Multiple sequence alignment - TraesCS6D01G134100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G134100 chr6D 100.000 4331 0 0 1 4331 101759892 101755562 0.000000e+00 7998.0
1 TraesCS6D01G134100 chr6B 93.210 2548 100 25 1131 3646 186707637 186705131 0.000000e+00 3679.0
2 TraesCS6D01G134100 chr6B 87.190 765 58 25 381 1130 186708406 186707667 0.000000e+00 833.0
3 TraesCS6D01G134100 chr6A 91.307 1898 92 35 159 2024 122698632 122696776 0.000000e+00 2523.0
4 TraesCS6D01G134100 chr6A 95.050 1394 45 9 2118 3488 122696725 122695333 0.000000e+00 2170.0
5 TraesCS6D01G134100 chr6A 95.833 48 1 1 3508 3555 122695334 122695288 4.640000e-10 76.8
6 TraesCS6D01G134100 chr3B 95.666 623 24 3 3711 4331 4272940 4273561 0.000000e+00 998.0
7 TraesCS6D01G134100 chrUn 94.373 622 33 2 3711 4331 435016459 435015839 0.000000e+00 953.0
8 TraesCS6D01G134100 chrUn 87.102 628 64 16 3713 4331 288752835 288753454 0.000000e+00 695.0
9 TraesCS6D01G134100 chrUn 86.943 628 65 16 3713 4331 225035261 225034642 0.000000e+00 689.0
10 TraesCS6D01G134100 chrUn 87.159 623 59 20 3722 4331 99830900 99830286 0.000000e+00 688.0
11 TraesCS6D01G134100 chr3A 94.373 622 33 2 3711 4331 24740289 24739669 0.000000e+00 953.0
12 TraesCS6D01G134100 chr2B 89.842 571 51 7 3764 4331 144601949 144601383 0.000000e+00 726.0
13 TraesCS6D01G134100 chr2B 85.191 628 78 14 3713 4331 246353824 246353203 7.900000e-177 630.0
14 TraesCS6D01G134100 chr2B 91.429 70 5 1 3713 3782 18926180 18926248 1.280000e-15 95.3
15 TraesCS6D01G134100 chr5A 87.261 628 66 14 3713 4331 467743045 467743667 0.000000e+00 704.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G134100 chr6D 101755562 101759892 4330 True 7998.000000 7998 100.000000 1 4331 1 chr6D.!!$R1 4330
1 TraesCS6D01G134100 chr6B 186705131 186708406 3275 True 2256.000000 3679 90.200000 381 3646 2 chr6B.!!$R1 3265
2 TraesCS6D01G134100 chr6A 122695288 122698632 3344 True 1589.933333 2523 94.063333 159 3555 3 chr6A.!!$R1 3396
3 TraesCS6D01G134100 chr3B 4272940 4273561 621 False 998.000000 998 95.666000 3711 4331 1 chr3B.!!$F1 620
4 TraesCS6D01G134100 chrUn 435015839 435016459 620 True 953.000000 953 94.373000 3711 4331 1 chrUn.!!$R3 620
5 TraesCS6D01G134100 chrUn 288752835 288753454 619 False 695.000000 695 87.102000 3713 4331 1 chrUn.!!$F1 618
6 TraesCS6D01G134100 chrUn 225034642 225035261 619 True 689.000000 689 86.943000 3713 4331 1 chrUn.!!$R2 618
7 TraesCS6D01G134100 chrUn 99830286 99830900 614 True 688.000000 688 87.159000 3722 4331 1 chrUn.!!$R1 609
8 TraesCS6D01G134100 chr3A 24739669 24740289 620 True 953.000000 953 94.373000 3711 4331 1 chr3A.!!$R1 620
9 TraesCS6D01G134100 chr2B 144601383 144601949 566 True 726.000000 726 89.842000 3764 4331 1 chr2B.!!$R1 567
10 TraesCS6D01G134100 chr2B 246353203 246353824 621 True 630.000000 630 85.191000 3713 4331 1 chr2B.!!$R2 618
11 TraesCS6D01G134100 chr5A 467743045 467743667 622 False 704.000000 704 87.261000 3713 4331 1 chr5A.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 484 0.250510 TACGCCTGTGCAAACATCCA 60.251 50.0 0.00 0.00 37.32 3.41 F
1045 1076 0.108424 CCTGCTCCTCTTCTTCGTGG 60.108 60.0 0.00 0.00 0.00 4.94 F
2254 2330 0.528466 TATTCTGCTTCCGCTGCGAG 60.528 55.0 25.45 15.03 36.97 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1744 0.036306 CACCGAAGCCTGGTTAGGTT 59.964 55.0 10.57 0.0 46.41 3.50 R
2376 2469 0.039437 AACAGTCAGACGTGCTACCG 60.039 55.0 0.00 0.0 0.00 4.02 R
3495 3612 0.036010 AGGAAATCTGCAGGTGACCG 60.036 55.0 15.13 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.983720 ACGGATATGTCTAACACTAACATGC 59.016 40.000 0.00 0.00 35.38 4.06
26 27 5.117135 CGGATATGTCTAACACTAACATGCG 59.883 44.000 0.00 0.00 35.38 4.73
27 28 6.213677 GGATATGTCTAACACTAACATGCGA 58.786 40.000 0.00 0.00 35.38 5.10
28 29 6.144080 GGATATGTCTAACACTAACATGCGAC 59.856 42.308 0.00 0.00 35.38 5.19
29 30 4.514781 TGTCTAACACTAACATGCGACT 57.485 40.909 0.00 0.00 0.00 4.18
30 31 5.632244 TGTCTAACACTAACATGCGACTA 57.368 39.130 0.00 0.00 0.00 2.59
31 32 5.637809 TGTCTAACACTAACATGCGACTAG 58.362 41.667 0.00 0.00 0.00 2.57
32 33 5.413523 TGTCTAACACTAACATGCGACTAGA 59.586 40.000 0.00 0.00 0.00 2.43
33 34 6.095021 TGTCTAACACTAACATGCGACTAGAT 59.905 38.462 0.00 0.00 0.00 1.98
34 35 7.281549 TGTCTAACACTAACATGCGACTAGATA 59.718 37.037 0.00 0.00 0.00 1.98
35 36 7.587028 GTCTAACACTAACATGCGACTAGATAC 59.413 40.741 0.00 0.00 0.00 2.24
36 37 5.830000 ACACTAACATGCGACTAGATACA 57.170 39.130 0.00 0.00 0.00 2.29
37 38 6.392625 ACACTAACATGCGACTAGATACAT 57.607 37.500 0.00 0.00 0.00 2.29
38 39 6.806751 ACACTAACATGCGACTAGATACATT 58.193 36.000 0.00 0.00 0.00 2.71
39 40 6.918569 ACACTAACATGCGACTAGATACATTC 59.081 38.462 0.00 0.00 0.00 2.67
40 41 6.086896 CACTAACATGCGACTAGATACATTCG 59.913 42.308 0.00 0.00 34.56 3.34
41 42 4.569761 ACATGCGACTAGATACATTCGT 57.430 40.909 0.00 0.00 33.95 3.85
42 43 4.933330 ACATGCGACTAGATACATTCGTT 58.067 39.130 0.00 0.00 33.95 3.85
43 44 4.976731 ACATGCGACTAGATACATTCGTTC 59.023 41.667 0.00 0.00 33.95 3.95
44 45 4.895224 TGCGACTAGATACATTCGTTCT 57.105 40.909 0.00 0.00 33.95 3.01
45 46 5.996669 TGCGACTAGATACATTCGTTCTA 57.003 39.130 0.00 0.00 33.95 2.10
46 47 6.367686 TGCGACTAGATACATTCGTTCTAA 57.632 37.500 0.00 0.00 33.95 2.10
47 48 6.788243 TGCGACTAGATACATTCGTTCTAAA 58.212 36.000 0.00 0.00 33.95 1.85
48 49 6.690098 TGCGACTAGATACATTCGTTCTAAAC 59.310 38.462 0.00 0.00 33.95 2.01
49 50 6.690098 GCGACTAGATACATTCGTTCTAAACA 59.310 38.462 0.00 0.00 33.95 2.83
50 51 7.219535 GCGACTAGATACATTCGTTCTAAACAA 59.780 37.037 0.00 0.00 33.95 2.83
51 52 9.069078 CGACTAGATACATTCGTTCTAAACAAA 57.931 33.333 0.00 0.00 0.00 2.83
55 56 8.697846 AGATACATTCGTTCTAAACAAATCGA 57.302 30.769 0.00 0.00 0.00 3.59
56 57 9.146984 AGATACATTCGTTCTAAACAAATCGAA 57.853 29.630 0.00 0.00 40.50 3.71
