Multiple sequence alignment - TraesCS6D01G131600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G131600 chr6D 100.000 6255 0 0 1 6255 97928160 97921906 0.000000e+00 11551.0
1 TraesCS6D01G131600 chr6D 85.575 1227 88 37 3379 4540 461427023 461428225 0.000000e+00 1203.0
2 TraesCS6D01G131600 chr6D 84.375 224 31 2 6032 6255 151593790 151594009 3.800000e-52 217.0
3 TraesCS6D01G131600 chr6D 91.463 82 3 1 1731 1808 28941912 28941993 6.630000e-20 110.0
4 TraesCS6D01G131600 chr7D 97.109 1349 29 6 3216 4559 5478409 5477066 0.000000e+00 2266.0
5 TraesCS6D01G131600 chr3D 96.179 1387 43 8 3178 4560 580422668 580421288 0.000000e+00 2259.0
6 TraesCS6D01G131600 chr5D 95.954 1384 28 5 3178 4559 541995499 541996856 0.000000e+00 2220.0
7 TraesCS6D01G131600 chr6B 89.310 1768 110 27 4560 6251 182589342 182587578 0.000000e+00 2145.0
8 TraesCS6D01G131600 chr6B 93.661 1199 41 12 1802 2972 182590640 182589449 0.000000e+00 1760.0
9 TraesCS6D01G131600 chr6B 91.996 987 37 9 750 1734 182591579 182590633 0.000000e+00 1347.0
10 TraesCS6D01G131600 chr6B 83.114 1066 123 38 1875 2925 218218289 218219312 0.000000e+00 918.0
11 TraesCS6D01G131600 chr6B 94.009 217 9 4 532 746 182591826 182591612 6.050000e-85 326.0
12 TraesCS6D01G131600 chr6B 96.575 146 5 0 3032 3177 182589480 182589335 6.260000e-60 243.0
13 TraesCS6D01G131600 chr6B 87.248 149 7 9 344 480 182592001 182591853 6.490000e-35 159.0
14 TraesCS6D01G131600 chr6B 88.889 90 5 3 1730 1814 663679753 663679842 8.580000e-19 106.0
15 TraesCS6D01G131600 chr6B 89.286 84 5 1 1729 1808 663679836 663679753 1.110000e-17 102.0
16 TraesCS6D01G131600 chr6A 85.928 1471 108 48 3178 4559 29994740 29996200 0.000000e+00 1478.0
17 TraesCS6D01G131600 chr6A 84.153 1281 106 48 5031 6255 116943644 116942405 0.000000e+00 1151.0
18 TraesCS6D01G131600 chr6A 95.798 595 20 4 750 1343 116985200 116984610 0.000000e+00 955.0
19 TraesCS6D01G131600 chr6A 93.532 603 17 5 2597 3177 116946266 116945664 0.000000e+00 878.0
20 TraesCS6D01G131600 chr6A 96.264 455 15 2 2008 2460 116959501 116959047 0.000000e+00 745.0
21 TraesCS6D01G131600 chr6A 92.949 312 17 3 4703 5011 116945395 116945086 3.440000e-122 449.0
22 TraesCS6D01G131600 chr6A 91.613 310 16 3 1373 1681 116984534 116984234 2.700000e-113 420.0
23 TraesCS6D01G131600 chr6A 94.142 239 8 3 513 746 117002600 117002363 5.960000e-95 359.0
24 TraesCS6D01G131600 chr6A 95.714 210 9 0 1802 2011 116959813 116959604 7.770000e-89 339.0
25 TraesCS6D01G131600 chr6A 92.340 235 13 2 517 746 116985467 116985233 4.670000e-86 329.0
26 TraesCS6D01G131600 chr6A 95.484 155 7 0 4560 4714 116945671 116945517 1.350000e-61 248.0
27 TraesCS6D01G131600 chr6A 84.000 150 11 8 344 480 117002747 117002598 1.410000e-26 132.0
28 TraesCS6D01G131600 chr6A 83.784 148 9 10 344 477 116985616 116985470 6.580000e-25 126.0
