Multiple sequence alignment - TraesCS6D01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G132500 chr6D 100.000 5128 0 0 1 5128 99788750 99793877 0.000000e+00 9470.0
1 TraesCS6D01G132500 chr6D 87.576 330 27 4 4813 5128 100349853 100350182 2.260000e-98 370.0
2 TraesCS6D01G132500 chr6D 82.254 355 29 13 3662 3992 100348735 100349079 5.060000e-70 276.0
3 TraesCS6D01G132500 chr6D 79.468 263 31 13 429 668 427346795 427346533 1.140000e-36 165.0
4 TraesCS6D01G132500 chr6D 97.222 36 0 1 4582 4616 100873818 100873853 5.540000e-05 60.2
5 TraesCS6D01G132500 chr6B 96.539 2427 59 8 1742 4164 184145689 184148094 0.000000e+00 3993.0
6 TraesCS6D01G132500 chr6B 92.071 845 31 16 863 1697 184144875 184145693 0.000000e+00 1157.0
7 TraesCS6D01G132500 chr6B 91.556 450 21 4 4663 5106 184148414 184148852 5.680000e-169 604.0
8 TraesCS6D01G132500 chr6B 85.253 434 45 6 1 431 184144231 184144648 3.670000e-116 429.0
9 TraesCS6D01G132500 chr6B 92.237 219 16 1 4365 4583 184148199 184148416 4.990000e-80 309.0
10 TraesCS6D01G132500 chr6B 90.500 200 16 2 666 863 184144646 184144844 1.420000e-65 261.0
11 TraesCS6D01G132500 chr6B 82.890 263 23 14 429 669 665636086 665636348 3.110000e-52 217.0
12 TraesCS6D01G132500 chr6A 94.454 1136 45 10 3171 4298 119752486 119753611 0.000000e+00 1733.0
13 TraesCS6D01G132500 chr6A 91.199 1034 49 15 695 1697 119749759 119750781 0.000000e+00 1367.0
14 TraesCS6D01G132500 chr6A 97.724 747 14 2 1742 2487 119750777 119751521 0.000000e+00 1282.0
15 TraesCS6D01G132500 chr6A 96.398 694 19 4 2486 3174 119751616 119752308 0.000000e+00 1138.0
16 TraesCS6D01G132500 chr6A 89.344 610 37 7 74 660 119749155 119749759 0.000000e+00 741.0
17 TraesCS6D01G132500 chr6A 95.064 466 20 2 4666 5128 119753961 119754426 0.000000e+00 730.0
18 TraesCS6D01G132500 chr6A 90.741 324 9 3 4301 4623 119753656 119753959 3.690000e-111 412.0
19 TraesCS6D01G132500 chr6A 80.755 265 27 14 429 670 410575774 410576037 8.770000e-43 185.0
20 TraesCS6D01G132500 chr6A 79.856 278 34 7 429 684 36403606 36403883 3.150000e-42 183.0
21 TraesCS6D01G132500 chr6A 88.636 88 9 1 4575 4661 66089145 66089058 7.020000e-19 106.0
22 TraesCS6D01G132500 chr6A 86.585 82 9 2 4582 4661 58312326 58312407 7.070000e-14 89.8
23 TraesCS6D01G132500 chr6A 100.000 37 0 0 4266 4302 20250073 20250109 9.210000e-08 69.4
24 TraesCS6D01G132500 chr6A 92.857 42 3 0 4261 4302 213755950 213755909 1.540000e-05 62.1
25 TraesCS6D01G132500 chr2D 82.979 235 38 2 429 663 505843665 505843433 1.450000e-50 211.0
26 TraesCS6D01G132500 chr2A 81.818 264 26 14 429 670 606519323 606519060 8.710000e-48 202.0
27 TraesCS6D01G132500 chr2A 90.000 80 7 1 4582 4660 679913004 679913083 9.080000e-18 102.0
28 TraesCS6D01G132500 chr1D 81.609 261 31 11 429 675 442328296 442328039 3.130000e-47 200.0
29 TraesCS6D01G132500 chr1D 79.699 266 29 11 429 671 473678166 473678429 8.830000e-38 169.0
30 TraesCS6D01G132500 chr1D 79.310 261 31 10 429 667 109512167 109511908 1.480000e-35 161.0
31 TraesCS6D01G132500 chr1D 79.130 230 40 7 1 225 441200994 441200768 8.890000e-33 152.0
32 TraesCS6D01G132500 chr1D 93.333 45 3 0 4258 4302 275947612 275947656 3.310000e-07 67.6
33 TraesCS6D01G132500 chr5D 81.509 265 27 12 429 671 279293131 279292867 1.130000e-46 198.0
34 TraesCS6D01G132500 chr5D 76.327 245 56 2 1 243 40767769 40768013 4.170000e-26 130.0
35 TraesCS6D01G132500 chr4A 81.154 260 31 11 429 671 589590629 589590887 5.240000e-45 193.0
36 TraesCS6D01G132500 chr4A 78.927 261 33 8 429 667 31579789 31579529 1.910000e-34 158.0
37 TraesCS6D01G132500 chr5B 80.608 263 26 12 429 668 251049641 251049381 4.080000e-41 180.0
38 TraesCS6D01G132500 chr5B 79.545 264 32 12 428 669 676907955 676907692 8.830000e-38 169.0