57 58 9.409949 GATACATTCGTTCTAAACAAATCGAAG 57.590 33.333 0.00 0.00 39.81 3.79
58 59 7.416154 ACATTCGTTCTAAACAAATCGAAGA 57.584 32.000 0.00 0.00 45.75 2.87
59 60 7.288672 ACATTCGTTCTAAACAAATCGAAGAC 58.711 34.615 0.00 0.00 42.51 3.01
60 61 6.831727 TTCGTTCTAAACAAATCGAAGACA 57.168 33.333 0.00 0.00 42.51 3.41
61 62 6.831727 TCGTTCTAAACAAATCGAAGACAA 57.168 33.333 0.00 0.00 42.51 3.18
62 63 6.873656 TCGTTCTAAACAAATCGAAGACAAG 58.126 36.000 0.00 0.00 42.51 3.16
63 64 6.698329 TCGTTCTAAACAAATCGAAGACAAGA 59.302 34.615 0.00 0.00 42.51 3.02
64 65 7.223193 TCGTTCTAAACAAATCGAAGACAAGAA 59.777 33.333 0.00 0.00 42.51 2.52
65 66 8.009974 CGTTCTAAACAAATCGAAGACAAGAAT 58.990 33.333 0.00 0.00 42.51 2.40
66 67 9.665264 GTTCTAAACAAATCGAAGACAAGAATT 57.335 29.630 0.00 0.00 42.51 2.17
70 71 8.925161 AAACAAATCGAAGACAAGAATTTTGA 57.075 26.923 7.56 0.00 42.51 2.69
71 72 8.566008 AACAAATCGAAGACAAGAATTTTGAG 57.434 30.769 7.56 0.00 42.51 3.02
72 73 7.930217 ACAAATCGAAGACAAGAATTTTGAGA 58.070 30.769 7.56 0.00 42.51 3.27
73 74 8.072567 ACAAATCGAAGACAAGAATTTTGAGAG 58.927 33.333 7.56 0.00 42.51 3.20
74 75 6.734104 ATCGAAGACAAGAATTTTGAGAGG 57.266 37.500 0.00 0.00 42.51 3.69
75 76 4.997395 TCGAAGACAAGAATTTTGAGAGGG 59.003 41.667 7.18 0.00 0.00 4.30
76 77 4.997395 CGAAGACAAGAATTTTGAGAGGGA 59.003 41.667 7.18 0.00 0.00 4.20
77 78 5.645497 CGAAGACAAGAATTTTGAGAGGGAT 59.355 40.000 7.18 0.00 0.00 3.85
78 79 6.402983 CGAAGACAAGAATTTTGAGAGGGATG 60.403 42.308 7.18 0.00 0.00 3.51
79 80 5.259632 AGACAAGAATTTTGAGAGGGATGG 58.740 41.667 7.18 0.00 0.00 3.51
80 81 5.014544 AGACAAGAATTTTGAGAGGGATGGA 59.985 40.000 7.18 0.00 0.00 3.41
81 82 5.259632 ACAAGAATTTTGAGAGGGATGGAG 58.740 41.667 7.18 0.00 0.00 3.86
82 83 5.222213 ACAAGAATTTTGAGAGGGATGGAGT 60.222 40.000 7.18 0.00 0.00 3.85
83 84 6.012508 ACAAGAATTTTGAGAGGGATGGAGTA 60.013 38.462 7.18 0.00 0.00 2.59
84 85 6.245890 AGAATTTTGAGAGGGATGGAGTAG 57.754 41.667 0.00 0.00 0.00 2.57
85 86 5.728741 AGAATTTTGAGAGGGATGGAGTAGT 59.271 40.000 0.00 0.00 0.00 2.73
86 87 6.903534 AGAATTTTGAGAGGGATGGAGTAGTA 59.096 38.462 0.00 0.00 0.00 1.82
87 88 6.739331 ATTTTGAGAGGGATGGAGTAGTAG 57.261 41.667 0.00 0.00 0.00 2.57
88 89 5.467668 TTTGAGAGGGATGGAGTAGTAGA 57.532 43.478 0.00 0.00 0.00 2.59
89 90 5.467668 TTGAGAGGGATGGAGTAGTAGAA 57.532 43.478 0.00 0.00 0.00 2.10
90 91 5.671463 TGAGAGGGATGGAGTAGTAGAAT 57.329 43.478 0.00 0.00 0.00 2.40
91 92 6.031964 TGAGAGGGATGGAGTAGTAGAATT 57.968 41.667 0.00 0.00 0.00 2.17
92 93 5.835819 TGAGAGGGATGGAGTAGTAGAATTG 59.164 44.000 0.00 0.00 0.00 2.32
93 94 4.591072 AGAGGGATGGAGTAGTAGAATTGC 59.409 45.833 0.00 0.00 0.00 3.56
94 95 3.322254 AGGGATGGAGTAGTAGAATTGCG 59.678 47.826 0.00 0.00 0.00 4.85
95 96 3.060602 GGATGGAGTAGTAGAATTGCGC 58.939 50.000 0.00 0.00 0.00 6.09
96 97 3.243907 GGATGGAGTAGTAGAATTGCGCT 60.244 47.826 9.73 0.00 0.00 5.92
97 98 3.887621 TGGAGTAGTAGAATTGCGCTT 57.112 42.857 9.73 0.00 0.00 4.68
98 99 4.202245 TGGAGTAGTAGAATTGCGCTTT 57.798 40.909 9.73 1.70 0.00 3.51
99 100 4.575885 TGGAGTAGTAGAATTGCGCTTTT 58.424 39.130 9.73 1.26 0.00 2.27
100 101 5.001232 TGGAGTAGTAGAATTGCGCTTTTT 58.999 37.500 9.73 0.00 0.00 1.94
141 142 4.705337 AAAAACTACACTCGGCAACAAA 57.295 36.364 0.00 0.00 0.00 2.83
142 143 3.685836 AAACTACACTCGGCAACAAAC 57.314 42.857 0.00 0.00 0.00 2.93
143 144 2.319136 ACTACACTCGGCAACAAACA 57.681 45.000 0.00 0.00 0.00 2.83
144 145 2.634600 ACTACACTCGGCAACAAACAA 58.365 42.857 0.00 0.00 0.00 2.83
145 146 2.353579 ACTACACTCGGCAACAAACAAC 59.646 45.455 0.00 0.00 0.00 3.32
146 147 1.459450 ACACTCGGCAACAAACAACT 58.541 45.000 0.00 0.00 0.00 3.16
147 148 1.816224 ACACTCGGCAACAAACAACTT 59.184 42.857 0.00 0.00 0.00 2.66
148 149 3.011119 ACACTCGGCAACAAACAACTTA 58.989 40.909 0.00 0.00 0.00 2.24
149 150 3.440872 ACACTCGGCAACAAACAACTTAA 59.559 39.130 0.00 0.00 0.00 1.85
150 151 3.789224 CACTCGGCAACAAACAACTTAAC 59.211 43.478 0.00 0.00 0.00 2.01
151 152 3.033185 CTCGGCAACAAACAACTTAACG 58.967 45.455 0.00 0.00 0.00 3.18
152 153 2.676839 TCGGCAACAAACAACTTAACGA 59.323 40.909 0.00 0.00 0.00 3.85
153 154 3.033185 CGGCAACAAACAACTTAACGAG 58.967 45.455 0.00 0.00 0.00 4.18
154 155 2.787129 GGCAACAAACAACTTAACGAGC 59.213 45.455 0.00 0.00 0.00 5.03
155 156 3.488553 GGCAACAAACAACTTAACGAGCT 60.489 43.478 0.00 0.00 0.00 4.09
156 157 4.260866 GGCAACAAACAACTTAACGAGCTA 60.261 41.667 0.00 0.00 0.00 3.32
157 158 5.267776 GCAACAAACAACTTAACGAGCTAA 58.732 37.500 0.00 0.00 0.00 3.09
172 173 2.086869 AGCTAAGCATGCGTCACAAAT 58.913 42.857 10.11 0.00 35.28 2.32
227 228 3.853330 CACGTCCTTGCATCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
293 294 1.518572 CCCCACGTCTCCGATTTCG 60.519 63.158 0.00 0.00 37.88 3.46
345 347 7.921786 TGGACTTCAATAAATACTCCAACAG 57.078 36.000 0.00 0.00 0.00 3.16
364 366 2.539338 GCGACGTGCCACCTGAAAA 61.539 57.895 0.00 0.00 37.76 2.29
367 369 1.127951 CGACGTGCCACCTGAAAATAC 59.872 52.381 0.00 0.00 0.00 1.89
374 376 5.296748 GTGCCACCTGAAAATACAAACATT 58.703 37.500 0.00 0.00 0.00 2.71
382 384 9.723601 ACCTGAAAATACAAACATTGCAATAAT 57.276 25.926 12.53 0.00 0.00 1.28
389 391 8.940768 ATACAAACATTGCAATAATAACCCAC 57.059 30.769 12.53 0.00 0.00 4.61
402 404 4.760047 CCCACTGCCGAGTTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
419 421 1.543802 CCCGAAAATTGCCAAGCAGTA 59.456 47.619 0.00 0.00 40.61 2.74
446 448 1.625616 CCGAGTACCAAACGCACTAG 58.374 55.000 0.00 0.00 0.00 2.57
469 471 0.532573 CTGGACATGTCTACGCCTGT 59.467 55.000 24.50 0.00 0.00 4.00
480 484 0.250510 TACGCCTGTGCAAACATCCA 60.251 50.000 0.00 0.00 37.32 3.41
499 503 2.412770 CCAAAGATCAAACGCAATTGCC 59.587 45.455 24.24 8.57 37.91 4.52
517 521 1.467678 CCTCTGGAGCAGTATCCGGG 61.468 65.000 0.00 0.00 44.66 5.73
669 681 1.737236 TGAGATTCGCGAATTGGTTGG 59.263 47.619 32.89 0.00 0.00 3.77
670 682 1.737793 GAGATTCGCGAATTGGTTGGT 59.262 47.619 32.89 11.49 0.00 3.67
