Multiple sequence alignment - TraesCS6D01G133400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G133400 chr6D 100.000 3952 0 0 1 3952 101201199 101205150 0.000000e+00 7299.0
1 TraesCS6D01G133400 chr6D 90.647 973 78 8 997 1965 25440238 25439275 0.000000e+00 1280.0
2 TraesCS6D01G133400 chr6D 90.427 961 78 5 994 1954 101212207 101213153 0.000000e+00 1253.0
3 TraesCS6D01G133400 chr6D 86.249 909 94 13 2109 3009 25438684 25437799 0.000000e+00 957.0
4 TraesCS6D01G133400 chr6D 84.490 922 117 13 1000 1917 100568781 100567882 0.000000e+00 887.0
5 TraesCS6D01G133400 chr6D 82.635 835 134 10 2179 3005 101214182 101215013 0.000000e+00 728.0
6 TraesCS6D01G133400 chr6B 92.098 3189 206 22 4 3185 185099051 185102200 0.000000e+00 4451.0
7 TraesCS6D01G133400 chr6B 92.075 1224 87 7 1962 3185 185123964 185125177 0.000000e+00 1714.0
8 TraesCS6D01G133400 chr6B 90.123 972 82 7 990 1958 185110521 185111481 0.000000e+00 1251.0
9 TraesCS6D01G133400 chr6B 85.113 927 112 13 995 1917 184725662 184724758 0.000000e+00 924.0
10 TraesCS6D01G133400 chr6B 88.919 370 37 4 313 680 185117423 185117790 1.670000e-123 453.0
11 TraesCS6D01G133400 chr6B 92.657 286 20 1 3299 3583 185125175 185125460 1.020000e-110 411.0
12 TraesCS6D01G133400 chr6A 94.156 1985 92 12 4 1979 121658049 121660018 0.000000e+00 3001.0
13 TraesCS6D01G133400 chr6A 89.804 1226 89 17 1987 3185 121660117 121661333 0.000000e+00 1539.0
14 TraesCS6D01G133400 chr6A 91.720 930 71 4 996 1919 121871004 121871933 0.000000e+00 1286.0
15 TraesCS6D01G133400 chr6A 84.267 928 118 13 995 1917 120130190 120129286 0.000000e+00 880.0
16 TraesCS6D01G133400 chr6A 87.711 415 34 3 3299 3711 121661331 121661730 5.980000e-128 468.0
17 TraesCS6D01G133400 chr1D 80.522 996 167 22 2106 3090 334041708 334040729 0.000000e+00 739.0
18 TraesCS6D01G133400 chr4A 81.829 875 148 10 2106 2975 716963684 716962816 0.000000e+00 725.0
19 TraesCS6D01G133400 chr4A 73.826 298 53 17 290 582 4283180 4282903 1.170000e-15 95.3
20 TraesCS6D01G133400 chr7A 81.766 872 148 10 2106 2973 16730586 16731450 0.000000e+00 719.0
21 TraesCS6D01G133400 chr7A 92.562 121 9 0 3183 3303 105313851 105313731 1.460000e-39 174.0
22 TraesCS6D01G133400 chr1A 80.000 995 174 19 2106 3090 431977780 431976801 0.000000e+00 712.0
23 TraesCS6D01G133400 chr7D 84.704 693 100 6 2219 2909 17427425 17428113 0.000000e+00 688.0
24 TraesCS6D01G133400 chr7D 75.000 188 30 15 9 191 1902014 1902189 1.970000e-08 71.3
25 TraesCS6D01G133400 chr2A 92.683 123 9 0 3183 3305 78845689 78845567 1.130000e-40 178.0
26 TraesCS6D01G133400 chr2A 90.909 132 9 2 3172 3302 606523677 606523806 1.460000e-39 174.0
27 TraesCS6D01G133400 chrUn 93.277 119 8 0 3183 3301 99244824 99244942 4.060000e-40 176.0
28 TraesCS6D01G133400 chr2D 92.623 122 9 0 3179 3300 539879446 539879567 4.060000e-40 176.0
29 TraesCS6D01G133400 chr2D 91.935 124 10 0 3180 3303 443246051 443245928 1.460000e-39 174.0
30 TraesCS6D01G133400 chr2D 87.586 145 14 4 3182 3324 114520402 114520260 8.790000e-37 165.0
31 TraesCS6D01G133400 chr2B 92.063 126 9 1 3179 3303 643184740 643184615 4.060000e-40 176.0
32 TraesCS6D01G133400 chr7B 91.870 123 10 0 3179 3301 143329518 143329396 5.250000e-39 172.0
33 TraesCS6D01G133400 chr5A 84.559 136 17 4 4 139 599534448 599534317 8.910000e-27 132.0
34 TraesCS6D01G133400 chr5A 81.618 136 23 2 4 139 625698743 625698876 1.160000e-20 111.0
35 TraesCS6D01G133400 chr5B 83.088 136 21 2 4 139 625220267 625220134 5.360000e-24 122.0
36 TraesCS6D01G133400 chr5B 83.721 129 20 1 11 139 628820491 628820364 1.930000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G133400 chr6D 101201199 101205150 3951 False 7299.000000 7299 100.000 1 3952 1 chr6D.!!$F1 3951
1 TraesCS6D01G133400 chr6D 25437799 25440238 2439 True 1118.500000 1280 88.448 997 3009 2 chr6D.!!$R2 2012
2 TraesCS6D01G133400 chr6D 101212207 101215013 2806 False 990.500000 1253 86.531 994 3005 2 chr6D.!!$F2 2011
3 TraesCS6D01G133400 chr6D 100567882 100568781 899 True 887.000000 887 84.490 1000 1917 1 chr6D.!!$R1 917
4 TraesCS6D01G133400 chr6B 185099051 185102200 3149 False 4451.000000 4451 92.098 4 3185 1 chr6B.!!$F1 3181
5 TraesCS6D01G133400 chr6B 185110521 185111481 960 False 1251.000000 1251 90.123 990 1958 1 chr6B.!!$F2 968
6 TraesCS6D01G133400 chr6B 185123964 185125460 1496 False 1062.500000 1714 92.366 1962 3583 2 chr6B.!!$F4 1621
7 TraesCS6D01G133400 chr6B 184724758 184725662 904 True 924.000000 924 85.113 995 1917 1 chr6B.!!$R1 922
8 TraesCS6D01G133400 chr6A 121658049 121661730 3681 False 1669.333333 3001 90.557 4 3711 3 chr6A.!!$F2 3707
9 TraesCS6D01G133400 chr6A 121871004 121871933 929 False 1286.000000 1286 91.720 996 1919 1 chr6A.!!$F1 923
10 TraesCS6D01G133400 chr6A 120129286 120130190 904 True 880.000000 880 84.267 995 1917 1 chr6A.!!$R1 922
11 TraesCS6D01G133400 chr1D 334040729 334041708 979 True 739.000000 739 80.522 2106 3090 1 chr1D.!!$R1 984
12 TraesCS6D01G133400 chr4A 716962816 716963684 868 True 725.000000 725 81.829 2106 2975 1 chr4A.!!$R2 869
13 TraesCS6D01G133400 chr7A 16730586 16731450 864 False 719.000000 719 81.766 2106 2973 1 chr7A.!!$F1 867
14 TraesCS6D01G133400 chr1A 431976801 431977780 979 True 712.000000 712 80.000 2106 3090 1 chr1A.!!$R1 984
15 TraesCS6D01G133400 chr7D 17427425 17428113 688 False 688.000000 688 84.704 2219 2909 1 chr7D.!!$F2 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 652 1.750193 TGCGGGAATCTGAATGTTCC 58.250 50.0 0.77 0.77 42.51 3.62 F
1419 1431 0.540923 GCATCCTGGAGCTTCTCAGT 59.459 55.0 1.52 0.00 31.08 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1761 1.160137 GCTCCTCGTGTTGCTTGATT 58.840 50.0 0.00 0.0 0.00 2.57 R
3277 4663 0.108019 ACCCTTCGTCCGAAAAAGCT 59.892 50.0 3.52 0.0 33.34 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.752695 CCAAGTTGGTAGAGACAAATATCAAC 58.247 38.462 14.21 1.08 41.34 3.18
188 189 7.418337 TCACCTCAGTCAAAGCTAATATGTA 57.582 36.000 0.00 0.00 0.00 2.29
189 190 7.492524 TCACCTCAGTCAAAGCTAATATGTAG 58.507 38.462 0.00 0.00 0.00 2.74
250 251 6.191661 TGCTATGTAAATCGAAATTTGCGAG 58.808 36.000 5.59 0.00 39.51 5.03
461 462 8.073167 AGGGTTTAATTTGCTTTTAATTTTGCG 58.927 29.630 0.00 0.00 0.00 4.85
497 499 8.361169 TGCTAAAGCTTTAATTCCACCTAAAT 57.639 30.769 19.10 0.00 42.66 1.40
542 544 6.676950 TGTGACCATGTACACATCAAATTTC 58.323 36.000 15.07 0.00 41.19 2.17
592 594 1.810853 GCATTTTGACGCCCATGGC 60.811 57.895 6.09 0.58 46.75 4.40
