Multiple sequence alignment - TraesCS6D01G133300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G133300 chr6D 100.000 4029 0 0 1 4029 100940483 100936455 0.000000e+00 7441.0
1 TraesCS6D01G133300 chr6B 93.451 3329 137 22 733 4029 185016656 185013377 0.000000e+00 4865.0
2 TraesCS6D01G133300 chr6B 91.118 304 19 3 9 312 185017282 185016987 4.850000e-109 405.0
3 TraesCS6D01G133300 chr6A 93.240 2870 127 25 473 3329 121653188 121650373 0.000000e+00 4163.0
4 TraesCS6D01G133300 chr6A 92.169 498 22 4 3325 3808 121643806 121643312 0.000000e+00 688.0
5 TraesCS6D01G133300 chr6A 91.143 350 24 1 9 351 121653986 121653637 6.100000e-128 468.0
6 TraesCS6D01G133300 chr6A 90.476 84 7 1 3946 4029 121643279 121643197 4.260000e-20 110.0
7 TraesCS6D01G133300 chr6A 93.750 48 3 0 3841 3888 121643317 121643270 5.590000e-09 73.1
8 TraesCS6D01G133300 chr1B 81.646 899 108 15 2340 3222 56133671 56132814 0.000000e+00 693.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G133300 chr6D 100936455 100940483 4028 True 7441.000000 7441 100.000000 1 4029 1 chr6D.!!$R1 4028
1 TraesCS6D01G133300 chr6B 185013377 185017282 3905 True 2635.000000 4865 92.284500 9 4029 2 chr6B.!!$R1 4020
2 TraesCS6D01G133300 chr6A 121650373 121653986 3613 True 2315.500000 4163 92.191500 9 3329 2 chr6A.!!$R2 3320
3 TraesCS6D01G133300 chr6A 121643197 121643806 609 True 290.366667 688 92.131667 3325 4029 3 chr6A.!!$R1 704
4 TraesCS6D01G133300 chr1B 56132814 56133671 857 True 693.000000 693 81.646000 2340 3222 1 chr1B.!!$R1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 1045 0.107654 CGGAACAATGAGTCCCCCTC 60.108 60.0 0.00 0.0 40.89 4.30 F
2091 2430 1.475403 ATGGCAGTAGTACGCTCACT 58.525 50.0 13.99 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2584 0.184933 CTGTCACAAACCTCCCCCAA 59.815 55.0 0.0 0.0 0.0 4.12 R
3906 4291 0.243907 ACTGAGACGACGAACCCATG 59.756 55.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.567585 CACGCCCCCAAATTTCAAAATTT 59.432 39.130 7.47 7.47 46.42 1.82
122 123 0.745128 TTCGAAACGCCCAGTGTTGT 60.745 50.000 0.00 0.00 36.34 3.32
140 141 0.600255 GTACTGTTGACGCACCAGCT 60.600 55.000 4.74 0.00 39.10 4.24
144 145 0.880278 TGTTGACGCACCAGCTCTTC 60.880 55.000 0.00 0.00 39.10 2.87
164 165 2.347490 CCCAACCCCGTCACTGAG 59.653 66.667 0.00 0.00 0.00 3.35
175 176 1.001974 CGTCACTGAGAAATGGGACCA 59.998 52.381 0.00 0.00 0.00 4.02
197 198 3.776969 AGATGGTGCACTCCTGATTTCTA 59.223 43.478 17.98 0.00 0.00 2.10
214 215 0.811915 CTACTCCACTGGGTCTGACG 59.188 60.000 1.07 0.00 34.93 4.35
327 387 0.804989 CCACGCTCCCAGTTCAAATC 59.195 55.000 0.00 0.00 0.00 2.17
329 389 2.154462 CACGCTCCCAGTTCAAATCTT 58.846 47.619 0.00 0.00 0.00 2.40
347 412 6.566079 AATCTTGAGAGAGAGAGAGAGAGA 57.434 41.667 0.00 0.00 34.85 3.10
351 416 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
355 420 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
365 430 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
366 431 5.276440 AGAGAGAGAGAGAGAGAGAGAGTT 58.724 45.833 0.00 0.00 0.00 3.01
367 432 5.723887 AGAGAGAGAGAGAGAGAGAGAGTTT 59.276 44.000 0.00 0.00 0.00 2.66
368 433 6.214412 AGAGAGAGAGAGAGAGAGAGAGTTTT 59.786 42.308 0.00 0.00 0.00 2.43
369 434 6.410540 AGAGAGAGAGAGAGAGAGAGTTTTC 58.589 44.000 0.00 0.00 0.00 2.29
370 435 6.214412 AGAGAGAGAGAGAGAGAGAGTTTTCT 59.786 42.308 0.00 0.00 36.01 2.52
371 436 6.176183 AGAGAGAGAGAGAGAGAGTTTTCTG 58.824 44.000 0.00 0.00 32.53 3.02
372 437 4.702131 AGAGAGAGAGAGAGAGTTTTCTGC 59.298 45.833 0.00 0.00 32.53 4.26
373 438 3.763897 AGAGAGAGAGAGAGTTTTCTGCC 59.236 47.826 0.00 0.00 32.53 4.85