29 TraesCS6D01G131600 chr6A 97.222 72 2 0 2442 2513 116957403 116957332 8.520000e-24 122.0
30 TraesCS6D01G131600 chr6A 90.476 84 3 3 2518 2596 116952824 116952741 8.580000e-19 106.0
31 TraesCS6D01G131600 chr4D 86.797 1333 75 38 3176 4449 28246948 28248238 0.000000e+00 1393.0
32 TraesCS6D01G131600 chr2A 87.001 1077 74 32 3539 4559 762675676 762674610 0.000000e+00 1153.0
33 TraesCS6D01G131600 chr2A 92.405 79 4 2 1729 1807 566850766 566850690 1.840000e-20 111.0
34 TraesCS6D01G131600 chr2A 90.123 81 6 2 1731 1811 566850690 566850768 3.080000e-18 104.0
35 TraesCS6D01G131600 chr1A 86.346 791 74 18 3390 4150 579025814 579026600 0.000000e+00 832.0
36 TraesCS6D01G131600 chr1A 85.421 439 28 16 4151 4560 579030140 579030571 2.080000e-114 424.0
37 TraesCS6D01G131600 chr7B 87.243 682 42 24 3708 4362 688051978 688052641 0.000000e+00 736.0
38 TraesCS6D01G131600 chr7B 87.288 118 10 3 4448 4561 688054917 688055033 5.090000e-26 130.0
39 TraesCS6D01G131600 chr7B 78.095 210 34 6 6030 6239 493367342 493367145 8.520000e-24 122.0
40 TraesCS6D01G131600 chr5A 77.670 206 43 3 6035 6240 631064973 631064771 8.520000e-24 122.0
41 TraesCS6D01G131600 chr7A 93.671 79 5 0 1731 1809 310433875 310433797 1.100000e-22 119.0
42 TraesCS6D01G131600 chr5B 76.961 204 35 11 3468 3665 45224055 45224252 8.580000e-19 106.0
43 TraesCS6D01G131600 chr1D 91.250 80 3 4 1731 1810 484414204 484414279 8.580000e-19 106.0
44 TraesCS6D01G131600 chr1D 89.024 82 4 1 1730 1811 366690333 366690257 5.160000e-16 97.1
45 TraesCS6D01G131600 chr4B 89.157 83 8 1 1729 1811 462210348 462210429 1.110000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G131600 chr6D 97921906 97928160 6254 True 11551.000000 11551 100.000000 1 6255 1 chr6D.!!$R1 6254
1 TraesCS6D01G131600 chr6D 461427023 461428225 1202 False 1203.000000 1203 85.575000 3379 4540 1 chr6D.!!$F3 1161
2 TraesCS6D01G131600 chr7D 5477066 5478409 1343 True 2266.000000 2266 97.109000 3216 4559 1 chr7D.!!$R1 1343
3 TraesCS6D01G131600 chr3D 580421288 580422668 1380 True 2259.000000 2259 96.179000 3178 4560 1 chr3D.!!$R1 1382
4 TraesCS6D01G131600 chr5D 541995499 541996856 1357 False 2220.000000 2220 95.954000 3178 4559 1 chr5D.!!$F1 1381
5 TraesCS6D01G131600 chr6B 182587578 182592001 4423 True 996.666667 2145 92.133167 344 6251 6 chr6B.!!$R2 5907
6 TraesCS6D01G131600 chr6B 218218289 218219312 1023 False 918.000000 918 83.114000 1875 2925 1 chr6B.!!$F1 1050
7 TraesCS6D01G131600 chr6A 29994740 29996200 1460 False 1478.000000 1478 85.928000 3178 4559 1 chr6A.!!$F1 1381
8 TraesCS6D01G131600 chr6A 116942405 116946266 3861 True 681.500000 1151 91.529500 2597 6255 4 chr6A.!!$R2 3658
9 TraesCS6D01G131600 chr6A 116984234 116985616 1382 True 457.500000 955 90.883750 344 1681 4 chr6A.!!$R4 1337
