Multiple sequence alignment - TraesCS6D01G132200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G132200 chr6D 100.000 3524 0 0 1 3524 99236255 99232732 0.000000e+00 6508.0
1 TraesCS6D01G132200 chr6D 94.340 265 13 2 428 691 434447163 434447426 4.240000e-109 405.0
2 TraesCS6D01G132200 chr6D 89.408 321 29 5 1 320 388554188 388553872 1.970000e-107 399.0
3 TraesCS6D01G132200 chr6D 97.222 36 1 0 382 417 78965802 78965767 1.060000e-05 62.1
4 TraesCS6D01G132200 chr6B 95.423 1857 40 9 753 2574 183611459 183609613 0.000000e+00 2916.0
5 TraesCS6D01G132200 chr6B 100.000 113 0 0 3412 3524 183609615 183609503 3.560000e-50 209.0
6 TraesCS6D01G132200 chr6B 91.089 101 9 0 321 421 154179395 154179495 1.710000e-28 137.0
7 TraesCS6D01G132200 chr6B 100.000 31 0 0 382 412 279196359 279196389 1.370000e-04 58.4
8 TraesCS6D01G132200 chr6A 93.209 1826 52 11 770 2564 119595263 119593479 0.000000e+00 2619.0
9 TraesCS6D01G132200 chr6A 96.190 105 3 1 3420 3524 119593483 119593380 1.680000e-38 171.0
10 TraesCS6D01G132200 chr6A 100.000 29 0 0 3143 3171 507131368 507131396 2.000000e-03 54.7
11 TraesCS6D01G132200 chr6A 100.000 29 0 0 3143 3171 585445132 585445160 2.000000e-03 54.7
12 TraesCS6D01G132200 chr7D 90.185 1834 118 28 751 2554 458355119 458353318 0.000000e+00 2333.0
13 TraesCS6D01G132200 chr7D 90.972 576 40 7 2575 3147 78290553 78291119 0.000000e+00 765.0
14 TraesCS6D01G132200 chr7D 89.655 319 27 6 6 321 575872994 575872679 5.480000e-108 401.0
15 TraesCS6D01G132200 chr7D 87.812 320 33 6 5 320 45193549 45193866 1.550000e-98 370.0
16 TraesCS6D01G132200 chr7D 100.000 29 0 0 3143 3171 458195816 458195844 2.000000e-03 54.7
17 TraesCS6D01G132200 chr7A 89.468 1842 117 35 772 2574 541898595 541900398 0.000000e+00 2255.0
18 TraesCS6D01G132200 chr7A 100.000 30 0 0 3143 3172 157596888 157596859 4.910000e-04 56.5
19 TraesCS6D01G132200 chr7B 90.812 1687 109 19 888 2555 480206126 480204467 0.000000e+00 2215.0
20 TraesCS6D01G132200 chr7B 87.500 320 34 6 4 320 745227061 745227377 7.190000e-97 364.0
21 TraesCS6D01G132200 chr7B 88.235 102 12 0 320 421 649122029 649121928 4.780000e-24 122.0
22 TraesCS6D01G132200 chr2A 88.920 722 80 0 1374 2095 137530269 137529548 0.000000e+00 891.0
23 TraesCS6D01G132200 chr2A 87.556 450 41 4 938 1378 137537785 137537342 1.130000e-139 507.0
24 TraesCS6D01G132200 chr2A 92.565 269 18 2 428 695 568584931 568585198 5.520000e-103 385.0
25 TraesCS6D01G132200 chr2A 100.000 30 0 0 3143 3172 59586478 59586507 4.910000e-04 56.5
26 TraesCS6D01G132200 chr2A 100.000 30 0 0 3143 3172 703352963 703352992 4.910000e-04 56.5
27 TraesCS6D01G132200 chr5D 93.217 575 32 3 2574 3147 559113385 559113953 0.000000e+00 839.0
28 TraesCS6D01G132200 chr5D 92.599 581 27 6 2572 3147 539996110 539996679 0.000000e+00 821.0
29 TraesCS6D01G132200 chr5D 91.508 577 34 6 2574 3147 267620253 267620817 0.000000e+00 780.0
30 TraesCS6D01G132200 chr5D 93.561 264 15 2 428 690 50591451 50591189 3.300000e-105 392.0
31 TraesCS6D01G132200 chr5D 93.284 268 15 3 424 690 119267578 119267843 3.300000e-105 392.0
32 TraesCS6D01G132200 chr5D 94.309 246 12 1 3167 3412 423275248 423275491 3.320000e-100 375.0
33 TraesCS6D01G132200 chr5D 93.902 246 14 1 3169 3414 551893644 551893400 1.550000e-98 370.0
34 TraesCS6D01G132200 chr5D 93.548 248 14 1 3167 3412 559069437 559069190 5.560000e-98 368.0
35 TraesCS6D01G132200 chr5D 87.307 323 34 7 1 320 519198548 519198866 2.590000e-96 363.0
36 TraesCS6D01G132200 chr3D 91.681 577 34 5 2574 3147 336808864 336809429 0.000000e+00 787.0
37 TraesCS6D01G132200 chr3D 92.857 266 17 2 428 692 17858226 17857962 5.520000e-103 385.0
38 TraesCS6D01G132200 chr3D 88.498 313 32 4 1 310 41428439 41428750 3.320000e-100 375.0
39 TraesCS6D01G132200 chr3D 92.063 252 17 2 3167 3418 336811276 336811524 5.600000e-93 351.0
40 TraesCS6D01G132200 chr3D 91.633 251 16 5 3167 3414 500888322 500888570 3.370000e-90 342.0
41 TraesCS6D01G132200 chr5B 90.846 579 46 3 2570 3147 560390618 560390046 0.000000e+00 769.0
42 TraesCS6D01G132200 chr5B 92.509 267 18 2 428 693 269497578 269497843 7.140000e-102 381.0
43 TraesCS6D01G132200 chr5B 92.222 270 19 2 427 695 704984252 704984520 7.140000e-102 381.0
44 TraesCS6D01G132200 chr3A 91.161 577 36 8 2574 3147 697434796 697434232 0.000000e+00 769.0
45 TraesCS6D01G132200 chr3A 93.089 246 17 0 3167 3412 725342286 725342531 9.300000e-96 361.0
46 TraesCS6D01G132200 chr1D 90.988 577 36 7 2574 3147 470206820 470207383 0.000000e+00 763.0
47 TraesCS6D01G132200 chr1D 94.309 246 14 0 3167 3412 470209201 470209446 9.230000e-101 377.0
48 TraesCS6D01G132200 chr1D 87.578 322 34 5 1 320 64115011 64115328 5.560000e-98 368.0
49 TraesCS6D01G132200 chr1D 87.037 54 7 0 2096 2149 399414145 399414092 1.060000e-05 62.1
50 TraesCS6D01G132200 chrUn 90.468 577 46 4 2574 3147 82489424 82489994 0.000000e+00 752.0
51 TraesCS6D01G132200 chrUn 91.089 101 9 0 321 421 234099586 234099686 1.710000e-28 137.0
52 TraesCS6D01G132200 chrUn 88.889 54 4 2 365 417 10390882 10390830 8.170000e-07 65.8
53 TraesCS6D01G132200 chr5A 93.609 266 15 2 426 690 463746466 463746730 2.550000e-106 396.0
54 TraesCS6D01G132200 chr5A 100.000 30 0 0 3143 3172 556781768 556781797 4.910000e-04 56.5
55 TraesCS6D01G132200 chr2B 92.565 269 18 2 426 693 134374479 134374746 5.520000e-103 385.0
56 TraesCS6D01G132200 chr2D 88.401 319 29 7 4 320 121734241 121734553 9.230000e-101 377.0
57 TraesCS6D01G132200 chr2D 94.444 36 2 0 382 417 323745977 323745942 4.910000e-04 56.5
58 TraesCS6D01G132200 chr4B 87.307 323 35 6 1 320 53190949 53190630 7.190000e-97 364.0
59 TraesCS6D01G132200 chr4D 92.000 250 20 0 3167 3416 467821791 467821542 5.600000e-93 351.0
60 TraesCS6D01G132200 chr4A 91.935 248 18 2 3167 3413 600365415 600365661 2.600000e-91 346.0
61 TraesCS6D01G132200 chr3B 89.394 66 7 0 355 420 384727828 384727763 2.250000e-12 84.2
62 TraesCS6D01G132200 chr1B 87.037 54 7 0 2096 2149 535908548 535908495 1.060000e-05 62.1
63 TraesCS6D01G132200 chr1B 87.755 49 6 0 2096 2144 535939125 535939077 1.370000e-04 58.4
64 TraesCS6D01G132200 chr1B 87.755 49 6 0 2096 2144 536121819 536121771 1.370000e-04 58.4
65 TraesCS6D01G132200 chr1A 100.000 29 0 0 3143 3171 49966862 49966890 2.000000e-03 54.7
66 TraesCS6D01G132200 chr1A 100.000 29 0 0 3143 3171 420528516 420528488 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G132200 chr6D 99232732 99236255 3523 True 6508.0 6508 100.0000 1 3524 1 chr6D.!!$R2 3523
1 TraesCS6D01G132200 chr6B 183609503 183611459 1956 True 1562.5 2916 97.7115 753 3524 2 chr6B.!!$R1 2771
2 TraesCS6D01G132200 chr6A 119593380 119595263 1883 True 1395.0 2619 94.6995 770 3524 2 chr6A.!!$R1 2754
3 TraesCS6D01G132200 chr7D 458353318 458355119 1801 True 2333.0 2333 90.1850 751 2554 1 chr7D.!!$R1 1803