374 439 3.505386 AGAGAGAGAGAGTTTTCTGCCA 58.495 45.455 0.00 0.00 32.53 4.92
375 440 3.258123 AGAGAGAGAGAGTTTTCTGCCAC 59.742 47.826 0.00 0.00 32.53 5.01
376 441 2.968574 AGAGAGAGAGTTTTCTGCCACA 59.031 45.455 0.00 0.00 32.53 4.17
377 442 3.063485 GAGAGAGAGTTTTCTGCCACAC 58.937 50.000 0.00 0.00 32.53 3.82
378 443 1.795286 GAGAGAGTTTTCTGCCACACG 59.205 52.381 0.00 0.00 32.53 4.49
379 444 0.235926 GAGAGTTTTCTGCCACACGC 59.764 55.000 0.00 0.00 32.53 5.34
380 445 0.179045 AGAGTTTTCTGCCACACGCT 60.179 50.000 0.00 0.00 38.78 5.07
381 446 0.235926 GAGTTTTCTGCCACACGCTC 59.764 55.000 0.00 0.00 38.78 5.03
382 447 1.166531 AGTTTTCTGCCACACGCTCC 61.167 55.000 0.00 0.00 38.78 4.70
383 448 1.896660 TTTTCTGCCACACGCTCCC 60.897 57.895 0.00 0.00 38.78 4.30
384 449 2.337879 TTTTCTGCCACACGCTCCCT 62.338 55.000 0.00 0.00 38.78 4.20
385 450 2.731691 TTTCTGCCACACGCTCCCTC 62.732 60.000 0.00 0.00 38.78 4.30
386 451 3.699894 CTGCCACACGCTCCCTCT 61.700 66.667 0.00 0.00 38.78 3.69
387 452 3.655810 CTGCCACACGCTCCCTCTC 62.656 68.421 0.00 0.00 38.78 3.20
388 453 4.459089 GCCACACGCTCCCTCTCC 62.459 72.222 0.00 0.00 0.00 3.71
389 454 2.997315 CCACACGCTCCCTCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
390 455 2.575993 CACACGCTCCCTCTCCAG 59.424 66.667 0.00 0.00 0.00 3.86
391 456 2.118513 ACACGCTCCCTCTCCAGT 59.881 61.111 0.00 0.00 0.00 4.00
392 457 1.534235 ACACGCTCCCTCTCCAGTT 60.534 57.895 0.00 0.00 0.00 3.16
393 458 1.216710 CACGCTCCCTCTCCAGTTC 59.783 63.158 0.00 0.00 0.00 3.01
394 459 1.228894 ACGCTCCCTCTCCAGTTCA 60.229 57.895 0.00 0.00 0.00 3.18
395 460 0.832135 ACGCTCCCTCTCCAGTTCAA 60.832 55.000 0.00 0.00 0.00 2.69
396 461 0.321671 CGCTCCCTCTCCAGTTCAAA 59.678 55.000 0.00 0.00 0.00 2.69
397 462 1.065854 CGCTCCCTCTCCAGTTCAAAT 60.066 52.381 0.00 0.00 0.00 2.32
398 463 2.637947 GCTCCCTCTCCAGTTCAAATC 58.362 52.381 0.00 0.00 0.00 2.17
399 464 2.238395 GCTCCCTCTCCAGTTCAAATCT 59.762 50.000 0.00 0.00 0.00 2.40
400 465 3.308046 GCTCCCTCTCCAGTTCAAATCTT 60.308 47.826 0.00 0.00 0.00 2.40
401 466 4.260170 CTCCCTCTCCAGTTCAAATCTTG 58.740 47.826 0.00 0.00 0.00 3.02
402 467 3.909995 TCCCTCTCCAGTTCAAATCTTGA 59.090 43.478 0.00 0.00 38.04 3.02
403 468 4.019860 TCCCTCTCCAGTTCAAATCTTGAG 60.020 45.833 0.00 0.00 41.38 3.02
404 469 4.019860 CCCTCTCCAGTTCAAATCTTGAGA 60.020 45.833 0.00 0.00 41.38 3.27
405 470 4.934602 CCTCTCCAGTTCAAATCTTGAGAC 59.065 45.833 0.00 0.00 41.38 3.36
406 471 5.279910 CCTCTCCAGTTCAAATCTTGAGACT 60.280 44.000 0.00 0.00 41.38 3.24
407 472 6.179906 TCTCCAGTTCAAATCTTGAGACTT 57.820 37.500 0.00 0.00 41.38 3.01
408 473 5.994054 TCTCCAGTTCAAATCTTGAGACTTG 59.006 40.000 0.00 0.00 41.38 3.16
409 474 5.928976 TCCAGTTCAAATCTTGAGACTTGA 58.071 37.500 1.12 1.12 38.34 3.02
410 475 5.994054 TCCAGTTCAAATCTTGAGACTTGAG 59.006 40.000 5.23 0.00 40.66 3.02
411 476 5.994054 CCAGTTCAAATCTTGAGACTTGAGA 59.006 40.000 5.23 0.00 40.66 3.27
412 477 6.147492 CCAGTTCAAATCTTGAGACTTGAGAG 59.853 42.308 5.23 1.18 40.66 3.20
413 478 6.927936 CAGTTCAAATCTTGAGACTTGAGAGA 59.072 38.462 5.23 0.00 40.66 3.10
414 479 7.116662 CAGTTCAAATCTTGAGACTTGAGAGAG 59.883 40.741 5.23 0.00 40.66 3.20
415 480 6.907853 TCAAATCTTGAGACTTGAGAGAGA 57.092 37.500 1.12 0.00 35.66 3.10
416 481 6.923012 TCAAATCTTGAGACTTGAGAGAGAG 58.077 40.000 1.12 0.00 35.66 3.20
417 482 4.989279 ATCTTGAGACTTGAGAGAGAGC 57.011 45.455 0.00 0.00 0.00 4.09
418 483 2.746904 TCTTGAGACTTGAGAGAGAGCG 59.253 50.000 0.00 0.00 0.00 5.03
419 484 2.481289 TGAGACTTGAGAGAGAGCGA 57.519 50.000 0.00 0.00 0.00 4.93
420 485 2.355197 TGAGACTTGAGAGAGAGCGAG 58.645 52.381 0.00 0.00 0.00 5.03