10 TraesCS6D01G131600 chr6A 116957332 116959813 2481 True 402.000000 745 96.400000 1802 2513 3 chr6A.!!$R3 711
11 TraesCS6D01G131600 chr4D 28246948 28248238 1290 False 1393.000000 1393 86.797000 3176 4449 1 chr4D.!!$F1 1273
12 TraesCS6D01G131600 chr2A 762674610 762675676 1066 True 1153.000000 1153 87.001000 3539 4559 1 chr2A.!!$R2 1020
13 TraesCS6D01G131600 chr1A 579025814 579030571 4757 False 628.000000 832 85.883500 3390 4560 2 chr1A.!!$F1 1170
14 TraesCS6D01G131600 chr7B 688051978 688055033 3055 False 433.000000 736 87.265500 3708 4561 2 chr7B.!!$F1 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.178990 AAGAAAACGGGCTGGCTCTT 60.179 50.0 0.00 0.00 0.0 2.85 F
1479 1605 0.032017 AGCACCCCTGTCCCTAGTAG 60.032 60.0 0.00 0.00 0.0 2.57 F
1483 1609 0.032017 CCCCTGTCCCTAGTAGTGCT 60.032 60.0 0.00 0.00 0.0 4.40 F
1693 1819 0.753867 GAGGGGTGAAGTAGGCTAGC 59.246 60.0 6.04 6.04 0.0 3.42 F
3526 5509 0.324943 ACTGGTCCCATTTCTCCACG 59.675 55.0 0.00 0.00 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1736 0.251073 AACCGTCTAAATGACCCCCG 59.749 55.000 0.0 0.0 42.49 5.73 R
3269 5214 0.038166 ATGCCCTGTCGGATTTGTGT 59.962 50.000 0.0 0.0 0.00 3.72 R
3522 5505 2.061773 CTCACTTGTGAAGCTACGTGG 58.938 52.381 0.0 0.0 0.00 4.94 R
3553 5536 4.506886 TTTGGCGGTATAAAACTTGGTG 57.493 40.909 0.0 0.0 0.00 4.17 R
5343 14731 0.166597 CACGCACAACAGCTACATGG 59.833 55.000 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.879759 TCCATCAACAGAAACGAAATATTAGAC 58.120 33.333 0.00 0.00 0.00 2.59
27 28 7.846107 CCATCAACAGAAACGAAATATTAGACG 59.154 37.037 0.00 7.66 0.00 4.18
28 29 8.592155 CATCAACAGAAACGAAATATTAGACGA 58.408 33.333 13.65 0.00 0.00 4.20
29 30 8.697846 TCAACAGAAACGAAATATTAGACGAT 57.302 30.769 13.65 2.86 0.00 3.73
30 31 9.146984 TCAACAGAAACGAAATATTAGACGATT 57.853 29.630 13.65 9.46 0.00 3.34
31 32 9.755064 CAACAGAAACGAAATATTAGACGATTT 57.245 29.630 13.65 10.62 0.00 2.17
73 74 8.824159 ATCATTGAATTCTACCTAGACATTCG 57.176 34.615 7.05 0.00 35.28 3.34
74 75 7.782049 TCATTGAATTCTACCTAGACATTCGT 58.218 34.615 7.05 0.00 35.28 3.85
75 76 7.706607 TCATTGAATTCTACCTAGACATTCGTG 59.293 37.037 7.05 10.44 35.28 4.35
76 77 5.902681 TGAATTCTACCTAGACATTCGTGG 58.097 41.667 7.05 0.00 35.28 4.94
77 78 4.939052 ATTCTACCTAGACATTCGTGGG 57.061 45.455 0.00 0.00 30.81 4.61
78 79 2.662866 TCTACCTAGACATTCGTGGGG 58.337 52.381 0.00 0.00 0.00 4.96
79 80 2.242965 TCTACCTAGACATTCGTGGGGA 59.757 50.000 0.00 0.00 0.00 4.81
80 81 2.176247 ACCTAGACATTCGTGGGGAT 57.824 50.000 0.00 0.00 0.00 3.85
81 82 2.478292 ACCTAGACATTCGTGGGGATT 58.522 47.619 0.00 0.00 0.00 3.01
82 83 2.844348 ACCTAGACATTCGTGGGGATTT 59.156 45.455 0.00 0.00 0.00 2.17
83 84 3.265995 ACCTAGACATTCGTGGGGATTTT 59.734 43.478 0.00 0.00 0.00 1.82
84 85 4.263771 ACCTAGACATTCGTGGGGATTTTT 60.264 41.667 0.00 0.00 0.00 1.94