608 610 2.214376 TGGCACCGAATTGGATTTCT 57.786 45.000 0.00 0.00 42.00 2.52
609 611 1.818060 TGGCACCGAATTGGATTTCTG 59.182 47.619 0.00 0.00 42.00 3.02
650 652 1.750193 TGCGGGAATCTGAATGTTCC 58.250 50.000 0.77 0.77 42.51 3.62
666 668 8.039603 TGAATGTTCCATCTTATGTGTGTTAC 57.960 34.615 0.00 0.00 0.00 2.50
667 669 7.663493 TGAATGTTCCATCTTATGTGTGTTACA 59.337 33.333 0.00 0.00 44.87 2.41
689 692 7.681939 ACATTTTTCTTATTTGCTCCTCGTA 57.318 32.000 0.00 0.00 0.00 3.43
761 764 3.005554 GTGAGTGCCTACGTCTGTACTA 58.994 50.000 7.74 0.00 0.00 1.82
881 884 4.937696 TTGAATTTGATCGTATGTGCGT 57.062 36.364 0.00 0.00 0.00 5.24
1009 1012 4.424711 TCCCCGCCATGGAGCAAC 62.425 66.667 18.40 0.00 42.00 4.17
1182 1194 2.047274 CGTGTCATGGCCGACCTT 60.047 61.111 8.15 0.00 34.88 3.50
1419 1431 0.540923 GCATCCTGGAGCTTCTCAGT 59.459 55.000 1.52 0.00 31.08 3.41
1463 1475 2.060980 ACATCAGGGAGGACGAGGC 61.061 63.158 0.00 0.00 0.00 4.70
1749 1761 1.313091 ACGAGCTCATGGAGTACGCA 61.313 55.000 15.40 0.00 35.37 5.24
1931 1949 5.241506 CACCAGCTCCTTAATTTGTTTCAGA 59.758 40.000 0.00 0.00 0.00 3.27
1932 1950 5.833131 ACCAGCTCCTTAATTTGTTTCAGAA 59.167 36.000 0.00 0.00 0.00 3.02
1933 1951 6.494835 ACCAGCTCCTTAATTTGTTTCAGAAT 59.505 34.615 0.00 0.00 0.00 2.40
1934 1952 7.669722 ACCAGCTCCTTAATTTGTTTCAGAATA 59.330 33.333 0.00 0.00 0.00 1.75
2051 3124 7.611467 TGATAGATTTGGTATTATGGATGTGCC 59.389 37.037 0.00 0.00 37.10 5.01
2282 3656 2.891191 TAAGGGCCGACAAATCCTTT 57.109 45.000 0.00 0.00 39.90 3.11
2327 3703 9.225201 CCATTCTAAATTGTGTAAATCGACATG 57.775 33.333 0.00 0.00 0.00 3.21
2418 3794 3.524095 TGAGGAACCCAAATGTGATGT 57.476 42.857 0.00 0.00 0.00 3.06
2537 3913 1.667724 GAGACAATGAGGTTGCATCCG 59.332 52.381 8.17 0.00 41.69 4.18
2654 4030 0.391130 CGATCGGCAGAGACCCAAAA 60.391 55.000 7.38 0.00 0.00 2.44
2701 4078 1.827681 CCAGAGAGGTTCGAGTCTCA 58.172 55.000 18.43 0.00 41.55 3.27
2810 4187 3.076104 CATGGAGATCGTGCTTGCT 57.924 52.632 0.00 0.00 0.00 3.91
2926 4303 9.334947 GAGGAAGAATGATCTCAATTTACATCA 57.665 33.333 0.00 0.00 33.77 3.07
2960 4337 2.478539 GCCTCCGATTTGATTTGCACTC 60.479 50.000 0.00 0.00 0.00 3.51
3193 4579 7.171630 CTTATAAAGCATATACTCCCTCCGT 57.828 40.000 0.00 0.00 0.00 4.69
3194 4580 5.662674 ATAAAGCATATACTCCCTCCGTC 57.337 43.478 0.00 0.00 0.00 4.79
3195 4581 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
3196 4582 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
3197 4583 1.885359 GCATATACTCCCTCCGTCCGA 60.885 57.143 0.00 0.00 0.00 4.55
3198 4584 2.511659 CATATACTCCCTCCGTCCGAA 58.488 52.381 0.00 0.00 0.00 4.30
3199 4585 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
3200 4586 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3201 4587 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3221 4607 6.791867 AAAAACTTATCCCAAGCTTATCCC 57.208 37.500 0.00 0.00 0.00 3.85
3222 4608 5.734031 AAACTTATCCCAAGCTTATCCCT 57.266 39.130 0.00 0.00 0.00 4.20
3223 4609 4.984146 ACTTATCCCAAGCTTATCCCTC 57.016 45.455 0.00 0.00 0.00 4.30
3224 4610 4.307259 ACTTATCCCAAGCTTATCCCTCA 58.693 43.478 0.00 0.00 0.00 3.86
3225 4611 4.726825 ACTTATCCCAAGCTTATCCCTCAA 59.273 41.667 0.00 0.00 0.00 3.02
3226 4612 5.193728 ACTTATCCCAAGCTTATCCCTCAAA 59.806 40.000 0.00 0.00 0.00 2.69
3227 4613 4.821532 ATCCCAAGCTTATCCCTCAAAT 57.178 40.909 0.00 0.00 0.00 2.32
3228 4614 3.902218 TCCCAAGCTTATCCCTCAAATG 58.098 45.455 0.00 0.00 0.00 2.32
3229 4615 3.527253 TCCCAAGCTTATCCCTCAAATGA 59.473 43.478 0.00 0.00 0.00 2.57
3230 4616 4.017591 TCCCAAGCTTATCCCTCAAATGAA 60.018 41.667 0.00 0.00 0.00 2.57
3231 4617 4.711355 CCCAAGCTTATCCCTCAAATGAAA 59.289 41.667 0.00 0.00 0.00 2.69
3232 4618 5.163478 CCCAAGCTTATCCCTCAAATGAAAG 60.163 44.000 0.00 0.00 0.00 2.62
3233 4619 5.420104 CCAAGCTTATCCCTCAAATGAAAGT 59.580 40.000 0.00 0.00 0.00 2.66
3234 4620 6.603201 CCAAGCTTATCCCTCAAATGAAAGTA 59.397 38.462 0.00 0.00 0.00 2.24
3235 4621 7.286316 CCAAGCTTATCCCTCAAATGAAAGTAT 59.714 37.037 0.00 0.00 0.00 2.12
3236 4622 8.348507 CAAGCTTATCCCTCAAATGAAAGTATC 58.651 37.037 0.00 0.00 0.00 2.24
3237 4623 7.810260 AGCTTATCCCTCAAATGAAAGTATCT 58.190 34.615 0.00 0.00 0.00 1.98
3238 4624 8.938883 AGCTTATCCCTCAAATGAAAGTATCTA 58.061 33.333 0.00 0.00 0.00 1.98
3239 4625 9.213799 GCTTATCCCTCAAATGAAAGTATCTAG 57.786 37.037 0.00 0.00 0.00 2.43
3240 4626 9.213799 CTTATCCCTCAAATGAAAGTATCTAGC 57.786 37.037 0.00 0.00 0.00 3.42
3241 4627 6.560003 TCCCTCAAATGAAAGTATCTAGCA 57.440 37.500 0.00 0.00 0.00 3.49
3242 4628 6.349300 TCCCTCAAATGAAAGTATCTAGCAC 58.651 40.000 0.00 0.00 0.00 4.40
3243 4629 6.156949 TCCCTCAAATGAAAGTATCTAGCACT 59.843 38.462 0.00 0.00 0.00 4.40
3244 4630 7.344612 TCCCTCAAATGAAAGTATCTAGCACTA 59.655 37.037 0.00 0.00 0.00 2.74
3245 4631 7.987458 CCCTCAAATGAAAGTATCTAGCACTAA 59.013 37.037 0.00 0.00 0.00 2.24
3246 4632 8.821894 CCTCAAATGAAAGTATCTAGCACTAAC 58.178 37.037 0.00 0.00 0.00 2.34
3247 4633 9.593134 CTCAAATGAAAGTATCTAGCACTAACT 57.407 33.333 0.00 0.00 0.00 2.24
3248 4634 9.944376 TCAAATGAAAGTATCTAGCACTAACTT 57.056 29.630 0.00 0.00 31.94 2.66
3266 4652 8.713708 ACTAACTTAGTGCTAGATACATCCAT 57.286 34.615 0.33 0.00 37.69 3.41
3267 4653 9.148879 ACTAACTTAGTGCTAGATACATCCATT 57.851 33.333 0.33 0.00 37.69 3.16
3268 4654 9.988815 CTAACTTAGTGCTAGATACATCCATTT 57.011 33.333 0.00 0.00 0.00 2.32
3269 4655 8.668510 AACTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
3270 4656 8.023021 ACTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3271 4657 8.147058 ACTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3272 4658 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
3273 4659 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3274 4660 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3275 4661 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3276 4662 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3277 4663 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3278 4664 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3279 4665 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3280 4666 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3281 4667 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3282 4668 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3283 4669 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3284 4670 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3285 4671 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3286 4672 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3287 4673 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