671 683 2.159382 AGATTCGCGAATTGGTTGGTT 58.841 42.857 32.89 10.71 0.00 3.67
672 684 2.095263 AGATTCGCGAATTGGTTGGTTG 60.095 45.455 32.89 0.00 0.00 3.77
690 702 0.770499 TGGATGAACCCAACAGCAGA 59.230 50.000 0.00 0.00 38.00 4.26
691 703 1.271543 TGGATGAACCCAACAGCAGAG 60.272 52.381 0.00 0.00 38.00 3.35
692 704 1.271597 GGATGAACCCAACAGCAGAGT 60.272 52.381 0.00 0.00 0.00 3.24
693 705 2.027192 GGATGAACCCAACAGCAGAGTA 60.027 50.000 0.00 0.00 0.00 2.59
696 708 4.098914 TGAACCCAACAGCAGAGTAAAT 57.901 40.909 0.00 0.00 0.00 1.40
697 709 5.235850 TGAACCCAACAGCAGAGTAAATA 57.764 39.130 0.00 0.00 0.00 1.40
700 712 6.719370 TGAACCCAACAGCAGAGTAAATAAAT 59.281 34.615 0.00 0.00 0.00 1.40
701 713 6.515272 ACCCAACAGCAGAGTAAATAAATG 57.485 37.500 0.00 0.00 0.00 2.32
702 714 6.245408 ACCCAACAGCAGAGTAAATAAATGA 58.755 36.000 0.00 0.00 0.00 2.57
703 715 6.719370 ACCCAACAGCAGAGTAAATAAATGAA 59.281 34.615 0.00 0.00 0.00 2.57
704 716 7.029563 CCCAACAGCAGAGTAAATAAATGAAC 58.970 38.462 0.00 0.00 0.00 3.18
705 717 7.029563 CCAACAGCAGAGTAAATAAATGAACC 58.970 38.462 0.00 0.00 0.00 3.62
706 718 6.422776 ACAGCAGAGTAAATAAATGAACCG 57.577 37.500 0.00 0.00 0.00 4.44
743 755 1.669115 GGCTGCTCAAGAACTGCGA 60.669 57.895 0.00 0.00 0.00 5.10
744 756 1.230635 GGCTGCTCAAGAACTGCGAA 61.231 55.000 0.00 0.00 0.00 4.70
892 914 1.789078 AAGCGCACAACCAGCAGAAG 61.789 55.000 11.47 0.00 0.00 2.85
1032 1054 1.752694 AGCTCCTCTCGTCCTGCTC 60.753 63.158 0.00 0.00 0.00 4.26
1045 1076 0.108424 CCTGCTCCTCTTCTTCGTGG 60.108 60.000 0.00 0.00 0.00 4.94
1046 1077 0.739112 CTGCTCCTCTTCTTCGTGGC 60.739 60.000 0.00 0.00 0.00 5.01
1086 1126 0.736325 ATGCGTCAGGTGCGTAACTC 60.736 55.000 0.00 0.00 34.24 3.01
1092 1132 0.892755 CAGGTGCGTAACTCCCTACA 59.107 55.000 0.00 0.00 31.89 2.74
1106 1146 1.403780 CCCTACACGTCTTCCTTTCCG 60.404 57.143 0.00 0.00 0.00 4.30
1112 1152 1.269166 CGTCTTCCTTTCCGTCGATG 58.731 55.000 0.00 0.00 0.00 3.84
1154 1223 1.282653 TGTGACTTTGGTGGGTGGGA 61.283 55.000 0.00 0.00 0.00 4.37
1171 1240 4.783621 ATCATGTGCAGCGGCGGT 62.784 61.111 5.44 5.44 45.35 5.68
1309 1378 1.255667 TACTGGGCCGTGAGTTCTCC 61.256 60.000 10.60 0.00 0.00 3.71
1360 1429 3.955429 CGCAGTCGGTGAAATTCAG 57.045 52.632 0.00 0.00 0.00 3.02
1361 1430 1.148310 CGCAGTCGGTGAAATTCAGT 58.852 50.000 0.00 0.00 0.00 3.41
1362 1431 1.126846 CGCAGTCGGTGAAATTCAGTC 59.873 52.381 0.00 0.00 0.00 3.51
1363 1432 1.464997 GCAGTCGGTGAAATTCAGTCC 59.535 52.381 0.00 0.00 0.00 3.85
1364 1433 1.726791 CAGTCGGTGAAATTCAGTCCG 59.273 52.381 16.05 16.05 37.37 4.79
1371 1443 1.731709 TGAAATTCAGTCCGTGATGCG 59.268 47.619 0.00 0.00 34.17 4.73
1380 1452 2.322081 CCGTGATGCGTTCCGGTTT 61.322 57.895 0.00 0.00 39.32 3.27
1613 1685 1.563111 CCGCCGCGTAATTCTCTTTA 58.437 50.000 12.58 0.00 0.00 1.85
1614 1686 1.928503 CCGCCGCGTAATTCTCTTTAA 59.071 47.619 12.58 0.00 0.00 1.52
1623 1695 5.050972 GCGTAATTCTCTTTAACCCGATCAG 60.051 44.000 0.00 0.00 0.00 2.90
1624 1696 6.040878 CGTAATTCTCTTTAACCCGATCAGT 58.959 40.000 0.00 0.00 0.00 3.41
1626 1698 7.064253 CGTAATTCTCTTTAACCCGATCAGTTT 59.936 37.037 3.66 0.00 0.00 2.66
1672 1744 4.753662 ACCACCGCCGCTCTCCTA 62.754 66.667 0.00 0.00 0.00 2.94
1697 1772 2.972505 CAGGCTTCGGTGCGTGTT 60.973 61.111 12.60 0.00 41.95 3.32
1700 1775 3.335534 GCTTCGGTGCGTGTTCGT 61.336 61.111 0.00 0.00 39.49 3.85
1783 1858 1.211190 GACGGTGGACTACGTGGTC 59.789 63.158 22.55 22.55 44.24 4.02
2026 2101 3.271055 ACAACAGTACCCGTTTGTTCT 57.729 42.857 0.00 0.00 33.06 3.01
2053 2128 7.153985 TGCCTGAAATTTCAAGAAACTTATGG 58.846 34.615 20.82 14.79 36.64 2.74
2087 2162 2.607771 CCAAAATGAAGAACCACCGCAG 60.608 50.000 0.00 0.00 0.00 5.18
2089 2164 2.270352 AATGAAGAACCACCGCAGAA 57.730 45.000 0.00 0.00 0.00 3.02
2090 2165 2.270352 ATGAAGAACCACCGCAGAAA 57.730 45.000 0.00 0.00 0.00 2.52
2093 2168 2.955660 TGAAGAACCACCGCAGAAAAAT 59.044 40.909 0.00 0.00 0.00 1.82
2094 2169 3.004315 TGAAGAACCACCGCAGAAAAATC 59.996 43.478 0.00 0.00 0.00 2.17
2097 2172 1.981256 ACCACCGCAGAAAAATCAGT 58.019 45.000 0.00 0.00 0.00 3.41
2098 2173 3.134574 ACCACCGCAGAAAAATCAGTA 57.865 42.857 0.00 0.00 0.00 2.74
2099 2174 3.074412 ACCACCGCAGAAAAATCAGTAG 58.926 45.455 0.00 0.00 0.00 2.57
2100 2175 3.074412 CCACCGCAGAAAAATCAGTAGT 58.926 45.455 0.00 0.00 0.00 2.73
2101 2176 3.502211 CCACCGCAGAAAAATCAGTAGTT 59.498 43.478 0.00 0.00 0.00 2.24
2102 2177 4.378459 CCACCGCAGAAAAATCAGTAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
2103 2178 3.432252 ACCGCAGAAAAATCAGTAGTTCG 59.568 43.478 0.00 0.00 0.00 3.95
2104 2179 3.432252 CCGCAGAAAAATCAGTAGTTCGT 59.568 43.478 0.00 0.00 0.00 3.85
2105 2180 4.624024 CCGCAGAAAAATCAGTAGTTCGTA 59.376 41.667 0.00 0.00 0.00 3.43
2106 2181 5.220228 CCGCAGAAAAATCAGTAGTTCGTAG 60.220 44.000 0.00 0.00 0.00 3.51
2107 2182 5.571741 CGCAGAAAAATCAGTAGTTCGTAGA 59.428 40.000 0.00 0.00 0.00 2.59
2108 2183 6.253727 CGCAGAAAAATCAGTAGTTCGTAGAT 59.746 38.462 0.00 0.00 35.04 1.98
2109 2184 7.201444 CGCAGAAAAATCAGTAGTTCGTAGATT 60.201 37.037 0.00 0.00 35.04 2.40
2110 2185 8.443937 GCAGAAAAATCAGTAGTTCGTAGATTT 58.556 33.333 0.00 0.00 39.74 2.17
2116 2191 9.583765 AAATCAGTAGTTCGTAGATTTCCTAAC 57.416 33.333 0.00 0.00 34.78 2.34
2125 2200 7.781548 TCGTAGATTTCCTAACTAATTTGCC 57.218 36.000 0.00 0.00 0.00 4.52
2127 2202 6.257193 CGTAGATTTCCTAACTAATTTGCCGT 59.743 38.462 0.00 0.00 0.00 5.68
2131 2206 1.329599 CCTAACTAATTTGCCGTCGCC 59.670 52.381 0.00 0.00 0.00 5.54
2223 2298 2.740981 CAGCACTGGTCACTGAATCTTC 59.259 50.000 0.00 0.00 33.10 2.87
2254 2330 0.528466 TATTCTGCTTCCGCTGCGAG 60.528 55.000 25.45 15.03 36.97 5.03
2267 2343 2.492012 GCTGCGAGGAAATGATCTGAT 58.508 47.619 0.00 0.00 0.00 2.90
2273 2349 4.210955 GCGAGGAAATGATCTGATGAACTC 59.789 45.833 0.00 0.00 0.00 3.01
2376 2469 3.995048 GTGAGACTTGGGTGTTAAGCTAC 59.005 47.826 0.00 0.00 0.00 3.58
2377 2470 3.251571 GAGACTTGGGTGTTAAGCTACG 58.748 50.000 0.00 0.00 0.00 3.51