421 486 1.064060 GAGACTTGAGAGAGAGCGAGC 59.936 57.143 0.00 0.00 0.00 5.03
422 487 0.248054 GACTTGAGAGAGAGCGAGCG 60.248 60.000 0.00 0.00 0.00 5.03
439 774 2.362397 GAGCGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
440 775 2.363680 AGCGAGAGAGAGAGAGAGAGAG 59.636 54.545 0.00 0.00 0.00 3.20
441 776 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
442 777 3.797184 GCGAGAGAGAGAGAGAGAGAGAC 60.797 56.522 0.00 0.00 0.00 3.36
443 778 3.381590 CGAGAGAGAGAGAGAGAGAGACA 59.618 52.174 0.00 0.00 0.00 3.41
444 779 4.688021 GAGAGAGAGAGAGAGAGAGACAC 58.312 52.174 0.00 0.00 0.00 3.67
445 780 4.096681 AGAGAGAGAGAGAGAGAGACACA 58.903 47.826 0.00 0.00 0.00 3.72
446 781 4.081420 AGAGAGAGAGAGAGAGAGACACAC 60.081 50.000 0.00 0.00 0.00 3.82
447 782 3.582647 AGAGAGAGAGAGAGAGACACACA 59.417 47.826 0.00 0.00 0.00 3.72
448 783 3.674997 AGAGAGAGAGAGAGACACACAC 58.325 50.000 0.00 0.00 0.00 3.82
449 784 3.072330 AGAGAGAGAGAGAGACACACACA 59.928 47.826 0.00 0.00 0.00 3.72
450 785 3.146066 AGAGAGAGAGAGACACACACAC 58.854 50.000 0.00 0.00 0.00 3.82
451 786 2.881513 GAGAGAGAGAGACACACACACA 59.118 50.000 0.00 0.00 0.00 3.72
452 787 2.621055 AGAGAGAGAGACACACACACAC 59.379 50.000 0.00 0.00 0.00 3.82
453 788 2.359214 GAGAGAGAGACACACACACACA 59.641 50.000 0.00 0.00 0.00 3.72
454 789 2.099921 AGAGAGAGACACACACACACAC 59.900 50.000 0.00 0.00 0.00 3.82
455 790 1.824852 AGAGAGACACACACACACACA 59.175 47.619 0.00 0.00 0.00 3.72
456 791 1.927174 GAGAGACACACACACACACAC 59.073 52.381 0.00 0.00 0.00 3.82
457 792 1.275010 AGAGACACACACACACACACA 59.725 47.619 0.00 0.00 0.00 3.72
458 793 1.393539 GAGACACACACACACACACAC 59.606 52.381 0.00 0.00 0.00 3.82
459 794 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
460 795 1.128507 GACACACACACACACACACAG 59.871 52.381 0.00 0.00 0.00 3.66
461 796 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
464 799 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
465 800 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
466 801 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
468 803 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
469 804 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
471 806 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
491 826 1.143684 AGAGGCCTTGCAAGTTCTTCA 59.856 47.619 24.35 0.00 0.00 3.02
560 895 3.308323 GTCTTGTTCTGCATCGATTCCTC 59.692 47.826 0.00 0.00 0.00 3.71
562 897 1.212616 GTTCTGCATCGATTCCTCGG 58.787 55.000 0.00 0.00 45.10 4.63
563 898 0.824109 TTCTGCATCGATTCCTCGGT 59.176 50.000 0.00 0.00 45.10 4.69
564 899 0.385751 TCTGCATCGATTCCTCGGTC 59.614 55.000 0.00 0.00 45.10 4.79
566 901 0.824109 TGCATCGATTCCTCGGTCTT 59.176 50.000 0.00 0.00 45.10 3.01
567 902 1.207089 TGCATCGATTCCTCGGTCTTT 59.793 47.619 0.00 0.00 45.10 2.52
568 903 2.280628 GCATCGATTCCTCGGTCTTTT 58.719 47.619 0.00 0.00 45.10 2.27
569 904 3.118920 TGCATCGATTCCTCGGTCTTTTA 60.119 43.478 0.00 0.00 45.10 1.52
570 905 3.245519 GCATCGATTCCTCGGTCTTTTAC 59.754 47.826 0.00 0.00 45.10 2.01
571 906 4.683832 CATCGATTCCTCGGTCTTTTACT 58.316 43.478 0.00 0.00 45.10 2.24
572 907 4.367386 TCGATTCCTCGGTCTTTTACTC 57.633 45.455 0.00 0.00 45.10 2.59
578 913 5.803237 TCCTCGGTCTTTTACTCTTTCTT 57.197 39.130 0.00 0.00 0.00 2.52
579 914 5.780984 TCCTCGGTCTTTTACTCTTTCTTC 58.219 41.667 0.00 0.00 0.00 2.87
584 919 7.214381 TCGGTCTTTTACTCTTTCTTCATTGA 58.786 34.615 0.00 0.00 0.00 2.57
597 932 1.766951 TCATTGAAAAGGGAGGGGGA 58.233 50.000 0.00 0.00 0.00 4.81
600 935 3.078918 TCATTGAAAAGGGAGGGGGATTT 59.921 43.478 0.00 0.00 0.00 2.17