4 TraesCS6D01G132200 chr7D 78290553 78291119 566 False 765.0 765 90.9720 2575 3147 1 chr7D.!!$F2 572
5 TraesCS6D01G132200 chr7A 541898595 541900398 1803 False 2255.0 2255 89.4680 772 2574 1 chr7A.!!$F1 1802
6 TraesCS6D01G132200 chr7B 480204467 480206126 1659 True 2215.0 2215 90.8120 888 2555 1 chr7B.!!$R1 1667
7 TraesCS6D01G132200 chr2A 137529548 137530269 721 True 891.0 891 88.9200 1374 2095 1 chr2A.!!$R1 721
8 TraesCS6D01G132200 chr5D 559113385 559113953 568 False 839.0 839 93.2170 2574 3147 1 chr5D.!!$F6 573
9 TraesCS6D01G132200 chr5D 539996110 539996679 569 False 821.0 821 92.5990 2572 3147 1 chr5D.!!$F5 575
10 TraesCS6D01G132200 chr5D 267620253 267620817 564 False 780.0 780 91.5080 2574 3147 1 chr5D.!!$F2 573
11 TraesCS6D01G132200 chr3D 336808864 336811524 2660 False 569.0 787 91.8720 2574 3418 2 chr3D.!!$F3 844
12 TraesCS6D01G132200 chr5B 560390046 560390618 572 True 769.0 769 90.8460 2570 3147 1 chr5B.!!$R1 577
13 TraesCS6D01G132200 chr3A 697434232 697434796 564 True 769.0 769 91.1610 2574 3147 1 chr3A.!!$R1 573
14 TraesCS6D01G132200 chr1D 470206820 470209446 2626 False 570.0 763 92.6485 2574 3412 2 chr1D.!!$F2 838
15 TraesCS6D01G132200 chrUn 82489424 82489994 570 False 752.0 752 90.4680 2574 3147 1 chrUn.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 447 0.033796 TACTCCCTCCGTCCGTGAAT 60.034 55.0 0.0 0.0 0.0 2.57 F
450 451 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2510 1.002868 AGCTTCAGCAAGGCGACAT 60.003 52.632 0.75 0.0 45.16 3.06 R
2584 2706 0.517316 CCTTGTTTAGCACGGCTGTC 59.483 55.000 0.00 0.0 40.10 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.475771 TTTTGTGTGGTAGAAAATTTGATGC 57.524 32.000 0.00 0.00 0.00 3.91
32 33 4.793071 TGTGTGGTAGAAAATTTGATGCG 58.207 39.130 0.00 0.00 0.00 4.73
33 34 4.277174 TGTGTGGTAGAAAATTTGATGCGT 59.723 37.500 0.00 0.00 0.00 5.24
34 35 4.616802 GTGTGGTAGAAAATTTGATGCGTG 59.383 41.667 0.00 0.00 0.00 5.34
35 36 4.517075 TGTGGTAGAAAATTTGATGCGTGA 59.483 37.500 0.00 0.00 0.00 4.35
36 37 5.088739 GTGGTAGAAAATTTGATGCGTGAG 58.911 41.667 0.00 0.00 0.00 3.51
37 38 4.155826 TGGTAGAAAATTTGATGCGTGAGG 59.844 41.667 0.00 0.00 0.00 3.86
38 39 4.156008 GGTAGAAAATTTGATGCGTGAGGT 59.844 41.667 0.00 0.00 0.00 3.85
39 40 4.425577 AGAAAATTTGATGCGTGAGGTC 57.574 40.909 0.00 0.00 0.00 3.85
40 41 3.191371 AGAAAATTTGATGCGTGAGGTCC 59.809 43.478 0.00 0.00 0.00 4.46
41 42 1.086696 AATTTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
48 49 4.598257 CGTGAGGTCCGCTTCAAT 57.402 55.556 0.00 0.00 32.39 2.57
49 50 2.840974 CGTGAGGTCCGCTTCAATT 58.159 52.632 0.00 0.00 32.39 2.32
50 51 1.156736 CGTGAGGTCCGCTTCAATTT 58.843 50.000 0.00 0.00 32.39 1.82
51 52 1.535462 CGTGAGGTCCGCTTCAATTTT 59.465 47.619 0.00 0.00 32.39 1.82
52 53 2.412847 CGTGAGGTCCGCTTCAATTTTC 60.413 50.000 0.00 0.00 32.39 2.29
53 54 2.552315 GTGAGGTCCGCTTCAATTTTCA 59.448 45.455 0.00 0.00 32.39 2.69
54 55 3.004315 GTGAGGTCCGCTTCAATTTTCAA 59.996 43.478 0.00 0.00 32.39 2.69
55 56 3.634448 TGAGGTCCGCTTCAATTTTCAAA 59.366 39.130 0.00 0.00 0.00 2.69
56 57 4.280677 TGAGGTCCGCTTCAATTTTCAAAT 59.719 37.500 0.00 0.00 0.00 2.32
57 58 4.809673 AGGTCCGCTTCAATTTTCAAATC 58.190 39.130 0.00 0.00 0.00 2.17
58 59 4.280677 AGGTCCGCTTCAATTTTCAAATCA 59.719 37.500 0.00 0.00 0.00 2.57
59 60 5.047092 AGGTCCGCTTCAATTTTCAAATCAT 60.047 36.000 0.00 0.00 0.00 2.45
60 61 5.639082 GGTCCGCTTCAATTTTCAAATCATT 59.361 36.000 0.00 0.00 0.00 2.57
61 62 6.147656 GGTCCGCTTCAATTTTCAAATCATTT 59.852 34.615 0.00 0.00 0.00 2.32
62 63 7.011189 GTCCGCTTCAATTTTCAAATCATTTG 58.989 34.615 3.46 3.46 41.96 2.32
63 64 6.147492 TCCGCTTCAATTTTCAAATCATTTGG 59.853 34.615 10.30 0.00 40.98 3.28
64 65 6.147492 CCGCTTCAATTTTCAAATCATTTGGA 59.853 34.615 10.30 0.00 40.98 3.53
65 66 7.011189 CGCTTCAATTTTCAAATCATTTGGAC 58.989 34.615 10.30 0.00 40.98 4.02
66 67 7.307278 CGCTTCAATTTTCAAATCATTTGGACA 60.307 33.333 10.30 0.00 40.98 4.02
67 68 8.508875 GCTTCAATTTTCAAATCATTTGGACAT 58.491 29.630 10.30 0.00 40.98 3.06
69 70 9.781633 TTCAATTTTCAAATCATTTGGACATCT 57.218 25.926 10.30 0.00 40.98 2.90
70 71 9.210329 TCAATTTTCAAATCATTTGGACATCTG 57.790 29.630 10.30 2.83 40.98 2.90
71 72 9.210329 CAATTTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
72 73 8.997621 ATTTTCAAATCATTTGGACATCTGAG 57.002 30.769 10.30 0.00 40.98 3.35
73 74 6.519679 TTCAAATCATTTGGACATCTGAGG 57.480 37.500 10.30 0.00 40.98 3.86
74 75 5.818887 TCAAATCATTTGGACATCTGAGGA 58.181 37.500 10.30 0.00 40.98 3.71
75 76 5.884232 TCAAATCATTTGGACATCTGAGGAG 59.116 40.000 10.30 0.00 40.98 3.69
76 77 3.272574 TCATTTGGACATCTGAGGAGC 57.727 47.619 0.00 0.00 0.00 4.70
77 78 2.842496 TCATTTGGACATCTGAGGAGCT 59.158 45.455 0.00 0.00 0.00 4.09
78 79 3.118482 TCATTTGGACATCTGAGGAGCTC 60.118 47.826 4.71 4.71 0.00 4.09
79 80 2.244486 TTGGACATCTGAGGAGCTCT 57.756 50.000 14.64 0.00 0.00 4.09
80 81 1.774110 TGGACATCTGAGGAGCTCTC 58.226 55.000 14.64 9.73 42.74 3.20
88 89 2.936919 TGAGGAGCTCTCAGCAAAAA 57.063 45.000 14.64 0.00 46.71 1.94
114 115 9.912634 AAGACAATTCAGTGGTATGTAAAAATG 57.087 29.630 0.00 0.00 0.00 2.32
115 116 9.077885 AGACAATTCAGTGGTATGTAAAAATGT 57.922 29.630 0.00 0.00 0.00 2.71
116 117 9.691362 GACAATTCAGTGGTATGTAAAAATGTT 57.309 29.630 0.00 0.00 0.00 2.71
122 123 9.344772 TCAGTGGTATGTAAAAATGTTTACTGT 57.655 29.630 17.45 10.01 46.29 3.55
123 124 9.959749 CAGTGGTATGTAAAAATGTTTACTGTT 57.040 29.630 17.45 7.09 46.29 3.16
125 126 9.953697 GTGGTATGTAAAAATGTTTACTGTTCA 57.046 29.630 17.45 9.46 46.29 3.18
139 140 9.632807 TGTTTACTGTTCATATATTGTTTTGGC 57.367 29.630 0.00 0.00 0.00 4.52
140 141 9.083080 GTTTACTGTTCATATATTGTTTTGGCC 57.917 33.333 0.00 0.00 0.00 5.36
141 142 8.588290 TTACTGTTCATATATTGTTTTGGCCT 57.412 30.769 3.32 0.00 0.00 5.19
142 143 6.866480 ACTGTTCATATATTGTTTTGGCCTG 58.134 36.000 3.32 0.00 0.00 4.85
143 144 6.663093 ACTGTTCATATATTGTTTTGGCCTGA 59.337 34.615 3.32 0.00 0.00 3.86
144 145 7.342799 ACTGTTCATATATTGTTTTGGCCTGAT 59.657 33.333 3.32 0.00 0.00 2.90
145 146 8.076910 TGTTCATATATTGTTTTGGCCTGATT 57.923 30.769 3.32 0.00 0.00 2.57
146 147 8.538701 TGTTCATATATTGTTTTGGCCTGATTT 58.461 29.630 3.32 0.00 0.00 2.17
147 148 8.819974 GTTCATATATTGTTTTGGCCTGATTTG 58.180 33.333 3.32 0.00 0.00 2.32
148 149 8.076910 TCATATATTGTTTTGGCCTGATTTGT 57.923 30.769 3.32 0.00 0.00 2.83
149 150 8.196771 TCATATATTGTTTTGGCCTGATTTGTC 58.803 33.333 3.32 0.00 0.00 3.18
150 151 4.961438 ATTGTTTTGGCCTGATTTGTCT 57.039 36.364 3.32 0.00 0.00 3.41
151 152 4.751767 TTGTTTTGGCCTGATTTGTCTT 57.248 36.364 3.32 0.00 0.00 3.01
152 153 4.751767 TGTTTTGGCCTGATTTGTCTTT 57.248 36.364 3.32 0.00 0.00 2.52
153 154 5.096443 TGTTTTGGCCTGATTTGTCTTTT 57.904 34.783 3.32 0.00 0.00 2.27
154 155 5.495640 TGTTTTGGCCTGATTTGTCTTTTT 58.504 33.333 3.32 0.00 0.00 1.94
178 179 3.665544 GAGAGCTGCTCAGATGTCC 57.334 57.895 29.49 2.47 43.38 4.02