3288 4674 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
3289 4675 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
3290 4676 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3291 4677 1.223187 GGACAAGCTTTTTCGGACGA 58.777 50.000 0.00 0.00 0.00 4.20
3292 4678 1.600485 GGACAAGCTTTTTCGGACGAA 59.400 47.619 2.62 2.62 0.00 3.85
3293 4679 2.349532 GGACAAGCTTTTTCGGACGAAG 60.350 50.000 7.25 0.00 35.38 3.79
3294 4680 1.602377 ACAAGCTTTTTCGGACGAAGG 59.398 47.619 7.25 4.06 35.38 3.46
3295 4681 1.069227 CAAGCTTTTTCGGACGAAGGG 60.069 52.381 7.25 3.75 35.38 3.95
3296 4682 0.108019 AGCTTTTTCGGACGAAGGGT 59.892 50.000 7.25 5.42 35.38 4.34
3297 4683 0.237498 GCTTTTTCGGACGAAGGGTG 59.763 55.000 7.25 1.87 35.38 4.61
3332 4718 6.701841 TCATCATAAAATTAGACGCTCAGGAC 59.298 38.462 0.00 0.00 0.00 3.85
3345 4731 3.488384 CGCTCAGGACATCTTGTAGACTC 60.488 52.174 0.00 0.00 0.00 3.36
3356 4742 4.586884 TCTTGTAGACTCGTACCACTGAT 58.413 43.478 0.00 0.00 0.00 2.90
3410 4797 6.297830 TGTATCTAATTAGGGGTAGGACCA 57.702 41.667 12.54 0.00 41.02 4.02
3469 4856 3.603365 GGCAGTTTAATGGCGGCT 58.397 55.556 11.43 0.00 35.90 5.52
3473 4860 1.173043 CAGTTTAATGGCGGCTGGAA 58.827 50.000 11.43 0.00 0.00 3.53
3506 4893 1.481871 TGAGGATCCTCCGGTTACAC 58.518 55.000 34.05 11.39 42.75 2.90
3512 4899 3.560668 GGATCCTCCGGTTACACCTTTTT 60.561 47.826 3.84 0.00 35.66 1.94
3592 4979 1.528824 CCGTCATGGCCATTCCTCT 59.471 57.895 17.92 0.00 35.26 3.69
3593 4980 0.758734 CCGTCATGGCCATTCCTCTA 59.241 55.000 17.92 0.00 35.26 2.43
3594 4981 1.140852 CCGTCATGGCCATTCCTCTAA 59.859 52.381 17.92 0.00 35.26 2.10
3595 4982 2.224621 CCGTCATGGCCATTCCTCTAAT 60.225 50.000 17.92 0.00 35.26 1.73
3596 4983 2.810274 CGTCATGGCCATTCCTCTAATG 59.190 50.000 17.92 2.65 43.99 1.90
3597 4984 3.494924 CGTCATGGCCATTCCTCTAATGA 60.495 47.826 17.92 5.53 46.81 2.57
3598 4985 4.660168 GTCATGGCCATTCCTCTAATGAT 58.340 43.478 17.92 0.00 46.81 2.45
3599 4986 4.458295 GTCATGGCCATTCCTCTAATGATG 59.542 45.833 17.92 0.92 46.81 3.07
3600 4987 2.867624 TGGCCATTCCTCTAATGATGC 58.132 47.619 0.00 0.00 46.81 3.91
3601 4988 2.165998 GGCCATTCCTCTAATGATGCC 58.834 52.381 0.00 1.65 46.81 4.40
3602 4989 2.489619 GGCCATTCCTCTAATGATGCCA 60.490 50.000 0.00 0.00 46.81 4.92
3603 4990 3.428532 GCCATTCCTCTAATGATGCCAT 58.571 45.455 0.00 0.00 46.81 4.40
3604 4991 3.442977 GCCATTCCTCTAATGATGCCATC 59.557 47.826 0.00 0.00 46.81 3.51
3605 4992 4.015084 CCATTCCTCTAATGATGCCATCC 58.985 47.826 1.49 0.00 46.81 3.51
3606 4993 3.407424 TTCCTCTAATGATGCCATCCG 57.593 47.619 1.49 0.00 31.40 4.18
3628 5015 0.962356 CAGCGCAAGGGGAATTCTGT 60.962 55.000 11.47 0.00 38.28 3.41
3635 5022 3.624707 GCAAGGGGAATTCTGTATCACCA 60.625 47.826 5.23 0.00 41.84 4.17
3646 5034 6.867519 TTCTGTATCACCAAAGTGGATCTA 57.132 37.500 0.18 0.00 44.64 1.98
3657 5045 4.744795 AAGTGGATCTAGTGGTCATGAC 57.255 45.455 17.91 17.91 0.00 3.06
3658 5046 3.987745 AGTGGATCTAGTGGTCATGACT 58.012 45.455 24.50 8.50 0.00 3.41
3679 5067 1.303561 GGAGGTTGCCAGTCATGCA 60.304 57.895 0.00 0.00 36.84 3.96
3711 5099 0.462581 TTGTCATGGATCGCCTGCTC 60.463 55.000 0.00 0.00 34.31 4.26
3712 5100 1.332889 TGTCATGGATCGCCTGCTCT 61.333 55.000 0.00 0.00 34.31 4.09
3713 5101 0.599728 GTCATGGATCGCCTGCTCTC 60.600 60.000 0.00 0.00 34.31 3.20
3714 5102 1.664017 CATGGATCGCCTGCTCTCG 60.664 63.158 0.00 0.00 34.31 4.04
3715 5103 2.865598 ATGGATCGCCTGCTCTCGG 61.866 63.158 0.00 0.00 34.31 4.63
3716 5104 3.532155 GGATCGCCTGCTCTCGGT 61.532 66.667 0.00 0.00 0.00 4.69
3717 5105 2.194212 GGATCGCCTGCTCTCGGTA 61.194 63.158 0.00 0.00 0.00 4.02
3718 5106 1.528292 GGATCGCCTGCTCTCGGTAT 61.528 60.000 0.00 0.00 0.00 2.73
3719 5107 0.315568 GATCGCCTGCTCTCGGTATT 59.684 55.000 0.00 0.00 0.00 1.89
3720 5108 0.753262 ATCGCCTGCTCTCGGTATTT 59.247 50.000 0.00 0.00 0.00 1.40
3721 5109 0.102481 TCGCCTGCTCTCGGTATTTC 59.898 55.000 0.00 0.00 0.00 2.17
3722 5110 0.103208 CGCCTGCTCTCGGTATTTCT 59.897 55.000 0.00 0.00 0.00 2.52
3723 5111 1.576356 GCCTGCTCTCGGTATTTCTG 58.424 55.000 0.00 0.00 0.00 3.02
3724 5112 1.808133 GCCTGCTCTCGGTATTTCTGG 60.808 57.143 0.00 0.00 0.00 3.86
3725 5113 1.576356 CTGCTCTCGGTATTTCTGGC 58.424 55.000 0.00 0.00 0.00 4.85
3726 5114 0.178068 TGCTCTCGGTATTTCTGGCC 59.822 55.000 0.00 0.00 0.00 5.36
3727 5115 0.178068 GCTCTCGGTATTTCTGGCCA 59.822 55.000 4.71 4.71 0.00 5.36
3728 5116 1.808133 GCTCTCGGTATTTCTGGCCAG 60.808 57.143 27.87 27.87 0.00 4.85
3729 5117 0.178068 TCTCGGTATTTCTGGCCAGC 59.822 55.000 28.91 13.39 0.00 4.85
3730 5118 0.179000 CTCGGTATTTCTGGCCAGCT 59.821 55.000 28.91 16.74 0.00 4.24
3731 5119 0.107703 TCGGTATTTCTGGCCAGCTG 60.108 55.000 28.91 17.97 0.00 4.24
3732 5120 1.097547 CGGTATTTCTGGCCAGCTGG 61.098 60.000 29.34 29.34 38.53 4.85
3733 5121 0.753111 GGTATTTCTGGCCAGCTGGG 60.753 60.000 33.46 17.61 40.85 4.45
3734 5122 0.255890 GTATTTCTGGCCAGCTGGGA 59.744 55.000 33.46 19.72 40.01 4.37
3735 5123 1.133668 GTATTTCTGGCCAGCTGGGAT 60.134 52.381 33.46 17.30 40.01 3.85
3736 5124 0.396695 ATTTCTGGCCAGCTGGGATG 60.397 55.000 33.46 9.20 40.01 3.51
3737 5125 1.792757 TTTCTGGCCAGCTGGGATGT 61.793 55.000 33.46 0.00 40.01 3.06
3738 5126 2.124403 CTGGCCAGCTGGGATGTC 60.124 66.667 33.46 16.43 40.01 3.06
3739 5127 2.934932 TGGCCAGCTGGGATGTCA 60.935 61.111 33.46 12.98 40.01 3.58
3740 5128 2.280404 CTGGCCAGCTGGGATGTCAT 62.280 60.000 33.46 0.00 40.01 3.06
3741 5129 1.527844 GGCCAGCTGGGATGTCATC 60.528 63.158 33.46 14.17 40.01 2.92
3754 5142 4.387598 GGATGTCATCCTTCTTGAGATGG 58.612 47.826 22.64 6.60 46.19 3.51
3755 5143 3.920231 TGTCATCCTTCTTGAGATGGG 57.080 47.619 11.66 4.29 40.27 4.00
3756 5144 2.507058 TGTCATCCTTCTTGAGATGGGG 59.493 50.000 11.66 6.27 40.27 4.96
3757 5145 2.774234 GTCATCCTTCTTGAGATGGGGA 59.226 50.000 11.66 8.02 40.27 4.81
3758 5146 3.044156 TCATCCTTCTTGAGATGGGGAG 58.956 50.000 11.66 4.38 40.27 4.30
3759 5147 1.885049 TCCTTCTTGAGATGGGGAGG 58.115 55.000 11.66 2.12 39.19 4.30
3760 5148 0.842635 CCTTCTTGAGATGGGGAGGG 59.157 60.000 5.29 0.00 36.16 4.30
3761 5149 1.589414 CTTCTTGAGATGGGGAGGGT 58.411 55.000 0.00 0.00 0.00 4.34
3762 5150 1.211457 CTTCTTGAGATGGGGAGGGTG 59.789 57.143 0.00 0.00 0.00 4.61
3763 5151 1.225704 CTTGAGATGGGGAGGGTGC 59.774 63.158 0.00 0.00 0.00 5.01
3764 5152 2.276309 CTTGAGATGGGGAGGGTGCC 62.276 65.000 0.00 0.00 0.00 5.01
3765 5153 2.692368 GAGATGGGGAGGGTGCCA 60.692 66.667 0.00 0.00 0.00 4.92