636 971 1.987770 GCGCGCTGTGTAGTTTAGTTA 59.012 47.619 26.67 0.00 0.00 2.24
637 972 2.027688 GCGCGCTGTGTAGTTTAGTTAG 59.972 50.000 26.67 0.00 0.00 2.34
638 973 3.240069 CGCGCTGTGTAGTTTAGTTAGT 58.760 45.455 5.56 0.00 0.00 2.24
639 974 3.300066 CGCGCTGTGTAGTTTAGTTAGTC 59.700 47.826 5.56 0.00 0.00 2.59
654 989 1.570813 TAGTCGCGATTGGATTGCTG 58.429 50.000 14.06 0.00 37.53 4.41
663 998 2.291209 TTGGATTGCTGCTTCCTGAA 57.709 45.000 18.53 7.11 32.95 3.02
664 999 2.519771 TGGATTGCTGCTTCCTGAAT 57.480 45.000 18.53 2.70 32.95 2.57
665 1000 2.372264 TGGATTGCTGCTTCCTGAATC 58.628 47.619 18.53 10.41 32.95 2.52
666 1001 1.680207 GGATTGCTGCTTCCTGAATCC 59.320 52.381 10.28 10.28 36.34 3.01
667 1002 2.652590 GATTGCTGCTTCCTGAATCCT 58.347 47.619 0.00 0.00 0.00 3.24
668 1003 1.830279 TTGCTGCTTCCTGAATCCTG 58.170 50.000 0.00 0.00 0.00 3.86
669 1004 0.986527 TGCTGCTTCCTGAATCCTGA 59.013 50.000 0.00 0.00 0.00 3.86
670 1005 1.339438 TGCTGCTTCCTGAATCCTGAC 60.339 52.381 0.00 0.00 0.00 3.51
680 1015 3.329542 AATCCTGACGCGGCCATGT 62.330 57.895 10.82 0.00 0.00 3.21
710 1045 0.107654 CGGAACAATGAGTCCCCCTC 60.108 60.000 0.00 0.00 40.89 4.30
717 1052 2.243221 CAATGAGTCCCCCTCCAAAGAT 59.757 50.000 0.00 0.00 39.65 2.40
762 1097 7.317390 TCTGACATTCATTTCATGATTTGGTG 58.683 34.615 0.00 3.75 39.39 4.17
860 1199 3.416955 GGCCAATTTGCCGTTACAG 57.583 52.632 4.56 0.00 42.54 2.74
868 1207 3.612472 TTTGCCGTTACAGCTGTTTAC 57.388 42.857 27.06 21.09 0.00 2.01
875 1214 4.201783 CCGTTACAGCTGTTTACTTATGCC 60.202 45.833 27.06 0.00 0.00 4.40
918 1257 4.452114 GCCAAATTTTTCGCCTGAATCTTT 59.548 37.500 0.00 0.00 33.20 2.52
934 1273 5.598005 TGAATCTTTGGTTTGAATCACAGGT 59.402 36.000 0.00 0.00 0.00 4.00
977 1316 1.937546 GCTGCATTTTCCTGTCCCGG 61.938 60.000 0.00 0.00 0.00 5.73
1566 1905 2.432456 GCGATGCACGACAGGTCA 60.432 61.111 11.94 0.00 45.77 4.02
1581 1920 2.359354 TCAACCCGGTCCAATGCG 60.359 61.111 0.00 0.00 0.00 4.73
2091 2430 1.475403 ATGGCAGTAGTACGCTCACT 58.525 50.000 13.99 0.00 0.00 3.41
2169 2508 4.019174 CAAACAGGAGGTTATGGAGCAAT 58.981 43.478 0.00 0.00 39.29 3.56
2200 2539 2.496899 TGTTTCTCTCAAGGATGGCC 57.503 50.000 0.00 0.00 0.00 5.36
2245 2584 2.157738 GCAAGTGCCTTGAAGATGACT 58.842 47.619 16.28 0.00 43.42 3.41
2286 2625 2.034001 CGAAGTAACCGATGCCGATTTC 60.034 50.000 0.00 0.00 38.22 2.17
2310 2649 0.890542 GCACTGGCACATTCACAGGA 60.891 55.000 0.00 0.00 38.20 3.86
2335 2674 0.605319 TTCAGCTAGCCCCAACAACG 60.605 55.000 12.13 0.00 0.00 4.10
2359 2698 1.418334 ATCAAGAGATGAGACCCCCG 58.582 55.000 0.00 0.00 42.53 5.73
2397 2740 6.202954 ACATAACGAAATGCCTATACTGCTTC 59.797 38.462 0.00 0.00 0.00 3.86
2418 2761 9.474920 TGCTTCAGTTTTGATTCGAAAAATATT 57.525 25.926 0.00 0.00 32.27 1.28
2419 2762 9.731519 GCTTCAGTTTTGATTCGAAAAATATTG 57.268 29.630 0.00 3.19 32.27 1.90
2554 2897 2.239907 TCTCCGATCTCTCCAGAGTTCA 59.760 50.000 12.92 0.00 42.60 3.18
2671 3023 7.180229 TCAGATCAGGAACATAAGGAACTAACA 59.820 37.037 0.00 0.00 38.49 2.41
2727 3079 1.219393 GCAAGACCGAAGAGGGGAG 59.781 63.158 0.00 0.00 46.96 4.30
2913 3265 1.981495 CAGAGGGAAGACCAGGAAGTT 59.019 52.381 0.00 0.00 43.89 2.66
2914 3266 2.027653 CAGAGGGAAGACCAGGAAGTTC 60.028 54.545 0.00 0.00 43.89 3.01
3166 3525 6.869913 CCTTGATATGCTTGTTGATTTTGTGT 59.130 34.615 0.00 0.00 0.00 3.72
3207 3575 1.024271 TTGTGTTCCTGTGCTGAAGC 58.976 50.000 0.00 0.00 42.50 3.86
3224 3592 6.442112 GCTGAAGCAATTACTTGACTTTCTT 58.558 36.000 0.00 0.00 41.59 2.52
3299 3667 7.285172 AGTGCATTATTTTACAGATACATGCCA 59.715 33.333 0.00 0.00 35.88 4.92
3339 3707 3.035055 TCCGAAGTACCATATCCCACA 57.965 47.619 0.00 0.00 0.00 4.17