179 180 0.822811 GAGAGCTGCTCAGATGTCCA 59.177 55.000 29.49 0.00 43.38 4.02
180 181 1.206610 GAGAGCTGCTCAGATGTCCAA 59.793 52.381 29.49 0.00 43.38 3.53
181 182 1.627329 AGAGCTGCTCAGATGTCCAAA 59.373 47.619 29.49 0.00 32.06 3.28
182 183 2.239150 AGAGCTGCTCAGATGTCCAAAT 59.761 45.455 29.49 3.19 32.06 2.32
183 184 2.355132 GAGCTGCTCAGATGTCCAAATG 59.645 50.000 24.02 0.00 0.00 2.32
184 185 2.026542 AGCTGCTCAGATGTCCAAATGA 60.027 45.455 0.00 0.00 0.00 2.57
185 186 2.097142 GCTGCTCAGATGTCCAAATGAC 59.903 50.000 0.29 0.00 44.72 3.06
186 187 3.607741 CTGCTCAGATGTCCAAATGACT 58.392 45.455 0.00 0.00 44.75 3.41
187 188 4.008330 CTGCTCAGATGTCCAAATGACTT 58.992 43.478 0.00 0.00 44.75 3.01
188 189 5.164620 TGCTCAGATGTCCAAATGACTTA 57.835 39.130 0.00 0.00 44.75 2.24
189 190 5.559770 TGCTCAGATGTCCAAATGACTTAA 58.440 37.500 0.00 0.00 44.75 1.85
190 191 6.003326 TGCTCAGATGTCCAAATGACTTAAA 58.997 36.000 0.00 0.00 44.75 1.52
191 192 6.489700 TGCTCAGATGTCCAAATGACTTAAAA 59.510 34.615 0.00 0.00 44.75 1.52
192 193 7.177216 TGCTCAGATGTCCAAATGACTTAAAAT 59.823 33.333 0.00 0.00 44.75 1.82
193 194 8.031277 GCTCAGATGTCCAAATGACTTAAAATT 58.969 33.333 0.00 0.00 44.75 1.82
194 195 9.918630 CTCAGATGTCCAAATGACTTAAAATTT 57.081 29.630 0.00 0.00 44.75 1.82
195 196 9.695526 TCAGATGTCCAAATGACTTAAAATTTG 57.304 29.630 0.00 9.43 44.75 2.32
201 202 6.393720 CAAATGACTTAAAATTTGGAGCGG 57.606 37.500 0.00 0.00 39.19 5.52
202 203 4.718940 ATGACTTAAAATTTGGAGCGGG 57.281 40.909 0.00 0.00 0.00 6.13
203 204 2.230266 TGACTTAAAATTTGGAGCGGGC 59.770 45.455 0.00 0.00 0.00 6.13
204 205 1.548719 ACTTAAAATTTGGAGCGGGCC 59.451 47.619 0.00 0.00 0.00 5.80
205 206 1.824852 CTTAAAATTTGGAGCGGGCCT 59.175 47.619 0.84 0.00 0.00 5.19
206 207 1.470051 TAAAATTTGGAGCGGGCCTC 58.530 50.000 0.84 0.00 39.98 4.70
207 208 0.251787 AAAATTTGGAGCGGGCCTCT 60.252 50.000 0.84 0.00 40.57 3.69
208 209 0.681243 AAATTTGGAGCGGGCCTCTC 60.681 55.000 15.24 15.24 40.57 3.20
209 210 2.876368 AATTTGGAGCGGGCCTCTCG 62.876 60.000 16.85 7.38 40.57 4.04
216 217 2.125147 CGGGCCTCTCGCATCAAA 60.125 61.111 0.84 0.00 40.31 2.69
217 218 1.524621 CGGGCCTCTCGCATCAAAT 60.525 57.895 0.84 0.00 40.31 2.32
218 219 1.097547 CGGGCCTCTCGCATCAAATT 61.098 55.000 0.84 0.00 40.31 1.82
219 220 1.106285 GGGCCTCTCGCATCAAATTT 58.894 50.000 0.84 0.00 40.31 1.82
220 221 1.478105 GGGCCTCTCGCATCAAATTTT 59.522 47.619 0.84 0.00 40.31 1.82
221 222 2.480244 GGGCCTCTCGCATCAAATTTTC 60.480 50.000 0.84 0.00 40.31 2.29
222 223 2.424956 GGCCTCTCGCATCAAATTTTCT 59.575 45.455 0.00 0.00 40.31 2.52
223 224 3.627577 GGCCTCTCGCATCAAATTTTCTA 59.372 43.478 0.00 0.00 40.31 2.10
224 225 4.496507 GGCCTCTCGCATCAAATTTTCTAC 60.497 45.833 0.00 0.00 40.31 2.59
225 226 4.496507 GCCTCTCGCATCAAATTTTCTACC 60.497 45.833 0.00 0.00 37.47 3.18
226 227 4.260375 CCTCTCGCATCAAATTTTCTACCG 60.260 45.833 0.00 0.00 0.00 4.02
227 228 3.063452 TCTCGCATCAAATTTTCTACCGC 59.937 43.478 0.00 0.00 0.00 5.68
228 229 2.744741 TCGCATCAAATTTTCTACCGCA 59.255 40.909 0.00 0.00 0.00 5.69
229 230 2.845967 CGCATCAAATTTTCTACCGCAC 59.154 45.455 0.00 0.00 0.00 5.34
230 231 3.669290 CGCATCAAATTTTCTACCGCACA 60.669 43.478 0.00 0.00 0.00 4.57
231 232 4.233789 GCATCAAATTTTCTACCGCACAA 58.766 39.130 0.00 0.00 0.00 3.33
232 233 4.683781 GCATCAAATTTTCTACCGCACAAA 59.316 37.500 0.00 0.00 0.00 2.83
233 234 5.176590 GCATCAAATTTTCTACCGCACAAAA 59.823 36.000 0.00 0.00 0.00 2.44
234 235 6.292596 GCATCAAATTTTCTACCGCACAAAAA 60.293 34.615 0.00 0.00 0.00 1.94
297 298 4.630894 TTTTTCTAACCGGCTGCATATG 57.369 40.909 0.00 0.00 0.00 1.78
298 299 3.552132 TTTCTAACCGGCTGCATATGA 57.448 42.857 6.97 0.00 0.00 2.15
299 300 2.820059 TCTAACCGGCTGCATATGAG 57.180 50.000 6.97 2.46 0.00 2.90
300 301 1.151668 CTAACCGGCTGCATATGAGC 58.848 55.000 6.97 12.10 35.57 4.26
306 307 2.851798 GCTGCATATGAGCCTAGGC 58.148 57.895 27.19 27.19 42.33 3.93
307 308 0.035881 GCTGCATATGAGCCTAGGCA 59.964 55.000 34.70 16.70 44.88 4.75
308 309 1.805869 CTGCATATGAGCCTAGGCAC 58.194 55.000 34.70 28.76 44.88 5.01
309 310 0.397941 TGCATATGAGCCTAGGCACC 59.602 55.000 34.70 24.85 44.88 5.01
310 311 0.671781 GCATATGAGCCTAGGCACCG 60.672 60.000 34.70 17.40 44.88 4.94
311 312 0.969149 CATATGAGCCTAGGCACCGA 59.031 55.000 34.70 19.02 44.88 4.69
312 313 1.344438 CATATGAGCCTAGGCACCGAA 59.656 52.381 34.70 16.69 44.88 4.30
313 314 1.491668 TATGAGCCTAGGCACCGAAA 58.508 50.000 34.70 13.72 44.88 3.46
314 315 0.107654 ATGAGCCTAGGCACCGAAAC 60.108 55.000 34.70 16.10 44.88 2.78
315 316 1.810030 GAGCCTAGGCACCGAAACG 60.810 63.158 34.70 0.00 44.88 3.60
316 317 3.497031 GCCTAGGCACCGAAACGC 61.497 66.667 29.33 0.00 41.49 4.84
321 322 3.292159 GGCACCGAAACGCCCTTT 61.292 61.111 0.00 0.00 42.82 3.11
322 323 1.967494 GGCACCGAAACGCCCTTTA 60.967 57.895 0.00 0.00 42.82 1.85
323 324 1.310216 GGCACCGAAACGCCCTTTAT 61.310 55.000 0.00 0.00 42.82 1.40
324 325 1.371595 GCACCGAAACGCCCTTTATA 58.628 50.000 0.00 0.00 0.00 0.98
325 326 1.329599 GCACCGAAACGCCCTTTATAG 59.670 52.381 0.00 0.00 0.00 1.31
326 327 1.329599 CACCGAAACGCCCTTTATAGC 59.670 52.381 0.00 0.00 0.00 2.97
327 328 0.942252 CCGAAACGCCCTTTATAGCC 59.058 55.000 0.00 0.00 0.00 3.93
328 329 1.658994 CGAAACGCCCTTTATAGCCA 58.341 50.000 0.00 0.00 0.00 4.75
329 330 2.011222 CGAAACGCCCTTTATAGCCAA 58.989 47.619 0.00 0.00 0.00 4.52
330 331 2.616842 CGAAACGCCCTTTATAGCCAAT 59.383 45.455 0.00 0.00 0.00 3.16
331 332 3.066203 CGAAACGCCCTTTATAGCCAATT 59.934 43.478 0.00 0.00 0.00 2.32
332 333 4.273969 CGAAACGCCCTTTATAGCCAATTA 59.726 41.667 0.00 0.00 0.00 1.40
333 334 5.048991 CGAAACGCCCTTTATAGCCAATTAT 60.049 40.000 0.00 0.00 0.00 1.28
334 335 6.514376 CGAAACGCCCTTTATAGCCAATTATT 60.514 38.462 0.00 0.00 0.00 1.40
335 336 7.308109 CGAAACGCCCTTTATAGCCAATTATTA 60.308 37.037 0.00 0.00 0.00 0.98
336 337 8.417273 AAACGCCCTTTATAGCCAATTATTAT 57.583 30.769 0.00 0.00 0.00 1.28
337 338 9.523168 AAACGCCCTTTATAGCCAATTATTATA 57.477 29.630 0.00 0.00 0.00 0.98
338 339 9.695155 AACGCCCTTTATAGCCAATTATTATAT 57.305 29.630 0.00 0.00 0.00 0.86
339 340 9.120538 ACGCCCTTTATAGCCAATTATTATATG 57.879 33.333 0.00 0.00 0.00 1.78
340 341 9.120538 CGCCCTTTATAGCCAATTATTATATGT 57.879 33.333 0.00 0.00 0.00 2.29
374 375 9.797642 ATTAGATTGACTATAAATGACATGGCA 57.202 29.630 2.18 2.18 0.00 4.92
375 376 9.625747 TTAGATTGACTATAAATGACATGGCAA 57.374 29.630 4.70 0.00 0.00 4.52
376 377 7.934457 AGATTGACTATAAATGACATGGCAAC 58.066 34.615 4.70 0.00 0.00 4.17
377 378 7.776969 AGATTGACTATAAATGACATGGCAACT 59.223 33.333 4.70 0.00 37.61 3.16
378 379 7.701539 TTGACTATAAATGACATGGCAACTT 57.298 32.000 4.70 4.74 37.61 2.66
379 380 7.087409 TGACTATAAATGACATGGCAACTTG 57.913 36.000 4.70 0.00 46.64 3.16
392 393 4.513198 GGCAACTTGTTATAGCCAACAA 57.487 40.909 8.01 8.17 44.10 2.83
393 394 4.234574 GGCAACTTGTTATAGCCAACAAC 58.765 43.478 8.01 0.00 42.08 3.32