3766 5154 2.693864 AGATGGGGAGGGTGCCAG 60.694 66.667 0.00 0.00 0.00 4.85
3767 5155 2.692368 GATGGGGAGGGTGCCAGA 60.692 66.667 0.00 0.00 0.00 3.86
3768 5156 2.693864 ATGGGGAGGGTGCCAGAG 60.694 66.667 0.00 0.00 0.00 3.35
3780 5168 1.578423 GCCAGAGCAAAGTCACTGC 59.422 57.895 0.00 0.00 39.53 4.40
3781 5169 1.860484 GCCAGAGCAAAGTCACTGCC 61.860 60.000 0.00 0.00 40.86 4.85
3782 5170 1.239968 CCAGAGCAAAGTCACTGCCC 61.240 60.000 0.00 0.00 40.86 5.36
3783 5171 0.535780 CAGAGCAAAGTCACTGCCCA 60.536 55.000 0.00 0.00 40.86 5.36
3784 5172 0.183492 AGAGCAAAGTCACTGCCCAA 59.817 50.000 0.00 0.00 40.86 4.12
3785 5173 0.312102 GAGCAAAGTCACTGCCCAAC 59.688 55.000 0.00 0.00 40.86 3.77
3786 5174 1.008538 GCAAAGTCACTGCCCAACG 60.009 57.895 0.00 0.00 33.51 4.10
3787 5175 1.654220 CAAAGTCACTGCCCAACGG 59.346 57.895 0.00 0.00 0.00 4.44
3789 5177 2.279037 AAAGTCACTGCCCAACGGGT 62.279 55.000 0.06 0.00 46.51 5.28
3790 5178 2.958578 AAGTCACTGCCCAACGGGTG 62.959 60.000 0.06 0.00 46.51 4.61
3791 5179 4.263572 TCACTGCCCAACGGGTGG 62.264 66.667 4.68 4.68 46.51 4.61
3808 5196 2.486966 GCCAGTGCCTGCGAATTC 59.513 61.111 0.00 0.00 0.00 2.17
3809 5197 2.042831 GCCAGTGCCTGCGAATTCT 61.043 57.895 3.52 0.00 0.00 2.40
3810 5198 1.589716 GCCAGTGCCTGCGAATTCTT 61.590 55.000 3.52 0.00 0.00 2.52
3811 5199 0.449388 CCAGTGCCTGCGAATTCTTC 59.551 55.000 3.52 0.00 0.00 2.87
3812 5200 1.159285 CAGTGCCTGCGAATTCTTCA 58.841 50.000 3.52 0.76 0.00 3.02
3813 5201 1.536766 CAGTGCCTGCGAATTCTTCAA 59.463 47.619 3.52 0.00 0.00 2.69
3814 5202 2.163010 CAGTGCCTGCGAATTCTTCAAT 59.837 45.455 3.52 0.00 0.00 2.57
3815 5203 2.421424 AGTGCCTGCGAATTCTTCAATC 59.579 45.455 3.52 0.00 0.00 2.67
3816 5204 2.421424 GTGCCTGCGAATTCTTCAATCT 59.579 45.455 3.52 0.00 0.00 2.40
3817 5205 2.679837 TGCCTGCGAATTCTTCAATCTC 59.320 45.455 3.52 0.00 0.00 2.75
3818 5206 2.679837 GCCTGCGAATTCTTCAATCTCA 59.320 45.455 3.52 0.00 0.00 3.27
3819 5207 3.242673 GCCTGCGAATTCTTCAATCTCAG 60.243 47.826 3.52 0.00 0.00 3.35
3820 5208 3.311871 CCTGCGAATTCTTCAATCTCAGG 59.688 47.826 3.52 0.00 31.71 3.86
3821 5209 3.937706 CTGCGAATTCTTCAATCTCAGGT 59.062 43.478 3.52 0.00 0.00 4.00
3822 5210 4.326826 TGCGAATTCTTCAATCTCAGGTT 58.673 39.130 3.52 0.00 0.00 3.50
3823 5211 4.393062 TGCGAATTCTTCAATCTCAGGTTC 59.607 41.667 3.52 0.00 0.00 3.62
3824 5212 4.201861 GCGAATTCTTCAATCTCAGGTTCC 60.202 45.833 3.52 0.00 0.00 3.62
3825 5213 4.937620 CGAATTCTTCAATCTCAGGTTCCA 59.062 41.667 3.52 0.00 0.00 3.53
3826 5214 5.412594 CGAATTCTTCAATCTCAGGTTCCAA 59.587 40.000 3.52 0.00 0.00 3.53
3827 5215 6.402983 CGAATTCTTCAATCTCAGGTTCCAAG 60.403 42.308 3.52 0.00 0.00 3.61
3828 5216 5.567037 TTCTTCAATCTCAGGTTCCAAGA 57.433 39.130 0.00 0.00 0.00 3.02
3829 5217 5.768980 TCTTCAATCTCAGGTTCCAAGAT 57.231 39.130 2.35 2.35 0.00 2.40
3830 5218 5.494724 TCTTCAATCTCAGGTTCCAAGATG 58.505 41.667 7.27 3.98 30.35 2.90
3831 5219 4.916041 TCAATCTCAGGTTCCAAGATGT 57.084 40.909 7.27 0.00 30.35 3.06
3832 5220 6.213397 TCTTCAATCTCAGGTTCCAAGATGTA 59.787 38.462 7.27 0.00 30.35 2.29
3833 5221 5.982356 TCAATCTCAGGTTCCAAGATGTAG 58.018 41.667 7.27 3.27 30.35 2.74
3834 5222 5.485353 TCAATCTCAGGTTCCAAGATGTAGT 59.515 40.000 7.27 0.00 30.35 2.73
3835 5223 6.667848 TCAATCTCAGGTTCCAAGATGTAGTA 59.332 38.462 7.27 0.00 30.35 1.82
3836 5224 6.723298 ATCTCAGGTTCCAAGATGTAGTAG 57.277 41.667 6.13 0.00 0.00 2.57
3837 5225 5.827756 TCTCAGGTTCCAAGATGTAGTAGA 58.172 41.667 0.00 0.00 0.00 2.59
3838 5226 5.652891 TCTCAGGTTCCAAGATGTAGTAGAC 59.347 44.000 0.00 0.00 0.00 2.59
3839 5227 5.330233 TCAGGTTCCAAGATGTAGTAGACA 58.670 41.667 0.00 0.00 43.97 3.41
3840 5228 5.419155 TCAGGTTCCAAGATGTAGTAGACAG 59.581 44.000 0.00 0.00 42.79 3.51
3841 5229 5.419155 CAGGTTCCAAGATGTAGTAGACAGA 59.581 44.000 0.00 0.00 42.79 3.41
3842 5230 6.017192 AGGTTCCAAGATGTAGTAGACAGAA 58.983 40.000 0.00 0.00 42.79 3.02
3843 5231 6.153680 AGGTTCCAAGATGTAGTAGACAGAAG 59.846 42.308 0.00 0.00 42.79 2.85
3844 5232 6.071278 GGTTCCAAGATGTAGTAGACAGAAGT 60.071 42.308 0.00 0.00 42.79 3.01
3845 5233 7.379750 GTTCCAAGATGTAGTAGACAGAAGTT 58.620 38.462 0.00 0.00 42.79 2.66
3846 5234 7.540474 TCCAAGATGTAGTAGACAGAAGTTT 57.460 36.000 0.00 0.00 42.79 2.66
3847 5235 7.963532 TCCAAGATGTAGTAGACAGAAGTTTT 58.036 34.615 0.00 0.00 42.79 2.43
3848 5236 7.872993 TCCAAGATGTAGTAGACAGAAGTTTTG 59.127 37.037 0.00 0.00 42.79 2.44
3849 5237 7.657761 CCAAGATGTAGTAGACAGAAGTTTTGT 59.342 37.037 0.00 0.00 42.79 2.83
3850 5238 8.491152 CAAGATGTAGTAGACAGAAGTTTTGTG 58.509 37.037 3.37 0.00 42.79 3.33
3851 5239 7.952671 AGATGTAGTAGACAGAAGTTTTGTGA 58.047 34.615 3.37 0.00 42.79 3.58
3852 5240 8.589338 AGATGTAGTAGACAGAAGTTTTGTGAT 58.411 33.333 3.37 0.00 42.79 3.06
3853 5241 7.946655 TGTAGTAGACAGAAGTTTTGTGATG 57.053 36.000 3.37 0.00 32.86 3.07
3854 5242 5.931441 AGTAGACAGAAGTTTTGTGATGC 57.069 39.130 3.37 0.00 0.00 3.91
3855 5243 5.368145 AGTAGACAGAAGTTTTGTGATGCA 58.632 37.500 3.37 0.00 0.00 3.96
3856 5244 4.825546 AGACAGAAGTTTTGTGATGCAG 57.174 40.909 3.37 0.00 0.00 4.41
3857 5245 4.202441 AGACAGAAGTTTTGTGATGCAGT 58.798 39.130 3.37 0.00 0.00 4.40
3858 5246 4.274459 AGACAGAAGTTTTGTGATGCAGTC 59.726 41.667 3.37 0.00 0.00 3.51
3859 5247 3.947196 ACAGAAGTTTTGTGATGCAGTCA 59.053 39.130 0.00 0.00 0.00 3.41
3883 5271 7.875327 ACAACTGTGAAACTACATAACCTTT 57.125 32.000 0.00 0.00 38.04 3.11
3884 5272 8.967664 ACAACTGTGAAACTACATAACCTTTA 57.032 30.769 0.00 0.00 38.04 1.85
3885 5273 9.052759 ACAACTGTGAAACTACATAACCTTTAG 57.947 33.333 0.00 0.00 38.04 1.85
3886 5274 8.504005 CAACTGTGAAACTACATAACCTTTAGG 58.496 37.037 0.00 0.00 38.04 2.69
3887 5275 7.166167 ACTGTGAAACTACATAACCTTTAGGG 58.834 38.462 0.10 0.00 37.32 3.53
3888 5276 7.016858 ACTGTGAAACTACATAACCTTTAGGGA 59.983 37.037 0.10 0.00 37.32 4.20
3889 5277 7.163441 TGTGAAACTACATAACCTTTAGGGAC 58.837 38.462 0.10 0.00 37.32 4.46
3890 5278 6.596888 GTGAAACTACATAACCTTTAGGGACC 59.403 42.308 0.10 0.00 40.27 4.46
3891 5279 6.502863 TGAAACTACATAACCTTTAGGGACCT 59.497 38.462 0.10 0.00 40.27 3.85
3892 5280 6.964876 AACTACATAACCTTTAGGGACCTT 57.035 37.500 0.00 0.00 40.27 3.50
3893 5281 6.556974 ACTACATAACCTTTAGGGACCTTC 57.443 41.667 0.00 0.00 40.27 3.46
3894 5282 4.482952 ACATAACCTTTAGGGACCTTCG 57.517 45.455 0.00 0.00 40.27 3.79
3895 5283 4.098894 ACATAACCTTTAGGGACCTTCGA 58.901 43.478 0.00 0.00 40.27 3.71
3896 5284 4.081254 ACATAACCTTTAGGGACCTTCGAC 60.081 45.833 0.00 0.00 40.27 4.20
3897 5285 2.019807 ACCTTTAGGGACCTTCGACA 57.980 50.000 0.00 0.00 40.27 4.35