39 TraesCS6D01G132500 chr5B 95.238 42 2 0 4261 4302 330755865 330755906 3.310000e-07 67.6
40 TraesCS6D01G132500 chr5B 100.000 34 0 0 4269 4302 602247141 602247108 4.290000e-06 63.9
41 TraesCS6D01G132500 chr2B 84.916 179 20 7 429 606 796740700 796740872 1.900000e-39 174.0
42 TraesCS6D01G132500 chr2B 97.500 40 0 1 4264 4302 790112936 790112975 3.310000e-07 67.6
43 TraesCS6D01G132500 chr7A 91.270 126 10 1 550 674 91928201 91928076 2.460000e-38 171.0
44 TraesCS6D01G132500 chr1B 78.571 266 47 9 1 259 334247298 334247036 3.180000e-37 167.0
45 TraesCS6D01G132500 chr3D 79.654 231 43 4 11 239 11594962 11595190 4.110000e-36 163.0
46 TraesCS6D01G132500 chr3D 90.000 80 7 1 4582 4660 383596891 383596970 9.080000e-18 102.0
47 TraesCS6D01G132500 chr3D 88.889 54 4 2 4249 4301 15951576 15951524 1.190000e-06 65.8
48 TraesCS6D01G132500 chr7D 78.629 248 50 3 1 246 562433427 562433181 1.480000e-35 161.0
49 TraesCS6D01G132500 chr4D 78.367 245 49 4 1 243 473829780 473830022 6.870000e-34 156.0
50 TraesCS6D01G132500 chr3A 75.918 245 56 3 1 243 163893826 163894069 6.970000e-24 122.0
51 TraesCS6D01G132500 chr5A 88.506 87 6 3 4582 4665 101414477 101414562 9.080000e-18 102.0
52 TraesCS6D01G132500 chr3B 95.349 43 2 0 4623 4665 76432115 76432157 9.210000e-08 69.4
53 TraesCS6D01G132500 chr7B 97.436 39 1 0 4264 4302 126550046 126550008 3.310000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G132500 chr6D 99788750 99793877 5127 False 9470.000000 9470 100.000000 1 5128 1 chr6D.!!$F1 5127
1 TraesCS6D01G132500 chr6D 100348735 100350182 1447 False 323.000000 370 84.915000 3662 5128 2 chr6D.!!$F3 1466
2 TraesCS6D01G132500 chr6B 184144231 184148852 4621 False 1125.500000 3993 91.359333 1 5106 6 chr6B.!!$F2 5105
3 TraesCS6D01G132500 chr6A 119749155 119754426 5271 False 1057.571429 1733 93.560571 74 5128 7 chr6A.!!$F5 5054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 266 0.736053 GACACAGAAAACCCACGCAA 59.264 50.0 0.0 0.0 0.0 4.85 F
1177 1244 0.657840 CGCGGGAGGTGATCAAATTC 59.342 55.0 0.0 0.0 0.0 2.17 F
1178 1245 0.657840 GCGGGAGGTGATCAAATTCG 59.342 55.0 0.0 0.0 0.0 3.34 F
1595 1663 0.830444 TCGGTGAACTAGCTGTGGGT 60.830 55.0 0.0 0.0 0.0 4.51 F
3202 3561 0.821301 GCCTAGCTTGCCTCCAATCC 60.821 60.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1276 0.319900 AGACGCGATTCTTGTGCACT 60.320 50.000 19.41 0.0 0.0 4.40 R
2863 3041 2.287608 GCAAGTTATTCCAATAGCGCCC 60.288 50.000 2.29 0.0 0.0 6.13 R
3141 3319 6.406370 TGTGAAATATGAAGAGTTGGTCGAT 58.594 36.000 0.00 0.0 0.0 3.59 R
3542 3904 1.578926 CGCAATTGGAGTTCGGCAA 59.421 52.632 7.72 0.0 0.0 4.52 R
4651 5338 0.178929 ATCAGATACCCCCTCCGTCC 60.179 60.000 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.308458 TCCACACGCCCTCCAACG 62.308 66.667 0.00 0.00 0.00 4.10
42 43 4.657824 CACGCCCTCCAACGACGT 62.658 66.667 0.00 0.00 37.47 4.34
54 55 1.280206 AACGACGTTAGAAGCACCGC 61.280 55.000 12.39 0.00 0.00 5.68
60 61 0.790814 GTTAGAAGCACCGCTGTGAC 59.209 55.000 12.93 3.67 45.76 3.67
62 63 1.520600 TAGAAGCACCGCTGTGACGA 61.521 55.000 12.93 0.00 45.76 4.20
64 65 3.865929 AAGCACCGCTGTGACGAGG 62.866 63.158 12.93 0.00 45.76 4.63
146 148 6.649155 AGCAAGAAACAAACCCTAACAAAAT 58.351 32.000 0.00 0.00 0.00 1.82
151 153 7.616313 AGAAACAAACCCTAACAAAATTCACA 58.384 30.769 0.00 0.00 0.00 3.58
178 180 4.705023 ACATCCAAAAATAAAGTCCTCCGG 59.295 41.667 0.00 0.00 0.00 5.14
243 245 0.809241 CAAGAGATGAGGCAGACCGC 60.809 60.000 0.00 0.00 42.76 5.68
252 254 4.357947 GCAGACCGCCGACACAGA 62.358 66.667 0.00 0.00 32.94 3.41
264 266 0.736053 GACACAGAAAACCCACGCAA 59.264 50.000 0.00 0.00 0.00 4.85
434 437 2.409570 AGCCCTTGGTATCTTACTCCC 58.590 52.381 0.00 0.00 0.00 4.30