394 395 4.022329 GGCAACTTGTTATAGCCAACAACT 60.022 41.667 8.01 0.00 42.08 3.16
395 396 4.917415 GCAACTTGTTATAGCCAACAACTG 59.083 41.667 5.11 6.85 42.08 3.16
414 415 9.965824 AACAACTGGCTATATTATTAAACATGC 57.034 29.630 0.00 0.00 0.00 4.06
415 416 9.354673 ACAACTGGCTATATTATTAAACATGCT 57.645 29.630 0.00 0.00 0.00 3.79
416 417 9.831737 CAACTGGCTATATTATTAAACATGCTC 57.168 33.333 0.00 0.00 0.00 4.26
417 418 9.573166 AACTGGCTATATTATTAAACATGCTCA 57.427 29.630 0.00 0.00 0.00 4.26
418 419 9.745018 ACTGGCTATATTATTAAACATGCTCAT 57.255 29.630 0.00 0.00 0.00 2.90
427 428 9.618890 ATTATTAAACATGCTCATAGACACTGT 57.381 29.630 0.00 0.00 0.00 3.55
429 430 7.827819 TTAAACATGCTCATAGACACTGTAC 57.172 36.000 0.00 0.00 0.00 2.90
430 431 5.667539 AACATGCTCATAGACACTGTACT 57.332 39.130 0.00 0.00 0.00 2.73
431 432 5.255710 ACATGCTCATAGACACTGTACTC 57.744 43.478 0.00 0.00 0.00 2.59
432 433 4.098654 ACATGCTCATAGACACTGTACTCC 59.901 45.833 0.00 0.00 0.00 3.85
433 434 3.024547 TGCTCATAGACACTGTACTCCC 58.975 50.000 0.00 0.00 0.00 4.30
434 435 3.292460 GCTCATAGACACTGTACTCCCT 58.708 50.000 0.00 0.00 0.00 4.20
435 436 3.316868 GCTCATAGACACTGTACTCCCTC 59.683 52.174 0.00 0.00 0.00 4.30
436 437 3.886505 CTCATAGACACTGTACTCCCTCC 59.113 52.174 0.00 0.00 0.00 4.30
437 438 2.414994 TAGACACTGTACTCCCTCCG 57.585 55.000 0.00 0.00 0.00 4.63
438 439 0.404812 AGACACTGTACTCCCTCCGT 59.595 55.000 0.00 0.00 0.00 4.69
439 440 0.810016 GACACTGTACTCCCTCCGTC 59.190 60.000 0.00 0.00 0.00 4.79
440 441 0.611340 ACACTGTACTCCCTCCGTCC 60.611 60.000 0.00 0.00 0.00 4.79
441 442 1.378250 ACTGTACTCCCTCCGTCCG 60.378 63.158 0.00 0.00 0.00 4.79
442 443 1.378250 CTGTACTCCCTCCGTCCGT 60.378 63.158 0.00 0.00 0.00 4.69
443 444 1.654954 CTGTACTCCCTCCGTCCGTG 61.655 65.000 0.00 0.00 0.00 4.94
444 445 1.377725 GTACTCCCTCCGTCCGTGA 60.378 63.158 0.00 0.00 0.00 4.35
445 446 0.962356 GTACTCCCTCCGTCCGTGAA 60.962 60.000 0.00 0.00 0.00 3.18
446 447 0.033796 TACTCCCTCCGTCCGTGAAT 60.034 55.000 0.00 0.00 0.00 2.57
447 448 0.033796 ACTCCCTCCGTCCGTGAATA 60.034 55.000 0.00 0.00 0.00 1.75
448 449 1.108776 CTCCCTCCGTCCGTGAATAA 58.891 55.000 0.00 0.00 0.00 1.40
449 450 1.067212 CTCCCTCCGTCCGTGAATAAG 59.933 57.143 0.00 0.00 0.00 1.73
450 451 0.822164 CCCTCCGTCCGTGAATAAGT 59.178 55.000 0.00 0.00 0.00 2.24
451 452 1.470979 CCCTCCGTCCGTGAATAAGTG 60.471 57.143 0.00 0.00 0.00 3.16
452 453 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
453 454 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
454 455 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
455 456 3.084039 TCCGTCCGTGAATAAGTGTACT 58.916 45.455 0.00 0.00 0.00 2.73
456 457 3.507233 TCCGTCCGTGAATAAGTGTACTT 59.493 43.478 2.51 2.51 39.85 2.24
457 458 3.855950 CCGTCCGTGAATAAGTGTACTTC 59.144 47.826 0.00 0.00 37.40 3.01
458 459 4.380233 CCGTCCGTGAATAAGTGTACTTCT 60.380 45.833 0.00 0.00 37.40 2.85
459 460 5.163723 CCGTCCGTGAATAAGTGTACTTCTA 60.164 44.000 0.00 0.00 37.40 2.10
460 461 6.317088 CGTCCGTGAATAAGTGTACTTCTAA 58.683 40.000 0.00 0.00 37.40 2.10
461 462 6.250104 CGTCCGTGAATAAGTGTACTTCTAAC 59.750 42.308 0.00 0.00 37.40 2.34
462 463 7.311408 GTCCGTGAATAAGTGTACTTCTAACT 58.689 38.462 0.00 0.00 37.40 2.24
463 464 7.811713 GTCCGTGAATAAGTGTACTTCTAACTT 59.188 37.037 0.00 0.00 37.40 2.66
464 465 8.362639 TCCGTGAATAAGTGTACTTCTAACTTT 58.637 33.333 0.00 0.00 37.40 2.66
465 466 8.985805 CCGTGAATAAGTGTACTTCTAACTTTT 58.014 33.333 0.00 0.00 37.40 2.27
466 467 9.793245 CGTGAATAAGTGTACTTCTAACTTTTG 57.207 33.333 0.00 0.00 37.40 2.44
497 498 9.508642 AAGTCAAAGTTTTAAATTTTGGACCAA 57.491 25.926 20.13 1.69 33.70 3.67
498 499 8.941977 AGTCAAAGTTTTAAATTTTGGACCAAC 58.058 29.630 20.13 12.98 33.70 3.77
499 500 8.941977 GTCAAAGTTTTAAATTTTGGACCAACT 58.058 29.630 20.13 0.00 33.70 3.16
610 611 8.934507 AGTGTGATAGATGCTAGTACTTTTTC 57.065 34.615 0.00 0.00 0.00 2.29
611 612 7.982354 AGTGTGATAGATGCTAGTACTTTTTCC 59.018 37.037 0.00 0.00 0.00 3.13
612 613 7.982354 GTGTGATAGATGCTAGTACTTTTTCCT 59.018 37.037 0.00 0.00 0.00 3.36
613 614 9.197306 TGTGATAGATGCTAGTACTTTTTCCTA 57.803 33.333 0.00 0.00 0.00 2.94
622 623 9.444600 TGCTAGTACTTTTTCCTATAAAGTTGG 57.555 33.333 0.00 0.00 41.69 3.77
623 624 9.445878 GCTAGTACTTTTTCCTATAAAGTTGGT 57.554 33.333 0.00 0.00 41.69 3.67
626 627 9.856162 AGTACTTTTTCCTATAAAGTTGGTCAA 57.144 29.630 6.33 0.00 41.69 3.18
629 630 9.197306 ACTTTTTCCTATAAAGTTGGTCAAAGT 57.803 29.630 0.00 0.00 41.69 2.66
652 653 8.584063 AGTTTTAAAACTTTGACCTAGGACAA 57.416 30.769 24.66 20.70 46.52 3.18
653 654 9.027202 AGTTTTAAAACTTTGACCTAGGACAAA 57.973 29.630 29.31 29.31 46.52 2.83
654 655 9.642327 GTTTTAAAACTTTGACCTAGGACAAAA 57.358 29.630 30.29 18.09 38.70 2.44
655 656 9.863845 TTTTAAAACTTTGACCTAGGACAAAAG 57.136 29.630 30.29 26.17 38.70 2.27
656 657 8.584063 TTAAAACTTTGACCTAGGACAAAAGT 57.416 30.769 30.29 26.66 38.70 2.66
657 658 7.476540 AAAACTTTGACCTAGGACAAAAGTT 57.523 32.000 30.29 29.31 38.70 2.66
658 659 8.584063 AAAACTTTGACCTAGGACAAAAGTTA 57.416 30.769 31.16 18.07 38.70 2.24
659 660 7.803279 AACTTTGACCTAGGACAAAAGTTAG 57.197 36.000 30.60 24.27 38.70 2.34
660 661 7.133133 ACTTTGACCTAGGACAAAAGTTAGA 57.867 36.000 30.29 13.98 38.70 2.10
661 662 7.571025 ACTTTGACCTAGGACAAAAGTTAGAA 58.429 34.615 30.29 13.39 38.70 2.10
662 663 7.715686 ACTTTGACCTAGGACAAAAGTTAGAAG 59.284 37.037 30.29 21.51 38.70 2.85
663 664 6.742559 TGACCTAGGACAAAAGTTAGAAGT 57.257 37.500 17.98 0.00 0.00 3.01
664 665 7.844493 TGACCTAGGACAAAAGTTAGAAGTA 57.156 36.000 17.98 0.00 0.00 2.24
665 666 7.664758 TGACCTAGGACAAAAGTTAGAAGTAC 58.335 38.462 17.98 0.00 0.00 2.73
666 667 7.288389 TGACCTAGGACAAAAGTTAGAAGTACA 59.712 37.037 17.98 0.00 0.00 2.90
667 668 7.440198 ACCTAGGACAAAAGTTAGAAGTACAC 58.560 38.462 17.98 0.00 0.00 2.90
668 669 7.289549 ACCTAGGACAAAAGTTAGAAGTACACT 59.710 37.037 17.98 0.00 0.00 3.55
669 670 8.148999 CCTAGGACAAAAGTTAGAAGTACACTT 58.851 37.037 1.05 0.00 39.23 3.16
676 677 9.793245 CAAAAGTTAGAAGTACACTTATTCACG 57.207 33.333 0.00 0.00 36.11 4.35
677 678 8.530269 AAAGTTAGAAGTACACTTATTCACGG 57.470 34.615 0.00 0.00 36.11 4.94
678 679 7.458409 AGTTAGAAGTACACTTATTCACGGA 57.542 36.000 0.00 0.00 36.11 4.69
679 680 7.311408 AGTTAGAAGTACACTTATTCACGGAC 58.689 38.462 0.00 0.00 36.11 4.79
680 681 4.730657 AGAAGTACACTTATTCACGGACG 58.269 43.478 0.00 0.00 36.11 4.79
681 682 3.498927 AGTACACTTATTCACGGACGG 57.501 47.619 0.00 0.00 0.00 4.79
682 683 3.084039 AGTACACTTATTCACGGACGGA 58.916 45.455 0.00 0.00 0.00 4.69
683 684 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
684 685 2.165167 ACACTTATTCACGGACGGAGA 58.835 47.619 0.00 0.00 0.00 3.71
685 686 2.163815 ACACTTATTCACGGACGGAGAG 59.836 50.000 0.00 0.00 0.00 3.20
686 687 2.422479 CACTTATTCACGGACGGAGAGA 59.578 50.000 0.00 0.00 0.00 3.10
687 688 2.683867 ACTTATTCACGGACGGAGAGAG 59.316 50.000 0.00 0.00 0.00 3.20