2378 2471 2.028385 AGACTTGGGTGTTAAGCTACGG 60.028 50.000 0.00 0.00 0.00 4.02
2379 2472 1.695788 ACTTGGGTGTTAAGCTACGGT 59.304 47.619 0.00 0.00 0.00 4.83
2380 2473 2.899256 ACTTGGGTGTTAAGCTACGGTA 59.101 45.455 0.00 0.00 0.00 4.02
2396 2492 1.699343 GGTAGCACGTCTGACTGTTC 58.301 55.000 6.21 0.89 0.00 3.18
2397 2493 1.328439 GTAGCACGTCTGACTGTTCG 58.672 55.000 6.21 0.00 0.00 3.95
2398 2494 0.949397 TAGCACGTCTGACTGTTCGT 59.051 50.000 6.21 0.00 36.99 3.85
2399 2495 0.317938 AGCACGTCTGACTGTTCGTC 60.318 55.000 6.21 0.00 43.14 4.20
2512 2619 2.904866 GCGCCACCAACCTCAACA 60.905 61.111 0.00 0.00 0.00 3.33
2514 2621 0.958382 GCGCCACCAACCTCAACATA 60.958 55.000 0.00 0.00 0.00 2.29
2515 2622 1.086696 CGCCACCAACCTCAACATAG 58.913 55.000 0.00 0.00 0.00 2.23
2516 2623 0.811281 GCCACCAACCTCAACATAGC 59.189 55.000 0.00 0.00 0.00 2.97
2518 2625 2.359900 CCACCAACCTCAACATAGCTC 58.640 52.381 0.00 0.00 0.00 4.09
2519 2626 2.290260 CCACCAACCTCAACATAGCTCA 60.290 50.000 0.00 0.00 0.00 4.26
3445 3562 3.441572 ACTGCCAGATTGCATTAACAGTC 59.558 43.478 0.00 0.00 41.16 3.51
3460 3577 7.954248 GCATTAACAGTCTTGAATATGATAGCG 59.046 37.037 0.00 0.00 0.00 4.26
3473 3590 3.013276 TGATAGCGAGGCACTAATTCG 57.987 47.619 0.00 0.00 41.55 3.34
3479 3596 3.119245 AGCGAGGCACTAATTCGAACTTA 60.119 43.478 0.00 0.13 41.55 2.24
3486 3603 5.077424 GCACTAATTCGAACTTAAACCGTG 58.923 41.667 0.00 6.56 0.00 4.94
3487 3604 5.107375 GCACTAATTCGAACTTAAACCGTGA 60.107 40.000 0.00 0.00 0.00 4.35
3488 3605 6.564499 GCACTAATTCGAACTTAAACCGTGAA 60.564 38.462 0.00 0.00 0.00 3.18
3489 3606 7.346695 CACTAATTCGAACTTAAACCGTGAAA 58.653 34.615 0.00 0.00 0.00 2.69
3490 3607 8.013378 CACTAATTCGAACTTAAACCGTGAAAT 58.987 33.333 0.00 0.00 0.00 2.17
3491 3608 8.013378 ACTAATTCGAACTTAAACCGTGAAATG 58.987 33.333 0.00 0.00 0.00 2.32
3502 3619 1.006832 CGTGAAATGGATCGGTCACC 58.993 55.000 0.00 0.00 37.66 4.02
3503 3620 1.405526 CGTGAAATGGATCGGTCACCT 60.406 52.381 0.00 0.00 37.66 4.00
3504 3621 2.009774 GTGAAATGGATCGGTCACCTG 58.990 52.381 0.00 0.00 35.42 4.00
3505 3622 1.017387 GAAATGGATCGGTCACCTGC 58.983 55.000 0.00 0.00 0.00 4.85
3506 3623 0.327924 AAATGGATCGGTCACCTGCA 59.672 50.000 0.00 0.00 0.00 4.41
3609 3747 9.159364 ACAAAATAGTAAATCGGAACCTAGAAC 57.841 33.333 0.00 0.00 0.00 3.01
3635 3773 0.895530 CGACAGCAAGAGGAACCCTA 59.104 55.000 0.00 0.00 31.76 3.53
3646 3784 1.121378 GGAACCCTAGCACTACTCCC 58.879 60.000 0.00 0.00 0.00 4.30
3647 3785 1.621622 GGAACCCTAGCACTACTCCCA 60.622 57.143 0.00 0.00 0.00 4.37
3648 3786 2.399580 GAACCCTAGCACTACTCCCAT 58.600 52.381 0.00 0.00 0.00 4.00
3649 3787 1.794714 ACCCTAGCACTACTCCCATG 58.205 55.000 0.00 0.00 0.00 3.66
3650 3788 1.008449 ACCCTAGCACTACTCCCATGT 59.992 52.381 0.00 0.00 0.00 3.21
3651 3789 1.689273 CCCTAGCACTACTCCCATGTC 59.311 57.143 0.00 0.00 0.00 3.06
3652 3790 1.338337 CCTAGCACTACTCCCATGTCG 59.662 57.143 0.00 0.00 0.00 4.35
3653 3791 0.744874 TAGCACTACTCCCATGTCGC 59.255 55.000 0.00 0.00 0.00 5.19
3654 3792 0.972983 AGCACTACTCCCATGTCGCT 60.973 55.000 0.00 0.00 0.00 4.93
3655 3793 0.807667 GCACTACTCCCATGTCGCTG 60.808 60.000 0.00 0.00 0.00 5.18
3656 3794 0.817654 CACTACTCCCATGTCGCTGA 59.182 55.000 0.00 0.00 0.00 4.26
3657 3795 1.410517 CACTACTCCCATGTCGCTGAT 59.589 52.381 0.00 0.00 0.00 2.90
3658 3796 2.111384 ACTACTCCCATGTCGCTGATT 58.889 47.619 0.00 0.00 0.00 2.57
3659 3797 2.501723 ACTACTCCCATGTCGCTGATTT 59.498 45.455 0.00 0.00 0.00 2.17
3660 3798 3.704566 ACTACTCCCATGTCGCTGATTTA 59.295 43.478 0.00 0.00 0.00 1.40
3661 3799 3.185246 ACTCCCATGTCGCTGATTTAG 57.815 47.619 0.00 0.00 0.00 1.85
3662 3800 2.501723 ACTCCCATGTCGCTGATTTAGT 59.498 45.455 0.00 0.00 0.00 2.24
3663 3801 3.704566 ACTCCCATGTCGCTGATTTAGTA 59.295 43.478 0.00 0.00 0.00 1.82
3664 3802 4.345257 ACTCCCATGTCGCTGATTTAGTAT 59.655 41.667 0.00 0.00 0.00 2.12
3665 3803 5.163301 ACTCCCATGTCGCTGATTTAGTATT 60.163 40.000 0.00 0.00 0.00 1.89
3666 3804 5.680619 TCCCATGTCGCTGATTTAGTATTT 58.319 37.500 0.00 0.00 0.00 1.40
3667 3805 6.119536 TCCCATGTCGCTGATTTAGTATTTT 58.880 36.000 0.00 0.00 0.00 1.82
3668 3806 6.038161 TCCCATGTCGCTGATTTAGTATTTTG 59.962 38.462 0.00 0.00 0.00 2.44
3669 3807 6.201517 CCATGTCGCTGATTTAGTATTTTGG 58.798 40.000 0.00 0.00 0.00 3.28
3670 3808 5.811399 TGTCGCTGATTTAGTATTTTGGG 57.189 39.130 0.00 0.00 0.00 4.12
3671 3809 5.492895 TGTCGCTGATTTAGTATTTTGGGA 58.507 37.500 0.00 0.00 0.00 4.37
3672 3810 5.353123 TGTCGCTGATTTAGTATTTTGGGAC 59.647 40.000 0.00 0.00 36.91 4.46
3673 3811 4.569162 TCGCTGATTTAGTATTTTGGGACG 59.431 41.667 0.00 0.00 0.00 4.79
3674 3812 4.260620 CGCTGATTTAGTATTTTGGGACGG 60.261 45.833 0.00 0.00 0.00 4.79
3675 3813 4.036380 GCTGATTTAGTATTTTGGGACGGG 59.964 45.833 0.00 0.00 0.00 5.28
3676 3814 5.433526 CTGATTTAGTATTTTGGGACGGGA 58.566 41.667 0.00 0.00 0.00 5.14
3677 3815 5.817784 TGATTTAGTATTTTGGGACGGGAA 58.182 37.500 0.00 0.00 0.00 3.97
3678 3816 5.648960 TGATTTAGTATTTTGGGACGGGAAC 59.351 40.000 0.00 0.00 0.00 3.62
3679 3817 4.914177 TTAGTATTTTGGGACGGGAACT 57.086 40.909 0.00 0.00 0.00 3.01
3680 3818 6.371595 TTTAGTATTTTGGGACGGGAACTA 57.628 37.500 0.00 0.00 0.00 2.24
3681 3819 4.914177 AGTATTTTGGGACGGGAACTAA 57.086 40.909 0.00 0.00 0.00 2.24
3682 3820 5.245584 AGTATTTTGGGACGGGAACTAAA 57.754 39.130 0.00 0.00 0.00 1.85
3683 3821 5.005740 AGTATTTTGGGACGGGAACTAAAC 58.994 41.667 0.00 0.00 0.00 2.01
3684 3822 2.275134 TTTGGGACGGGAACTAAACC 57.725 50.000 0.00 0.00 0.00 3.27
3685 3823 1.437397 TTGGGACGGGAACTAAACCT 58.563 50.000 0.00 0.00 0.00 3.50
3686 3824 2.323999 TGGGACGGGAACTAAACCTA 57.676 50.000 0.00 0.00 0.00 3.08
3687 3825 2.836667 TGGGACGGGAACTAAACCTAT 58.163 47.619 0.00 0.00 0.00 2.57
3688 3826 3.183801 TGGGACGGGAACTAAACCTATT 58.816 45.455 0.00 0.00 0.00 1.73
3689 3827 3.588396 TGGGACGGGAACTAAACCTATTT 59.412 43.478 0.00 0.00 0.00 1.40
