.00 0.00 34.01 4.35
5799 6620 3.365265 GCGGGGTTGACAGCAAGG 61.365 66.667 0.00 0.00 34.01 3.61
5800 6621 1.898574 AAGCGGGGTTGACAGCAAG 60.899 57.895 0.00 0.00 34.01 4.01
5801 6622 2.192861 CAAGCGGGGTTGACAGCAA 61.193 57.895 4.67 0.00 0.00 3.91
5802 6623 2.594303 CAAGCGGGGTTGACAGCA 60.594 61.111 4.67 0.00 0.00 4.41
5803 6624 1.896660 TTCAAGCGGGGTTGACAGC 60.897 57.895 12.39 0.00 36.15 4.40
5804 6625 1.515521 GGTTCAAGCGGGGTTGACAG 61.516 60.000 12.39 0.00 36.15 3.51
5805 6626 1.527380 GGTTCAAGCGGGGTTGACA 60.527 57.895 12.39 2.90 36.15 3.58
5806 6627 0.822121 AAGGTTCAAGCGGGGTTGAC 60.822 55.000 12.39 8.25 36.15 3.18
5807 6628 0.821711 CAAGGTTCAAGCGGGGTTGA 60.822 55.000 9.07 9.07 34.56 3.18
5808 6629 1.659794 CAAGGTTCAAGCGGGGTTG 59.340 57.895 4.30 4.30 0.00 3.77
5809 6630 1.530655 CCAAGGTTCAAGCGGGGTT 60.531 57.895 0.00 0.00 0.00 4.11
5810 6631 2.115266 CCAAGGTTCAAGCGGGGT 59.885 61.111 0.00 0.00 0.00 4.95
5811 6632 3.373565 GCCAAGGTTCAAGCGGGG 61.374 66.667 3.03 0.00 0.00 5.73
5812 6633 3.737172 CGCCAAGGTTCAAGCGGG 61.737 66.667 0.00 0.00 44.64 6.13
5815 6636 2.282180 TCCCGCCAAGGTTCAAGC 60.282 61.111 0.00 0.00 38.74 4.01
5816 6637 1.073199 AGTCCCGCCAAGGTTCAAG 59.927 57.895 0.00 0.00 38.74 3.02
5817 6638 1.228124 CAGTCCCGCCAAGGTTCAA 60.228 57.895 0.00 0.00 38.74 2.69
5818 6639 1.701031 TTCAGTCCCGCCAAGGTTCA 61.701 55.000 0.00 0.00 38.74 3.18
5819 6640 0.955919 CTTCAGTCCCGCCAAGGTTC 60.956 60.000 0.00 0.00 38.74 3.62
5820 6641 1.073199 CTTCAGTCCCGCCAAGGTT 59.927 57.895 0.00 0.00 38.74 3.50
5821 6642 2.750350 CTTCAGTCCCGCCAAGGT 59.250 61.111 0.00 0.00 38.74 3.50
5822 6643 2.045926 CCTTCAGTCCCGCCAAGG 60.046 66.667 0.00 0.00 40.63 3.61
5823 6644 2.045926 CCCTTCAGTCCCGCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
5824 6645 2.852075 ACCCTTCAGTCCCGCCAA 60.852 61.111 0.00 0.00 0.00 4.52
5825 6646 3.636231 CACCCTTCAGTCCCGCCA 61.636 66.667 0.00 0.00 0.00 5.69
5826 6647 3.637273 ACACCCTTCAGTCCCGCC 61.637 66.667 0.00 0.00 0.00 6.13
5827 6648 2.185310 ATCACACCCTTCAGTCCCGC 62.185 60.000 0.00 0.00 0.00 6.13
5828 6649 0.108138 GATCACACCCTTCAGTCCCG 60.108 60.000 0.00 0.00 0.00 5.14
5829 6650 0.253327 GGATCACACCCTTCAGTCCC 59.747 60.000 0.00 0.00 0.00 4.46
5830 6651 1.065854 CAGGATCACACCCTTCAGTCC 60.066 57.143 0.00 0.00 0.00 3.85
5831 6652 1.065854 CCAGGATCACACCCTTCAGTC 60.066 57.143 0.00 0.00 0.00 3.51
5832 6653 0.987294 CCAGGATCACACCCTTCAGT 59.013 55.000 0.00 0.00 0.00 3.41
5833 6654 1.279496 TCCAGGATCACACCCTTCAG 58.721 55.000 0.00 0.00 0.00 3.02