688 689 2.414994 TATTCACGGACGGAGAGAGT 57.585 50.000 0.00 0.00 0.00 3.24
689 690 2.414994 ATTCACGGACGGAGAGAGTA 57.585 50.000 0.00 0.00 0.00 2.59
690 691 2.414994 TTCACGGACGGAGAGAGTAT 57.585 50.000 0.00 0.00 0.00 2.12
691 692 1.664873 TCACGGACGGAGAGAGTATG 58.335 55.000 0.00 0.00 0.00 2.39
692 693 1.065636 TCACGGACGGAGAGAGTATGT 60.066 52.381 0.00 0.00 0.00 2.29
693 694 1.064208 CACGGACGGAGAGAGTATGTG 59.936 57.143 0.00 0.00 0.00 3.21
694 695 1.065636 ACGGACGGAGAGAGTATGTGA 60.066 52.381 0.00 0.00 0.00 3.58
695 696 1.331138 CGGACGGAGAGAGTATGTGAC 59.669 57.143 0.00 0.00 0.00 3.67
696 697 2.366533 GGACGGAGAGAGTATGTGACA 58.633 52.381 0.00 0.00 0.00 3.58
697 698 2.356382 GGACGGAGAGAGTATGTGACAG 59.644 54.545 0.00 0.00 0.00 3.51
698 699 2.356382 GACGGAGAGAGTATGTGACAGG 59.644 54.545 0.00 0.00 0.00 4.00
699 700 2.026169 ACGGAGAGAGTATGTGACAGGA 60.026 50.000 0.00 0.00 0.00 3.86
700 701 3.218453 CGGAGAGAGTATGTGACAGGAT 58.782 50.000 0.00 0.00 0.00 3.24
701 702 3.634448 CGGAGAGAGTATGTGACAGGATT 59.366 47.826 0.00 0.00 0.00 3.01
702 703 4.498850 CGGAGAGAGTATGTGACAGGATTG 60.499 50.000 0.00 0.00 0.00 2.67
703 704 4.404073 GGAGAGAGTATGTGACAGGATTGT 59.596 45.833 0.00 0.00 41.18 2.71
704 705 5.594725 GGAGAGAGTATGTGACAGGATTGTA 59.405 44.000 0.00 0.00 37.76 2.41
705 706 6.266558 GGAGAGAGTATGTGACAGGATTGTAT 59.733 42.308 0.00 0.00 37.76 2.29
706 707 7.448777 GGAGAGAGTATGTGACAGGATTGTATA 59.551 40.741 0.00 0.00 37.76 1.47
707 708 8.768501 AGAGAGTATGTGACAGGATTGTATAA 57.231 34.615 0.00 0.00 37.76 0.98
708 709 9.373450 AGAGAGTATGTGACAGGATTGTATAAT 57.627 33.333 0.00 0.00 37.76 1.28
709 710 9.988815 GAGAGTATGTGACAGGATTGTATAATT 57.011 33.333 0.00 0.00 37.76 1.40
710 711 9.770097 AGAGTATGTGACAGGATTGTATAATTG 57.230 33.333 0.00 0.00 37.76 2.32
711 712 9.764363 GAGTATGTGACAGGATTGTATAATTGA 57.236 33.333 0.00 0.00 37.76 2.57
793 799 1.298339 GTGTGTGCACCGAAACTGC 60.298 57.895 15.69 0.00 39.61 4.40
795 801 1.100463 TGTGTGCACCGAAACTGCAT 61.100 50.000 15.69 0.00 46.08 3.96
828 843 7.840342 AGAAAGTGTCTGCAATAATACAGAG 57.160 36.000 0.00 0.00 43.30 3.35
829 844 7.615403 AGAAAGTGTCTGCAATAATACAGAGA 58.385 34.615 0.00 0.00 43.30 3.10
830 845 8.263640 AGAAAGTGTCTGCAATAATACAGAGAT 58.736 33.333 0.00 0.00 43.30 2.75
831 846 9.534565 GAAAGTGTCTGCAATAATACAGAGATA 57.465 33.333 0.00 0.00 43.30 1.98
832 847 8.879342 AAGTGTCTGCAATAATACAGAGATAC 57.121 34.615 0.00 0.00 43.30 2.24
833 848 8.011844 AGTGTCTGCAATAATACAGAGATACA 57.988 34.615 0.00 0.00 43.30 2.29
834 849 8.140628 AGTGTCTGCAATAATACAGAGATACAG 58.859 37.037 0.00 0.00 43.30 2.74
835 850 8.138074 GTGTCTGCAATAATACAGAGATACAGA 58.862 37.037 0.00 0.00 43.30 3.41
1016 1086 1.305129 CCATGGCCATCACCACCAA 60.305 57.895 17.61 0.00 44.17 3.67
1035 1105 3.894947 AACAACAACGGTGCCGCC 61.895 61.111 10.87 0.00 44.19 6.13
1175 1245 1.398692 GTGCACCAAAAGAACCTCCA 58.601 50.000 5.22 0.00 0.00 3.86
1631 1727 2.184322 CCCGGACACGATCACCAG 59.816 66.667 0.73 0.00 44.60 4.00
1953 2049 2.202544 GTCTCCGACGAGCAGCTG 60.203 66.667 10.11 10.11 35.94 4.24
2405 2510 3.299977 CGACGGTGGGACCTCACA 61.300 66.667 13.16 0.00 39.27 3.58
2546 2664 5.695851 AAAATAACTTCAGCTCCTGTGTG 57.304 39.130 0.00 0.00 32.61 3.82
2547 2665 4.357918 AATAACTTCAGCTCCTGTGTGT 57.642 40.909 0.00 0.00 32.61 3.72
2592 2714 1.153745 GAGCATCTTCGACAGCCGT 60.154 57.895 0.00 0.00 39.75 5.68
2608 2730 1.964373 CGTGCTAAACAAGGGCCGT 60.964 57.895 0.00 0.00 0.00 5.68
2640 2764 0.452122 GTCAGTTTAACGCGCGCAAT 60.452 50.000 32.58 21.12 0.00 3.56
2681 2805 4.142047 CACAATAACCGCGCGCGT 62.142 61.111 45.51 33.39 37.81 6.01
2700 2824 1.208776 GTGGTATAAGGAGTTGGGCGT 59.791 52.381 0.00 0.00 0.00 5.68
2936 3069 3.546543 CGCAATCCCTAGCCCGGA 61.547 66.667 0.73 0.00 0.00 5.14
3081 3216 1.414158 CTCCTCGAAGCTCCCCAATA 58.586 55.000 0.00 0.00 0.00 1.90
3122 3257 2.932614 CAAGACATCGGCGAAGAAGAAT 59.067 45.455 19.81 0.00 0.00 2.40
3381 5375 2.239201 GCAAACTAGTTTTTAGCGCGG 58.761 47.619 18.25 5.97 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.254252 CGCATCAAATTTTCTACCACACAAAAA 60.254 33.333 0.00 0.00 0.00 1.94
7 8 6.199908 CGCATCAAATTTTCTACCACACAAAA 59.800 34.615 0.00 0.00 0.00 2.44
8 9 5.689514 CGCATCAAATTTTCTACCACACAAA 59.310 36.000 0.00 0.00 0.00 2.83
9 10 5.218885 CGCATCAAATTTTCTACCACACAA 58.781 37.500 0.00 0.00 0.00 3.33
10 11 4.277174 ACGCATCAAATTTTCTACCACACA 59.723 37.500 0.00 0.00 0.00 3.72
11 12 4.616802 CACGCATCAAATTTTCTACCACAC 59.383 41.667 0.00 0.00 0.00 3.82
12 13 4.517075 TCACGCATCAAATTTTCTACCACA 59.483 37.500 0.00 0.00 0.00 4.17
13 14 5.041951 TCACGCATCAAATTTTCTACCAC 57.958 39.130 0.00 0.00 0.00 4.16
14 15 4.155826 CCTCACGCATCAAATTTTCTACCA 59.844 41.667 0.00 0.00 0.00 3.25
15 16 4.156008 ACCTCACGCATCAAATTTTCTACC 59.844 41.667 0.00 0.00 0.00 3.18
16 17 5.296813 ACCTCACGCATCAAATTTTCTAC 57.703 39.130 0.00 0.00 0.00 2.59
17 18 4.394920 GGACCTCACGCATCAAATTTTCTA 59.605 41.667 0.00 0.00 0.00 2.10
18 19 3.191371 GGACCTCACGCATCAAATTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
19 20 3.501950 GGACCTCACGCATCAAATTTTC 58.498 45.455 0.00 0.00 0.00 2.29
20 21 2.095263 CGGACCTCACGCATCAAATTTT 60.095 45.455 0.00 0.00 0.00 1.82
21 22 1.468520 CGGACCTCACGCATCAAATTT 59.531 47.619 0.00 0.00 0.00 1.82
22 23 1.086696 CGGACCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
23 24 2.767536 CGGACCTCACGCATCAAAT 58.232 52.632 0.00 0.00 0.00 2.32
24 25 4.277239 CGGACCTCACGCATCAAA 57.723 55.556 0.00 0.00 0.00 2.69
31 32 1.156736 AAATTGAAGCGGACCTCACG 58.843 50.000 0.00 0.00 0.00 4.35
32 33 2.552315 TGAAAATTGAAGCGGACCTCAC 59.448 45.455 0.00 0.00 0.00 3.51
33 34 2.857483 TGAAAATTGAAGCGGACCTCA 58.143 42.857 0.00 0.00 0.00 3.86
34 35 3.915437 TTGAAAATTGAAGCGGACCTC 57.085 42.857 0.00 0.00 0.00 3.85
35 36 4.280677 TGATTTGAAAATTGAAGCGGACCT 59.719 37.500 0.00 0.00 0.00 3.85
36 37 4.555262 TGATTTGAAAATTGAAGCGGACC 58.445 39.130 0.00 0.00 0.00 4.46
37 38 6.710692 AATGATTTGAAAATTGAAGCGGAC 57.289 33.333 0.00 0.00 0.00 4.79
38 39 6.147492 CCAAATGATTTGAAAATTGAAGCGGA 59.853 34.615 18.82 0.00 43.26 5.54
39 40 6.147492 TCCAAATGATTTGAAAATTGAAGCGG 59.853 34.615 18.82 0.00 43.26 5.52
40 41 7.011189 GTCCAAATGATTTGAAAATTGAAGCG 58.989 34.615 18.82 0.00 43.26 4.68
41 42 7.863666 TGTCCAAATGATTTGAAAATTGAAGC 58.136 30.769 18.82 0.00 43.26 3.86
43 44 9.781633 AGATGTCCAAATGATTTGAAAATTGAA 57.218 25.926 18.82 0.07 43.26 2.69
44 45 9.210329 CAGATGTCCAAATGATTTGAAAATTGA 57.790 29.630 18.82 4.09 43.26 2.57
45 46 9.210329 TCAGATGTCCAAATGATTTGAAAATTG 57.790 29.630 18.82 9.76 43.26 2.32
46 47 9.431887 CTCAGATGTCCAAATGATTTGAAAATT 57.568 29.630 18.82 0.50 43.26 1.82
47 48 8.038944 CCTCAGATGTCCAAATGATTTGAAAAT 58.961 33.333 18.82 0.00 43.26 1.82
48 49 7.233144 TCCTCAGATGTCCAAATGATTTGAAAA 59.767 33.333 18.82 0.00 43.26 2.29
49 50 6.720748 TCCTCAGATGTCCAAATGATTTGAAA 59.279 34.615 18.82 4.37 43.26 2.69