3898 5286 2.547990 ACCTTTAGGGACCTTCGACAT 58.452 47.619 0.00 0.00 40.27 3.06
3899 5287 2.500504 ACCTTTAGGGACCTTCGACATC 59.499 50.000 0.00 0.00 40.27 3.06
3900 5288 2.500098 CCTTTAGGGACCTTCGACATCA 59.500 50.000 0.00 0.00 37.23 3.07
3901 5289 3.134804 CCTTTAGGGACCTTCGACATCAT 59.865 47.826 0.00 0.00 37.23 2.45
3902 5290 4.372656 CTTTAGGGACCTTCGACATCATC 58.627 47.826 0.00 0.00 0.00 2.92
3903 5291 2.166907 AGGGACCTTCGACATCATCT 57.833 50.000 0.00 0.00 0.00 2.90
3904 5292 3.314307 AGGGACCTTCGACATCATCTA 57.686 47.619 0.00 0.00 0.00 1.98
3905 5293 3.850752 AGGGACCTTCGACATCATCTAT 58.149 45.455 0.00 0.00 0.00 1.98
3906 5294 4.227197 AGGGACCTTCGACATCATCTATT 58.773 43.478 0.00 0.00 0.00 1.73
3907 5295 4.039730 AGGGACCTTCGACATCATCTATTG 59.960 45.833 0.00 0.00 0.00 1.90
3908 5296 4.310769 GGACCTTCGACATCATCTATTGG 58.689 47.826 0.00 0.00 0.00 3.16
3909 5297 4.039245 GGACCTTCGACATCATCTATTGGA 59.961 45.833 0.00 0.00 0.00 3.53
3910 5298 5.207110 ACCTTCGACATCATCTATTGGAG 57.793 43.478 0.00 0.00 0.00 3.86
3911 5299 4.651503 ACCTTCGACATCATCTATTGGAGT 59.348 41.667 0.00 0.00 0.00 3.85
3912 5300 5.833667 ACCTTCGACATCATCTATTGGAGTA 59.166 40.000 0.00 0.00 0.00 2.59
3913 5301 6.015856 ACCTTCGACATCATCTATTGGAGTAG 60.016 42.308 0.00 0.00 0.00 2.57
3914 5302 5.378292 TCGACATCATCTATTGGAGTAGC 57.622 43.478 0.00 0.00 0.00 3.58
3915 5303 4.827284 TCGACATCATCTATTGGAGTAGCA 59.173 41.667 0.00 0.00 0.00 3.49
3916 5304 5.478332 TCGACATCATCTATTGGAGTAGCAT 59.522 40.000 0.00 0.00 0.00 3.79
3917 5305 6.015095 TCGACATCATCTATTGGAGTAGCATT 60.015 38.462 0.00 0.00 0.00 3.56
3918 5306 6.648310 CGACATCATCTATTGGAGTAGCATTT 59.352 38.462 0.00 0.00 0.00 2.32
3919 5307 7.148672 CGACATCATCTATTGGAGTAGCATTTC 60.149 40.741 0.00 0.00 0.00 2.17
3920 5308 6.939163 ACATCATCTATTGGAGTAGCATTTCC 59.061 38.462 0.00 0.00 0.00 3.13
3921 5309 6.499106 TCATCTATTGGAGTAGCATTTCCA 57.501 37.500 0.00 0.00 41.59 3.53
3922 5310 7.083062 TCATCTATTGGAGTAGCATTTCCAT 57.917 36.000 4.24 0.00 42.73 3.41
3923 5311 6.938596 TCATCTATTGGAGTAGCATTTCCATG 59.061 38.462 4.24 0.00 42.73 3.66
3924 5312 6.252599 TCTATTGGAGTAGCATTTCCATGT 57.747 37.500 4.24 0.79 42.73 3.21
3925 5313 6.057533 TCTATTGGAGTAGCATTTCCATGTG 58.942 40.000 4.24 0.00 42.73 3.21
3926 5314 3.998913 TGGAGTAGCATTTCCATGTGA 57.001 42.857 0.00 0.00 38.53 3.58
3927 5315 4.508551 TGGAGTAGCATTTCCATGTGAT 57.491 40.909 0.00 0.00 38.53 3.06
3928 5316 5.628797 TGGAGTAGCATTTCCATGTGATA 57.371 39.130 0.00 0.00 38.53 2.15
3929 5317 6.191657 TGGAGTAGCATTTCCATGTGATAT 57.808 37.500 0.00 0.00 38.53 1.63
3930 5318 6.233434 TGGAGTAGCATTTCCATGTGATATC 58.767 40.000 0.00 0.00 38.53 1.63
3931 5319 6.183361 TGGAGTAGCATTTCCATGTGATATCA 60.183 38.462 0.00 0.00 38.53 2.15
3932 5320 6.712095 GGAGTAGCATTTCCATGTGATATCAA 59.288 38.462 7.07 0.00 33.55 2.57
3933 5321 7.392673 GGAGTAGCATTTCCATGTGATATCAAT 59.607 37.037 7.07 1.01 33.55 2.57
3934 5322 9.440773 GAGTAGCATTTCCATGTGATATCAATA 57.559 33.333 7.07 0.00 32.28 1.90
3935 5323 9.970553 AGTAGCATTTCCATGTGATATCAATAT 57.029 29.630 7.07 2.46 32.28 1.28
3937 5325 8.289939 AGCATTTCCATGTGATATCAATATCC 57.710 34.615 7.07 0.00 38.66 2.59
3938 5326 7.891712 AGCATTTCCATGTGATATCAATATCCA 59.108 33.333 7.07 0.92 38.66 3.41
3939 5327 7.972277 GCATTTCCATGTGATATCAATATCCAC 59.028 37.037 7.07 0.00 38.66 4.02
3940 5328 8.464404 CATTTCCATGTGATATCAATATCCACC 58.536 37.037 7.07 0.00 38.66 4.61
3941 5329 6.065976 TCCATGTGATATCAATATCCACCC 57.934 41.667 7.07 0.00 38.66 4.61
3942 5330 5.551189 TCCATGTGATATCAATATCCACCCA 59.449 40.000 7.07 0.00 38.66 4.51
3943 5331 5.649395 CCATGTGATATCAATATCCACCCAC 59.351 44.000 7.07 0.00 38.66 4.61
3944 5332 5.241403 TGTGATATCAATATCCACCCACC 57.759 43.478 7.07 0.00 38.66 4.61
3945 5333 4.662650 TGTGATATCAATATCCACCCACCA 59.337 41.667 7.07 0.00 38.66 4.17
3946 5334 5.312974 TGTGATATCAATATCCACCCACCAT 59.687 40.000 7.07 0.00 38.66 3.55
3947 5335 5.882557 GTGATATCAATATCCACCCACCATC 59.117 44.000 7.07 0.00 38.66 3.51
3948 5336 5.792188 TGATATCAATATCCACCCACCATCT 59.208 40.000 1.98 0.00 38.66 2.90
3949 5337 6.965272 TGATATCAATATCCACCCACCATCTA 59.035 38.462 1.98 0.00 38.66 1.98
3950 5338 7.628910 TGATATCAATATCCACCCACCATCTAT 59.371 37.037 1.98 0.00 38.66 1.98
3951 5339 9.159254 GATATCAATATCCACCCACCATCTATA 57.841 37.037 0.00 0.00 34.46 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.445275 TGGTGGTGTATATGTTGATATTTGTC 57.555 34.615 0.00 0.00 0.00 3.18
165 166 7.492524 TCTACATATTAGCTTTGACTGAGGTG 58.507 38.462 0.00 0.00 0.00 4.00
213 214 9.006215 CGATTTACATAGCATGCATTGATATTG 57.994 33.333 21.98 11.61 34.73 1.90
250 251 4.507512 CCCTAGAGCCAAAATTATCCCTCC 60.508 50.000 0.00 0.00 0.00 4.30
344 345 4.265556 GCACGCTAGTTACACTAACATGAG 59.734 45.833 0.00 0.00 41.07 2.90
360 361 5.231357 CGTATGAAAGTTATCAAGCACGCTA 59.769 40.000 0.00 0.00 31.27 4.26
459 460 0.109504 TTTAGCATTTTGACCCGCGC 60.110 50.000 0.00 0.00 0.00 6.86
460 461 1.895051 CTTTAGCATTTTGACCCGCG 58.105 50.000 0.00 0.00 0.00 6.46
461 462 1.202348 AGCTTTAGCATTTTGACCCGC 59.798 47.619 4.33 0.00 45.16 6.13
497 499 9.190858 GTCACATTCAAATGCTACATGTAAAAA 57.809 29.630 7.06 0.00 40.04 1.94
502 504 4.766373 TGGTCACATTCAAATGCTACATGT 59.234 37.500 2.69 2.69 40.04 3.21
509 511 4.858692 GTGTACATGGTCACATTCAAATGC 59.141 41.667 14.63 0.00 40.04 3.56
564 566 6.223852 TGGGCGTCAAAATGCTTTATTTTTA 58.776 32.000 0.00 0.00 44.49 1.52
592 594 4.503741 ACAACAGAAATCCAATTCGGTG 57.496 40.909 0.00 0.00 37.70 4.94
666 668 8.616076 AGATACGAGGAGCAAATAAGAAAAATG 58.384 33.333 0.00 0.00 0.00 2.32
667 669 8.738645 AGATACGAGGAGCAAATAAGAAAAAT 57.261 30.769 0.00 0.00 0.00 1.82
689 692 2.548067 GGTGCGGATCCACGATTTAGAT 60.548 50.000 13.41 0.00 36.59 1.98
858 861 5.879237 ACGCACATACGATCAAATTCAATT 58.121 33.333 0.00 0.00 36.70 2.32
881 884 2.126463 GTGTACTGCTCGCGCTGA 60.126 61.111 11.41 3.55 38.34 4.26
1009 1012 2.412112 GCAGAGGTAGTACGCCCG 59.588 66.667 6.00 0.00 0.00 6.13
1749 1761 1.160137 GCTCCTCGTGTTGCTTGATT 58.840 50.000 0.00 0.00 0.00 2.57
2229 3603 7.624549 AGACATCAAGTAGCAAATCCTAGAAA 58.375 34.615 0.00 0.00 0.00 2.52
2327 3703 1.926510 GCGCCAAATAAATCCTGCAAC 59.073 47.619 0.00 0.00 0.00 4.17
2618 3994 2.699768 CGCCCACGCATTCACCAAT 61.700 57.895 0.00 0.00 34.03 3.16
2700 4077 0.944386 CCTTTGAAGTCCACCGTGTG 59.056 55.000 0.00 0.00 0.00 3.82
2701 4078 0.818040 GCCTTTGAAGTCCACCGTGT 60.818 55.000 0.00 0.00 0.00 4.49
2810 4187 1.416030 TCAAAGTGGTAGAGCAGTGCA 59.584 47.619 19.20 0.00 0.00 4.57