436 439 2.778270 GCCCTTGGTATCTTACTCCCTT 59.222 50.000 0.00 0.00 0.00 3.95
452 455 8.552083 TTACTCCCTTCGTTTTTATTTACTCC 57.448 34.615 0.00 0.00 0.00 3.85
566 591 9.643693 ATGAAGTGAAATGGTATTGATTTGTTC 57.356 29.630 0.00 0.00 0.00 3.18
641 666 5.636837 TGACTTTGAATAAAGCCAATACGC 58.363 37.500 0.00 0.00 45.72 4.42
643 668 3.684103 TTGAATAAAGCCAATACGCGG 57.316 42.857 12.47 0.00 0.00 6.46
659 684 7.911205 CCAATACGCGGACTAAATAAAAATGAA 59.089 33.333 12.47 0.00 0.00 2.57
660 685 8.943925 CAATACGCGGACTAAATAAAAATGAAG 58.056 33.333 12.47 0.00 0.00 3.02
661 686 5.875930 ACGCGGACTAAATAAAAATGAAGG 58.124 37.500 12.47 0.00 0.00 3.46
662 687 5.163693 ACGCGGACTAAATAAAAATGAAGGG 60.164 40.000 12.47 0.00 0.00 3.95
663 688 5.065474 CGCGGACTAAATAAAAATGAAGGGA 59.935 40.000 0.00 0.00 0.00 4.20
664 689 6.495706 GCGGACTAAATAAAAATGAAGGGAG 58.504 40.000 0.00 0.00 0.00 4.30
689 714 9.525409 AGTACATAATTTGAGTATAACGTGGAC 57.475 33.333 0.00 0.00 0.00 4.02
690 715 7.781548 ACATAATTTGAGTATAACGTGGACC 57.218 36.000 0.00 0.00 0.00 4.46
691 716 6.764560 ACATAATTTGAGTATAACGTGGACCC 59.235 38.462 0.00 0.00 0.00 4.46
718 743 1.141053 ACTCCCTTCGTCCCATAATGC 59.859 52.381 0.00 0.00 0.00 3.56
723 748 2.097466 CCTTCGTCCCATAATGCAACAC 59.903 50.000 0.00 0.00 0.00 3.32
724 749 2.481289 TCGTCCCATAATGCAACACA 57.519 45.000 0.00 0.00 0.00 3.72
944 1010 2.988570 CAGAATTCTGCTCTGCTCCTT 58.011 47.619 21.96 0.00 37.15 3.36
945 1011 2.937799 CAGAATTCTGCTCTGCTCCTTC 59.062 50.000 21.96 0.00 37.15 3.46
946 1012 2.093021 AGAATTCTGCTCTGCTCCTTCC 60.093 50.000 7.30 0.00 0.00 3.46
947 1013 1.582389 ATTCTGCTCTGCTCCTTCCT 58.418 50.000 0.00 0.00 0.00 3.36
948 1014 0.901124 TTCTGCTCTGCTCCTTCCTC 59.099 55.000 0.00 0.00 0.00 3.71
949 1015 1.141449 CTGCTCTGCTCCTTCCTCG 59.859 63.158 0.00 0.00 0.00 4.63
950 1016 1.304464 TGCTCTGCTCCTTCCTCGA 60.304 57.895 0.00 0.00 0.00 4.04
994 1061 3.997400 CTCGCCCGACCCTCTCTCA 62.997 68.421 0.00 0.00 0.00 3.27
1176 1243 1.376609 GCGCGGGAGGTGATCAAATT 61.377 55.000 8.83 0.00 0.00 1.82
1177 1244 0.657840 CGCGGGAGGTGATCAAATTC 59.342 55.000 0.00 0.00 0.00 2.17
1178 1245 0.657840 GCGGGAGGTGATCAAATTCG 59.342 55.000 0.00 0.00 0.00 3.34
1180 1247 2.627945 CGGGAGGTGATCAAATTCGAA 58.372 47.619 0.00 0.00 0.00 3.71
1181 1248 2.351726 CGGGAGGTGATCAAATTCGAAC 59.648 50.000 0.00 0.00 0.00 3.95
1184 1251 3.610911 GAGGTGATCAAATTCGAACCCT 58.389 45.455 0.00 0.00 0.00 4.34
1209 1276 2.030185 GTCACAGAGTCTCGGTTGCTTA 60.030 50.000 2.55 0.00 0.00 3.09
1213 1280 1.067495 AGAGTCTCGGTTGCTTAGTGC 60.067 52.381 0.00 0.00 43.25 4.40
1296 1363 2.669391 CGCCTGCAAGATCCTGTTTTTC 60.669 50.000 0.00 0.00 34.07 2.29
1297 1364 2.560105 GCCTGCAAGATCCTGTTTTTCT 59.440 45.455 0.00 0.00 34.07 2.52
1299 1366 4.553323 CCTGCAAGATCCTGTTTTTCTTG 58.447 43.478 7.38 7.38 45.80 3.02
1302 1369 5.976458 TGCAAGATCCTGTTTTTCTTGTTT 58.024 33.333 12.05 0.00 45.16 2.83
1311 1378 5.828328 CCTGTTTTTCTTGTTTCCTAGGAGT 59.172 40.000 12.26 0.00 0.00 3.85
1315 1382 3.955650 TCTTGTTTCCTAGGAGTTCCG 57.044 47.619 12.26 2.54 42.08 4.30
1317 1384 2.019807 TGTTTCCTAGGAGTTCCGGT 57.980 50.000 12.26 0.00 42.08 5.28
1322 1389 1.904537 TCCTAGGAGTTCCGGTTTTCC 59.095 52.381 7.62 7.06 42.08 3.13
1345 1412 3.374402 CGGCTCTGACTGACCCGT 61.374 66.667 7.69 0.00 38.68 5.28
1490 1558 7.490962 TGACCTTAATCGTGCTAAATAATGG 57.509 36.000 0.00 0.00 0.00 3.16
1540 1608 6.208797 ACCTATACATGTTAGCAGCTCGATTA 59.791 38.462 2.30 0.00 0.00 1.75
1544 1612 2.384828 TGTTAGCAGCTCGATTAGGGA 58.615 47.619 0.00 0.00 0.00 4.20
1549 1617 2.636893 AGCAGCTCGATTAGGGATCAAT 59.363 45.455 0.00 0.00 34.23 2.57
1595 1663 0.830444 TCGGTGAACTAGCTGTGGGT 60.830 55.000 0.00 0.00 0.00 4.51
1629 1697 5.183014 TGTATACAGAGATTGGTGTAGCG 57.817 43.478 0.08 0.00 32.76 4.26