50 51 6.247676 TCCTCAGATGTCCAAATGATTTGAA 58.752 36.000 18.82 0.00 43.26 2.69
51 52 5.818887 TCCTCAGATGTCCAAATGATTTGA 58.181 37.500 18.82 0.00 43.26 2.69
52 53 5.450137 GCTCCTCAGATGTCCAAATGATTTG 60.450 44.000 10.84 10.84 40.32 2.32
53 54 4.643784 GCTCCTCAGATGTCCAAATGATTT 59.356 41.667 0.00 0.00 0.00 2.17
54 55 4.079901 AGCTCCTCAGATGTCCAAATGATT 60.080 41.667 0.00 0.00 0.00 2.57
55 56 3.458857 AGCTCCTCAGATGTCCAAATGAT 59.541 43.478 0.00 0.00 0.00 2.45
56 57 2.842496 AGCTCCTCAGATGTCCAAATGA 59.158 45.455 0.00 0.00 0.00 2.57
57 58 3.118334 AGAGCTCCTCAGATGTCCAAATG 60.118 47.826 10.93 0.00 32.06 2.32
58 59 3.113824 AGAGCTCCTCAGATGTCCAAAT 58.886 45.455 10.93 0.00 32.06 2.32
59 60 2.499289 GAGAGCTCCTCAGATGTCCAAA 59.501 50.000 10.93 0.00 41.58 3.28
60 61 2.106566 GAGAGCTCCTCAGATGTCCAA 58.893 52.381 10.93 0.00 41.58 3.53
61 62 1.006400 TGAGAGCTCCTCAGATGTCCA 59.994 52.381 10.93 0.00 46.38 4.02
62 63 1.774110 TGAGAGCTCCTCAGATGTCC 58.226 55.000 10.93 0.00 46.38 4.02
88 89 9.912634 CATTTTTACATACCACTGAATTGTCTT 57.087 29.630 0.00 0.00 0.00 3.01
89 90 9.077885 ACATTTTTACATACCACTGAATTGTCT 57.922 29.630 0.00 0.00 0.00 3.41
90 91 9.691362 AACATTTTTACATACCACTGAATTGTC 57.309 29.630 0.00 0.00 0.00 3.18
96 97 9.344772 ACAGTAAACATTTTTACATACCACTGA 57.655 29.630 15.08 0.00 46.66 3.41
97 98 9.959749 AACAGTAAACATTTTTACATACCACTG 57.040 29.630 15.08 8.01 46.66 3.66
99 100 9.953697 TGAACAGTAAACATTTTTACATACCAC 57.046 29.630 15.08 4.33 46.66 4.16
113 114 9.632807 GCCAAAACAATATATGAACAGTAAACA 57.367 29.630 0.00 0.00 0.00 2.83
114 115 9.083080 GGCCAAAACAATATATGAACAGTAAAC 57.917 33.333 0.00 0.00 0.00 2.01
115 116 9.030452 AGGCCAAAACAATATATGAACAGTAAA 57.970 29.630 5.01 0.00 0.00 2.01
116 117 8.465999 CAGGCCAAAACAATATATGAACAGTAA 58.534 33.333 5.01 0.00 0.00 2.24
117 118 7.831690 TCAGGCCAAAACAATATATGAACAGTA 59.168 33.333 5.01 0.00 0.00 2.74
118 119 6.663093 TCAGGCCAAAACAATATATGAACAGT 59.337 34.615 5.01 0.00 0.00 3.55
119 120 7.099266 TCAGGCCAAAACAATATATGAACAG 57.901 36.000 5.01 0.00 0.00 3.16
120 121 7.658525 ATCAGGCCAAAACAATATATGAACA 57.341 32.000 5.01 0.00 0.00 3.18
121 122 8.819974 CAAATCAGGCCAAAACAATATATGAAC 58.180 33.333 5.01 0.00 0.00 3.18
122 123 8.538701 ACAAATCAGGCCAAAACAATATATGAA 58.461 29.630 5.01 0.00 0.00 2.57
123 124 8.076910 ACAAATCAGGCCAAAACAATATATGA 57.923 30.769 5.01 0.00 0.00 2.15
124 125 8.199449 AGACAAATCAGGCCAAAACAATATATG 58.801 33.333 5.01 0.00 0.00 1.78
125 126 8.310122 AGACAAATCAGGCCAAAACAATATAT 57.690 30.769 5.01 0.00 0.00 0.86
126 127 7.716799 AGACAAATCAGGCCAAAACAATATA 57.283 32.000 5.01 0.00 0.00 0.86
127 128 6.610075 AGACAAATCAGGCCAAAACAATAT 57.390 33.333 5.01 0.00 0.00 1.28
128 129 6.418057 AAGACAAATCAGGCCAAAACAATA 57.582 33.333 5.01 0.00 0.00 1.90
129 130 4.961438 AGACAAATCAGGCCAAAACAAT 57.039 36.364 5.01 0.00 0.00 2.71
130 131 4.751767 AAGACAAATCAGGCCAAAACAA 57.248 36.364 5.01 0.00 0.00 2.83
131 132 4.751767 AAAGACAAATCAGGCCAAAACA 57.248 36.364 5.01 0.00 0.00 2.83
160 161 0.822811 TGGACATCTGAGCAGCTCTC 59.177 55.000 23.15 11.57 42.23 3.20
161 162 1.273759 TTGGACATCTGAGCAGCTCT 58.726 50.000 23.15 2.04 0.00 4.09
162 163 2.105006 TTTGGACATCTGAGCAGCTC 57.895 50.000 16.21 16.21 0.00 4.09
163 164 2.026542 TCATTTGGACATCTGAGCAGCT 60.027 45.455 0.00 0.00 0.00 4.24
164 165 2.097142 GTCATTTGGACATCTGAGCAGC 59.903 50.000 0.00 0.00 46.19 5.25
178 179 5.348451 CCCGCTCCAAATTTTAAGTCATTTG 59.652 40.000 8.72 8.72 39.25 2.32
179 180 5.478407 CCCGCTCCAAATTTTAAGTCATTT 58.522 37.500 0.00 0.00 0.00 2.32
180 181 4.620567 GCCCGCTCCAAATTTTAAGTCATT 60.621 41.667 0.00 0.00 0.00 2.57
181 182 3.119137 GCCCGCTCCAAATTTTAAGTCAT 60.119 43.478 0.00 0.00 0.00 3.06
182 183 2.230266 GCCCGCTCCAAATTTTAAGTCA 59.770 45.455 0.00 0.00 0.00 3.41
183 184 2.416836 GGCCCGCTCCAAATTTTAAGTC 60.417 50.000 0.00 0.00 0.00 3.01
184 185 1.548719 GGCCCGCTCCAAATTTTAAGT 59.451 47.619 0.00 0.00 0.00 2.24
185 186 1.824852 AGGCCCGCTCCAAATTTTAAG 59.175 47.619 0.00 0.00 0.00 1.85
186 187 1.822371 GAGGCCCGCTCCAAATTTTAA 59.178 47.619 0.00 0.00 0.00 1.52
187 188 1.005450 AGAGGCCCGCTCCAAATTTTA 59.995 47.619 0.00 0.00 0.00 1.52
188 189 0.251787 AGAGGCCCGCTCCAAATTTT 60.252 50.000 0.00 0.00 0.00 1.82
189 190 0.681243 GAGAGGCCCGCTCCAAATTT 60.681 55.000 2.60 0.00 0.00 1.82
190 191 1.077429 GAGAGGCCCGCTCCAAATT 60.077 57.895 2.60 0.00 0.00 1.82
191 192 2.592308 GAGAGGCCCGCTCCAAAT 59.408 61.111 2.60 0.00 0.00 2.32
192 193 4.082523 CGAGAGGCCCGCTCCAAA 62.083 66.667 9.04 0.00 0.00 3.28
199 200 1.097547 AATTTGATGCGAGAGGCCCG 61.098 55.000 0.00 0.00 42.61 6.13
200 201 1.106285 AAATTTGATGCGAGAGGCCC 58.894 50.000 0.00 0.00 42.61 5.80
201 202 2.424956 AGAAAATTTGATGCGAGAGGCC 59.575 45.455 0.00 0.00 42.61 5.19
202 203 3.772060 AGAAAATTTGATGCGAGAGGC 57.228 42.857 0.00 0.00 43.96 4.70
203 204 4.260375 CGGTAGAAAATTTGATGCGAGAGG 60.260 45.833 0.00 0.00 0.00 3.69
204 205 4.783450 GCGGTAGAAAATTTGATGCGAGAG 60.783 45.833 0.00 0.00 0.00 3.20
205 206 3.063452 GCGGTAGAAAATTTGATGCGAGA 59.937 43.478 0.00 0.00 0.00 4.04
206 207 3.181511 TGCGGTAGAAAATTTGATGCGAG 60.182 43.478 0.00 0.00 0.00 5.03
207 208 2.744741 TGCGGTAGAAAATTTGATGCGA 59.255 40.909 0.00 0.00 0.00 5.10
208 209 2.845967 GTGCGGTAGAAAATTTGATGCG 59.154 45.455 0.00 0.00 0.00 4.73
209 210 3.832276 TGTGCGGTAGAAAATTTGATGC 58.168 40.909 0.00 0.00 0.00 3.91
210 211 6.761731 TTTTGTGCGGTAGAAAATTTGATG 57.238 33.333 0.00 0.00 0.00 3.07
276 277 4.265893 TCATATGCAGCCGGTTAGAAAAA 58.734 39.130 1.90 0.00 0.00 1.94
277 278 3.876914 CTCATATGCAGCCGGTTAGAAAA 59.123 43.478 1.90 0.00 0.00 2.29
278 279 3.466836 CTCATATGCAGCCGGTTAGAAA 58.533 45.455 1.90 0.00 0.00 2.52
279 280 2.806745 GCTCATATGCAGCCGGTTAGAA 60.807 50.000 1.90 0.00 0.00 2.10
280 281 1.270305 GCTCATATGCAGCCGGTTAGA 60.270 52.381 1.90 0.00 0.00 2.10
281 282 1.151668 GCTCATATGCAGCCGGTTAG 58.848 55.000 1.90 0.00 0.00 2.34
282 283 3.305709 GCTCATATGCAGCCGGTTA 57.694 52.632 1.90 0.00 0.00 2.85
283 284 4.147701 GCTCATATGCAGCCGGTT 57.852 55.556 1.90 0.00 0.00 4.44
288 289 0.035881 TGCCTAGGCTCATATGCAGC 59.964 55.000 33.07 14.95 42.51 5.25
289 290 1.610102 GGTGCCTAGGCTCATATGCAG 60.610 57.143 33.07 0.00 42.51 4.41
290 291 0.397941 GGTGCCTAGGCTCATATGCA 59.602 55.000 33.07 8.77 42.51 3.96
291 292 0.671781 CGGTGCCTAGGCTCATATGC 60.672 60.000 33.07 15.63 42.51 3.14
292 293 0.969149 TCGGTGCCTAGGCTCATATG 59.031 55.000 33.07 19.42 42.51 1.78
293 294 1.717032 TTCGGTGCCTAGGCTCATAT 58.283 50.000 33.07 0.00 42.51 1.78
294 295 1.138266 GTTTCGGTGCCTAGGCTCATA 59.862 52.381 33.07 18.41 42.51 2.15
295 296 0.107654 GTTTCGGTGCCTAGGCTCAT 60.108 55.000 33.07 0.00 42.51 2.90
296 297 1.295423 GTTTCGGTGCCTAGGCTCA 59.705 57.895 33.07 12.84 42.51 4.26
297 298 1.810030 CGTTTCGGTGCCTAGGCTC 60.810 63.158 33.07 28.77 42.51 4.70