5834 6655 1.839994 GATCCAGGATCACACCCTTCA 59.160 52.381 23.00 0.00 38.77 3.02
5835 6656 1.202580 CGATCCAGGATCACACCCTTC 60.203 57.143 26.37 0.77 38.84 3.46
5836 6657 0.833287 CGATCCAGGATCACACCCTT 59.167 55.000 26.37 0.00 38.84 3.95
5837 6658 0.325671 ACGATCCAGGATCACACCCT 60.326 55.000 26.37 1.42 38.84 4.34
5838 6659 0.541863 AACGATCCAGGATCACACCC 59.458 55.000 26.37 2.11 38.84 4.61
5839 6660 1.656652 CAACGATCCAGGATCACACC 58.343 55.000 26.37 2.82 38.84 4.16
5840 6661 1.066143 ACCAACGATCCAGGATCACAC 60.066 52.381 26.37 3.19 38.84 3.82
5841 6662 1.275666 ACCAACGATCCAGGATCACA 58.724 50.000 26.37 0.00 38.84 3.58
5842 6663 2.224066 CCTACCAACGATCCAGGATCAC 60.224 54.545 26.37 4.26 38.84 3.06
5843 6664 2.039418 CCTACCAACGATCCAGGATCA 58.961 52.381 26.37 7.39 38.84 2.92
5844 6665 1.344763 CCCTACCAACGATCCAGGATC 59.655 57.143 18.69 18.69 35.88 3.36
5845 6666 1.062428 TCCCTACCAACGATCCAGGAT 60.062 52.381 0.00 0.00 0.00 3.24
5846 6667 0.337082 TCCCTACCAACGATCCAGGA 59.663 55.000 0.00 0.00 0.00 3.86
5847 6668 1.070758 CATCCCTACCAACGATCCAGG 59.929 57.143 0.00 0.00 0.00 4.45
5848 6669 1.070758 CCATCCCTACCAACGATCCAG 59.929 57.143 0.00 0.00 0.00 3.86
5849 6670 1.128200 CCATCCCTACCAACGATCCA 58.872 55.000 0.00 0.00 0.00 3.41
5850 6671 0.250338 GCCATCCCTACCAACGATCC 60.250 60.000 0.00 0.00 0.00 3.36
5851 6672 0.468226 TGCCATCCCTACCAACGATC 59.532 55.000 0.00 0.00 0.00 3.69
5852 6673 0.916086 TTGCCATCCCTACCAACGAT 59.084 50.000 0.00 0.00 0.00 3.73
5853 6674 0.916086 ATTGCCATCCCTACCAACGA 59.084 50.000 0.00 0.00 0.00 3.85
5854 6675 1.024271 CATTGCCATCCCTACCAACG 58.976 55.000 0.00 0.00 0.00 4.10
5855 6676 1.064017 TCCATTGCCATCCCTACCAAC 60.064 52.381 0.00 0.00 0.00 3.77
5856 6677 1.303898 TCCATTGCCATCCCTACCAA 58.696 50.000 0.00 0.00 0.00 3.67
5857 6678 1.533187 ATCCATTGCCATCCCTACCA 58.467 50.000 0.00 0.00 0.00 3.25
5858 6679 3.806949 TTATCCATTGCCATCCCTACC 57.193 47.619 0.00 0.00 0.00 3.18
5859 6680 4.729868 ACTTTATCCATTGCCATCCCTAC 58.270 43.478 0.00 0.00 0.00 3.18
5860 6681 6.484288 CATACTTTATCCATTGCCATCCCTA 58.516 40.000 0.00 0.00 0.00 3.53
5861 6682 3.979501 ACTTTATCCATTGCCATCCCT 57.020 42.857 0.00 0.00 0.00 4.20
5862 6683 4.463891 CCATACTTTATCCATTGCCATCCC 59.536 45.833 0.00 0.00 0.00 3.85
5863 6684 4.463891 CCCATACTTTATCCATTGCCATCC 59.536 45.833 0.00 0.00 0.00 3.51
5864 6685 5.079643 ACCCATACTTTATCCATTGCCATC 58.920 41.667 0.00 0.00 0.00 3.51
5865 6686 5.078683 ACCCATACTTTATCCATTGCCAT 57.921 39.130 0.00 0.00 0.00 4.40