3690 3828 4.043184 TGGGACGGGAACTAAACCTATTTT 59.957 41.667 0.00 0.00 0.00 1.82
3691 3829 4.637534 GGGACGGGAACTAAACCTATTTTC 59.362 45.833 0.00 0.00 0.00 2.29
3692 3830 4.637534 GGACGGGAACTAAACCTATTTTCC 59.362 45.833 0.00 0.00 0.00 3.13
3693 3831 5.494724 GACGGGAACTAAACCTATTTTCCT 58.505 41.667 0.00 0.00 0.00 3.36
3694 3832 5.884322 ACGGGAACTAAACCTATTTTCCTT 58.116 37.500 0.00 0.00 0.00 3.36
3695 3833 6.309357 ACGGGAACTAAACCTATTTTCCTTT 58.691 36.000 0.00 0.00 0.00 3.11
3696 3834 7.460910 ACGGGAACTAAACCTATTTTCCTTTA 58.539 34.615 0.00 0.00 0.00 1.85
3697 3835 8.111545 ACGGGAACTAAACCTATTTTCCTTTAT 58.888 33.333 0.00 0.00 0.00 1.40
3698 3836 8.963725 CGGGAACTAAACCTATTTTCCTTTATT 58.036 33.333 0.00 0.00 0.00 1.40
3706 3844 9.772973 AAACCTATTTTCCTTTATTCCAAACAC 57.227 29.630 0.00 0.00 0.00 3.32
3707 3845 7.599171 ACCTATTTTCCTTTATTCCAAACACG 58.401 34.615 0.00 0.00 0.00 4.49
3708 3846 7.033185 CCTATTTTCCTTTATTCCAAACACGG 58.967 38.462 0.00 0.00 0.00 4.94
3709 3847 6.658188 ATTTTCCTTTATTCCAAACACGGA 57.342 33.333 0.00 0.00 0.00 4.69
4087 4234 0.326927 GGAACTTCGGAATGGGGTGA 59.673 55.000 0.00 0.00 0.00 4.02
4181 4330 3.480133 CCCGCTTCTCCCCCGATT 61.480 66.667 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.143340 GCATGTTAGTGTTAGACATATCCGTA 58.857 38.462 0.00 0.00 33.03 4.02
1 2 5.983720 GCATGTTAGTGTTAGACATATCCGT 59.016 40.000 0.00 0.00 33.03 4.69
2 3 5.117135 CGCATGTTAGTGTTAGACATATCCG 59.883 44.000 0.00 0.00 33.03 4.18
3 4 6.144080 GTCGCATGTTAGTGTTAGACATATCC 59.856 42.308 0.00 0.00 33.03 2.59
4 5 6.918569 AGTCGCATGTTAGTGTTAGACATATC 59.081 38.462 0.00 0.00 33.03 1.63
5 6 6.806751 AGTCGCATGTTAGTGTTAGACATAT 58.193 36.000 0.00 0.00 33.03 1.78
6 7 6.203808 AGTCGCATGTTAGTGTTAGACATA 57.796 37.500 0.00 0.00 33.03 2.29
7 8 5.073311 AGTCGCATGTTAGTGTTAGACAT 57.927 39.130 0.00 0.00 34.52 3.06
8 9 4.514781 AGTCGCATGTTAGTGTTAGACA 57.485 40.909 0.00 0.00 0.00 3.41
9 10 5.877031 TCTAGTCGCATGTTAGTGTTAGAC 58.123 41.667 0.00 0.00 0.00 2.59
10 11 6.694877 ATCTAGTCGCATGTTAGTGTTAGA 57.305 37.500 0.00 0.00 0.00 2.10
11 12 7.415229 TGTATCTAGTCGCATGTTAGTGTTAG 58.585 38.462 0.00 0.00 0.00 2.34
12 13 7.324354 TGTATCTAGTCGCATGTTAGTGTTA 57.676 36.000 0.00 0.00 0.00 2.41
13 14 6.203808 TGTATCTAGTCGCATGTTAGTGTT 57.796 37.500 0.00 0.00 0.00 3.32
14 15 5.830000 TGTATCTAGTCGCATGTTAGTGT 57.170 39.130 0.00 0.00 0.00 3.55
15 16 6.086896 CGAATGTATCTAGTCGCATGTTAGTG 59.913 42.308 0.00 0.00 31.30 2.74
16 17 6.143496 CGAATGTATCTAGTCGCATGTTAGT 58.857 40.000 0.00 0.00 31.30 2.24
17 18 6.143496 ACGAATGTATCTAGTCGCATGTTAG 58.857 40.000 0.00 0.00 41.35 2.34
18 19 6.068473 ACGAATGTATCTAGTCGCATGTTA 57.932 37.500 0.00 0.00 41.35 2.41
19 20 4.933330 ACGAATGTATCTAGTCGCATGTT 58.067 39.130 0.00 0.00 41.35 2.71
20 21 4.569761 ACGAATGTATCTAGTCGCATGT 57.430 40.909 0.00 0.00 41.35 3.21
21 22 5.215903 AGAACGAATGTATCTAGTCGCATG 58.784 41.667 0.00 0.00 41.35 4.06
22 23 5.440234 AGAACGAATGTATCTAGTCGCAT 57.560 39.130 0.00 0.00 41.35 4.73
23 24 4.895224 AGAACGAATGTATCTAGTCGCA 57.105 40.909 0.00 0.00 41.35 5.10
24 25 6.690098 TGTTTAGAACGAATGTATCTAGTCGC 59.310 38.462 0.00 0.00 41.35 5.19
25 26 8.610855 TTGTTTAGAACGAATGTATCTAGTCG 57.389 34.615 0.00 0.00 43.06 4.18
29 30 9.791820 TCGATTTGTTTAGAACGAATGTATCTA 57.208 29.630 10.22 0.00 43.75 1.98
30 31 8.697846 TCGATTTGTTTAGAACGAATGTATCT 57.302 30.769 10.22 0.00 43.75 1.98
31 32 9.409949 CTTCGATTTGTTTAGAACGAATGTATC 57.590 33.333 10.22 0.00 43.75 2.24
32 33 9.146984 TCTTCGATTTGTTTAGAACGAATGTAT 57.853 29.630 10.22 0.00 43.75 2.29
33 34 8.430063 GTCTTCGATTTGTTTAGAACGAATGTA 58.570 33.333 10.22 0.00 43.75 2.29
34 35 7.042321 TGTCTTCGATTTGTTTAGAACGAATGT 60.042 33.333 10.22 0.00 43.75 2.71
35 36 7.287950 TGTCTTCGATTTGTTTAGAACGAATG 58.712 34.615 10.22 4.74 43.75 2.67
36 37 7.416154 TGTCTTCGATTTGTTTAGAACGAAT 57.584 32.000 6.09 6.09 45.80 3.34
37 38 6.831727 TGTCTTCGATTTGTTTAGAACGAA 57.168 33.333 0.00 0.00 39.02 3.85
38 39 6.698329 TCTTGTCTTCGATTTGTTTAGAACGA 59.302 34.615 0.00 0.00 0.00 3.85
39 40 6.873656 TCTTGTCTTCGATTTGTTTAGAACG 58.126 36.000 0.00 0.00 0.00 3.95
40 41 9.665264 AATTCTTGTCTTCGATTTGTTTAGAAC 57.335 29.630 0.00 0.00 0.00 3.01
45 46 8.925161 TCAAAATTCTTGTCTTCGATTTGTTT 57.075 26.923 0.00 0.00 0.00 2.83
46 47 8.405531 TCTCAAAATTCTTGTCTTCGATTTGTT 58.594 29.630 0.00 0.00 0.00 2.83
47 48 7.930217 TCTCAAAATTCTTGTCTTCGATTTGT 58.070 30.769 0.00 0.00 0.00 2.83
48 49 7.536622 CCTCTCAAAATTCTTGTCTTCGATTTG 59.463 37.037 0.00 0.00 0.00 2.32
49 50 7.308830 CCCTCTCAAAATTCTTGTCTTCGATTT 60.309 37.037 0.00 0.00 0.00 2.17
50 51 6.150140 CCCTCTCAAAATTCTTGTCTTCGATT 59.850 38.462 0.00 0.00 0.00 3.34
51 52 5.645497 CCCTCTCAAAATTCTTGTCTTCGAT 59.355 40.000 0.00 0.00 0.00 3.59
52 53 4.997395 CCCTCTCAAAATTCTTGTCTTCGA 59.003 41.667 0.00 0.00 0.00 3.71
53 54 4.997395 TCCCTCTCAAAATTCTTGTCTTCG 59.003 41.667 0.00 0.00 0.00 3.79
54 55 6.127786 CCATCCCTCTCAAAATTCTTGTCTTC 60.128 42.308 0.00 0.00 0.00 2.87
55 56 5.713861 CCATCCCTCTCAAAATTCTTGTCTT 59.286 40.000 0.00 0.00 0.00 3.01
56 57 5.014544 TCCATCCCTCTCAAAATTCTTGTCT 59.985 40.000 0.00 0.00 0.00 3.41
57 58 5.256474 TCCATCCCTCTCAAAATTCTTGTC 58.744 41.667 0.00 0.00 0.00 3.18
58 59 5.222213 ACTCCATCCCTCTCAAAATTCTTGT 60.222 40.000 0.00 0.00 0.00 3.16
59 60 5.259632 ACTCCATCCCTCTCAAAATTCTTG 58.740 41.667 0.00 0.00 0.00 3.02
60 61 5.527026 ACTCCATCCCTCTCAAAATTCTT 57.473 39.130 0.00 0.00 0.00 2.52
61 62 5.728741 ACTACTCCATCCCTCTCAAAATTCT 59.271 40.000 0.00 0.00 0.00 2.40
62 63 5.995446 ACTACTCCATCCCTCTCAAAATTC 58.005 41.667 0.00 0.00 0.00 2.17
63 64 6.903534 TCTACTACTCCATCCCTCTCAAAATT 59.096 38.462 0.00 0.00 0.00 1.82
64 65 6.444704 TCTACTACTCCATCCCTCTCAAAAT 58.555 40.000 0.00 0.00 0.00 1.82
65 66 5.838955 TCTACTACTCCATCCCTCTCAAAA 58.161 41.667 0.00 0.00 0.00 2.44
66 67 5.467668 TCTACTACTCCATCCCTCTCAAA 57.532 43.478 0.00 0.00 0.00 2.69