1668 1744 9.226345 CTTGTTTTGTCTTAGTGAATTCAGAAC 57.774 33.333 8.80 3.81 0.00 3.01
1697 1773 3.960102 TGGTGGAAATTTGAGTTGCTTCT 59.040 39.130 0.00 0.00 0.00 2.85
1698 1774 4.202141 TGGTGGAAATTTGAGTTGCTTCTG 60.202 41.667 0.00 0.00 0.00 3.02
1699 1775 4.037923 GGTGGAAATTTGAGTTGCTTCTGA 59.962 41.667 0.00 0.00 0.00 3.27
1700 1776 5.279156 GGTGGAAATTTGAGTTGCTTCTGAT 60.279 40.000 0.00 0.00 0.00 2.90
1701 1777 6.071952 GGTGGAAATTTGAGTTGCTTCTGATA 60.072 38.462 0.00 0.00 0.00 2.15
1702 1778 7.025963 GTGGAAATTTGAGTTGCTTCTGATAG 58.974 38.462 0.00 0.00 0.00 2.08
1703 1779 6.942005 TGGAAATTTGAGTTGCTTCTGATAGA 59.058 34.615 0.00 0.00 0.00 1.98
1704 1780 7.094634 TGGAAATTTGAGTTGCTTCTGATAGAC 60.095 37.037 0.00 0.00 0.00 2.59
1705 1781 6.749923 AATTTGAGTTGCTTCTGATAGACC 57.250 37.500 0.00 0.00 0.00 3.85
1706 1782 3.510388 TGAGTTGCTTCTGATAGACCG 57.490 47.619 0.00 0.00 0.00 4.79
1707 1783 3.089284 TGAGTTGCTTCTGATAGACCGA 58.911 45.455 0.00 0.00 0.00 4.69
1708 1784 3.509967 TGAGTTGCTTCTGATAGACCGAA 59.490 43.478 0.00 0.00 0.00 4.30
1709 1785 4.160439 TGAGTTGCTTCTGATAGACCGAAT 59.840 41.667 0.00 0.00 0.00 3.34
1710 1786 4.437239 AGTTGCTTCTGATAGACCGAATG 58.563 43.478 0.00 0.00 0.00 2.67
1711 1787 4.160439 AGTTGCTTCTGATAGACCGAATGA 59.840 41.667 0.00 0.00 0.00 2.57
1712 1788 4.944619 TGCTTCTGATAGACCGAATGAT 57.055 40.909 0.00 0.00 0.00 2.45
1713 1789 4.876125 TGCTTCTGATAGACCGAATGATC 58.124 43.478 0.00 0.00 0.00 2.92
1714 1790 4.586421 TGCTTCTGATAGACCGAATGATCT 59.414 41.667 0.00 0.00 0.00 2.75
1715 1791 4.922692 GCTTCTGATAGACCGAATGATCTG 59.077 45.833 0.00 0.00 0.00 2.90
1716 1792 5.459536 TTCTGATAGACCGAATGATCTGG 57.540 43.478 0.00 0.00 0.00 3.86
1717 1793 3.256879 TCTGATAGACCGAATGATCTGGC 59.743 47.826 0.00 0.00 0.00 4.85
1718 1794 2.300152 TGATAGACCGAATGATCTGGCC 59.700 50.000 0.00 0.00 0.00 5.36
1719 1795 2.088104 TAGACCGAATGATCTGGCCT 57.912 50.000 3.32 0.00 0.00 5.19
1720 1796 2.088104 AGACCGAATGATCTGGCCTA 57.912 50.000 3.32 0.00 0.00 3.93
1721 1797 2.398588 AGACCGAATGATCTGGCCTAA 58.601 47.619 3.32 0.00 0.00 2.69
1722 1798 2.103263 AGACCGAATGATCTGGCCTAAC 59.897 50.000 3.32 0.00 0.00 2.34
1723 1799 1.141053 ACCGAATGATCTGGCCTAACC 59.859 52.381 3.32 0.00 39.84 2.85
1734 1810 2.808906 GGCCTAACCAATCTCAAGGT 57.191 50.000 0.00 0.00 40.61 3.50
1735 1811 2.644676 GGCCTAACCAATCTCAAGGTC 58.355 52.381 0.00 0.00 37.07 3.85
1736 1812 2.239907 GGCCTAACCAATCTCAAGGTCT 59.760 50.000 0.00 0.00 37.07 3.85
1737 1813 3.454812 GGCCTAACCAATCTCAAGGTCTA 59.545 47.826 0.00 0.00 37.07 2.59
1738 1814 4.103311 GGCCTAACCAATCTCAAGGTCTAT 59.897 45.833 0.00 0.00 37.07 1.98
1739 1815 5.301555 GCCTAACCAATCTCAAGGTCTATC 58.698 45.833 0.00 0.00 37.07 2.08
1740 1816 5.163301 GCCTAACCAATCTCAAGGTCTATCA 60.163 44.000 0.00 0.00 37.07 2.15
1741 1817 6.520272 CCTAACCAATCTCAAGGTCTATCAG 58.480 44.000 0.00 0.00 37.07 2.90
1742 1818 4.414337 ACCAATCTCAAGGTCTATCAGC 57.586 45.455 0.00 0.00 30.79 4.26
1743 1819 4.036518 ACCAATCTCAAGGTCTATCAGCT 58.963 43.478 0.00 0.00 30.79 4.24
1744 1820 4.472833 ACCAATCTCAAGGTCTATCAGCTT 59.527 41.667 0.00 0.00 44.02 3.74
1745 1821 5.055812 CCAATCTCAAGGTCTATCAGCTTC 58.944 45.833 0.00 0.00 41.09 3.86
1746 1822 5.163322 CCAATCTCAAGGTCTATCAGCTTCT 60.163 44.000 0.00 0.00 41.09 2.85
1818 1895 5.118664 TGTCGAATTCTAGCTGTCTTTTTCG 59.881 40.000 3.52 4.35 36.86 3.46
2586 2763 6.664428 ATATTTAAAACCCATCCAATCCCG 57.336 37.500 0.00 0.00 0.00 5.14
2913 3091 7.062322 AGCAATGATGATAAAATGGTAGGTCA 58.938 34.615 0.00 0.00 0.00 4.02
2955 3133 8.260818 TGCTAGCAGAGTAAAAATCTTAGATGT 58.739 33.333 14.93 0.00 0.00 3.06
3141 3319 4.321156 GCAGTTGTGTCCAATTCTGCATTA 60.321 41.667 9.56 0.00 44.22 1.90
3202 3561 0.821301 GCCTAGCTTGCCTCCAATCC 60.821 60.000 0.00 0.00 0.00 3.01