3340 3708 2.963101 TCCGAAGTACCATATCCCACAG 59.037 50.000 0.00 0.00 0.00 3.66
3409 3777 6.146601 TGCTTGATTGTTCTGAAAACATCA 57.853 33.333 0.00 0.00 36.38 3.07
3492 3860 0.899717 ATCCTGCCGGCAAACACAAT 60.900 50.000 32.09 14.06 0.00 2.71
3522 3890 7.418827 CCTCTACTCCATCATGAAGAAAGTGAT 60.419 40.741 0.00 0.00 33.08 3.06
3555 3923 1.569493 CGAACTCGTTGCTTGGTGG 59.431 57.895 0.00 0.00 34.11 4.61
3652 4020 0.871057 GGTGCACACTCTTTCTCAGC 59.129 55.000 20.43 0.00 0.00 4.26
3678 4046 4.742201 CCGCCTGTCGTGGTCCTG 62.742 72.222 0.00 0.00 37.36 3.86
3762 4147 7.120138 GTCCCATTTCAAGTTTACCTCGAATTA 59.880 37.037 0.00 0.00 0.00 1.40
3769 4154 3.773119 AGTTTACCTCGAATTAGGGCAGA 59.227 43.478 0.00 0.00 41.32 4.26
3775 4160 1.006832 CGAATTAGGGCAGACCAACG 58.993 55.000 0.00 0.00 43.89 4.10
3811 4196 2.079158 CTTGGGTGTGATGCTGTACAG 58.921 52.381 18.93 18.93 0.00 2.74
3837 4222 0.602638 CAGCCTTGCGGTACACTGAA 60.603 55.000 0.00 0.00 0.00 3.02
3843 4228 3.242739 CCTTGCGGTACACTGAATAATGC 60.243 47.826 0.00 0.00 0.00 3.56
3906 4291 3.290948 TGGCTGTATTGGTATGGGAAC 57.709 47.619 0.00 0.00 0.00 3.62
3925 4310 0.243907 CATGGGTTCGTCGTCTCAGT 59.756 55.000 0.00 0.00 0.00 3.41
3984 4369 2.585869 GGATGCGCGTCGTACATGG 61.586 63.158 22.62 0.00 0.00 3.66
4016 4401 2.969806 CTGTGCATCAAACGCGGCT 61.970 57.895 12.47 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.056250 AGCCTATTGACTGACACTGACTG 60.056 47.826 0.00 0.00 0.00 3.51
1 2 3.169099 AGCCTATTGACTGACACTGACT 58.831 45.455 0.00 0.00 0.00 3.41
2 3 3.516615 GAGCCTATTGACTGACACTGAC 58.483 50.000 0.00 0.00 0.00 3.51
3 4 2.497675 GGAGCCTATTGACTGACACTGA 59.502 50.000 0.00 0.00 0.00 3.41
4 5 2.736719 CGGAGCCTATTGACTGACACTG 60.737 54.545 0.00 0.00 0.00 3.66
5 6 1.478510 CGGAGCCTATTGACTGACACT 59.521 52.381 0.00 0.00 0.00 3.55
6 7 1.927895 CGGAGCCTATTGACTGACAC 58.072 55.000 0.00 0.00 0.00 3.67
140 141 2.852075 ACGGGGTTGGGCAGAAGA 60.852 61.111 0.00 0.00 0.00 2.87
144 145 3.953775 AGTGACGGGGTTGGGCAG 61.954 66.667 0.00 0.00 0.00 4.85
175 176 2.575279 AGAAATCAGGAGTGCACCATCT 59.425 45.455 14.63 5.77 0.00 2.90
197 198 1.908793 CCGTCAGACCCAGTGGAGT 60.909 63.158 11.95 6.89 34.81 3.85
214 215 1.172812 ACTTTTCTCACGCTTGGCCC 61.173 55.000 0.00 0.00 0.00 5.80
327 387 5.362143 TCTCTCTCTCTCTCTCTCTCTCAAG 59.638 48.000 0.00 0.00 0.00 3.02
329 389 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
347 412 6.176183 CAGAAAACTCTCTCTCTCTCTCTCT 58.824 44.000 0.00 0.00 0.00 3.10
351 416 3.763897 GGCAGAAAACTCTCTCTCTCTCT 59.236 47.826 0.00 0.00 0.00 3.10
355 420 2.968574 TGTGGCAGAAAACTCTCTCTCT 59.031 45.455 0.00 0.00 0.00 3.10
371 436 4.459089 GGAGAGGGAGCGTGTGGC 62.459 72.222 0.00 0.00 44.05 5.01
372 437 2.997315 TGGAGAGGGAGCGTGTGG 60.997 66.667 0.00 0.00 0.00 4.17
373 438 1.821061 AACTGGAGAGGGAGCGTGTG 61.821 60.000 0.00 0.00 0.00 3.82
374 439 1.534235 AACTGGAGAGGGAGCGTGT 60.534 57.895 0.00 0.00 0.00 4.49
375 440 1.216710 GAACTGGAGAGGGAGCGTG 59.783 63.158 0.00 0.00 0.00 5.34
376 441 0.832135 TTGAACTGGAGAGGGAGCGT 60.832 55.000 0.00 0.00 0.00 5.07
377 442 0.321671 TTTGAACTGGAGAGGGAGCG 59.678 55.000 0.00 0.00 0.00 5.03
378 443 2.238395 AGATTTGAACTGGAGAGGGAGC 59.762 50.000 0.00 0.00 0.00 4.70
379 444 4.019860 TCAAGATTTGAACTGGAGAGGGAG 60.020 45.833 0.00 0.00 36.59 4.30
380 445 3.909995 TCAAGATTTGAACTGGAGAGGGA 59.090 43.478 0.00 0.00 36.59 4.20
381 446 4.019860 TCTCAAGATTTGAACTGGAGAGGG 60.020 45.833 0.00 0.00 38.89 4.30
382 447 4.934602 GTCTCAAGATTTGAACTGGAGAGG 59.065 45.833 0.00 0.00 42.73 3.69
383 448 5.792741 AGTCTCAAGATTTGAACTGGAGAG 58.207 41.667 0.00 0.00 42.73 3.20