135 136 9.739276 ATCAAATTGTGTAGGAGTTAGATTTGA 57.261 29.630 9.67 9.67 42.71 2.69
136 137 8.999431 TCAAATTGTGTAGGAGTTAGATTTGAC 58.001 33.333 0.00 0.00 37.35 3.18
137 138 9.003658 CAAATTGTGTAGGAGTTAGATTTGACT 57.996 33.333 0.00 0.00 36.07 3.41
138 139 9.574516 AAATTGTGTAGGAGTTAGATTTGACTT 57.425 29.630 0.00 0.00 0.00 3.01
139 140 9.574516 AATTGTGTAGGAGTTAGATTTGACTTT 57.425 29.630 0.00 0.00 0.00 2.66
140 141 7.962964 TGTGTAGGAGTTAGATTTGACTTTG 57.037 36.000 0.00 0.00 0.00 2.77
141 142 7.506114 TGTGTAGGAGTTAGATTTGACTTTGT 58.494 34.615 0.00 0.00 0.00 2.83
142 143 7.656137 TGTGTAGGAGTTAGATTTGACTTTGTC 59.344 37.037 0.00 0.00 0.00 3.18
143 144 7.873505 GTGTAGGAGTTAGATTTGACTTTGTCT 59.126 37.037 0.00 0.00 33.15 3.41
144 145 7.872993 TGTAGGAGTTAGATTTGACTTTGTCTG 59.127 37.037 0.00 0.00 33.15 3.51
145 146 6.831976 AGGAGTTAGATTTGACTTTGTCTGT 58.168 36.000 0.00 0.00 33.15 3.41
146 147 7.283329 AGGAGTTAGATTTGACTTTGTCTGTT 58.717 34.615 0.00 0.00 33.15 3.16
147 148 7.775561 AGGAGTTAGATTTGACTTTGTCTGTTT 59.224 33.333 0.00 0.00 33.15 2.83
148 149 8.406297 GGAGTTAGATTTGACTTTGTCTGTTTT 58.594 33.333 0.00 0.00 33.15 2.43
149 150 9.788960 GAGTTAGATTTGACTTTGTCTGTTTTT 57.211 29.630 0.00 0.00 33.15 1.94
150 151 9.788960 AGTTAGATTTGACTTTGTCTGTTTTTC 57.211 29.630 0.00 0.00 33.15 2.29
151 152 9.788960 GTTAGATTTGACTTTGTCTGTTTTTCT 57.211 29.630 0.00 0.00 33.15 2.52
154 155 9.710900 AGATTTGACTTTGTCTGTTTTTCTTTT 57.289 25.926 0.00 0.00 33.15 2.27
159 160 8.868916 TGACTTTGTCTGTTTTTCTTTTTATGC 58.131 29.630 0.00 0.00 33.15 3.14
160 161 8.770438 ACTTTGTCTGTTTTTCTTTTTATGCA 57.230 26.923 0.00 0.00 0.00 3.96
161 162 8.655970 ACTTTGTCTGTTTTTCTTTTTATGCAC 58.344 29.630 0.00 0.00 0.00 4.57
162 163 7.532682 TTGTCTGTTTTTCTTTTTATGCACC 57.467 32.000 0.00 0.00 0.00 5.01
163 164 5.746245 TGTCTGTTTTTCTTTTTATGCACCG 59.254 36.000 0.00 0.00 0.00 4.94
164 165 5.746721 GTCTGTTTTTCTTTTTATGCACCGT 59.253 36.000 0.00 0.00 0.00 4.83
165 166 6.254804 GTCTGTTTTTCTTTTTATGCACCGTT 59.745 34.615 0.00 0.00 0.00 4.44
166 167 6.254589 TCTGTTTTTCTTTTTATGCACCGTTG 59.745 34.615 0.00 0.00 0.00 4.10
167 168 6.100004 TGTTTTTCTTTTTATGCACCGTTGA 58.900 32.000 0.00 0.00 0.00 3.18
168 169 6.590292 TGTTTTTCTTTTTATGCACCGTTGAA 59.410 30.769 0.00 0.00 0.00 2.69
169 170 7.278868 TGTTTTTCTTTTTATGCACCGTTGAAT 59.721 29.630 0.00 0.00 0.00 2.57
170 171 6.761731 TTTCTTTTTATGCACCGTTGAATG 57.238 33.333 0.00 0.00 0.00 2.67
171 172 5.697473 TCTTTTTATGCACCGTTGAATGA 57.303 34.783 0.00 0.00 0.00 2.57
172 173 6.078202 TCTTTTTATGCACCGTTGAATGAA 57.922 33.333 0.00 0.00 0.00 2.57
173 174 5.918011 TCTTTTTATGCACCGTTGAATGAAC 59.082 36.000 0.00 0.00 0.00 3.18
238 239 3.313012 AAAATAAGAAAACGGGCTGGC 57.687 42.857 0.00 0.00 0.00 4.85
239 240 2.215942 AATAAGAAAACGGGCTGGCT 57.784 45.000 0.00 0.00 0.00 4.75
240 241 1.751437 ATAAGAAAACGGGCTGGCTC 58.249 50.000 0.00 0.00 0.00 4.70