3542 3904 8.641498 AATTCTTGTCTGTTCTTGATGGTAAT 57.359 30.769 0.00 0.00 0.00 1.89
3638 4000 5.265191 TCACCAGATGGCTCTATAGGTATC 58.735 45.833 0.00 0.05 39.32 2.24
3639 4001 5.019470 CACCAGATGGCTCTATAGGTATCA 58.981 45.833 0.00 0.00 39.32 2.15
3861 4245 4.427312 CTTGCAATAGAAAATCTGCCACC 58.573 43.478 0.00 0.00 33.78 4.61
3900 4285 8.527810 TGATTTTATTTTTCTTACCATCGCCTT 58.472 29.630 0.00 0.00 0.00 4.35
3944 4329 7.658261 TGTACTACATATTGAGCTGTACCATC 58.342 38.462 0.00 0.00 0.00 3.51
4127 4512 6.017440 TGTTTCAAGAAATAACCGGTTCTGAG 60.017 38.462 26.16 11.29 34.33 3.35
4188 4574 7.831691 TCATTTTTGAATAGTTTCCAGGACA 57.168 32.000 0.00 0.00 0.00 4.02
4200 4586 5.664908 AGTTTCCAGGACATCTCTCATGTAT 59.335 40.000 0.00 0.00 31.52 2.29
4230 4616 3.517602 CACGCTTGTGCTACCTAATACA 58.482 45.455 0.00 0.00 36.68 2.29
4276 4893 7.558604 AGTACGATCATATCTACTACTCCCTC 58.441 42.308 0.00 0.00 0.00 4.30
4298 4915 9.490379 CCCTCTGTAAATAAATATAAGAGCGTT 57.510 33.333 0.00 0.00 0.00 4.84
4317 4976 5.048294 AGCGTTTAGTACCTTGGAAAAATGG 60.048 40.000 0.00 0.00 0.00 3.16
4453 5139 3.622060 TTAGGTTGGGAGCAGCGGC 62.622 63.158 0.00 0.00 41.61 6.53
4593 5280 2.509166 TCACATGTACTCCCTCGTCT 57.491 50.000 0.00 0.00 0.00 4.18
4606 5293 6.071984 ACTCCCTCGTCTCATAATGTAAGAT 58.928 40.000 0.00 0.00 0.00 2.40
4658 5345 9.765795 AAAAAGATCTTACATTATAGGACGGAG 57.234 33.333 8.75 0.00 0.00 4.63
4659 5346 7.469537 AAGATCTTACATTATAGGACGGAGG 57.530 40.000 6.06 0.00 0.00 4.30
4660 5347 5.952947 AGATCTTACATTATAGGACGGAGGG 59.047 44.000 0.00 0.00 0.00 4.30
4661 5348 4.413760 TCTTACATTATAGGACGGAGGGG 58.586 47.826 0.00 0.00 0.00 4.79
4662 5349 2.025636 ACATTATAGGACGGAGGGGG 57.974 55.000 0.00 0.00 0.00 5.40
4663 5350 1.222298 ACATTATAGGACGGAGGGGGT 59.778 52.381 0.00 0.00 0.00 4.95
4664 5351 2.452047 ACATTATAGGACGGAGGGGGTA 59.548 50.000 0.00 0.00 0.00 3.69
4984 5714 0.674895 ATCTGCACGAACAGGAAGCC 60.675 55.000 9.07 0.00 38.26 4.35
5045 5779 6.216801 TCAGTAGATACCACATGTTACCAC 57.783 41.667 0.00 0.00 0.00 4.16
5093 5827 6.653989 AGGAATATCGACCAAACAAAGAGAT 58.346 36.000 0.00 0.00 0.00 2.75
5117 5851 4.460263 TCATGTTGGTCAACTGTAAGCTT 58.540 39.130 13.96 3.48 41.67 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.666577 ACAGCGGTGCTTCTAACGTC 60.667 55.000 15.82 0.00 36.40 4.34
42 43 0.666274 CGTCACAGCGGTGCTTCTAA 60.666 55.000 15.82 0.00 44.87 2.10
54 55 2.496817 GCCTAGGCCTCGTCACAG 59.503 66.667 24.19 0.00 34.56 3.66
60 61 3.881019 TATCCCCGCCTAGGCCTCG 62.881 68.421 28.09 14.01 39.21 4.63
62 63 1.842010 GTTATCCCCGCCTAGGCCT 60.842 63.158 28.09 11.78 39.21 5.19
64 65 1.416480 AAGGTTATCCCCGCCTAGGC 61.416 60.000 24.75 24.75 39.21 3.93
65 66 0.396811 CAAGGTTATCCCCGCCTAGG 59.603 60.000 3.67 3.67 40.63 3.02
151 153 7.655732 CGGAGGACTTTATTTTTGGATGTTTTT 59.344 33.333 0.00 0.00 0.00 1.94
178 180 1.446366 GATCCCGACCCTTACTGGC 59.554 63.158 0.00 0.00 0.00 4.85
191 193 4.176752 GGAGGCACGGTGGATCCC 62.177 72.222 9.90 2.27 0.00 3.85
213 215 4.500716 GCCTCATCTCTTGTAGTCTTAGGC 60.501 50.000 0.00 0.00 39.03 3.93
243 245 1.938861 CGTGGGTTTTCTGTGTCGG 59.061 57.895 0.00 0.00 0.00 4.79
418 421 5.340439 AACGAAGGGAGTAAGATACCAAG 57.660 43.478 0.00 0.00 0.00 3.61
419 422 5.750352 AAACGAAGGGAGTAAGATACCAA 57.250 39.130 0.00 0.00 0.00 3.67
420 423 5.750352 AAAACGAAGGGAGTAAGATACCA 57.250 39.130 0.00 0.00 0.00 3.25
421 424 8.728337 AATAAAAACGAAGGGAGTAAGATACC 57.272 34.615 0.00 0.00 0.00 2.73
436 439 9.531942 TCTAATATGCGGAGTAAATAAAAACGA 57.468 29.630 0.00 0.00 0.00 3.85
544 547 8.641541 ACAAGAACAAATCAATACCATTTCACT 58.358 29.630 0.00 0.00 0.00 3.41
625 650 2.870411 AGTCCGCGTATTGGCTTTATTC 59.130 45.455 4.92 0.00 0.00 1.75