384 449 5.815233 AGTCTCAAGATTTGAACTGGAGA 57.185 39.130 0.00 0.00 40.72 3.71
385 450 5.994054 TCAAGTCTCAAGATTTGAACTGGAG 59.006 40.000 13.60 0.00 44.26 3.86
386 451 5.928976 TCAAGTCTCAAGATTTGAACTGGA 58.071 37.500 13.60 0.00 44.26 3.86
387 452 5.994054 TCTCAAGTCTCAAGATTTGAACTGG 59.006 40.000 15.88 7.35 45.70 4.00
388 453 6.927936 TCTCTCAAGTCTCAAGATTTGAACTG 59.072 38.462 15.88 10.38 45.70 3.16
389 454 7.015098 TCTCTCTCAAGTCTCAAGATTTGAACT 59.985 37.037 15.88 0.00 45.70 3.01
390 455 7.151308 TCTCTCTCAAGTCTCAAGATTTGAAC 58.849 38.462 15.88 0.00 45.70 3.18
391 456 7.295322 TCTCTCTCAAGTCTCAAGATTTGAA 57.705 36.000 15.88 8.63 45.70 2.69
392 457 6.572119 GCTCTCTCTCAAGTCTCAAGATTTGA 60.572 42.308 14.76 14.76 44.77 2.69
393 458 5.577945 GCTCTCTCTCAAGTCTCAAGATTTG 59.422 44.000 8.51 8.51 41.37 2.32
394 459 5.622007 CGCTCTCTCTCAAGTCTCAAGATTT 60.622 44.000 0.00 0.00 0.00 2.17
395 460 4.142403 CGCTCTCTCTCAAGTCTCAAGATT 60.142 45.833 0.00 0.00 0.00 2.40
396 461 3.378112 CGCTCTCTCTCAAGTCTCAAGAT 59.622 47.826 0.00 0.00 0.00 2.40
397 462 2.746904 CGCTCTCTCTCAAGTCTCAAGA 59.253 50.000 0.00 0.00 0.00 3.02
398 463 2.746904 TCGCTCTCTCTCAAGTCTCAAG 59.253 50.000 0.00 0.00 0.00 3.02
399 464 2.746904 CTCGCTCTCTCTCAAGTCTCAA 59.253 50.000 0.00 0.00 0.00 3.02
400 465 2.355197 CTCGCTCTCTCTCAAGTCTCA 58.645 52.381 0.00 0.00 0.00 3.27
401 466 1.064060 GCTCGCTCTCTCTCAAGTCTC 59.936 57.143 0.00 0.00 0.00 3.36
402 467 1.094785 GCTCGCTCTCTCTCAAGTCT 58.905 55.000 0.00 0.00 0.00 3.24
403 468 0.248054 CGCTCGCTCTCTCTCAAGTC 60.248 60.000 0.00 0.00 0.00 3.01
404 469 0.675208 TCGCTCGCTCTCTCTCAAGT 60.675 55.000 0.00 0.00 0.00 3.16
405 470 0.027979 CTCGCTCGCTCTCTCTCAAG 59.972 60.000 0.00 0.00 0.00 3.02
406 471 0.391793 TCTCGCTCGCTCTCTCTCAA 60.392 55.000 0.00 0.00 0.00 3.02
407 472 0.809636 CTCTCGCTCGCTCTCTCTCA 60.810 60.000 0.00 0.00 0.00 3.27
408 473 0.529773 TCTCTCGCTCGCTCTCTCTC 60.530 60.000 0.00 0.00 0.00 3.20
409 474 0.530650 CTCTCTCGCTCGCTCTCTCT 60.531 60.000 0.00 0.00 0.00 3.10
410 475 0.529773 TCTCTCTCGCTCGCTCTCTC 60.530 60.000 0.00 0.00 0.00 3.20
411 476 0.530650 CTCTCTCTCGCTCGCTCTCT 60.531 60.000 0.00 0.00 0.00 3.10
412 477 0.529773 TCTCTCTCTCGCTCGCTCTC 60.530 60.000 0.00 0.00 0.00 3.20
413 478 0.530650 CTCTCTCTCTCGCTCGCTCT 60.531 60.000 0.00 0.00 0.00 4.09
414 479 0.529773 TCTCTCTCTCTCGCTCGCTC 60.530 60.000 0.00 0.00 0.00 5.03
415 480 0.530650 CTCTCTCTCTCTCGCTCGCT 60.531 60.000 0.00 0.00 0.00 4.93
416 481 0.529773 TCTCTCTCTCTCTCGCTCGC 60.530 60.000 0.00 0.00 0.00 5.03
417 482 1.067060 TCTCTCTCTCTCTCTCGCTCG 59.933 57.143 0.00 0.00 0.00 5.03
418 483 2.362397 TCTCTCTCTCTCTCTCTCGCTC 59.638 54.545 0.00 0.00 0.00 5.03
419 484 2.363680 CTCTCTCTCTCTCTCTCTCGCT 59.636 54.545 0.00 0.00 0.00 4.93
420 485 2.362397 TCTCTCTCTCTCTCTCTCTCGC 59.638 54.545 0.00 0.00 0.00 5.03
421 486 3.381590 TGTCTCTCTCTCTCTCTCTCTCG 59.618 52.174 0.00 0.00 0.00 4.04
422 487 4.160439 TGTGTCTCTCTCTCTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
439 774 1.270571 TGTGTGTGTGTGTGTGTGTCT 60.271 47.619 0.00 0.00 0.00 3.41
440 775 1.128507 CTGTGTGTGTGTGTGTGTGTC 59.871 52.381 0.00 0.00 0.00 3.67
441 776 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
442 777 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
443 778 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
444 779 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
445 780 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
446 781 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
447 782 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