241 242 0.690762 TAAGAAAACGGGCTGGCTCT 59.309 50.000 0.00 0.00 0.00 4.09
242 243 0.178990 AAGAAAACGGGCTGGCTCTT 60.179 50.000 0.00 0.00 0.00 2.85
243 244 0.606673 AGAAAACGGGCTGGCTCTTC 60.607 55.000 0.00 0.00 0.00 2.87
244 245 1.587043 GAAAACGGGCTGGCTCTTCC 61.587 60.000 0.00 0.00 0.00 3.46
245 246 3.569200 AAACGGGCTGGCTCTTCCC 62.569 63.158 0.00 0.00 36.68 3.97
247 248 2.764128 CGGGCTGGCTCTTCCCTA 60.764 66.667 0.00 0.00 37.89 3.53
248 249 2.911928 GGGCTGGCTCTTCCCTAC 59.088 66.667 0.00 0.00 37.08 3.18
249 250 2.501610 GGCTGGCTCTTCCCTACG 59.498 66.667 0.00 0.00 0.00 3.51
250 251 2.058595 GGCTGGCTCTTCCCTACGA 61.059 63.158 0.00 0.00 0.00 3.43
251 252 1.439644 GCTGGCTCTTCCCTACGAG 59.560 63.158 0.00 0.00 0.00 4.18
254 255 2.413765 GCTCTTCCCTACGAGCCG 59.586 66.667 0.00 0.00 45.21 5.52
255 256 3.121019 CTCTTCCCTACGAGCCGG 58.879 66.667 0.00 0.00 0.00 6.13
256 257 2.441532 TCTTCCCTACGAGCCGGG 60.442 66.667 2.18 0.00 42.05 5.73
257 258 4.222847 CTTCCCTACGAGCCGGGC 62.223 72.222 12.11 12.11 40.41 6.13
258 259 4.772231 TTCCCTACGAGCCGGGCT 62.772 66.667 24.13 24.13 43.88 5.19
272 273 2.930562 GGCTGCCCCTATCCGGAT 60.931 66.667 22.95 22.95 33.16 4.18
273 274 2.348998 GCTGCCCCTATCCGGATG 59.651 66.667 27.55 15.94 33.16 3.51
274 275 2.348998 CTGCCCCTATCCGGATGC 59.651 66.667 27.55 21.01 33.16 3.91
275 276 3.249189 TGCCCCTATCCGGATGCC 61.249 66.667 27.55 10.42 33.16 4.40
276 277 4.035102 GCCCCTATCCGGATGCCC 62.035 72.222 27.55 6.91 33.16 5.36
277 278 3.330720 CCCCTATCCGGATGCCCC 61.331 72.222 27.55 0.00 33.16 5.80
286 287 3.140814 GGATGCCCCGTTGCTTCC 61.141 66.667 11.05 11.05 44.99 3.46
287 288 2.044946 GATGCCCCGTTGCTTCCT 60.045 61.111 0.00 0.00 31.24 3.36
288 289 2.361610 ATGCCCCGTTGCTTCCTG 60.362 61.111 0.00 0.00 0.00 3.86
289 290 3.944250 ATGCCCCGTTGCTTCCTGG 62.944 63.158 0.00 0.00 0.00 4.45
291 292 4.351054 CCCCGTTGCTTCCTGGCT 62.351 66.667 0.00 0.00 0.00 4.75
292 293 3.058160 CCCGTTGCTTCCTGGCTG 61.058 66.667 0.00 0.00 0.00 4.85
293 294 3.058160 CCGTTGCTTCCTGGCTGG 61.058 66.667 3.65 3.65 37.10 4.85
294 295 3.058160 CGTTGCTTCCTGGCTGGG 61.058 66.667 10.79 0.45 36.20 4.45
295 296 3.376918 GTTGCTTCCTGGCTGGGC 61.377 66.667 10.79 7.58 36.20 5.36
309 310 4.348863 GGCTGGGCCTATATATGATCTG 57.651 50.000 4.53 0.00 46.69 2.90
310 311 3.072184 GGCTGGGCCTATATATGATCTGG 59.928 52.174 4.53 0.00 46.69 3.86
311 312 3.495806 GCTGGGCCTATATATGATCTGGC 60.496 52.174 4.53 0.00 39.61 4.85
315 316 3.983741 GCCTATATATGATCTGGCCGAC 58.016 50.000 0.00 0.00 34.81 4.79
316 317 3.243907 GCCTATATATGATCTGGCCGACC 60.244 52.174 0.00 0.00 34.81 4.79
317 318 4.219115 CCTATATATGATCTGGCCGACCT 58.781 47.826 0.00 0.00 36.63 3.85
318 319 4.279671 CCTATATATGATCTGGCCGACCTC 59.720 50.000 0.00 0.00 36.63 3.85
319 320 1.270907 ATATGATCTGGCCGACCTCC 58.729 55.000 0.00 0.00 36.63 4.30