2901 4278 9.118300 GTGATGTAAATTGAGATCATTCTTCCT 57.882 33.333 5.94 0.00 32.32 3.36
2915 4292 5.698832 ACACGGACAATGTGATGTAAATTG 58.301 37.500 0.00 0.00 39.73 2.32
2916 4293 5.957842 ACACGGACAATGTGATGTAAATT 57.042 34.783 0.00 0.00 39.73 1.82
2926 4303 1.302511 GGAGGCACACGGACAATGT 60.303 57.895 0.00 0.00 0.00 2.71
2930 4307 2.107041 AAATCGGAGGCACACGGACA 62.107 55.000 0.00 0.00 30.84 4.02
2960 4337 9.539139 GAGAATTCATCTTCACATATTAATGCG 57.461 33.333 8.44 0.00 38.96 4.73
3067 4452 9.990360 TGACACACATAACTTCACTCTTAATTA 57.010 29.630 0.00 0.00 0.00 1.40
3078 4463 5.466728 ACACACTCATGACACACATAACTTC 59.533 40.000 0.00 0.00 37.46 3.01
3198 4584 6.503041 AGGGATAAGCTTGGGATAAGTTTTT 58.497 36.000 9.86 0.00 0.00 1.94
3199 4585 6.092346 AGGGATAAGCTTGGGATAAGTTTT 57.908 37.500 9.86 0.00 0.00 2.43
3200 4586 5.193728 TGAGGGATAAGCTTGGGATAAGTTT 59.806 40.000 9.86 0.00 0.00 2.66
3201 4587 4.726825 TGAGGGATAAGCTTGGGATAAGTT 59.273 41.667 9.86 0.00 0.00 2.66
3202 4588 4.307259 TGAGGGATAAGCTTGGGATAAGT 58.693 43.478 9.86 0.00 0.00 2.24
3203 4589 4.982241 TGAGGGATAAGCTTGGGATAAG 57.018 45.455 9.86 0.00 0.00 1.73
3204 4590 5.725551 TTTGAGGGATAAGCTTGGGATAA 57.274 39.130 9.86 0.00 0.00 1.75
3205 4591 5.372363 TCATTTGAGGGATAAGCTTGGGATA 59.628 40.000 9.86 0.00 0.00 2.59
3206 4592 4.168675 TCATTTGAGGGATAAGCTTGGGAT 59.831 41.667 9.86 0.00 0.00 3.85
3207 4593 3.527253 TCATTTGAGGGATAAGCTTGGGA 59.473 43.478 9.86 0.00 0.00 4.37
3208 4594 3.902218 TCATTTGAGGGATAAGCTTGGG 58.098 45.455 9.86 0.00 0.00 4.12
3209 4595 5.420104 ACTTTCATTTGAGGGATAAGCTTGG 59.580 40.000 9.86 0.00 0.00 3.61
3210 4596 6.521151 ACTTTCATTTGAGGGATAAGCTTG 57.479 37.500 9.86 0.00 0.00 4.01
3211 4597 8.277918 AGATACTTTCATTTGAGGGATAAGCTT 58.722 33.333 3.48 3.48 0.00 3.74
3212 4598 7.810260 AGATACTTTCATTTGAGGGATAAGCT 58.190 34.615 0.00 0.00 0.00 3.74
3213 4599 9.213799 CTAGATACTTTCATTTGAGGGATAAGC 57.786 37.037 0.00 0.00 0.00 3.09
3214 4600 9.213799 GCTAGATACTTTCATTTGAGGGATAAG 57.786 37.037 0.00 0.00 0.00 1.73
3215 4601 8.713971 TGCTAGATACTTTCATTTGAGGGATAA 58.286 33.333 0.00 0.00 0.00 1.75
3216 4602 8.150945 GTGCTAGATACTTTCATTTGAGGGATA 58.849 37.037 0.00 0.00 0.00 2.59
3217 4603 6.995091 GTGCTAGATACTTTCATTTGAGGGAT 59.005 38.462 0.00 0.00 0.00 3.85
3218 4604 6.156949 AGTGCTAGATACTTTCATTTGAGGGA 59.843 38.462 0.00 0.00 0.00 4.20
3219 4605 6.352516 AGTGCTAGATACTTTCATTTGAGGG 58.647 40.000 0.00 0.00 0.00 4.30
3220 4606 8.821894 GTTAGTGCTAGATACTTTCATTTGAGG 58.178 37.037 5.55 0.00 0.00 3.86
3221 4607 9.593134 AGTTAGTGCTAGATACTTTCATTTGAG 57.407 33.333 5.55 0.00 0.00 3.02
3222 4608 9.944376 AAGTTAGTGCTAGATACTTTCATTTGA 57.056 29.630 5.55 0.00 0.00 2.69
3241 4627 8.713708 ATGGATGTATCTAGCACTAAGTTAGT 57.286 34.615 9.85 9.85 40.28 2.24
3242 4628 9.988815 AAATGGATGTATCTAGCACTAAGTTAG 57.011 33.333 8.41 8.41 32.79 2.34
3243 4629 9.764363 CAAATGGATGTATCTAGCACTAAGTTA 57.236 33.333 0.00 0.00 0.00 2.24
3244 4630 8.486210 TCAAATGGATGTATCTAGCACTAAGTT 58.514 33.333 0.00 0.00 0.00 2.66
3245 4631 8.023021 TCAAATGGATGTATCTAGCACTAAGT 57.977 34.615 0.00 0.00 0.00 2.24
3246 4632 7.601886 CCTCAAATGGATGTATCTAGCACTAAG 59.398 40.741 0.00 0.00 0.00 2.18
3247 4633 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
3248 4634 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
3249 4635 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
3250 4636 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3251 4637 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3252 4638 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3253 4639 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3254 4640 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3255 4641 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3256 4642 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3257 4643 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3258 4644 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3259 4645 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3260 4646 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3261 4647 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3262 4648 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3263 4649 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3264 4650 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3265 4651 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3266 4652 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3267 4653 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3268 4654 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3269 4655 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3270 4656 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3271 4657 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3272 4658 1.223187 TCGTCCGAAAAAGCTTGTCC 58.777 50.000 0.00 0.00 0.00 4.02
3273 4659 2.349532 CCTTCGTCCGAAAAAGCTTGTC 60.350 50.000 0.00 0.00 33.34 3.18
3274 4660 1.602377 CCTTCGTCCGAAAAAGCTTGT 59.398 47.619 0.00 0.00 33.34 3.16
3275 4661 1.069227 CCCTTCGTCCGAAAAAGCTTG 60.069 52.381 0.00 0.00 33.34 4.01
3276 4662 1.235724 CCCTTCGTCCGAAAAAGCTT 58.764 50.000 3.52 0.00 33.34 3.74
3277 4663 0.108019 ACCCTTCGTCCGAAAAAGCT 59.892 50.000 3.52 0.00 33.34 3.74
3278 4664 0.237498 CACCCTTCGTCCGAAAAAGC 59.763 55.000 3.52 0.00 33.34 3.51
3279 4665 1.589803 ACACCCTTCGTCCGAAAAAG 58.410 50.000 3.52 0.00 33.34 2.27
3280 4666 2.158986 TGTACACCCTTCGTCCGAAAAA 60.159 45.455 3.52 0.00 33.34 1.94
3281 4667 1.411977 TGTACACCCTTCGTCCGAAAA 59.588 47.619 3.52 0.00 33.34 2.29
3282 4668 1.039068 TGTACACCCTTCGTCCGAAA 58.961 50.000 3.52 0.00 33.34 3.46
3283 4669 1.203052 GATGTACACCCTTCGTCCGAA 59.797 52.381 0.00 1.81 0.00 4.30
3284 4670 0.813184 GATGTACACCCTTCGTCCGA 59.187 55.000 0.00 0.00 0.00 4.55
3285 4671 0.528924 TGATGTACACCCTTCGTCCG 59.471 55.000 0.00 0.00 0.00 4.79
3286 4672 2.005971 GTGATGTACACCCTTCGTCC 57.994 55.000 0.00 0.00 43.05 4.79
3332 4718 4.395231 TCAGTGGTACGAGTCTACAAGATG 59.605 45.833 0.00 0.00 0.00 2.90
3345 4731 2.814269 CATGGAGTGATCAGTGGTACG 58.186 52.381 8.05 0.00 0.00 3.67
3410 4797 0.536460 ACAAAGCCGAACACCCGATT 60.536 50.000 0.00 0.00 0.00 3.34
3469 4856 4.289410 TCCTCATCCTCACAAATCTTTCCA 59.711 41.667 0.00 0.00 0.00 3.53
3473 4860 5.046288 GGATCCTCATCCTCACAAATCTT 57.954 43.478 3.84 0.00 45.06 2.40
3506 4893 7.043565 CCTCCCAATCATGTTGAATAAAAAGG 58.956 38.462 8.90 0.00 0.00 3.11
3512 4899 4.229353 TGGTCCTCCCAATCATGTTGAATA 59.771 41.667 8.90 0.00 41.50 1.75