67 68 5.467668 TTCTACTACTCCATCCCTCTCAA 57.532 43.478 0.00 0.00 0.00 3.02
68 69 5.671463 ATTCTACTACTCCATCCCTCTCA 57.329 43.478 0.00 0.00 0.00 3.27
69 70 5.279256 GCAATTCTACTACTCCATCCCTCTC 60.279 48.000 0.00 0.00 0.00 3.20
70 71 4.591072 GCAATTCTACTACTCCATCCCTCT 59.409 45.833 0.00 0.00 0.00 3.69
71 72 4.559704 CGCAATTCTACTACTCCATCCCTC 60.560 50.000 0.00 0.00 0.00 4.30
72 73 3.322254 CGCAATTCTACTACTCCATCCCT 59.678 47.826 0.00 0.00 0.00 4.20
73 74 3.654414 CGCAATTCTACTACTCCATCCC 58.346 50.000 0.00 0.00 0.00 3.85
74 75 3.060602 GCGCAATTCTACTACTCCATCC 58.939 50.000 0.30 0.00 0.00 3.51
75 76 3.983741 AGCGCAATTCTACTACTCCATC 58.016 45.455 11.47 0.00 0.00 3.51
76 77 4.408182 AAGCGCAATTCTACTACTCCAT 57.592 40.909 11.47 0.00 0.00 3.41
77 78 3.887621 AAGCGCAATTCTACTACTCCA 57.112 42.857 11.47 0.00 0.00 3.86
78 79 5.547181 AAAAAGCGCAATTCTACTACTCC 57.453 39.130 11.47 0.00 0.00 3.85
120 121 4.082679 TGTTTGTTGCCGAGTGTAGTTTTT 60.083 37.500 0.00 0.00 0.00 1.94
121 122 3.440872 TGTTTGTTGCCGAGTGTAGTTTT 59.559 39.130 0.00 0.00 0.00 2.43
122 123 3.011119 TGTTTGTTGCCGAGTGTAGTTT 58.989 40.909 0.00 0.00 0.00 2.66
123 124 2.634600 TGTTTGTTGCCGAGTGTAGTT 58.365 42.857 0.00 0.00 0.00 2.24
124 125 2.319136 TGTTTGTTGCCGAGTGTAGT 57.681 45.000 0.00 0.00 0.00 2.73
125 126 2.612212 AGTTGTTTGTTGCCGAGTGTAG 59.388 45.455 0.00 0.00 0.00 2.74
126 127 2.634600 AGTTGTTTGTTGCCGAGTGTA 58.365 42.857 0.00 0.00 0.00 2.90
127 128 1.459450 AGTTGTTTGTTGCCGAGTGT 58.541 45.000 0.00 0.00 0.00 3.55
128 129 2.559998 AAGTTGTTTGTTGCCGAGTG 57.440 45.000 0.00 0.00 0.00 3.51
129 130 3.486209 CGTTAAGTTGTTTGTTGCCGAGT 60.486 43.478 0.00 0.00 0.00 4.18
130 131 3.033185 CGTTAAGTTGTTTGTTGCCGAG 58.967 45.455 0.00 0.00 0.00 4.63
131 132 2.676839 TCGTTAAGTTGTTTGTTGCCGA 59.323 40.909 0.00 0.00 0.00 5.54
132 133 3.033185 CTCGTTAAGTTGTTTGTTGCCG 58.967 45.455 0.00 0.00 0.00 5.69
133 134 2.787129 GCTCGTTAAGTTGTTTGTTGCC 59.213 45.455 0.00 0.00 0.00 4.52
134 135 3.691498 AGCTCGTTAAGTTGTTTGTTGC 58.309 40.909 0.00 0.00 0.00 4.17
135 136 5.395486 GCTTAGCTCGTTAAGTTGTTTGTTG 59.605 40.000 0.00 0.00 33.99 3.33
136 137 5.065474 TGCTTAGCTCGTTAAGTTGTTTGTT 59.935 36.000 5.60 0.00 33.99 2.83
137 138 4.573201 TGCTTAGCTCGTTAAGTTGTTTGT 59.427 37.500 5.60 0.00 33.99 2.83
138 139 5.090652 TGCTTAGCTCGTTAAGTTGTTTG 57.909 39.130 5.60 0.00 33.99 2.93
139 140 5.689819 CATGCTTAGCTCGTTAAGTTGTTT 58.310 37.500 5.60 0.00 33.99 2.83
140 141 4.378459 GCATGCTTAGCTCGTTAAGTTGTT 60.378 41.667 11.37 0.00 33.99 2.83
141 142 3.125316 GCATGCTTAGCTCGTTAAGTTGT 59.875 43.478 11.37 0.00 33.99 3.32
142 143 3.674423 GCATGCTTAGCTCGTTAAGTTG 58.326 45.455 11.37 0.00 33.99 3.16
143 144 2.348666 CGCATGCTTAGCTCGTTAAGTT 59.651 45.455 17.13 0.00 33.99 2.66
144 145 1.927174 CGCATGCTTAGCTCGTTAAGT 59.073 47.619 17.13 0.00 33.99 2.24
145 146 1.927174 ACGCATGCTTAGCTCGTTAAG 59.073 47.619 17.13 0.00 34.48 1.85
146 147 1.924524 GACGCATGCTTAGCTCGTTAA 59.075 47.619 17.13 0.00 32.59 2.01
147 148 1.135228 TGACGCATGCTTAGCTCGTTA 60.135 47.619 17.13 12.12 32.59 3.18
148 149 0.389817 TGACGCATGCTTAGCTCGTT 60.390 50.000 17.13 5.52 32.59 3.85
149 150 1.078759 GTGACGCATGCTTAGCTCGT 61.079 55.000 17.13 16.09 34.21 4.18
150 151 1.078201 TGTGACGCATGCTTAGCTCG 61.078 55.000 17.13 8.95 0.00 5.03
151 152 1.078709 TTGTGACGCATGCTTAGCTC 58.921 50.000 17.13 2.95 0.00 4.09
152 153 1.522668 TTTGTGACGCATGCTTAGCT 58.477 45.000 17.13 0.00 0.00 3.32
153 154 2.179589 CATTTGTGACGCATGCTTAGC 58.820 47.619 17.13 0.00 0.00 3.09
154 155 2.179589 GCATTTGTGACGCATGCTTAG 58.820 47.619 17.13 2.44 32.08 2.18
155 156 1.135431 GGCATTTGTGACGCATGCTTA 60.135 47.619 17.13 0.00 34.47 3.09
156 157 0.388907 GGCATTTGTGACGCATGCTT 60.389 50.000 17.13 6.17 34.47 3.91
157 158 1.213537 GGCATTTGTGACGCATGCT 59.786 52.632 17.13 2.38 34.47 3.79
293 294 2.746359 CATGATCTCCTCCGCCCC 59.254 66.667 0.00 0.00 0.00 5.80
297 298 1.006805 GACGGCATGATCTCCTCCG 60.007 63.158 0.00 12.35 45.04 4.63
364 366 8.757877 AGTGGGTTATTATTGCAATGTTTGTAT 58.242 29.630 22.27 7.90 0.00 2.29
367 369 6.183360 GCAGTGGGTTATTATTGCAATGTTTG 60.183 38.462 22.27 6.77 0.00 2.93
374 376 2.020720 CGGCAGTGGGTTATTATTGCA 58.979 47.619 0.00 0.00 33.42 4.08
382 384 1.675219 GGAACTCGGCAGTGGGTTA 59.325 57.895 0.00 0.00 31.06 2.85
383 385 2.430367 GGAACTCGGCAGTGGGTT 59.570 61.111 0.00 0.00 31.06 4.11
384 386 3.637273 GGGAACTCGGCAGTGGGT 61.637 66.667 0.00 0.00 31.06 4.51
385 387 4.760047 CGGGAACTCGGCAGTGGG 62.760 72.222 0.00 0.00 31.06 4.61
386 388 2.725203 TTTCGGGAACTCGGCAGTGG 62.725 60.000 0.00 0.00 31.06 4.00
389 391 1.135689 CAATTTTCGGGAACTCGGCAG 60.136 52.381 0.00 0.00 0.00 4.85
402 404 4.022849 ACTGAGTACTGCTTGGCAATTTTC 60.023 41.667 0.00 0.00 38.41 2.29
446 448 1.536284 GGCGTAGACATGTCCAGCTAC 60.536 57.143 26.19 19.25 31.66 3.58
469 471 4.297510 CGTTTGATCTTTGGATGTTTGCA 58.702 39.130 0.00 0.00 31.46 4.08
480 484 3.256631 AGAGGCAATTGCGTTTGATCTTT 59.743 39.130 25.04 7.36 43.26 2.52
499 503 0.468214 TCCCGGATACTGCTCCAGAG 60.468 60.000 0.73 0.00 34.78 3.35
517 521 2.252976 TGCTGGGTTTGGCATTTTTC 57.747 45.000 0.00 0.00 33.23 2.29
568 575 3.136641 AGGGCCTCTTCCAGAAGAATA 57.863 47.619 0.00 0.00 45.75 1.75
658 670 3.574614 GTTCATCCAACCAACCAATTCG 58.425 45.455 0.00 0.00 0.00 3.34
670 682 1.144708 TCTGCTGTTGGGTTCATCCAA 59.855 47.619 0.00 0.00 43.82 3.53
671 683 0.770499 TCTGCTGTTGGGTTCATCCA 59.230 50.000 0.00 0.00 38.11 3.41
672 684 1.271597 ACTCTGCTGTTGGGTTCATCC 60.272 52.381 0.00 0.00 0.00 3.51
693 705 7.700656 CGCTATTTCTTTCCGGTTCATTTATTT 59.299 33.333 0.00 0.00 0.00 1.40
696 708 5.644636 ACGCTATTTCTTTCCGGTTCATTTA 59.355 36.000 0.00 0.00 0.00 1.40
697 709 4.457949 ACGCTATTTCTTTCCGGTTCATTT 59.542 37.500 0.00 0.00 0.00 2.32
700 712 3.048337 ACGCTATTTCTTTCCGGTTCA 57.952 42.857 0.00 0.00 0.00 3.18