298 299 2.264794 CGTTTCGGTGCCTAGGCT 59.735 61.111 33.07 0.00 42.51 4.58
299 300 3.497031 GCGTTTCGGTGCCTAGGC 61.497 66.667 27.71 27.71 42.35 3.93
305 306 1.329599 CTATAAAGGGCGTTTCGGTGC 59.670 52.381 8.64 0.00 0.00 5.01
306 307 1.329599 GCTATAAAGGGCGTTTCGGTG 59.670 52.381 8.64 0.34 0.00 4.94
307 308 1.660167 GCTATAAAGGGCGTTTCGGT 58.340 50.000 8.64 0.01 0.00 4.69
308 309 0.942252 GGCTATAAAGGGCGTTTCGG 59.058 55.000 8.64 2.34 0.00 4.30
309 310 1.658994 TGGCTATAAAGGGCGTTTCG 58.341 50.000 8.64 0.88 0.00 3.46
310 311 4.649088 AATTGGCTATAAAGGGCGTTTC 57.351 40.909 8.64 0.00 0.00 2.78
311 312 6.724893 AATAATTGGCTATAAAGGGCGTTT 57.275 33.333 10.30 10.30 0.00 3.60
312 313 9.695155 ATATAATAATTGGCTATAAAGGGCGTT 57.305 29.630 0.00 0.00 0.00 4.84
313 314 9.120538 CATATAATAATTGGCTATAAAGGGCGT 57.879 33.333 0.00 0.00 0.00 5.68
314 315 9.120538 ACATATAATAATTGGCTATAAAGGGCG 57.879 33.333 0.00 0.00 0.00 6.13
348 349 9.797642 TGCCATGTCATTTATAGTCAATCTAAT 57.202 29.630 0.00 0.00 31.94 1.73
349 350 9.625747 TTGCCATGTCATTTATAGTCAATCTAA 57.374 29.630 0.00 0.00 31.94 2.10
350 351 9.056005 GTTGCCATGTCATTTATAGTCAATCTA 57.944 33.333 0.00 0.00 0.00 1.98
351 352 7.776969 AGTTGCCATGTCATTTATAGTCAATCT 59.223 33.333 0.00 0.00 0.00 2.40
352 353 7.934457 AGTTGCCATGTCATTTATAGTCAATC 58.066 34.615 0.00 0.00 0.00 2.67
353 354 7.886629 AGTTGCCATGTCATTTATAGTCAAT 57.113 32.000 0.00 0.00 0.00 2.57
354 355 7.176515 ACAAGTTGCCATGTCATTTATAGTCAA 59.823 33.333 1.81 0.00 0.00 3.18
355 356 6.658816 ACAAGTTGCCATGTCATTTATAGTCA 59.341 34.615 1.81 0.00 0.00 3.41
356 357 7.088589 ACAAGTTGCCATGTCATTTATAGTC 57.911 36.000 1.81 0.00 0.00 2.59
357 358 7.466746 AACAAGTTGCCATGTCATTTATAGT 57.533 32.000 1.81 0.00 0.00 2.12
360 361 8.137437 GCTATAACAAGTTGCCATGTCATTTAT 58.863 33.333 1.81 0.00 0.00 1.40
361 362 7.416213 GGCTATAACAAGTTGCCATGTCATTTA 60.416 37.037 1.81 0.00 42.79 1.40
362 363 6.332630 GCTATAACAAGTTGCCATGTCATTT 58.667 36.000 1.81 0.00 0.00 2.32
363 364 5.163519 GGCTATAACAAGTTGCCATGTCATT 60.164 40.000 1.81 0.00 42.79 2.57
364 365 4.339247 GGCTATAACAAGTTGCCATGTCAT 59.661 41.667 1.81 0.00 42.79 3.06
365 366 3.694072 GGCTATAACAAGTTGCCATGTCA 59.306 43.478 1.81 0.00 42.79 3.58
366 367 4.292977 GGCTATAACAAGTTGCCATGTC 57.707 45.455 1.81 0.00 42.79 3.06
370 371 6.444002 AGTTGTTGGCTATAACAAGTTGCCA 61.444 40.000 10.37 10.37 46.56 4.92
371 372 4.022329 AGTTGTTGGCTATAACAAGTTGCC 60.022 41.667 10.65 5.99 46.56 4.52
372 373 4.917415 CAGTTGTTGGCTATAACAAGTTGC 59.083 41.667 10.65 6.01 46.56 4.17
373 374 5.460646 CCAGTTGTTGGCTATAACAAGTTG 58.539 41.667 10.65 0.00 46.56 3.16
374 375 5.705609 CCAGTTGTTGGCTATAACAAGTT 57.294 39.130 10.65 6.30 46.56 2.66
388 389 9.965824 GCATGTTTAATAATATAGCCAGTTGTT 57.034 29.630 0.00 0.00 0.00 2.83
389 390 9.354673 AGCATGTTTAATAATATAGCCAGTTGT 57.645 29.630 0.00 0.00 0.00 3.32
390 391 9.831737 GAGCATGTTTAATAATATAGCCAGTTG 57.168 33.333 0.00 0.00 0.00 3.16
391 392 9.573166 TGAGCATGTTTAATAATATAGCCAGTT 57.427 29.630 0.00 0.00 0.00 3.16
392 393 9.745018 ATGAGCATGTTTAATAATATAGCCAGT 57.255 29.630 0.00 0.00 0.00 4.00
401 402 9.618890 ACAGTGTCTATGAGCATGTTTAATAAT 57.381 29.630 0.00 0.00 0.00 1.28
403 404 9.529325 GTACAGTGTCTATGAGCATGTTTAATA 57.471 33.333 0.00 0.00 0.00 0.98
404 405 8.260818 AGTACAGTGTCTATGAGCATGTTTAAT 58.739 33.333 0.00 0.00 0.00 1.40
405 406 7.611770 AGTACAGTGTCTATGAGCATGTTTAA 58.388 34.615 0.00 0.00 0.00 1.52
406 407 7.170393 AGTACAGTGTCTATGAGCATGTTTA 57.830 36.000 0.00 0.00 0.00 2.01
407 408 6.042638 AGTACAGTGTCTATGAGCATGTTT 57.957 37.500 0.00 0.00 0.00 2.83
408 409 5.394663 GGAGTACAGTGTCTATGAGCATGTT 60.395 44.000 0.00 0.00 0.00 2.71
409 410 4.098654 GGAGTACAGTGTCTATGAGCATGT 59.901 45.833 0.00 0.00 0.00 3.21
410 411 4.500545 GGGAGTACAGTGTCTATGAGCATG 60.501 50.000 0.00 0.00 0.00 4.06
411 412 3.639094 GGGAGTACAGTGTCTATGAGCAT 59.361 47.826 0.00 0.00 0.00 3.79
412 413 3.024547 GGGAGTACAGTGTCTATGAGCA 58.975 50.000 0.00 0.00 0.00 4.26
413 414 3.292460 AGGGAGTACAGTGTCTATGAGC 58.708 50.000 0.00 0.00 0.00 4.26
414 415 3.886505 GGAGGGAGTACAGTGTCTATGAG 59.113 52.174 0.00 0.00 0.00 2.90
415 416 3.684697 CGGAGGGAGTACAGTGTCTATGA 60.685 52.174 0.00 0.00 0.00 2.15
416 417 2.619177 CGGAGGGAGTACAGTGTCTATG 59.381 54.545 0.00 0.00 0.00 2.23
417 418 2.241685 ACGGAGGGAGTACAGTGTCTAT 59.758 50.000 0.00 0.00 0.00 1.98
418 419 1.632409 ACGGAGGGAGTACAGTGTCTA 59.368 52.381 0.00 0.00 0.00 2.59
419 420 0.404812 ACGGAGGGAGTACAGTGTCT 59.595 55.000 0.00 0.00 0.00 3.41
420 421 0.810016 GACGGAGGGAGTACAGTGTC 59.190 60.000 0.00 0.00 0.00 3.67
421 422 0.611340 GGACGGAGGGAGTACAGTGT 60.611 60.000 0.00 0.00 0.00 3.55
422 423 1.654954 CGGACGGAGGGAGTACAGTG 61.655 65.000 0.00 0.00 0.00 3.66
423 424 1.378250 CGGACGGAGGGAGTACAGT 60.378 63.158 0.00 0.00 0.00 3.55
424 425 1.378250 ACGGACGGAGGGAGTACAG 60.378 63.158 0.00 0.00 0.00 2.74
425 426 1.676635 CACGGACGGAGGGAGTACA 60.677 63.158 0.00 0.00 0.00 2.90
426 427 0.962356 TTCACGGACGGAGGGAGTAC 60.962 60.000 0.00 0.00 0.00 2.73
427 428 0.033796 ATTCACGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 0.00 2.59
428 429 0.033796 TATTCACGGACGGAGGGAGT 60.034 55.000 0.00 0.00 0.00 3.85
429 430 1.067212 CTTATTCACGGACGGAGGGAG 59.933 57.143 0.00 0.00 0.00 4.30
430 431 1.108776 CTTATTCACGGACGGAGGGA 58.891 55.000 0.00 0.00 0.00 4.20
431 432 0.822164 ACTTATTCACGGACGGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
432 433 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
433 434 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
434 435 3.084039 AGTACACTTATTCACGGACGGA 58.916 45.455 0.00 0.00 0.00 4.69
435 436 3.498927 AGTACACTTATTCACGGACGG 57.501 47.619 0.00 0.00 0.00 4.79
436 437 4.730657 AGAAGTACACTTATTCACGGACG 58.269 43.478 0.00 0.00 36.11 4.79
437 438 7.311408 AGTTAGAAGTACACTTATTCACGGAC 58.689 38.462 0.00 0.00 36.11 4.79
438 439 7.458409 AGTTAGAAGTACACTTATTCACGGA 57.542 36.000 0.00 0.00 36.11 4.69
439 440 8.530269 AAAGTTAGAAGTACACTTATTCACGG 57.470 34.615 0.00 0.00 36.11 4.94
440 441 9.793245 CAAAAGTTAGAAGTACACTTATTCACG 57.207 33.333 0.00 0.00 36.11 4.35
471 472 9.508642 TTGGTCCAAAATTTAAAACTTTGACTT 57.491 25.926 19.92 0.00 32.87 3.01
472 473 8.941977 GTTGGTCCAAAATTTAAAACTTTGACT 58.058 29.630 19.92 0.00 32.87 3.41
473 474 8.941977 AGTTGGTCCAAAATTTAAAACTTTGAC 58.058 29.630 19.92 13.82 32.87 3.18
585 586 7.982354 GGAAAAAGTACTAGCATCTATCACACT 59.018 37.037 0.00 0.00 0.00 3.55
586 587 7.982354 AGGAAAAAGTACTAGCATCTATCACAC 59.018 37.037 0.00 0.00 0.00 3.82
587 588 8.079211 AGGAAAAAGTACTAGCATCTATCACA 57.921 34.615 0.00 0.00 0.00 3.58
596 597 9.444600 CCAACTTTATAGGAAAAAGTACTAGCA 57.555 33.333 0.00 0.00 44.35 3.49
597 598 9.445878 ACCAACTTTATAGGAAAAAGTACTAGC 57.554 33.333 0.00 0.00 44.35 3.42
600 601 9.856162 TTGACCAACTTTATAGGAAAAAGTACT 57.144 29.630 1.96 0.00 44.35 2.73