5866 6687 4.469657 GACCCATACTTTATCCATTGCCA 58.530 43.478 0.00 0.00 0.00 4.92
5867 6688 3.502211 CGACCCATACTTTATCCATTGCC 59.498 47.826 0.00 0.00 0.00 4.52
5868 6689 3.502211 CCGACCCATACTTTATCCATTGC 59.498 47.826 0.00 0.00 0.00 3.56
5869 6690 4.714632 ACCGACCCATACTTTATCCATTG 58.285 43.478 0.00 0.00 0.00 2.82
5870 6691 5.367352 TGTACCGACCCATACTTTATCCATT 59.633 40.000 0.00 0.00 0.00 3.16
5871 6692 4.903049 TGTACCGACCCATACTTTATCCAT 59.097 41.667 0.00 0.00 0.00 3.41
5872 6693 4.288398 TGTACCGACCCATACTTTATCCA 58.712 43.478 0.00 0.00 0.00 3.41
5873 6694 4.942761 TGTACCGACCCATACTTTATCC 57.057 45.455 0.00 0.00 0.00 2.59
5874 6695 6.756221 AGATTGTACCGACCCATACTTTATC 58.244 40.000 0.00 0.00 0.00 1.75
5875 6696 6.239515 GGAGATTGTACCGACCCATACTTTAT 60.240 42.308 0.00 0.00 0.00 1.40
5876 6697 5.069516 GGAGATTGTACCGACCCATACTTTA 59.930 44.000 0.00 0.00 0.00 1.85
5877 6698 4.141779 GGAGATTGTACCGACCCATACTTT 60.142 45.833 0.00 0.00 0.00 2.66
5878 6699 3.387050 GGAGATTGTACCGACCCATACTT 59.613 47.826 0.00 0.00 0.00 2.24
5879 6700 2.963782 GGAGATTGTACCGACCCATACT 59.036 50.000 0.00 0.00 0.00 2.12
5880 6701 2.963782 AGGAGATTGTACCGACCCATAC 59.036 50.000 0.00 0.00 0.00 2.39
5881 6702 3.323774 AGGAGATTGTACCGACCCATA 57.676 47.619 0.00 0.00 0.00 2.74
5882 6703 2.176247 AGGAGATTGTACCGACCCAT 57.824 50.000 0.00 0.00 0.00 4.00
5883 6704 1.829222 GAAGGAGATTGTACCGACCCA 59.171 52.381 0.00 0.00 0.00 4.51
5884 6705 2.108970 AGAAGGAGATTGTACCGACCC 58.891 52.381 0.00 0.00 0.00 4.46
5885 6706 2.159085 CCAGAAGGAGATTGTACCGACC 60.159 54.545 0.00 0.00 36.89 4.79
5886 6707 2.738964 GCCAGAAGGAGATTGTACCGAC 60.739 54.545 0.00 0.00 36.89 4.79
5887 6708 1.480954 GCCAGAAGGAGATTGTACCGA 59.519 52.381 0.00 0.00 36.89 4.69
5888 6709 1.473434 GGCCAGAAGGAGATTGTACCG 60.473 57.143 0.00 0.00 36.89 4.02
5889 6710 1.559682 TGGCCAGAAGGAGATTGTACC 59.440 52.381 0.00 0.00 36.89 3.34
5890 6711 3.350219 TTGGCCAGAAGGAGATTGTAC 57.650 47.619 5.11 0.00 36.89 2.90
5891 6712 3.330701 AGTTTGGCCAGAAGGAGATTGTA 59.669 43.478 5.11 0.00 36.89 2.41
5892 6713 2.108952 AGTTTGGCCAGAAGGAGATTGT 59.891 45.455 5.11 0.00 36.89 2.71
5893 6714 2.751806 GAGTTTGGCCAGAAGGAGATTG 59.248 50.000 5.11 0.00 36.89 2.67
5894 6715 2.376518 TGAGTTTGGCCAGAAGGAGATT 59.623 45.455 5.11 0.00 36.89 2.40
5895 6716 1.988107 TGAGTTTGGCCAGAAGGAGAT 59.012 47.619 5.11 0.00 36.89 2.75
5896 6717 1.434188 TGAGTTTGGCCAGAAGGAGA 58.566 50.000 5.11 0.00 36.89 3.71
5897 6718 2.503895 ATGAGTTTGGCCAGAAGGAG 57.496 50.000 5.11 0.00 36.89 3.69