701 713 3.000376 CGTACGCTATTTCTTTCCGGTTC 60.000 47.826 0.52 0.00 0.00 3.62
702 714 2.925563 CGTACGCTATTTCTTTCCGGTT 59.074 45.455 0.52 0.00 0.00 4.44
703 715 2.533266 CGTACGCTATTTCTTTCCGGT 58.467 47.619 0.52 0.00 0.00 5.28
704 716 1.257155 GCGTACGCTATTTCTTTCCGG 59.743 52.381 31.95 0.00 38.26 5.14
705 717 1.072348 CGCGTACGCTATTTCTTTCCG 60.072 52.381 34.69 13.22 39.32 4.30
706 718 1.257155 CCGCGTACGCTATTTCTTTCC 59.743 52.381 34.69 4.92 39.32 3.13
715 727 4.547905 GAGCAGCCGCGTACGCTA 62.548 66.667 34.69 0.00 45.49 4.26
728 740 1.953559 AAGTTCGCAGTTCTTGAGCA 58.046 45.000 0.00 0.00 0.00 4.26
743 755 1.264288 CGCTTCTCGCAGGAAAAAGTT 59.736 47.619 0.00 0.00 39.08 2.66
744 756 0.868406 CGCTTCTCGCAGGAAAAAGT 59.132 50.000 0.00 0.00 39.08 2.66
1022 1044 1.178276 GAAGAAGAGGAGCAGGACGA 58.822 55.000 0.00 0.00 0.00 4.20
1032 1054 2.815647 GCGGCCACGAAGAAGAGG 60.816 66.667 2.24 0.00 44.60 3.69
1086 1126 1.403780 CGGAAAGGAAGACGTGTAGGG 60.404 57.143 0.00 0.00 0.00 3.53
1092 1132 0.886563 ATCGACGGAAAGGAAGACGT 59.113 50.000 0.00 0.00 42.88 4.34
1154 1223 4.783621 ACCGCCGCTGCACATGAT 62.784 61.111 0.00 0.00 37.32 2.45
1309 1378 5.634896 CAACGGATCAAGAATTTTCAGGAG 58.365 41.667 0.00 0.00 0.00 3.69
1350 1419 2.474526 CGCATCACGGACTGAATTTCAC 60.475 50.000 0.00 0.00 38.44 3.18
1371 1443 4.215613 ACAGCAGAATTTAGAAACCGGAAC 59.784 41.667 9.46 0.00 0.00 3.62
1380 1452 4.320202 GCGGAAACAACAGCAGAATTTAGA 60.320 41.667 0.00 0.00 0.00 2.10
1613 1685 2.332654 GCGGCAAACTGATCGGGTT 61.333 57.895 6.47 1.90 0.00 4.11
1614 1686 2.746277 GCGGCAAACTGATCGGGT 60.746 61.111 6.47 0.00 0.00 5.28
1623 1695 2.183858 GAGAGGAAACGGCGGCAAAC 62.184 60.000 13.24 0.00 0.00 2.93
1624 1696 1.964373 GAGAGGAAACGGCGGCAAA 60.964 57.895 13.24 0.00 0.00 3.68
1626 1698 4.388499 GGAGAGGAAACGGCGGCA 62.388 66.667 13.24 0.00 0.00 5.69
1672 1744 0.036306 CACCGAAGCCTGGTTAGGTT 59.964 55.000 10.57 0.00 46.41 3.50
1697 1772 2.741985 CCCGATGCTGCAACACGA 60.742 61.111 21.64 0.00 0.00 4.35
1721 1796 3.207354 CTGCCCGTCGTACAGGAT 58.793 61.111 4.30 0.00 0.00 3.24
1783 1858 3.414700 GTGTCGCCCGACTGCTTG 61.415 66.667 19.88 0.00 44.80 4.01
2026 2101 9.044150 CATAAGTTTCTTGAAATTTCAGGCAAA 57.956 29.630 21.96 18.74 38.61 3.68
2053 2128 6.700352 TCTTCATTTTGGGATGGAAATGTTC 58.300 36.000 8.21 0.00 41.61 3.18
2087 2162 9.152595 AGGAAATCTACGAACTACTGATTTTTC 57.847 33.333 0.00 0.00 37.44 2.29
2090 2165 9.583765 GTTAGGAAATCTACGAACTACTGATTT 57.416 33.333 0.00 0.00 39.22 2.17
2093 2168 7.934855 AGTTAGGAAATCTACGAACTACTGA 57.065 36.000 0.00 0.00 0.00 3.41
2098 2173 8.880750 GCAAATTAGTTAGGAAATCTACGAACT 58.119 33.333 0.00 0.00 0.00 3.01
2099 2174 8.121086 GGCAAATTAGTTAGGAAATCTACGAAC 58.879 37.037 0.00 0.00 0.00 3.95
2100 2175 7.010738 CGGCAAATTAGTTAGGAAATCTACGAA 59.989 37.037 0.00 0.00 0.00 3.85
2101 2176 6.477688 CGGCAAATTAGTTAGGAAATCTACGA 59.522 38.462 0.00 0.00 0.00 3.43
2102 2177 6.257193 ACGGCAAATTAGTTAGGAAATCTACG 59.743 38.462 0.00 0.00 0.00 3.51
2103 2178 7.516312 CGACGGCAAATTAGTTAGGAAATCTAC 60.516 40.741 0.00 0.00 0.00 2.59
2104 2179 6.477688 CGACGGCAAATTAGTTAGGAAATCTA 59.522 38.462 0.00 0.00 0.00 1.98
2105 2180 5.293569 CGACGGCAAATTAGTTAGGAAATCT 59.706 40.000 0.00 0.00 0.00 2.40
2106 2181 5.499047 CGACGGCAAATTAGTTAGGAAATC 58.501 41.667 0.00 0.00 0.00 2.17
2107 2182 4.201881 GCGACGGCAAATTAGTTAGGAAAT 60.202 41.667 0.00 0.00 39.62 2.17
2108 2183 3.125658 GCGACGGCAAATTAGTTAGGAAA 59.874 43.478 0.00 0.00 39.62 3.13
2109 2184 2.674357 GCGACGGCAAATTAGTTAGGAA 59.326 45.455 0.00 0.00 39.62 3.36
2110 2185 2.273557 GCGACGGCAAATTAGTTAGGA 58.726 47.619 0.00 0.00 39.62 2.94
2114 2189 1.084289 GAGGCGACGGCAAATTAGTT 58.916 50.000 24.23 0.00 42.47 2.24
2116 2191 1.636340 CGAGGCGACGGCAAATTAG 59.364 57.895 24.23 4.00 42.47 1.73
2125 2200 3.626680 TTCCTTCTGCGAGGCGACG 62.627 63.158 0.00 0.00 36.71 5.12
2127 2202 1.323271 ATCTTCCTTCTGCGAGGCGA 61.323 55.000 0.00 0.00 36.71 5.54
2254 2330 4.872691 ACACGAGTTCATCAGATCATTTCC 59.127 41.667 0.00 0.00 0.00 3.13
2267 2343 3.243737 ACACTGCAAGATACACGAGTTCA 60.244 43.478 0.00 0.00 37.43 3.18
2273 2349 2.342651 CGAGAACACTGCAAGATACACG 59.657 50.000 0.00 0.00 37.43 4.49
2376 2469 0.039437 AACAGTCAGACGTGCTACCG 60.039 55.000 0.00 0.00 0.00 4.02
2377 2470 1.699343 GAACAGTCAGACGTGCTACC 58.301 55.000 0.00 0.00 0.00 3.18
2378 2471 1.328439 CGAACAGTCAGACGTGCTAC 58.672 55.000 0.00 0.00 0.00 3.58
2379 2472 0.949397 ACGAACAGTCAGACGTGCTA 59.051 50.000 0.00 0.00 37.58 3.49
2380 2473 1.734137 ACGAACAGTCAGACGTGCT 59.266 52.632 0.00 0.00 37.58 4.40
2396 2492 2.176055 CAGACAGACGGACGGACG 59.824 66.667 0.00 0.00 40.31 4.79
2397 2493 2.126424 GCAGACAGACGGACGGAC 60.126 66.667 0.00 0.00 0.00 4.79
2398 2494 2.596338 TGCAGACAGACGGACGGA 60.596 61.111 0.00 0.00 0.00 4.69
2512 2619 2.493675 TCTTCTTGCGTGAGTGAGCTAT 59.506 45.455 0.00 0.00 0.00 2.97
2514 2621 0.676184 TCTTCTTGCGTGAGTGAGCT 59.324 50.000 0.00 0.00 0.00 4.09
2515 2622 1.458827 CTTCTTCTTGCGTGAGTGAGC 59.541 52.381 0.00 0.00 0.00 4.26
2516 2623 2.474359 CACTTCTTCTTGCGTGAGTGAG 59.526 50.000 0.00 0.00 0.00 3.51
2518 2625 1.070309 GCACTTCTTCTTGCGTGAGTG 60.070 52.381 0.00 0.00 0.00 3.51
2519 2626 1.221414 GCACTTCTTCTTGCGTGAGT 58.779 50.000 0.00 0.00 0.00 3.41
2970 3077 1.680105 CGTACATGGACGGCGTCAAC 61.680 60.000 37.13 23.25 39.19 3.18
3048 3155 3.625897 CAGTCGGCCAGGTCCACA 61.626 66.667 2.24 0.00 0.00 4.17
3182 3289 4.584518 CCACCCACAGCAGCACCA 62.585 66.667 0.00 0.00 0.00 4.17
3309 3419 2.094182 TCACATGTACGGCCTTCTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
3445 3562 4.564041 AGTGCCTCGCTATCATATTCAAG 58.436 43.478 0.00 0.00 0.00 3.02
3460 3577 5.445540 CGGTTTAAGTTCGAATTAGTGCCTC 60.446 44.000 0.00 0.00 0.00 4.70
3473 3590 5.321516 CGATCCATTTCACGGTTTAAGTTC 58.678 41.667 0.00 0.00 0.00 3.01
3486 3603 1.017387 GCAGGTGACCGATCCATTTC 58.983 55.000 0.00 0.00 0.00 2.17