448 783 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
449 784 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
450 785 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
451 786 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
452 787 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
453 788 3.307691 CCTCTCTCTCTCTCTCTGTGTGT 60.308 52.174 0.00 0.00 0.00 3.72
454 789 3.273434 CCTCTCTCTCTCTCTCTGTGTG 58.727 54.545 0.00 0.00 0.00 3.82
455 790 2.356125 GCCTCTCTCTCTCTCTCTGTGT 60.356 54.545 0.00 0.00 0.00 3.72
456 791 2.292267 GCCTCTCTCTCTCTCTCTGTG 58.708 57.143 0.00 0.00 0.00 3.66
457 792 1.212935 GGCCTCTCTCTCTCTCTCTGT 59.787 57.143 0.00 0.00 0.00 3.41
458 793 1.492176 AGGCCTCTCTCTCTCTCTCTG 59.508 57.143 0.00 0.00 0.00 3.35
459 794 1.898863 AGGCCTCTCTCTCTCTCTCT 58.101 55.000 0.00 0.00 0.00 3.10
460 795 2.301346 CAAGGCCTCTCTCTCTCTCTC 58.699 57.143 5.23 0.00 0.00 3.20
461 796 1.686115 GCAAGGCCTCTCTCTCTCTCT 60.686 57.143 5.23 0.00 0.00 3.10
464 799 0.901124 TTGCAAGGCCTCTCTCTCTC 59.099 55.000 5.23 0.00 0.00 3.20
465 800 0.903942 CTTGCAAGGCCTCTCTCTCT 59.096 55.000 19.14 0.00 0.00 3.10
466 801 0.612744 ACTTGCAAGGCCTCTCTCTC 59.387 55.000 29.18 0.00 0.00 3.20
468 803 1.003003 AGAACTTGCAAGGCCTCTCTC 59.997 52.381 29.18 13.35 0.00 3.20
469 804 1.063183 AGAACTTGCAAGGCCTCTCT 58.937 50.000 29.18 18.16 0.00 3.10
471 806 1.143684 TGAAGAACTTGCAAGGCCTCT 59.856 47.619 29.18 22.57 0.00 3.69
491 826 3.087031 CAGCATTGAACTGACCTGGATT 58.913 45.455 0.00 0.00 37.32 3.01
560 895 7.421530 TCAATGAAGAAAGAGTAAAAGACCG 57.578 36.000 0.00 0.00 0.00 4.79
564 899 9.468532 CCCTTTTCAATGAAGAAAGAGTAAAAG 57.531 33.333 8.53 0.00 38.60 2.27
566 901 8.760980 TCCCTTTTCAATGAAGAAAGAGTAAA 57.239 30.769 8.53 0.00 38.60 2.01
567 902 7.448469 CCTCCCTTTTCAATGAAGAAAGAGTAA 59.552 37.037 8.53 0.00 38.60 2.24
568 903 6.942576 CCTCCCTTTTCAATGAAGAAAGAGTA 59.057 38.462 8.53 0.00 38.60 2.59
569 904 5.772169 CCTCCCTTTTCAATGAAGAAAGAGT 59.228 40.000 8.53 0.00 38.60 3.24
570 905 5.184671 CCCTCCCTTTTCAATGAAGAAAGAG 59.815 44.000 8.53 8.06 38.60 2.85
571 906 5.079643 CCCTCCCTTTTCAATGAAGAAAGA 58.920 41.667 8.53 0.00 38.60 2.52
572 907 4.221482 CCCCTCCCTTTTCAATGAAGAAAG 59.779 45.833 0.00 0.00 38.60 2.62
578 913 1.766951 TCCCCCTCCCTTTTCAATGA 58.233 50.000 0.00 0.00 0.00 2.57
579 914 2.854736 ATCCCCCTCCCTTTTCAATG 57.145 50.000 0.00 0.00 0.00 2.82
584 919 0.417437 CCCAAATCCCCCTCCCTTTT 59.583 55.000 0.00 0.00 0.00 2.27
612 947 1.831389 AAACTACACAGCGCGCACTG 61.831 55.000 35.10 27.74 43.59 3.66
636 971 1.709147 GCAGCAATCCAATCGCGACT 61.709 55.000 12.93 0.00 0.00 4.18
637 972 1.297893 GCAGCAATCCAATCGCGAC 60.298 57.895 12.93 0.00 0.00 5.19
638 973 1.026182 AAGCAGCAATCCAATCGCGA 61.026 50.000 13.09 13.09 0.00 5.87
639 974 0.590732 GAAGCAGCAATCCAATCGCG 60.591 55.000 0.00 0.00 0.00 5.87
654 989 1.424493 CGCGTCAGGATTCAGGAAGC 61.424 60.000 0.00 5.19 33.59 3.86
663 998 3.785859 ACATGGCCGCGTCAGGAT 61.786 61.111 16.06 1.03 0.00 3.24
664 999 4.758251 CACATGGCCGCGTCAGGA 62.758 66.667 16.06 0.00 0.00 3.86
665 1000 4.758251 TCACATGGCCGCGTCAGG 62.758 66.667 4.92 7.61 0.00 3.86
666 1001 2.244436 CTTTCACATGGCCGCGTCAG 62.244 60.000 4.92 0.00 0.00 3.51
667 1002 2.281139 TTTCACATGGCCGCGTCA 60.281 55.556 4.92 3.20 0.00 4.35
668 1003 2.325082 ACTTTCACATGGCCGCGTC 61.325 57.895 4.92 0.00 0.00 5.19
669 1004 2.281484 ACTTTCACATGGCCGCGT 60.281 55.556 4.92 0.00 0.00 6.01
670 1005 2.176546 CACTTTCACATGGCCGCG 59.823 61.111 0.00 0.00 0.00 6.46
680 1015 0.178975 ATTGTTCCGCCCCACTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