603 604 9.197306 ACTTTGACCAACTTTATAGGAAAAAGT 57.803 29.630 0.00 0.00 46.45 2.66
628 629 9.642327 TTTTGTCCTAGGTCAAAGTTTTAAAAC 57.358 29.630 26.12 21.06 35.40 2.43
629 630 9.863845 CTTTTGTCCTAGGTCAAAGTTTTAAAA 57.136 29.630 26.12 13.38 35.40 1.52
630 631 9.027202 ACTTTTGTCCTAGGTCAAAGTTTTAAA 57.973 29.630 26.12 13.94 35.40 1.52
631 632 8.584063 ACTTTTGTCCTAGGTCAAAGTTTTAA 57.416 30.769 26.12 14.49 35.40 1.52
632 633 8.584063 AACTTTTGTCCTAGGTCAAAGTTTTA 57.416 30.769 26.12 15.04 35.40 1.52
633 634 7.476540 AACTTTTGTCCTAGGTCAAAGTTTT 57.523 32.000 26.12 19.26 35.40 2.43
634 635 8.050930 TCTAACTTTTGTCCTAGGTCAAAGTTT 58.949 33.333 31.13 26.56 35.40 2.66
635 636 7.571025 TCTAACTTTTGTCCTAGGTCAAAGTT 58.429 34.615 30.01 30.01 35.40 2.66
636 637 7.133133 TCTAACTTTTGTCCTAGGTCAAAGT 57.867 36.000 26.12 23.23 35.40 2.66
637 638 7.715686 ACTTCTAACTTTTGTCCTAGGTCAAAG 59.284 37.037 26.12 22.74 35.40 2.77
638 639 7.571025 ACTTCTAACTTTTGTCCTAGGTCAAA 58.429 34.615 24.62 24.62 33.00 2.69
639 640 7.133133 ACTTCTAACTTTTGTCCTAGGTCAA 57.867 36.000 16.29 16.29 0.00 3.18
640 641 6.742559 ACTTCTAACTTTTGTCCTAGGTCA 57.257 37.500 9.08 6.65 0.00 4.02
641 642 7.598118 GTGTACTTCTAACTTTTGTCCTAGGTC 59.402 40.741 9.08 3.43 0.00 3.85
642 643 7.289549 AGTGTACTTCTAACTTTTGTCCTAGGT 59.710 37.037 9.08 0.00 0.00 3.08
643 644 7.668492 AGTGTACTTCTAACTTTTGTCCTAGG 58.332 38.462 0.82 0.82 0.00 3.02
650 651 9.793245 CGTGAATAAGTGTACTTCTAACTTTTG 57.207 33.333 0.00 0.00 37.40 2.44
651 652 8.985805 CCGTGAATAAGTGTACTTCTAACTTTT 58.014 33.333 0.00 0.00 37.40 2.27
652 653 8.362639 TCCGTGAATAAGTGTACTTCTAACTTT 58.637 33.333 0.00 0.00 37.40 2.66
653 654 7.811713 GTCCGTGAATAAGTGTACTTCTAACTT 59.188 37.037 0.00 0.00 37.40 2.66
654 655 7.311408 GTCCGTGAATAAGTGTACTTCTAACT 58.689 38.462 0.00 0.00 37.40 2.24
655 656 6.250104 CGTCCGTGAATAAGTGTACTTCTAAC 59.750 42.308 0.00 0.00 37.40 2.34
656 657 6.317088 CGTCCGTGAATAAGTGTACTTCTAA 58.683 40.000 0.00 0.00 37.40 2.10
657 658 5.163723 CCGTCCGTGAATAAGTGTACTTCTA 60.164 44.000 0.00 0.00 37.40 2.10
658 659 4.380233 CCGTCCGTGAATAAGTGTACTTCT 60.380 45.833 0.00 0.00 37.40 2.85
659 660 3.855950 CCGTCCGTGAATAAGTGTACTTC 59.144 47.826 0.00 0.00 37.40 3.01
660 661 3.507233 TCCGTCCGTGAATAAGTGTACTT 59.493 43.478 2.51 2.51 39.85 2.24
661 662 3.084039 TCCGTCCGTGAATAAGTGTACT 58.916 45.455 0.00 0.00 0.00 2.73
662 663 3.127548 TCTCCGTCCGTGAATAAGTGTAC 59.872 47.826 0.00 0.00 0.00 2.90
663 664 3.346315 TCTCCGTCCGTGAATAAGTGTA 58.654 45.455 0.00 0.00 0.00 2.90
664 665 2.163815 CTCTCCGTCCGTGAATAAGTGT 59.836 50.000 0.00 0.00 0.00 3.55
665 666 2.422479 TCTCTCCGTCCGTGAATAAGTG 59.578 50.000 0.00 0.00 0.00 3.16
666 667 2.683867 CTCTCTCCGTCCGTGAATAAGT 59.316 50.000 0.00 0.00 0.00 2.24
667 668 2.683867 ACTCTCTCCGTCCGTGAATAAG 59.316 50.000 0.00 0.00 0.00 1.73
668 669 2.719739 ACTCTCTCCGTCCGTGAATAA 58.280 47.619 0.00 0.00 0.00 1.40
669 670 2.414994 ACTCTCTCCGTCCGTGAATA 57.585 50.000 0.00 0.00 0.00 1.75
670 671 2.414994 TACTCTCTCCGTCCGTGAAT 57.585 50.000 0.00 0.00 0.00 2.57
671 672 2.014857 CATACTCTCTCCGTCCGTGAA 58.985 52.381 0.00 0.00 0.00 3.18
672 673 1.065636 ACATACTCTCTCCGTCCGTGA 60.066 52.381 0.00 0.00 0.00 4.35
673 674 1.064208 CACATACTCTCTCCGTCCGTG 59.936 57.143 0.00 0.00 0.00 4.94
674 675 1.065636 TCACATACTCTCTCCGTCCGT 60.066 52.381 0.00 0.00 0.00 4.69
675 676 1.331138 GTCACATACTCTCTCCGTCCG 59.669 57.143 0.00 0.00 0.00 4.79
676 677 2.356382 CTGTCACATACTCTCTCCGTCC 59.644 54.545 0.00 0.00 0.00 4.79
677 678 2.356382 CCTGTCACATACTCTCTCCGTC 59.644 54.545 0.00 0.00 0.00 4.79
678 679 2.026169 TCCTGTCACATACTCTCTCCGT 60.026 50.000 0.00 0.00 0.00 4.69
679 680 2.644676 TCCTGTCACATACTCTCTCCG 58.355 52.381 0.00 0.00 0.00 4.63
680 681 4.404073 ACAATCCTGTCACATACTCTCTCC 59.596 45.833 0.00 0.00 0.00 3.71
681 682 5.590530 ACAATCCTGTCACATACTCTCTC 57.409 43.478 0.00 0.00 0.00 3.20
682 683 8.768501 TTATACAATCCTGTCACATACTCTCT 57.231 34.615 0.00 0.00 36.96 3.10
683 684 9.988815 AATTATACAATCCTGTCACATACTCTC 57.011 33.333 0.00 0.00 36.96 3.20
684 685 9.770097 CAATTATACAATCCTGTCACATACTCT 57.230 33.333 0.00 0.00 36.96 3.24
685 686 9.764363 TCAATTATACAATCCTGTCACATACTC 57.236 33.333 0.00 0.00 36.96 2.59
727 728 9.787435 ACAACAATAAAGTAAGTCAAGATGGTA 57.213 29.630 0.00 0.00 0.00 3.25
728 729 8.691661 ACAACAATAAAGTAAGTCAAGATGGT 57.308 30.769 0.00 0.00 0.00 3.55
793 799 5.811613 TGCAGACACTTTCTTTTTCCAAATG 59.188 36.000 0.00 0.00 28.96 2.32
795 801 5.398603 TGCAGACACTTTCTTTTTCCAAA 57.601 34.783 0.00 0.00 28.96 3.28
828 843 8.911965 TGCTCTTCTGGATATGATATCTGTATC 58.088 37.037 11.85 14.98 37.75 2.24
829 844 8.835550 TGCTCTTCTGGATATGATATCTGTAT 57.164 34.615 11.85 2.91 0.00 2.29
830 845 8.835550 ATGCTCTTCTGGATATGATATCTGTA 57.164 34.615 11.85 0.00 0.00 2.74
831 846 7.736881 ATGCTCTTCTGGATATGATATCTGT 57.263 36.000 11.85 0.00 0.00 3.41
832 847 8.258708 TCAATGCTCTTCTGGATATGATATCTG 58.741 37.037 11.85 6.15 0.00 2.90
833 848 8.376803 TCAATGCTCTTCTGGATATGATATCT 57.623 34.615 11.85 0.00 0.00 1.98
834 849 9.616156 AATCAATGCTCTTCTGGATATGATATC 57.384 33.333 3.84 3.84 0.00 1.63
835 850 9.616156 GAATCAATGCTCTTCTGGATATGATAT 57.384 33.333 0.00 0.00 0.00 1.63
898 928 3.002791 GAGAAACTCAACGCATGGATCA 58.997 45.455 0.00 0.00 0.00 2.92
994 1064 2.276409 GGTGATGGCCATGGCAGA 59.724 61.111 36.56 23.38 42.43 4.26
1016 1086 2.795297 CGGCACCGTTGTTGTTGT 59.205 55.556 0.00 0.00 34.35 3.32
1175 1245 0.389817 CGTGACGACCATGGTGATGT 60.390 55.000 25.52 17.78 0.00 3.06
2397 2502 1.639298 GCAAGGCGACATGTGAGGTC 61.639 60.000 1.15 0.00 0.00 3.85
2405 2510 1.002868 AGCTTCAGCAAGGCGACAT 60.003 52.632 0.75 0.00 45.16 3.06
2584 2706 0.517316 CCTTGTTTAGCACGGCTGTC 59.483 55.000 0.00 0.00 40.10 3.51
2592 2714 2.265182 GCACGGCCCTTGTTTAGCA 61.265 57.895 0.00 0.00 0.00 3.49
2608 2730 5.521544 GTTAAACTGACCAAATTTACGGCA 58.478 37.500 0.00 0.00 0.00 5.69
2681 2805 1.208535 CACGCCCAACTCCTTATACCA 59.791 52.381 0.00 0.00 0.00 3.25
2829 2955 2.040544 GTCCATGGGGTGCAGTTCG 61.041 63.158 13.02 0.00 34.93 3.95
2831 2957 2.034066 CGTCCATGGGGTGCAGTT 59.966 61.111 13.02 0.00 34.93 3.16
2833 2959 4.720902 TGCGTCCATGGGGTGCAG 62.721 66.667 18.50 4.15 40.15 4.41
3156 3291 0.969904 CATATAAAATGCAGCGCGCG 59.030 50.000 28.44 28.44 46.97 6.86
3158 3293 3.251917 TGACATATAAAATGCAGCGCG 57.748 42.857 0.00 0.00 0.00 6.86
3159 3294 4.539870 ACATGACATATAAAATGCAGCGC 58.460 39.130 0.00 0.00 0.00 5.92
3160 3295 6.200808 TGAACATGACATATAAAATGCAGCG 58.799 36.000 0.00 0.00 0.00 5.18
3162 3297 8.484799 GCAATGAACATGACATATAAAATGCAG 58.515 33.333 0.00 0.00 29.88 4.41
3163 3298 7.980099 TGCAATGAACATGACATATAAAATGCA 59.020 29.630 18.30 18.30 34.17 3.96
3357 5351 2.350007 CGCTAAAAACTAGTTTGCCGCA 60.350 45.455 21.22 4.86 32.36 5.69
3389 5383 4.393155 ATCTCCAACAGCCGCGCA 62.393 61.111 8.75 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.