5898 6719 2.026262 GGTATGAGTTTGGCCAGAAGGA 60.026 50.000 5.11 0.00 36.89 3.36
5899 6720 2.369394 GGTATGAGTTTGGCCAGAAGG 58.631 52.381 5.11 0.00 38.23 3.46
5900 6721 2.290896 TGGGTATGAGTTTGGCCAGAAG 60.291 50.000 5.11 0.00 0.00 2.85
5901 6722 1.707989 TGGGTATGAGTTTGGCCAGAA 59.292 47.619 5.11 0.29 0.00 3.02
5902 6723 1.004277 GTGGGTATGAGTTTGGCCAGA 59.996 52.381 5.11 0.00 0.00 3.86
5903 6724 1.271871 TGTGGGTATGAGTTTGGCCAG 60.272 52.381 5.11 0.00 0.00 4.85
5904 6725 0.774276 TGTGGGTATGAGTTTGGCCA 59.226 50.000 0.00 0.00 0.00 5.36
5905 6726 1.917872 TTGTGGGTATGAGTTTGGCC 58.082 50.000 0.00 0.00 0.00 5.36
5906 6727 4.055360 GTTTTTGTGGGTATGAGTTTGGC 58.945 43.478 0.00 0.00 0.00 4.52
5907 6728 5.301805 AGAGTTTTTGTGGGTATGAGTTTGG 59.698 40.000 0.00 0.00 0.00 3.28
5908 6729 6.391227 AGAGTTTTTGTGGGTATGAGTTTG 57.609 37.500 0.00 0.00 0.00 2.93
5909 6730 9.227777 GTATAGAGTTTTTGTGGGTATGAGTTT 57.772 33.333 0.00 0.00 0.00 2.66
5910 6731 8.603304 AGTATAGAGTTTTTGTGGGTATGAGTT 58.397 33.333 0.00 0.00 0.00 3.01
5911 6732 8.147244 AGTATAGAGTTTTTGTGGGTATGAGT 57.853 34.615 0.00 0.00 0.00 3.41
5912 6733 8.258007 TGAGTATAGAGTTTTTGTGGGTATGAG 58.742 37.037 0.00 0.00 0.00 2.90
5913 6734 8.141298 TGAGTATAGAGTTTTTGTGGGTATGA 57.859 34.615 0.00 0.00 0.00 2.15
5914 6735 8.964476 ATGAGTATAGAGTTTTTGTGGGTATG 57.036 34.615 0.00 0.00 0.00 2.39
5915 6736 8.211629 GGATGAGTATAGAGTTTTTGTGGGTAT 58.788 37.037 0.00 0.00 0.00 2.73
5916 6737 7.181305 TGGATGAGTATAGAGTTTTTGTGGGTA 59.819 37.037 0.00 0.00 0.00 3.69
5917 6738 6.012858 TGGATGAGTATAGAGTTTTTGTGGGT 60.013 38.462 0.00 0.00 0.00 4.51
5918 6739 6.414732 TGGATGAGTATAGAGTTTTTGTGGG 58.585 40.000 0.00 0.00 0.00 4.61
5919 6740 8.511604 AATGGATGAGTATAGAGTTTTTGTGG 57.488 34.615 0.00 0.00 0.00 4.17
5925 6746 9.739276 TGTTGAAAATGGATGAGTATAGAGTTT 57.261 29.630 0.00 0.00 0.00 2.66
5926 6747 9.911788 ATGTTGAAAATGGATGAGTATAGAGTT 57.088 29.630 0.00 0.00 0.00 3.01
5927 6748 9.911788 AATGTTGAAAATGGATGAGTATAGAGT 57.088 29.630 0.00 0.00 0.00 3.24
5929 6750 9.904198 TGAATGTTGAAAATGGATGAGTATAGA 57.096 29.630 0.00 0.00 0.00 1.98
5932 6753 8.418662 CCATGAATGTTGAAAATGGATGAGTAT 58.581 33.333 0.00 0.00 40.23 2.12
5933 6754 7.147863 CCCATGAATGTTGAAAATGGATGAGTA 60.148 37.037 0.00 0.00 40.23 2.59
5934 6755 6.351541 CCCATGAATGTTGAAAATGGATGAGT 60.352 38.462 0.00 0.00 40.23 3.41
5935 6756 6.046593 CCCATGAATGTTGAAAATGGATGAG 58.953 40.000 0.00 0.00 40.23 2.90
5936 6757 5.627272 GCCCATGAATGTTGAAAATGGATGA 60.627 40.000 0.00 0.00 40.23 2.92