3592 4979 1.879372 GCTGCTCGGATGGCATCATTA 60.879 52.381 27.39 11.84 39.07 1.90
3593 4980 1.170919 GCTGCTCGGATGGCATCATT 61.171 55.000 27.39 0.00 39.07 2.57
3594 4981 1.600076 GCTGCTCGGATGGCATCAT 60.600 57.895 27.39 0.00 39.07 2.45
3595 4982 2.203112 GCTGCTCGGATGGCATCA 60.203 61.111 27.39 8.50 39.07 3.07
3596 4983 3.344215 CGCTGCTCGGATGGCATC 61.344 66.667 19.23 19.23 39.07 3.91
3600 4987 3.570638 CTTGCGCTGCTCGGATGG 61.571 66.667 9.73 0.00 38.62 3.51
3601 4988 3.570638 CCTTGCGCTGCTCGGATG 61.571 66.667 9.73 1.32 38.62 3.51
3602 4989 4.845580 CCCTTGCGCTGCTCGGAT 62.846 66.667 9.73 0.00 38.62 4.18
3606 4993 1.997928 GAATTCCCCTTGCGCTGCTC 61.998 60.000 9.73 0.00 0.00 4.26
3628 5015 5.030147 ACCACTAGATCCACTTTGGTGATA 58.970 41.667 0.00 0.00 45.61 2.15
3635 5022 4.780021 AGTCATGACCACTAGATCCACTTT 59.220 41.667 22.21 0.00 0.00 2.66
3646 5034 1.203237 ACCTCCAGAGTCATGACCACT 60.203 52.381 22.21 17.95 0.00 4.00
3679 5067 1.754803 CATGACAAGCCATCTGCCATT 59.245 47.619 0.00 0.00 42.71 3.16
3685 5073 1.813092 GCGATCCATGACAAGCCATCT 60.813 52.381 0.00 0.00 0.00 2.90
3690 5078 2.020131 CAGGCGATCCATGACAAGC 58.980 57.895 0.00 0.00 33.74 4.01
3711 5099 0.179000 AGCTGGCCAGAAATACCGAG 59.821 55.000 37.21 6.97 0.00 4.63
3712 5100 0.107703 CAGCTGGCCAGAAATACCGA 60.108 55.000 37.21 0.00 0.00 4.69
3713 5101 1.097547 CCAGCTGGCCAGAAATACCG 61.098 60.000 37.21 14.21 0.00 4.02
3714 5102 0.753111 CCCAGCTGGCCAGAAATACC 60.753 60.000 37.21 17.23 0.00 2.73
3715 5103 0.255890 TCCCAGCTGGCCAGAAATAC 59.744 55.000 37.21 18.01 0.00 1.89
3716 5104 1.133699 CATCCCAGCTGGCCAGAAATA 60.134 52.381 37.21 16.66 0.00 1.40
3717 5105 0.396695 CATCCCAGCTGGCCAGAAAT 60.397 55.000 37.21 18.13 0.00 2.17
3718 5106 1.000521 CATCCCAGCTGGCCAGAAA 60.001 57.895 37.21 15.53 0.00 2.52
3719 5107 2.202236 GACATCCCAGCTGGCCAGAA 62.202 60.000 37.21 15.17 0.00 3.02
3720 5108 2.611800 ACATCCCAGCTGGCCAGA 60.612 61.111 37.21 19.45 0.00 3.86
3721 5109 2.124403 GACATCCCAGCTGGCCAG 60.124 66.667 29.34 29.34 0.00 4.85
3722 5110 2.274948 GATGACATCCCAGCTGGCCA 62.275 60.000 28.39 16.19 0.00 5.36
3723 5111 1.527844 GATGACATCCCAGCTGGCC 60.528 63.158 28.39 12.95 0.00 5.36
3724 5112 1.527844 GGATGACATCCCAGCTGGC 60.528 63.158 28.39 13.80 43.88 4.85
3725 5113 4.894201 GGATGACATCCCAGCTGG 57.106 61.111 26.87 26.87 43.88 4.85
3733 5121 4.387598 CCCATCTCAAGAAGGATGACATC 58.612 47.826 6.91 6.91 41.05 3.06
3734 5122 3.137913 CCCCATCTCAAGAAGGATGACAT 59.862 47.826 2.88 0.00 41.05 3.06
3735 5123 2.507058 CCCCATCTCAAGAAGGATGACA 59.493 50.000 2.88 0.00 41.05 3.58
3736 5124 2.774234 TCCCCATCTCAAGAAGGATGAC 59.226 50.000 2.88 0.00 41.05 3.06
3737 5125 3.044156 CTCCCCATCTCAAGAAGGATGA 58.956 50.000 2.88 0.00 41.05 2.92
3738 5126 2.106166 CCTCCCCATCTCAAGAAGGATG 59.894 54.545 2.88 0.00 35.03 3.51
3739 5127 2.416638 CCTCCCCATCTCAAGAAGGAT 58.583 52.381 2.88 0.00 35.03 3.24
3740 5128 1.626350 CCCTCCCCATCTCAAGAAGGA 60.626 57.143 2.88 0.71 35.03 3.36
3741 5129 0.842635 CCCTCCCCATCTCAAGAAGG 59.157 60.000 0.00 0.00 32.98 3.46
3742 5130 1.211457 CACCCTCCCCATCTCAAGAAG 59.789 57.143 0.00 0.00 0.00 2.85
3743 5131 1.289160 CACCCTCCCCATCTCAAGAA 58.711 55.000 0.00 0.00 0.00 2.52
3744 5132 1.274703 GCACCCTCCCCATCTCAAGA 61.275 60.000 0.00 0.00 0.00 3.02
3745 5133 1.225704 GCACCCTCCCCATCTCAAG 59.774 63.158 0.00 0.00 0.00 3.02
3746 5134 2.308722 GGCACCCTCCCCATCTCAA 61.309 63.158 0.00 0.00 0.00 3.02
3747 5135 2.692368 GGCACCCTCCCCATCTCA 60.692 66.667 0.00 0.00 0.00 3.27
3748 5136 2.692368 TGGCACCCTCCCCATCTC 60.692 66.667 0.00 0.00 0.00 2.75
3749 5137 2.693864 CTGGCACCCTCCCCATCT 60.694 66.667 0.00 0.00 0.00 2.90
3750 5138 2.692368 TCTGGCACCCTCCCCATC 60.692 66.667 0.00 0.00 0.00 3.51
3751 5139 2.693864 CTCTGGCACCCTCCCCAT 60.694 66.667 0.00 0.00 0.00 4.00
3762 5150 1.578423 GCAGTGACTTTGCTCTGGC 59.422 57.895 0.00 0.00 38.51 4.85
3763 5151 1.239968 GGGCAGTGACTTTGCTCTGG 61.240 60.000 0.00 0.00 38.99 3.86
3764 5152 0.535780 TGGGCAGTGACTTTGCTCTG 60.536 55.000 0.00 0.00 42.56 3.35
3765 5153 0.183492 TTGGGCAGTGACTTTGCTCT 59.817 50.000 0.00 0.00 42.56 4.09
3766 5154 0.312102 GTTGGGCAGTGACTTTGCTC 59.688 55.000 0.00 0.00 42.43 4.26
3767 5155 1.447317 CGTTGGGCAGTGACTTTGCT 61.447 55.000 0.00 0.00 41.27 3.91
3768 5156 1.008538 CGTTGGGCAGTGACTTTGC 60.009 57.895 0.00 0.00 40.80 3.68
3769 5157 1.654220 CCGTTGGGCAGTGACTTTG 59.346 57.895 0.00 0.00 0.00 2.77
3770 5158 1.528309 CCCGTTGGGCAGTGACTTT 60.528 57.895 0.00 0.00 35.35 2.66
3771 5159 2.113139 CCCGTTGGGCAGTGACTT 59.887 61.111 0.00 0.00 35.35 3.01
3804 5192 6.546484 TCTTGGAACCTGAGATTGAAGAATT 58.454 36.000 0.00 0.00 0.00 2.17
3805 5193 6.131972 TCTTGGAACCTGAGATTGAAGAAT 57.868 37.500 0.00 0.00 0.00 2.40
3806 5194 5.567037 TCTTGGAACCTGAGATTGAAGAA 57.433 39.130 0.00 0.00 0.00 2.52
3807 5195 5.013495 ACATCTTGGAACCTGAGATTGAAGA 59.987 40.000 7.28 0.00 0.00 2.87
3808 5196 5.251764 ACATCTTGGAACCTGAGATTGAAG 58.748 41.667 7.28 0.00 0.00 3.02
3809 5197 5.246981 ACATCTTGGAACCTGAGATTGAA 57.753 39.130 7.28 0.00 0.00 2.69
3810 5198 4.916041 ACATCTTGGAACCTGAGATTGA 57.084 40.909 7.28 0.00 0.00 2.57
3811 5199 5.738909 ACTACATCTTGGAACCTGAGATTG 58.261 41.667 7.28 6.62 0.00 2.67
3812 5200 6.897966 TCTACTACATCTTGGAACCTGAGATT 59.102 38.462 7.28 0.00 0.00 2.40
3813 5201 6.322712 GTCTACTACATCTTGGAACCTGAGAT 59.677 42.308 0.00 0.00 0.00 2.75
3814 5202 5.652891 GTCTACTACATCTTGGAACCTGAGA 59.347 44.000 0.00 0.00 0.00 3.27
3815 5203 5.419155 TGTCTACTACATCTTGGAACCTGAG 59.581 44.000 0.00 0.00 31.43 3.35
3816 5204 5.330233 TGTCTACTACATCTTGGAACCTGA 58.670 41.667 0.00 0.00 31.43 3.86
3817 5205 5.419155 TCTGTCTACTACATCTTGGAACCTG 59.581 44.000 0.00 0.00 37.50 4.00
3818 5206 5.580998 TCTGTCTACTACATCTTGGAACCT 58.419 41.667 0.00 0.00 37.50 3.50
3819 5207 5.916661 TCTGTCTACTACATCTTGGAACC 57.083 43.478 0.00 0.00 37.50 3.62
3820 5208 6.926313 ACTTCTGTCTACTACATCTTGGAAC 58.074 40.000 0.00 0.00 37.50 3.62
3821 5209 7.540474 AACTTCTGTCTACTACATCTTGGAA 57.460 36.000 0.00 0.00 37.50 3.53
3822 5210 7.540474 AAACTTCTGTCTACTACATCTTGGA 57.460 36.000 0.00 0.00 37.50 3.53
3823 5211 7.657761 ACAAAACTTCTGTCTACTACATCTTGG 59.342 37.037 0.00 0.00 37.50 3.61
3824 5212 8.491152 CACAAAACTTCTGTCTACTACATCTTG 58.509 37.037 0.00 0.00 37.50 3.02
3825 5213 8.421784 TCACAAAACTTCTGTCTACTACATCTT 58.578 33.333 0.00 0.00 37.50 2.40
3826 5214 7.952671 TCACAAAACTTCTGTCTACTACATCT 58.047 34.615 0.00 0.00 37.50 2.90