634 659 8.829514 TTCATTTTTATTTAGTCCGCGTATTG 57.170 30.769 4.92 0.00 0.00 1.90
641 666 7.625828 ACTCCCTTCATTTTTATTTAGTCCG 57.374 36.000 0.00 0.00 0.00 4.79
659 684 8.921205 ACGTTATACTCAAATTATGTACTCCCT 58.079 33.333 0.00 0.00 0.00 4.20
660 685 8.975439 CACGTTATACTCAAATTATGTACTCCC 58.025 37.037 0.00 0.00 0.00 4.30
661 686 8.975439 CCACGTTATACTCAAATTATGTACTCC 58.025 37.037 0.00 0.00 0.00 3.85
662 687 9.740239 TCCACGTTATACTCAAATTATGTACTC 57.260 33.333 0.00 0.00 0.00 2.59
663 688 9.525409 GTCCACGTTATACTCAAATTATGTACT 57.475 33.333 0.00 0.00 0.00 2.73
664 689 8.758715 GGTCCACGTTATACTCAAATTATGTAC 58.241 37.037 0.00 0.00 0.00 2.90
689 714 1.962100 GACGAAGGGAGTAGGTATGGG 59.038 57.143 0.00 0.00 0.00 4.00
690 715 1.962100 GGACGAAGGGAGTAGGTATGG 59.038 57.143 0.00 0.00 0.00 2.74
691 716 1.962100 GGGACGAAGGGAGTAGGTATG 59.038 57.143 0.00 0.00 0.00 2.39
718 743 9.726232 CTCCATCTCATAATGTAAAATGTGTTG 57.274 33.333 0.00 0.00 0.00 3.33
776 801 4.634443 GCGGTTTATTCAGCTCTTTTCCTA 59.366 41.667 0.00 0.00 0.00 2.94
891 952 2.746359 GGCGGAGGGATGGATGAG 59.254 66.667 0.00 0.00 0.00 2.90
944 1010 4.075793 CAGGGGGAGGGTCGAGGA 62.076 72.222 0.00 0.00 0.00 3.71
947 1013 4.414956 ATGCAGGGGGAGGGTCGA 62.415 66.667 0.00 0.00 0.00 4.20
948 1014 3.866582 GATGCAGGGGGAGGGTCG 61.867 72.222 0.00 0.00 0.00 4.79
949 1015 2.367512 AGATGCAGGGGGAGGGTC 60.368 66.667 0.00 0.00 0.00 4.46
950 1016 2.367512 GAGATGCAGGGGGAGGGT 60.368 66.667 0.00 0.00 0.00 4.34
1178 1245 2.036089 AGACTCTGTGACGAAAGGGTTC 59.964 50.000 0.00 0.00 0.00 3.62
1180 1247 1.614413 GAGACTCTGTGACGAAAGGGT 59.386 52.381 0.00 0.00 0.00 4.34
1181 1248 1.401670 CGAGACTCTGTGACGAAAGGG 60.402 57.143 0.03 0.00 0.00 3.95
1184 1251 1.315690 ACCGAGACTCTGTGACGAAA 58.684 50.000 0.00 0.00 0.00 3.46
1209 1276 0.319900 AGACGCGATTCTTGTGCACT 60.320 50.000 19.41 0.00 0.00 4.40
1213 1280 0.994995 CCAGAGACGCGATTCTTGTG 59.005 55.000 15.93 8.00 0.00 3.33
1296 1363 2.302157 ACCGGAACTCCTAGGAAACAAG 59.698 50.000 13.77 2.97 0.00 3.16
1297 1364 2.332117 ACCGGAACTCCTAGGAAACAA 58.668 47.619 13.77 0.00 0.00 2.83
1299 1366 3.413846 AAACCGGAACTCCTAGGAAAC 57.586 47.619 13.77 6.93 0.00 2.78
1302 1369 1.904537 GGAAAACCGGAACTCCTAGGA 59.095 52.381 9.46 11.98 0.00 2.94
1311 1378 0.958382 CCGCATCTGGAAAACCGGAA 60.958 55.000 9.46 0.00 38.04 4.30
1315 1382 0.678048 AGAGCCGCATCTGGAAAACC 60.678 55.000 0.00 0.00 0.00 3.27
1317 1384 0.324614 TCAGAGCCGCATCTGGAAAA 59.675 50.000 15.48 0.07 45.60 2.29
1322 1389 0.805322 GTCAGTCAGAGCCGCATCTG 60.805 60.000 11.48 11.48 46.70 2.90
1345 1412 1.202710 TCTGGCACCTAGAAACGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
1490 1558 4.390264 AGTTTAGCTGACTGGAAAAGGTC 58.610 43.478 0.00 0.00 0.00 3.85
1507 1575 6.645306 TGCTAACATGTATAGGTGCAGTTTA 58.355 36.000 0.00 0.00 0.00 2.01
1540 1608 4.080919 TGAAACATCTCACGATTGATCCCT 60.081 41.667 0.00 0.00 0.00 4.20
1544 1612 5.970592 TCTCTGAAACATCTCACGATTGAT 58.029 37.500 0.00 0.00 0.00 2.57
1549 1617 7.872993 ACTAAAAATCTCTGAAACATCTCACGA 59.127 33.333 0.00 0.00 0.00 4.35
1590 1658 1.314730 ACATCCACGTGAAAACCCAC 58.685 50.000 19.30 0.00 0.00 4.61
1595 1663 6.275494 TCTCTGTATACATCCACGTGAAAA 57.725 37.500 19.30 2.00 0.00 2.29
1629 1697 2.022764 AAACAAGCAAGTGGCCAAAC 57.977 45.000 7.24 0.00 46.50 2.93
1668 1744 5.458041 ACTCAAATTTCCACCAAGTCATG 57.542 39.130 0.00 0.00 0.00 3.07
1697 1773 2.300152 GGCCAGATCATTCGGTCTATCA 59.700 50.000 0.00 0.00 0.00 2.15
1698 1774 2.564947 AGGCCAGATCATTCGGTCTATC 59.435 50.000 5.01 0.00 31.60 2.08
1699 1775 2.614259 AGGCCAGATCATTCGGTCTAT 58.386 47.619 5.01 0.00 31.60 1.98
1700 1776 2.088104 AGGCCAGATCATTCGGTCTA 57.912 50.000 5.01 0.00 31.60 2.59
1701 1777 2.088104 TAGGCCAGATCATTCGGTCT 57.912 50.000 5.01 0.00 35.58 3.85