3487 3604 0.327924 TGCAGGTGACCGATCCATTT 59.672 50.000 0.00 0.00 0.00 2.32
3488 3605 0.107508 CTGCAGGTGACCGATCCATT 60.108 55.000 5.57 0.00 0.00 3.16
3489 3606 0.977627 TCTGCAGGTGACCGATCCAT 60.978 55.000 15.13 0.00 0.00 3.41
3490 3607 0.977627 ATCTGCAGGTGACCGATCCA 60.978 55.000 15.13 0.00 0.00 3.41
3491 3608 0.179000 AATCTGCAGGTGACCGATCC 59.821 55.000 15.13 0.00 0.00 3.36
3492 3609 1.936547 GAAATCTGCAGGTGACCGATC 59.063 52.381 15.13 0.00 0.00 3.69
3493 3610 1.407437 GGAAATCTGCAGGTGACCGAT 60.407 52.381 15.13 0.00 0.00 4.18
3494 3611 0.036388 GGAAATCTGCAGGTGACCGA 60.036 55.000 15.13 0.00 0.00 4.69
3495 3612 0.036010 AGGAAATCTGCAGGTGACCG 60.036 55.000 15.13 0.00 0.00 4.79
3496 3613 1.457346 CAGGAAATCTGCAGGTGACC 58.543 55.000 15.13 13.84 36.60 4.02
3505 3622 0.743701 AGCTCGCAGCAGGAAATCTG 60.744 55.000 10.16 0.00 45.56 2.90
3506 3623 0.826715 TAGCTCGCAGCAGGAAATCT 59.173 50.000 10.16 0.00 45.56 2.40
3549 3687 5.811399 TTTGGTTGGATTACTCATAAGCG 57.189 39.130 0.00 0.00 0.00 4.68
3591 3729 5.476614 ACAGTGTTCTAGGTTCCGATTTAC 58.523 41.667 0.00 0.00 0.00 2.01
3592 3730 5.337009 GGACAGTGTTCTAGGTTCCGATTTA 60.337 44.000 0.00 0.00 0.00 1.40
3593 3731 4.562963 GGACAGTGTTCTAGGTTCCGATTT 60.563 45.833 0.00 0.00 0.00 2.17
3594 3732 3.056035 GGACAGTGTTCTAGGTTCCGATT 60.056 47.826 0.00 0.00 0.00 3.34
3595 3733 2.496470 GGACAGTGTTCTAGGTTCCGAT 59.504 50.000 0.00 0.00 0.00 4.18
3596 3734 1.891150 GGACAGTGTTCTAGGTTCCGA 59.109 52.381 0.00 0.00 0.00 4.55
3635 3773 0.972983 AGCGACATGGGAGTAGTGCT 60.973 55.000 0.00 0.00 0.00 4.40
3646 3784 6.038161 TCCCAAAATACTAAATCAGCGACATG 59.962 38.462 0.00 0.00 0.00 3.21
3647 3785 6.038271 GTCCCAAAATACTAAATCAGCGACAT 59.962 38.462 0.00 0.00 0.00 3.06
3648 3786 5.353123 GTCCCAAAATACTAAATCAGCGACA 59.647 40.000 0.00 0.00 0.00 4.35
3649 3787 5.501897 CGTCCCAAAATACTAAATCAGCGAC 60.502 44.000 0.00 0.00 0.00 5.19
3650 3788 4.569162 CGTCCCAAAATACTAAATCAGCGA 59.431 41.667 0.00 0.00 0.00 4.93
3651 3789 4.260620 CCGTCCCAAAATACTAAATCAGCG 60.261 45.833 0.00 0.00 0.00 5.18
3652 3790 4.036380 CCCGTCCCAAAATACTAAATCAGC 59.964 45.833 0.00 0.00 0.00 4.26
3653 3791 5.433526 TCCCGTCCCAAAATACTAAATCAG 58.566 41.667 0.00 0.00 0.00 2.90
3654 3792 5.438698 TCCCGTCCCAAAATACTAAATCA 57.561 39.130 0.00 0.00 0.00 2.57
3655 3793 5.884232 AGTTCCCGTCCCAAAATACTAAATC 59.116 40.000 0.00 0.00 0.00 2.17
3656 3794 5.823312 AGTTCCCGTCCCAAAATACTAAAT 58.177 37.500 0.00 0.00 0.00 1.40
3657 3795 5.245584 AGTTCCCGTCCCAAAATACTAAA 57.754 39.130 0.00 0.00 0.00 1.85
3658 3796 4.914177 AGTTCCCGTCCCAAAATACTAA 57.086 40.909 0.00 0.00 0.00 2.24
3659 3797 6.172630 GTTTAGTTCCCGTCCCAAAATACTA 58.827 40.000 0.00 0.00 0.00 1.82
3660 3798 4.914177 TTAGTTCCCGTCCCAAAATACT 57.086 40.909 0.00 0.00 0.00 2.12
3661 3799 4.156556 GGTTTAGTTCCCGTCCCAAAATAC 59.843 45.833 0.00 0.00 0.00 1.89
3662 3800 4.043184 AGGTTTAGTTCCCGTCCCAAAATA 59.957 41.667 0.00 0.00 0.00 1.40
3663 3801 3.159472 GGTTTAGTTCCCGTCCCAAAAT 58.841 45.455 0.00 0.00 0.00 1.82
3664 3802 2.175284 AGGTTTAGTTCCCGTCCCAAAA 59.825 45.455 0.00 0.00 0.00 2.44
3665 3803 1.776063 AGGTTTAGTTCCCGTCCCAAA 59.224 47.619 0.00 0.00 0.00 3.28
3666 3804 1.437397 AGGTTTAGTTCCCGTCCCAA 58.563 50.000 0.00 0.00 0.00 4.12
3667 3805 2.323999 TAGGTTTAGTTCCCGTCCCA 57.676 50.000 0.00 0.00 0.00 4.37
3668 3806 3.920231 AATAGGTTTAGTTCCCGTCCC 57.080 47.619 0.00 0.00 0.00 4.46
3669 3807 4.637534 GGAAAATAGGTTTAGTTCCCGTCC 59.362 45.833 0.00 0.00 0.00 4.79
3670 3808 5.494724 AGGAAAATAGGTTTAGTTCCCGTC 58.505 41.667 0.00 0.00 0.00 4.79
3671 3809 5.509832 AGGAAAATAGGTTTAGTTCCCGT 57.490 39.130 0.00 0.00 0.00 5.28
3672 3810 6.829229 AAAGGAAAATAGGTTTAGTTCCCG 57.171 37.500 0.00 0.00 0.00 5.14
3680 3818 9.772973 GTGTTTGGAATAAAGGAAAATAGGTTT 57.227 29.630 0.00 0.00 0.00 3.27
3681 3819 8.085909 CGTGTTTGGAATAAAGGAAAATAGGTT 58.914 33.333 0.00 0.00 0.00 3.50
3682 3820 7.309560 CCGTGTTTGGAATAAAGGAAAATAGGT 60.310 37.037 0.00 0.00 0.00 3.08
3683 3821 7.033185 CCGTGTTTGGAATAAAGGAAAATAGG 58.967 38.462 0.00 0.00 0.00 2.57
3684 3822 7.822658 TCCGTGTTTGGAATAAAGGAAAATAG 58.177 34.615 0.00 0.00 34.30 1.73
3685 3823 7.094118 CCTCCGTGTTTGGAATAAAGGAAAATA 60.094 37.037 0.00 0.00 37.64 1.40
3686 3824 6.295067 CCTCCGTGTTTGGAATAAAGGAAAAT 60.295 38.462 0.00 0.00 37.64 1.82
3687 3825 5.010213 CCTCCGTGTTTGGAATAAAGGAAAA 59.990 40.000 0.00 0.00 37.64 2.29
3688 3826 4.521256 CCTCCGTGTTTGGAATAAAGGAAA 59.479 41.667 0.00 0.00 37.64 3.13
3689 3827 4.076394 CCTCCGTGTTTGGAATAAAGGAA 58.924 43.478 0.00 0.00 37.64 3.36
3690 3828 3.328343 TCCTCCGTGTTTGGAATAAAGGA 59.672 43.478 0.00 0.00 37.64 3.36
3691 3829 3.681593 TCCTCCGTGTTTGGAATAAAGG 58.318 45.455 0.00 0.00 37.64 3.11
3692 3830 3.127030 GCTCCTCCGTGTTTGGAATAAAG 59.873 47.826 0.00 0.00 37.64 1.85
3693 3831 3.078837 GCTCCTCCGTGTTTGGAATAAA 58.921 45.455 0.00 0.00 37.64 1.40
3694 3832 2.706890 GCTCCTCCGTGTTTGGAATAA 58.293 47.619 0.00 0.00 37.64 1.40
3695 3833 1.404986 CGCTCCTCCGTGTTTGGAATA 60.405 52.381 0.00 0.00 37.64 1.75
3696 3834 0.673644 CGCTCCTCCGTGTTTGGAAT 60.674 55.000 0.00 0.00 37.64 3.01
3697 3835 1.301401 CGCTCCTCCGTGTTTGGAA 60.301 57.895 0.00 0.00 37.64 3.53
3698 3836 2.342279 CGCTCCTCCGTGTTTGGA 59.658 61.111 0.00 0.00 36.37 3.53
3699 3837 2.742372 CCGCTCCTCCGTGTTTGG 60.742 66.667 0.00 0.00 0.00 3.28
3700 3838 3.423154 GCCGCTCCTCCGTGTTTG 61.423 66.667 0.00 0.00 0.00 2.93
3701 3839 3.591254 GAGCCGCTCCTCCGTGTTT 62.591 63.158 9.42 0.00 0.00 2.83
3702 3840 4.070552 GAGCCGCTCCTCCGTGTT 62.071 66.667 9.42 0.00 0.00 3.32
3707 3845 3.418744 GAAGACGAGCCGCTCCTCC 62.419 68.421 14.85 4.24 0.00 4.30
3708 3846 2.103340 GAAGACGAGCCGCTCCTC 59.897 66.667 14.85 12.43 0.00 3.71
3709 3847 3.816524 CGAAGACGAGCCGCTCCT 61.817 66.667 14.85 2.99 42.66 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.