3827 5215 8.651588 CATCACAAAACTTCTGTCTACTACATC 58.348 37.037 0.00 0.00 37.50 3.06
3828 5216 7.118390 GCATCACAAAACTTCTGTCTACTACAT 59.882 37.037 0.00 0.00 37.50 2.29
3829 5217 6.423905 GCATCACAAAACTTCTGTCTACTACA 59.576 38.462 0.00 0.00 36.42 2.74
3830 5218 6.423905 TGCATCACAAAACTTCTGTCTACTAC 59.576 38.462 0.00 0.00 0.00 2.73
3831 5219 6.521162 TGCATCACAAAACTTCTGTCTACTA 58.479 36.000 0.00 0.00 0.00 1.82
3832 5220 5.368145 TGCATCACAAAACTTCTGTCTACT 58.632 37.500 0.00 0.00 0.00 2.57
3833 5221 5.237344 ACTGCATCACAAAACTTCTGTCTAC 59.763 40.000 0.00 0.00 0.00 2.59
3834 5222 5.368145 ACTGCATCACAAAACTTCTGTCTA 58.632 37.500 0.00 0.00 0.00 2.59
3835 5223 4.202441 ACTGCATCACAAAACTTCTGTCT 58.798 39.130 0.00 0.00 0.00 3.41
3836 5224 4.035558 TGACTGCATCACAAAACTTCTGTC 59.964 41.667 0.00 0.00 29.99 3.51
3837 5225 3.947196 TGACTGCATCACAAAACTTCTGT 59.053 39.130 0.00 0.00 29.99 3.41
3838 5226 4.556942 TGACTGCATCACAAAACTTCTG 57.443 40.909 0.00 0.00 29.99 3.02
3858 5246 6.861065 AGGTTATGTAGTTTCACAGTTGTG 57.139 37.500 5.91 5.91 46.91 3.33
3859 5247 7.875327 AAAGGTTATGTAGTTTCACAGTTGT 57.125 32.000 0.00 0.00 0.00 3.32
3860 5248 8.504005 CCTAAAGGTTATGTAGTTTCACAGTTG 58.496 37.037 0.00 0.00 0.00 3.16
3861 5249 7.664318 CCCTAAAGGTTATGTAGTTTCACAGTT 59.336 37.037 0.00 0.00 0.00 3.16
3862 5250 7.016858 TCCCTAAAGGTTATGTAGTTTCACAGT 59.983 37.037 0.00 0.00 36.75 3.55
3863 5251 7.333672 GTCCCTAAAGGTTATGTAGTTTCACAG 59.666 40.741 0.00 0.00 36.75 3.66
3864 5252 7.163441 GTCCCTAAAGGTTATGTAGTTTCACA 58.837 38.462 0.00 0.00 36.75 3.58
3865 5253 6.596888 GGTCCCTAAAGGTTATGTAGTTTCAC 59.403 42.308 0.00 0.00 36.75 3.18
3866 5254 6.502863 AGGTCCCTAAAGGTTATGTAGTTTCA 59.497 38.462 0.00 0.00 36.75 2.69
3867 5255 6.955364 AGGTCCCTAAAGGTTATGTAGTTTC 58.045 40.000 0.00 0.00 36.75 2.78
3868 5256 6.964876 AGGTCCCTAAAGGTTATGTAGTTT 57.035 37.500 0.00 0.00 36.75 2.66
3869 5257 6.351626 CGAAGGTCCCTAAAGGTTATGTAGTT 60.352 42.308 0.00 0.00 36.75 2.24
3870 5258 5.128335 CGAAGGTCCCTAAAGGTTATGTAGT 59.872 44.000 0.00 0.00 36.75 2.73
3871 5259 5.361857 TCGAAGGTCCCTAAAGGTTATGTAG 59.638 44.000 0.00 0.00 36.75 2.74
3872 5260 5.127682 GTCGAAGGTCCCTAAAGGTTATGTA 59.872 44.000 0.00 0.00 36.75 2.29
3873 5261 4.081254 GTCGAAGGTCCCTAAAGGTTATGT 60.081 45.833 0.00 0.00 36.75 2.29
3874 5262 4.081309 TGTCGAAGGTCCCTAAAGGTTATG 60.081 45.833 0.00 0.00 36.75 1.90
3875 5263 4.098894 TGTCGAAGGTCCCTAAAGGTTAT 58.901 43.478 0.00 0.00 36.75 1.89
3876 5264 3.509442 TGTCGAAGGTCCCTAAAGGTTA 58.491 45.455 0.00 0.00 36.75 2.85
3877 5265 2.332117 TGTCGAAGGTCCCTAAAGGTT 58.668 47.619 0.00 0.00 36.75 3.50
3878 5266 2.019807 TGTCGAAGGTCCCTAAAGGT 57.980 50.000 0.00 0.00 36.75 3.50
3879 5267 2.500098 TGATGTCGAAGGTCCCTAAAGG 59.500 50.000 0.00 0.00 0.00 3.11
3880 5268 3.887621 TGATGTCGAAGGTCCCTAAAG 57.112 47.619 0.00 0.00 0.00 1.85
3881 5269 4.030913 AGATGATGTCGAAGGTCCCTAAA 58.969 43.478 0.00 0.00 0.00 1.85
3882 5270 3.643237 AGATGATGTCGAAGGTCCCTAA 58.357 45.455 0.00 0.00 0.00 2.69
3883 5271 3.314307 AGATGATGTCGAAGGTCCCTA 57.686 47.619 0.00 0.00 0.00 3.53
3884 5272 2.166907 AGATGATGTCGAAGGTCCCT 57.833 50.000 0.00 0.00 0.00 4.20
3885 5273 4.310769 CAATAGATGATGTCGAAGGTCCC 58.689 47.826 0.00 0.00 0.00 4.46
3886 5274 4.039245 TCCAATAGATGATGTCGAAGGTCC 59.961 45.833 0.00 0.00 0.00 4.46
3887 5275 5.201713 TCCAATAGATGATGTCGAAGGTC 57.798 43.478 0.00 0.00 0.00 3.85
3888 5276 4.651503 ACTCCAATAGATGATGTCGAAGGT 59.348 41.667 0.00 0.00 0.00 3.50
3889 5277 5.207110 ACTCCAATAGATGATGTCGAAGG 57.793 43.478 0.00 0.00 0.00 3.46
3890 5278 5.861251 GCTACTCCAATAGATGATGTCGAAG 59.139 44.000 0.00 0.00 0.00 3.79
3891 5279 5.301805 TGCTACTCCAATAGATGATGTCGAA 59.698 40.000 0.00 0.00 0.00 3.71
3892 5280 4.827284 TGCTACTCCAATAGATGATGTCGA 59.173 41.667 0.00 0.00 0.00 4.20
3893 5281 5.126396 TGCTACTCCAATAGATGATGTCG 57.874 43.478 0.00 0.00 0.00 4.35
3894 5282 7.118971 GGAAATGCTACTCCAATAGATGATGTC 59.881 40.741 0.00 0.00 0.00 3.06
3895 5283 6.939163 GGAAATGCTACTCCAATAGATGATGT 59.061 38.462 0.00 0.00 0.00 3.06
3896 5284 6.938596 TGGAAATGCTACTCCAATAGATGATG 59.061 38.462 0.00 0.00 38.81 3.07
3897 5285 7.083062 TGGAAATGCTACTCCAATAGATGAT 57.917 36.000 0.00 0.00 38.81 2.45
3898 5286 6.499106 TGGAAATGCTACTCCAATAGATGA 57.501 37.500 0.00 0.00 38.81 2.92
3899 5287 6.713903 ACATGGAAATGCTACTCCAATAGATG 59.286 38.462 0.00 2.68 44.77 2.90
3900 5288 6.713903 CACATGGAAATGCTACTCCAATAGAT 59.286 38.462 0.00 0.00 44.77 1.98
3901 5289 6.057533 CACATGGAAATGCTACTCCAATAGA 58.942 40.000 0.00 0.00 44.77 1.98
3902 5290 6.057533 TCACATGGAAATGCTACTCCAATAG 58.942 40.000 0.00 2.80 44.77 1.73
3903 5291 6.000246 TCACATGGAAATGCTACTCCAATA 58.000 37.500 0.00 0.00 44.77 1.90
3904 5292 4.858850 TCACATGGAAATGCTACTCCAAT 58.141 39.130 0.00 0.00 44.77 3.16
3905 5293 4.299586 TCACATGGAAATGCTACTCCAA 57.700 40.909 0.00 0.00 44.77 3.53
3906 5294 3.998913 TCACATGGAAATGCTACTCCA 57.001 42.857 0.00 4.09 45.65 3.86
3907 5295 6.233434 TGATATCACATGGAAATGCTACTCC 58.767 40.000 0.00 0.00 0.00 3.85
3908 5296 7.734924 TTGATATCACATGGAAATGCTACTC 57.265 36.000 4.48 0.00 0.00 2.59
3909 5297 9.970553 ATATTGATATCACATGGAAATGCTACT 57.029 29.630 4.48 0.00 0.00 2.57
3911 5299 9.399797 GGATATTGATATCACATGGAAATGCTA 57.600 33.333 4.48 0.00 40.67 3.49
3912 5300 7.891712 TGGATATTGATATCACATGGAAATGCT 59.108 33.333 4.48 0.00 40.67 3.79
3913 5301 7.972277 GTGGATATTGATATCACATGGAAATGC 59.028 37.037 4.48 0.46 40.67 3.56
3914 5302 8.464404 GGTGGATATTGATATCACATGGAAATG 58.536 37.037 4.48 0.00 40.67 2.32
3915 5303 7.616935 GGGTGGATATTGATATCACATGGAAAT 59.383 37.037 4.48 0.00 40.67 2.17
3916 5304 6.947733 GGGTGGATATTGATATCACATGGAAA 59.052 38.462 4.48 0.00 40.67 3.13
3917 5305 6.045341 TGGGTGGATATTGATATCACATGGAA 59.955 38.462 4.48 0.00 40.67 3.53
3918 5306 5.551189 TGGGTGGATATTGATATCACATGGA 59.449 40.000 4.48 0.00 40.67 3.41
3919 5307 5.649395 GTGGGTGGATATTGATATCACATGG 59.351 44.000 4.48 0.00 40.67 3.66
3920 5308 5.649395 GGTGGGTGGATATTGATATCACATG 59.351 44.000 4.48 0.00 40.67 3.21
3921 5309 5.312974 TGGTGGGTGGATATTGATATCACAT 59.687 40.000 4.48 1.65 40.67 3.21
3922 5310 4.662650 TGGTGGGTGGATATTGATATCACA 59.337 41.667 4.48 0.00 40.67 3.58
3923 5311 5.241403 TGGTGGGTGGATATTGATATCAC 57.759 43.478 4.48 8.37 40.67 3.06
3924 5312 5.792188 AGATGGTGGGTGGATATTGATATCA 59.208 40.000 0.00 0.00 40.67 2.15
3925 5313 6.319048 AGATGGTGGGTGGATATTGATATC 57.681 41.667 0.00 0.00 38.70 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.