320 321 0.832135 TATGATCTGGCCGACCTCCC 60.832 60.000 0.00 0.00 36.63 4.30
321 322 3.917760 GATCTGGCCGACCTCCCG 61.918 72.222 0.00 0.00 36.63 5.14
328 329 3.470888 CCGACCTCCCGCTGGAAT 61.471 66.667 0.00 0.00 41.17 3.01
329 330 2.107141 CGACCTCCCGCTGGAATC 59.893 66.667 0.00 0.00 41.17 2.52
330 331 2.107141 GACCTCCCGCTGGAATCG 59.893 66.667 0.00 0.00 41.17 3.34
331 332 3.447025 GACCTCCCGCTGGAATCGG 62.447 68.421 0.00 0.00 46.05 4.18
332 333 4.918201 CCTCCCGCTGGAATCGGC 62.918 72.222 0.00 0.00 45.19 5.54
333 334 4.918201 CTCCCGCTGGAATCGGCC 62.918 72.222 0.00 0.00 45.19 6.13
417 419 1.723870 GATCATCAACCAGGTGCGC 59.276 57.895 0.00 0.00 0.00 6.09
422 424 2.129555 ATCAACCAGGTGCGCCTCTT 62.130 55.000 18.11 7.95 44.97 2.85
425 427 4.785453 CCAGGTGCGCCTCTTCCC 62.785 72.222 18.11 0.00 44.97 3.97
429 431 2.815647 GTGCGCCTCTTCCCTTCG 60.816 66.667 4.18 0.00 0.00 3.79
437 439 2.190488 CTCTTCCCTTCGCTGCCCTT 62.190 60.000 0.00 0.00 0.00 3.95
439 441 3.605749 TTCCCTTCGCTGCCCTTCG 62.606 63.158 0.00 0.00 0.00 3.79
440 442 4.082523 CCCTTCGCTGCCCTTCGA 62.083 66.667 0.00 0.00 0.00 3.71
465 478 0.250989 CCGAGCACCCAAACCCTAAA 60.251 55.000 0.00 0.00 0.00 1.85
467 480 2.167662 CGAGCACCCAAACCCTAAATT 58.832 47.619 0.00 0.00 0.00 1.82
480 493 9.719355 CCAAACCCTAAATTAAGCTATTTTGTT 57.281 29.630 0.00 0.86 0.00 2.83
483 496 9.938280 AACCCTAAATTAAGCTATTTTGTTTCC 57.062 29.630 0.00 0.00 0.00 3.13
484 497 8.248253 ACCCTAAATTAAGCTATTTTGTTTCCG 58.752 33.333 0.00 0.00 0.00 4.30
485 498 7.704899 CCCTAAATTAAGCTATTTTGTTTCCGG 59.295 37.037 0.00 0.00 0.00 5.14
486 499 8.463607 CCTAAATTAAGCTATTTTGTTTCCGGA 58.536 33.333 0.00 0.00 0.00 5.14
490 503 9.965824 AATTAAGCTATTTTGTTTCCGGATATG 57.034 29.630 4.15 0.00 0.00 1.78
491 504 8.740123 TTAAGCTATTTTGTTTCCGGATATGA 57.260 30.769 4.15 0.00 0.00 2.15
492 505 6.619801 AGCTATTTTGTTTCCGGATATGAC 57.380 37.500 4.15 2.74 0.00 3.06
493 506 5.531287 AGCTATTTTGTTTCCGGATATGACC 59.469 40.000 4.15 0.00 0.00 4.02
494 507 5.278315 GCTATTTTGTTTCCGGATATGACCC 60.278 44.000 4.15 0.00 0.00 4.46
495 508 3.722908 TTTGTTTCCGGATATGACCCA 57.277 42.857 4.15 0.00 0.00 4.51
496 509 3.722908 TTGTTTCCGGATATGACCCAA 57.277 42.857 4.15 0.00 0.00 4.12
497 510 3.943671 TGTTTCCGGATATGACCCAAT 57.056 42.857 4.15 0.00 0.00 3.16
498 511 3.815809 TGTTTCCGGATATGACCCAATC 58.184 45.455 4.15 0.00 0.00 2.67
499 512 3.201045 TGTTTCCGGATATGACCCAATCA 59.799 43.478 4.15 0.00 43.13 2.57
500 513 3.485463 TTCCGGATATGACCCAATCAC 57.515 47.619 4.15 0.00 41.24 3.06
501 514 2.403561 TCCGGATATGACCCAATCACA 58.596 47.619 0.00 0.00 41.24 3.58
502 515 2.978978 TCCGGATATGACCCAATCACAT 59.021 45.455 0.00 0.00 41.24 3.21
503 516 3.076621 CCGGATATGACCCAATCACATG 58.923 50.000 0.00 0.00 41.24 3.21
504 517 2.485426 CGGATATGACCCAATCACATGC 59.515 50.000 0.00 0.00 41.24 4.06