710 1045 8.477984 TTTCAGAAACAAGAAACAATCTTTGG 57.522 30.769 0.00 0.00 46.39 3.28
717 1052 8.303156 TGTCAGATTTTCAGAAACAAGAAACAA 58.697 29.630 0.00 0.00 33.82 2.83
762 1097 8.366671 CTACTCCATAAAGTAGTGCCATAAAC 57.633 38.462 3.45 0.00 42.46 2.01
854 1193 5.642063 TCTGGCATAAGTAAACAGCTGTAAC 59.358 40.000 22.01 20.55 0.00 2.50
860 1199 8.777865 TCATATATCTGGCATAAGTAAACAGC 57.222 34.615 0.00 0.00 0.00 4.40
868 1207 7.855375 TCTTTCCCTCATATATCTGGCATAAG 58.145 38.462 0.00 0.00 0.00 1.73
875 1214 6.058553 TGGCATCTTTCCCTCATATATCTG 57.941 41.667 0.00 0.00 0.00 2.90
918 1257 2.862541 CTGGACCTGTGATTCAAACCA 58.137 47.619 0.00 0.00 0.00 3.67
977 1316 1.072505 TTGGTGGTTCTCGCCTTCC 59.927 57.895 0.00 0.00 46.01 3.46
1566 1905 4.652131 TGCGCATTGGACCGGGTT 62.652 61.111 5.66 0.00 0.00 4.11
1581 1920 3.078836 ATTGCCAGGCCCATGTGC 61.079 61.111 9.64 0.00 0.00 4.57
2169 2508 3.327464 TGAGAGAAACATCCACACCATCA 59.673 43.478 0.00 0.00 0.00 3.07
2200 2539 5.615544 CGTTTGAGCAGAACCTAATGAACAG 60.616 44.000 0.00 0.00 0.00 3.16
2245 2584 0.184933 CTGTCACAAACCTCCCCCAA 59.815 55.000 0.00 0.00 0.00 4.12
2310 2649 2.562738 GTTGGGGCTAGCTGAAACAAAT 59.437 45.455 15.72 0.00 0.00 2.32
2335 2674 3.244387 GGGGTCTCATCTCTTGATAAGGC 60.244 52.174 0.00 0.00 32.72 4.35
2359 2698 1.648504 GTTATGTGTACCTGCGGACC 58.351 55.000 0.00 0.00 0.00 4.46
2397 2740 9.782028 CACACAATATTTTTCGAATCAAAACTG 57.218 29.630 0.00 0.29 0.00 3.16
2418 2761 4.514816 CAGGTCAATTGATGTACACACACA 59.485 41.667 12.12 0.00 37.54 3.72
2419 2762 4.515191 ACAGGTCAATTGATGTACACACAC 59.485 41.667 12.12 0.00 37.54 3.82
2488 2831 4.276183 AGCTTCACATCATCAATGCTGATC 59.724 41.667 0.00 0.00 40.49 2.92
2554 2897 2.032722 GCGATCAGAGTCGAAGTCGTAT 60.033 50.000 0.00 0.00 44.06 3.06
2671 3023 5.781306 AGATTGCATATCCTCAGATGACTCT 59.219 40.000 0.00 0.00 33.67 3.24
2727 3079 1.069636 CAGCGGTTTCAGTCTCTTTGC 60.070 52.381 0.00 0.00 0.00 3.68
2937 3289 5.532933 CGACAACGATAATGATTATGCTCG 58.467 41.667 1.80 3.95 42.66 5.03
3166 3525 6.710295 ACAACACTTTATAAGCACATCACAGA 59.290 34.615 0.00 0.00 0.00 3.41
3235 3603 5.200368 CCAGAAATGTAAACTGGCAAACT 57.800 39.130 0.00 0.00 43.32 2.66
3249 3617 5.330455 TGTAGTAGCAGACTCCAGAAATG 57.670 43.478 0.00 0.00 39.81 2.32
3293 3661 4.976224 TGATGAAAAGATCAGTGGCATG 57.024 40.909 0.00 0.00 42.53 4.06
3299 3667 7.452880 TCGGAATTTTGATGAAAAGATCAGT 57.547 32.000 0.00 0.00 42.53 3.41
3339 3707 9.912634 CAGTTCCATGTATTTTTACAATCAACT 57.087 29.630 0.00 0.00 33.21 3.16
3340 3708 9.906660 TCAGTTCCATGTATTTTTACAATCAAC 57.093 29.630 0.00 0.00 33.21 3.18
3409 3777 4.550076 ACTTTTGCATCTAGCTGTCTCT 57.450 40.909 0.00 0.00 45.94 3.10
3492 3860 3.688049 TCATGATGGAGTAGAGGGTGA 57.312 47.619 0.00 0.00 0.00 4.02
3522 3890 1.304630 TTCGTCTCCGACCATCCCA 60.305 57.895 0.00 0.00 44.13 4.37
3555 3923 3.877508 GGTCATACAATGTACTGGGAAGC 59.122 47.826 0.00 0.00 0.00 3.86
3652 4020 3.499737 GACAGGCGGCCGACATTG 61.500 66.667 36.60 26.67 0.00 2.82
3678 4046 1.153706 GAGCATGTGCCAATGTGCC 60.154 57.895 0.57 0.00 43.38 5.01
3762 4147 2.113139 CAACCGTTGGTCTGCCCT 59.887 61.111 3.10 0.00 33.12 5.19
3843 4228 1.733041 ATCTGACGCGGACAACACG 60.733 57.895 12.47 0.00 0.00 4.49
3889 4274 4.144297 CCCATGTTCCCATACCAATACAG 58.856 47.826 0.00 0.00 0.00 2.74
3893 4278 3.642141 GAACCCATGTTCCCATACCAAT 58.358 45.455 0.00 0.00 44.20 3.16
3894 4279 2.619332 CGAACCCATGTTCCCATACCAA 60.619 50.000 0.00 0.00 46.67 3.67
3906 4291 0.243907 ACTGAGACGACGAACCCATG 59.756 55.000 0.00 0.00 0.00 3.66
3925 4310 1.210478 GAAGCTCCCTTACAGGCATGA 59.790 52.381 4.84 0.00 32.73 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.