1702 1778 2.484889 GTTAGGCCAGATCATTCGGTC 58.515 52.381 5.01 0.00 0.00 4.79
1703 1779 1.141053 GGTTAGGCCAGATCATTCGGT 59.859 52.381 5.01 0.00 37.17 4.69
1704 1780 1.140852 TGGTTAGGCCAGATCATTCGG 59.859 52.381 5.01 0.00 43.61 4.30
1705 1781 2.620251 TGGTTAGGCCAGATCATTCG 57.380 50.000 5.01 0.00 43.61 3.34
1715 1791 2.239907 AGACCTTGAGATTGGTTAGGCC 59.760 50.000 0.00 0.00 36.59 5.19
1716 1792 3.636153 AGACCTTGAGATTGGTTAGGC 57.364 47.619 0.00 0.00 36.59 3.93
1717 1793 6.485830 TGATAGACCTTGAGATTGGTTAGG 57.514 41.667 0.00 0.00 36.59 2.69
1718 1794 5.988561 GCTGATAGACCTTGAGATTGGTTAG 59.011 44.000 0.00 0.00 36.59 2.34
1719 1795 5.663106 AGCTGATAGACCTTGAGATTGGTTA 59.337 40.000 0.00 0.00 36.59 2.85
1720 1796 4.472833 AGCTGATAGACCTTGAGATTGGTT 59.527 41.667 0.00 0.00 36.59 3.67
1721 1797 4.036518 AGCTGATAGACCTTGAGATTGGT 58.963 43.478 0.00 0.00 39.60 3.67
1722 1798 4.686191 AGCTGATAGACCTTGAGATTGG 57.314 45.455 0.00 0.00 0.00 3.16
1723 1799 5.754406 CAGAAGCTGATAGACCTTGAGATTG 59.246 44.000 0.00 0.00 32.44 2.67
1724 1800 5.684552 GCAGAAGCTGATAGACCTTGAGATT 60.685 44.000 0.00 0.00 37.91 2.40
1725 1801 4.202243 GCAGAAGCTGATAGACCTTGAGAT 60.202 45.833 0.00 0.00 37.91 2.75
1726 1802 3.131933 GCAGAAGCTGATAGACCTTGAGA 59.868 47.826 0.00 0.00 37.91 3.27
1727 1803 3.456280 GCAGAAGCTGATAGACCTTGAG 58.544 50.000 0.00 0.00 37.91 3.02
1728 1804 2.169352 GGCAGAAGCTGATAGACCTTGA 59.831 50.000 0.00 0.00 41.70 3.02
1729 1805 2.170187 AGGCAGAAGCTGATAGACCTTG 59.830 50.000 0.00 0.00 41.70 3.61
1730 1806 2.476199 AGGCAGAAGCTGATAGACCTT 58.524 47.619 0.00 0.00 41.70 3.50
1731 1807 2.173126 AGGCAGAAGCTGATAGACCT 57.827 50.000 0.00 0.00 41.70 3.85
1732 1808 2.169352 TGAAGGCAGAAGCTGATAGACC 59.831 50.000 0.00 0.00 41.70 3.85
1733 1809 3.533606 TGAAGGCAGAAGCTGATAGAC 57.466 47.619 0.00 0.00 41.70 2.59
1734 1810 4.767578 AATGAAGGCAGAAGCTGATAGA 57.232 40.909 0.00 0.00 41.70 1.98
1735 1811 5.831702 AAAATGAAGGCAGAAGCTGATAG 57.168 39.130 0.00 0.00 41.70 2.08
1736 1812 6.319658 CCTAAAAATGAAGGCAGAAGCTGATA 59.680 38.462 0.00 0.00 41.70 2.15
1737 1813 5.126707 CCTAAAAATGAAGGCAGAAGCTGAT 59.873 40.000 0.00 0.00 41.70 2.90
1738 1814 4.460382 CCTAAAAATGAAGGCAGAAGCTGA 59.540 41.667 0.00 0.00 41.70 4.26
1739 1815 4.381292 CCCTAAAAATGAAGGCAGAAGCTG 60.381 45.833 0.00 0.00 41.70 4.24
1740 1816 3.766051 CCCTAAAAATGAAGGCAGAAGCT 59.234 43.478 0.00 0.00 41.70 3.74
1741 1817 3.511540 ACCCTAAAAATGAAGGCAGAAGC 59.488 43.478 0.00 0.00 41.10 3.86
1742 1818 4.082026 CCACCCTAAAAATGAAGGCAGAAG 60.082 45.833 0.00 0.00 0.00 2.85
1743 1819 3.831911 CCACCCTAAAAATGAAGGCAGAA 59.168 43.478 0.00 0.00 0.00 3.02
1744 1820 3.430453 CCACCCTAAAAATGAAGGCAGA 58.570 45.455 0.00 0.00 0.00 4.26
1745 1821 2.497273 CCCACCCTAAAAATGAAGGCAG 59.503 50.000 0.00 0.00 0.00 4.85
1746 1822 2.110899 TCCCACCCTAAAAATGAAGGCA 59.889 45.455 0.00 0.00 0.00 4.75
1818 1895 8.728088 AATAAAAACACATCGAACTGAACATC 57.272 30.769 0.00 0.00 0.00 3.06
1857 1934 5.950577 GCATGTGCAAGCAAGATACTTTGC 61.951 45.833 0.00 2.68 45.76 3.68
2561 2734 7.256012 GCGGGATTGGATGGGTTTTAAATATTA 60.256 37.037 0.00 0.00 0.00 0.98
2653 2830 5.626116 GCCCTAAATTAACCGAGAAGAGTCA 60.626 44.000 0.00 0.00 0.00 3.41
2758 2936 2.418280 TGCCAACAATGTAGCATGTACG 59.582 45.455 6.88 0.00 0.00 3.67
2863 3041 2.287608 GCAAGTTATTCCAATAGCGCCC 60.288 50.000 2.29 0.00 0.00 6.13
2913 3091 7.278135 TCTGCTAGCAGATTGAAACATTAGAT 58.722 34.615 37.64 0.00 46.80 1.98
3141 3319 6.406370 TGTGAAATATGAAGAGTTGGTCGAT 58.594 36.000 0.00 0.00 0.00 3.59
3262 3624 5.690464 ATGTTCTAACTCCATGCTCTCTT 57.310 39.130 0.00 0.00 0.00 2.85
3542 3904 1.578926 CGCAATTGGAGTTCGGCAA 59.421 52.632 7.72 0.00 0.00 4.52
3654 4016 7.497595 TGGCTAGTTCGTATCATATGTTCTTT 58.502 34.615 1.90 0.00 0.00 2.52