505 518 3.489355 GGATATGACCCAATCACATGCA 58.511 45.455 0.00 0.00 41.24 3.96
506 519 4.084287 GGATATGACCCAATCACATGCAT 58.916 43.478 0.00 0.00 41.24 3.96
507 520 5.255687 GGATATGACCCAATCACATGCATA 58.744 41.667 0.00 0.00 41.24 3.14
508 521 5.889853 GGATATGACCCAATCACATGCATAT 59.110 40.000 0.00 0.00 41.24 1.78
509 522 6.183360 GGATATGACCCAATCACATGCATATG 60.183 42.308 0.00 0.00 41.24 1.78
697 722 1.876156 CTGGAGTTCTGAACCTTGTGC 59.124 52.381 16.48 4.69 0.00 4.57
748 803 7.430502 CGGCTAATGAAAATTCAGATTCAGAAC 59.569 37.037 1.98 0.00 41.08 3.01
901 956 5.532025 AAATAACGCTGCTTCAGTCTAAC 57.468 39.130 0.00 0.00 33.43 2.34
938 993 3.458163 GAGGGGTGGCGACGATCA 61.458 66.667 0.00 0.00 0.00 2.92
950 1005 1.714794 GACGATCACACAGGAAGGTG 58.285 55.000 0.00 0.00 44.35 4.00
960 1015 3.265791 CACAGGAAGGTGACATAAGAGC 58.734 50.000 0.00 0.00 41.32 4.09
1106 1162 9.965824 CTTTACTGTTAGTGAATCCACATTTTT 57.034 29.630 0.00 0.00 45.54 1.94
1155 1211 0.895559 TGCAGCAGTCTCGGAGAAGA 60.896 55.000 9.72 0.00 34.09 2.87
1331 1387 5.041191 TCCTCTTTCATTAGCATTCCCTC 57.959 43.478 0.00 0.00 0.00 4.30
1472 1598 2.142292 AATCACCAGCACCCCTGTCC 62.142 60.000 0.00 0.00 40.06 4.02
1473 1599 4.351054 CACCAGCACCCCTGTCCC 62.351 72.222 0.00 0.00 40.06 4.46
1474 1600 4.599500 ACCAGCACCCCTGTCCCT 62.599 66.667 0.00 0.00 40.06 4.20
1475 1601 2.285368 CCAGCACCCCTGTCCCTA 60.285 66.667 0.00 0.00 40.06 3.53
1476 1602 2.370445 CCAGCACCCCTGTCCCTAG 61.370 68.421 0.00 0.00 40.06 3.02
1477 1603 1.613630 CAGCACCCCTGTCCCTAGT 60.614 63.158 0.00 0.00 36.79 2.57
1478 1604 0.325296 CAGCACCCCTGTCCCTAGTA 60.325 60.000 0.00 0.00 36.79 1.82
1479 1605 0.032017 AGCACCCCTGTCCCTAGTAG 60.032 60.000 0.00 0.00 0.00 2.57
1480 1606 0.325390 GCACCCCTGTCCCTAGTAGT 60.325 60.000 0.00 0.00 0.00 2.73
1481 1607 1.486211 CACCCCTGTCCCTAGTAGTG 58.514 60.000 0.00 0.00 0.00 2.74
1482 1608 0.325390 ACCCCTGTCCCTAGTAGTGC 60.325 60.000 0.00 0.00 0.00 4.40
1483 1609 0.032017 CCCCTGTCCCTAGTAGTGCT 60.032 60.000 0.00 0.00 0.00 4.40
1484 1610 1.217183 CCCCTGTCCCTAGTAGTGCTA 59.783 57.143 0.00 0.00 0.00 3.49
1485 1611 2.158295 CCCCTGTCCCTAGTAGTGCTAT 60.158 54.545 0.00 0.00 0.00 2.97
1486 1612 3.075582 CCCCTGTCCCTAGTAGTGCTATA 59.924 52.174 0.00 0.00 0.00 1.31
1487 1613 4.080687 CCCTGTCCCTAGTAGTGCTATAC 58.919 52.174 0.00 0.00 0.00 1.47
1488 1614 4.080687 CCTGTCCCTAGTAGTGCTATACC 58.919 52.174 0.00 0.00 0.00 2.73
1489 1615 4.447325 CCTGTCCCTAGTAGTGCTATACCA 60.447 50.000 0.00 0.00 0.00 3.25
1490 1616 4.726583 TGTCCCTAGTAGTGCTATACCAG 58.273 47.826 0.00 0.00 0.00 4.00
1604 1730 1.178534 ACATCAGCAAAACCACCCCG 61.179 55.000 0.00 0.00 0.00 5.73
1606 1732 3.302344 CAGCAAAACCACCCCGGG 61.302 66.667 15.80 15.80 40.22 5.73
1607 1733 4.614036 AGCAAAACCACCCCGGGG 62.614 66.667 39.18 39.18 40.22 5.73
1692 1818 1.757699 GTGAGGGGTGAAGTAGGCTAG 59.242 57.143 0.00 0.00 0.00 3.42