5937 6758 4.573201 GCCCATGAATGTTGAAAATGGATG 59.427 41.667 0.00 0.00 40.23 3.51
5938 6759 4.225492 TGCCCATGAATGTTGAAAATGGAT 59.775 37.500 0.00 0.00 40.23 3.41
5939 6760 3.581770 TGCCCATGAATGTTGAAAATGGA 59.418 39.130 0.00 0.00 40.23 3.41
5940 6761 3.940319 TGCCCATGAATGTTGAAAATGG 58.060 40.909 0.00 0.00 38.01 3.16
5941 6762 7.612668 TTTATGCCCATGAATGTTGAAAATG 57.387 32.000 0.00 0.00 0.00 2.32
5942 6763 8.679100 CAATTTATGCCCATGAATGTTGAAAAT 58.321 29.630 0.00 0.00 29.05 1.82
5943 6764 7.881751 TCAATTTATGCCCATGAATGTTGAAAA 59.118 29.630 0.00 0.00 29.05 2.29
5944 6765 7.333921 GTCAATTTATGCCCATGAATGTTGAAA 59.666 33.333 0.00 0.00 29.05 2.69
5945 6766 6.817641 GTCAATTTATGCCCATGAATGTTGAA 59.182 34.615 0.00 0.00 29.05 2.69
5946 6767 6.070938 TGTCAATTTATGCCCATGAATGTTGA 60.071 34.615 0.00 0.21 29.05 3.18
5947 6768 6.036300 GTGTCAATTTATGCCCATGAATGTTG 59.964 38.462 0.00 0.00 29.05 3.33
5948 6769 6.108015 GTGTCAATTTATGCCCATGAATGTT 58.892 36.000 0.00 0.00 29.05 2.71
5949 6770 5.663456 GTGTCAATTTATGCCCATGAATGT 58.337 37.500 0.00 0.00 29.05 2.71
5950 6771 4.741185 CGTGTCAATTTATGCCCATGAATG 59.259 41.667 0.00 0.00 29.05 2.67
5951 6772 4.737352 GCGTGTCAATTTATGCCCATGAAT 60.737 41.667 0.00 0.00 0.00 2.57
5952 6773 3.428725 GCGTGTCAATTTATGCCCATGAA 60.429 43.478 0.00 0.00 0.00 2.57
5953 6774 2.098934 GCGTGTCAATTTATGCCCATGA 59.901 45.455 0.00 0.00 0.00 3.07
5954 6775 2.159268 TGCGTGTCAATTTATGCCCATG 60.159 45.455 0.00 0.00 0.00 3.66
5955 6776 2.098614 TGCGTGTCAATTTATGCCCAT 58.901 42.857 0.00 0.00 0.00 4.00
5956 6777 1.539157 TGCGTGTCAATTTATGCCCA 58.461 45.000 0.00 0.00 0.00 5.36
5957 6778 2.869233 ATGCGTGTCAATTTATGCCC 57.131 45.000 0.00 0.00 0.00 5.36
5958 6779 4.023279 TGGATATGCGTGTCAATTTATGCC 60.023 41.667 4.96 0.00 0.00 4.40
5959 6780 5.107109 TGGATATGCGTGTCAATTTATGC 57.893 39.130 4.96 0.00 0.00 3.14
5960 6781 6.017325 CGATGGATATGCGTGTCAATTTATG 58.983 40.000 4.96 0.00 0.00 1.90
5961 6782 5.122239 CCGATGGATATGCGTGTCAATTTAT 59.878 40.000 4.96 0.00 0.00 1.40
5962 6783 4.450757 CCGATGGATATGCGTGTCAATTTA 59.549 41.667 4.96 0.00 0.00 1.40
5963 6784 3.250762 CCGATGGATATGCGTGTCAATTT 59.749 43.478 4.96 0.00 0.00 1.82
5964 6785 2.807967 CCGATGGATATGCGTGTCAATT 59.192 45.455 4.96 0.00 0.00 2.32
5965 6786 2.416747 CCGATGGATATGCGTGTCAAT 58.583 47.619 4.96 0.00 0.00 2.57
5966 6787 1.864565 CCGATGGATATGCGTGTCAA 58.135 50.000 4.96 0.00 0.00 3.18
5967 6788 3.586430 CCGATGGATATGCGTGTCA 57.414 52.632 4.96 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.