3896 4281 8.494016 ACAAACTTCTATCATAACTACAAGGC 57.506 34.615 0.00 0.00 0.00 4.35
4176 4562 3.843027 ACATGAGAGATGTCCTGGAAACT 59.157 43.478 0.00 0.00 0.00 2.66
4188 4574 6.625362 CGTGGTAGCATAATACATGAGAGAT 58.375 40.000 0.00 0.00 0.00 2.75
4200 4586 1.083489 GCACAAGCGTGGTAGCATAA 58.917 50.000 4.26 0.00 43.81 1.90
4294 4911 5.158494 CCATTTTTCCAAGGTACTAAACGC 58.842 41.667 0.00 0.00 38.49 4.84
4298 4915 6.732896 TTTGCCATTTTTCCAAGGTACTAA 57.267 33.333 0.00 0.00 38.49 2.24
4299 4916 6.732896 TTTTGCCATTTTTCCAAGGTACTA 57.267 33.333 0.00 0.00 38.49 1.82
4317 4976 6.255453 TGCAAGACTTAAACATGACTTTTTGC 59.745 34.615 0.00 4.22 37.23 3.68
4453 5139 7.650890 TCATAATTATAAGTGCCAATGTGCTG 58.349 34.615 0.00 0.00 0.00 4.41
4632 5319 9.765795 CTCCGTCCTATAATGTAAGATCTTTTT 57.234 33.333 14.36 8.07 0.00 1.94
4633 5320 8.368668 CCTCCGTCCTATAATGTAAGATCTTTT 58.631 37.037 14.36 4.67 0.00 2.27
4634 5321 7.038941 CCCTCCGTCCTATAATGTAAGATCTTT 60.039 40.741 14.36 0.00 0.00 2.52
4635 5322 6.437793 CCCTCCGTCCTATAATGTAAGATCTT 59.562 42.308 13.56 13.56 0.00 2.40
4636 5323 5.952947 CCCTCCGTCCTATAATGTAAGATCT 59.047 44.000 0.00 0.00 0.00 2.75
4637 5324 5.127356 CCCCTCCGTCCTATAATGTAAGATC 59.873 48.000 0.00 0.00 0.00 2.75
4638 5325 5.024118 CCCCTCCGTCCTATAATGTAAGAT 58.976 45.833 0.00 0.00 0.00 2.40
4639 5326 4.413760 CCCCTCCGTCCTATAATGTAAGA 58.586 47.826 0.00 0.00 0.00 2.10
4640 5327 3.514309 CCCCCTCCGTCCTATAATGTAAG 59.486 52.174 0.00 0.00 0.00 2.34
4641 5328 3.116629 ACCCCCTCCGTCCTATAATGTAA 60.117 47.826 0.00 0.00 0.00 2.41
4642 5329 2.452047 ACCCCCTCCGTCCTATAATGTA 59.548 50.000 0.00 0.00 0.00 2.29
4643 5330 1.222298 ACCCCCTCCGTCCTATAATGT 59.778 52.381 0.00 0.00 0.00 2.71
4644 5331 2.025636 ACCCCCTCCGTCCTATAATG 57.974 55.000 0.00 0.00 0.00 1.90
4645 5332 3.601537 AGATACCCCCTCCGTCCTATAAT 59.398 47.826 0.00 0.00 0.00 1.28
4646 5333 2.998910 AGATACCCCCTCCGTCCTATAA 59.001 50.000 0.00 0.00 0.00 0.98
4647 5334 2.310945 CAGATACCCCCTCCGTCCTATA 59.689 54.545 0.00 0.00 0.00 1.31
4648 5335 1.077334 CAGATACCCCCTCCGTCCTAT 59.923 57.143 0.00 0.00 0.00 2.57
4649 5336 0.481567 CAGATACCCCCTCCGTCCTA 59.518 60.000 0.00 0.00 0.00 2.94
4650 5337 1.233369 CAGATACCCCCTCCGTCCT 59.767 63.158 0.00 0.00 0.00 3.85
4651 5338 0.178929 ATCAGATACCCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
4652 5339 2.448453 CTATCAGATACCCCCTCCGTC 58.552 57.143 0.00 0.00 0.00 4.79
4653 5340 1.077334 CCTATCAGATACCCCCTCCGT 59.923 57.143 0.00 0.00 0.00 4.69
4654 5341 1.853963 CCTATCAGATACCCCCTCCG 58.146 60.000 0.00 0.00 0.00 4.63
4655 5342 1.079658 AGCCTATCAGATACCCCCTCC 59.920 57.143 0.00 0.00 0.00 4.30
4656 5343 2.183679 CAGCCTATCAGATACCCCCTC 58.816 57.143 0.00 0.00 0.00 4.30
4657 5344 1.795786 TCAGCCTATCAGATACCCCCT 59.204 52.381 0.00 0.00 0.00 4.79
4658 5345 1.903183 GTCAGCCTATCAGATACCCCC 59.097 57.143 0.00 0.00 0.00 5.40
4659 5346 2.609747 TGTCAGCCTATCAGATACCCC 58.390 52.381 0.00 0.00 0.00 4.95
4660 5347 4.689612 TTTGTCAGCCTATCAGATACCC 57.310 45.455 0.00 0.00 0.00 3.69
4661 5348 5.858381 TCATTTGTCAGCCTATCAGATACC 58.142 41.667 0.00 0.00 0.00 2.73
4662 5349 6.989169 AGTTCATTTGTCAGCCTATCAGATAC 59.011 38.462 0.00 0.00 0.00 2.24
4663 5350 6.988580 CAGTTCATTTGTCAGCCTATCAGATA 59.011 38.462 0.00 0.00 0.00 1.98
4664 5351 5.821470 CAGTTCATTTGTCAGCCTATCAGAT 59.179 40.000 0.00 0.00 0.00 2.90
4729 5445 1.765904 TCAGTCTGTGTTGCCAACCTA 59.234 47.619 4.90 0.00 0.00 3.08
4984 5714 8.438676 AATTTTATCAGATTGTCCTAACTCGG 57.561 34.615 0.00 0.00 0.00 4.63
5045 5779 3.754323 TCATTTTGTTAGCCGGTTAGGTG 59.246 43.478 1.90 0.00 43.70 4.00
5093 5827 5.804639 AGCTTACAGTTGACCAACATGATA 58.195 37.500 14.42 0.07 43.47 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.