1693 1819 0.753867 GAGGGGTGAAGTAGGCTAGC 59.246 60.000 6.04 6.04 0.00 3.42
1712 1838 6.363473 GCTAGCGCCAATAATACAAGTTTAG 58.637 40.000 2.29 0.00 0.00 1.85
1734 1861 4.707934 AGCTTTTCTAGGTGAGGAGTACTC 59.292 45.833 14.87 14.87 46.78 2.59
1735 1862 6.333203 AGCTTTTCTAGGTGAGGAGTACTCC 61.333 48.000 31.29 31.29 46.01 3.85
1736 1863 9.923739 TAGCTTTTCTAGGTGAGGAGTACTCCC 62.924 48.148 33.81 25.40 46.01 4.30
1906 2033 2.277084 GTATGTTCATGTGGACCGACC 58.723 52.381 0.00 0.00 39.54 4.79
1945 2072 2.221169 TGTTGCTCAGGTTGTCATCAC 58.779 47.619 0.00 0.00 0.00 3.06
2033 2266 5.960113 AGCTAATATCTCAGTGCTAATCGG 58.040 41.667 0.00 0.00 0.00 4.18
2035 2268 5.802956 GCTAATATCTCAGTGCTAATCGGTC 59.197 44.000 0.00 0.00 0.00 4.79
2349 2601 4.515191 GCTTCATTCAGTGGTGAGTTACAA 59.485 41.667 0.00 0.00 32.98 2.41
2381 2635 7.007367 CGCATTTACTGTGTCATGTTTGTATTC 59.993 37.037 0.00 0.00 0.00 1.75
2494 4412 1.217882 GGTTATTCTGACATCGGCGG 58.782 55.000 7.21 0.00 0.00 6.13
2513 4431 1.239347 GGCTTGGTCAGGAGTTCAAC 58.761 55.000 0.00 0.00 0.00 3.18
2570 4488 5.195940 TGGTCCATCCTCATCATTCTTTTC 58.804 41.667 0.00 0.00 37.07 2.29
2595 4516 5.302568 ACTGATTGCCTGTTCTTTCAAATCA 59.697 36.000 0.00 0.00 0.00 2.57
2613 4534 3.758755 TCATTGCTTGAGTCTCACTGT 57.241 42.857 0.78 0.00 0.00 3.55
2706 4627 2.909244 CACTACAACGTTGCTCTAGTCG 59.091 50.000 27.61 16.41 0.00 4.18
2945 4866 5.836024 AGGTGGAAGTAAATTGTACTCCA 57.164 39.130 0.00 0.00 0.00 3.86
2981 4924 6.591935 TCATGGATTAGGAATACTTGGTGAC 58.408 40.000 0.00 0.00 30.07 3.67
3001 4944 6.097839 GGTGACTAGGACATGGAGTACAATTA 59.902 42.308 0.00 0.00 31.45 1.40
3225 5170 2.946990 CCGGGGCGAAACTATAATTTGT 59.053 45.455 0.00 0.00 0.00 2.83
3324 5269 8.154203 TGAATATGGTTTCACTCACAACTCTTA 58.846 33.333 0.00 0.00 30.82 2.10
3522 5505 3.933861 ATACCACTGGTCCCATTTCTC 57.066 47.619 3.21 0.00 37.09 2.87
3526 5509 0.324943 ACTGGTCCCATTTCTCCACG 59.675 55.000 0.00 0.00 0.00 4.94
3553 5536 4.537135 TCACAAGTGAGTAGAATGGTCC 57.463 45.455 0.00 0.00 34.14 4.46
3580 5563 6.816140 CCAAGTTTTATACCGCCAAATTTCAT 59.184 34.615 0.00 0.00 0.00 2.57
3592 5575 7.014702 CCGCCAAATTTCATAATGTTTTGAAC 58.985 34.615 0.00 0.00 31.87 3.18
3854 5841 2.821991 AGGAGTAGGCGACATTATGC 57.178 50.000 0.00 0.00 0.00 3.14
4110 6137 2.834549 AGATCTGGTGGAGTTCGTTGAT 59.165 45.455 0.00 0.00 0.00 2.57
4151 6178 4.033776 GCACTGCCTGCCCTACCA 62.034 66.667 0.00 0.00 40.42 3.25
4152 6179 3.001514 CACTGCCTGCCCTACCAT 58.998 61.111 0.00 0.00 0.00 3.55
4153 6180 1.452651 CACTGCCTGCCCTACCATG 60.453 63.158 0.00 0.00 0.00 3.66
4154 6181 2.194056 CTGCCTGCCCTACCATGG 59.806 66.667 11.19 11.19 0.00 3.66
4155 6182 2.613696 TGCCTGCCCTACCATGGT 60.614 61.111 23.55 23.55 0.00 3.55
4156 6183 2.193248 GCCTGCCCTACCATGGTC 59.807 66.667 23.76 7.60 0.00 4.02
4157 6184 2.505982 CCTGCCCTACCATGGTCG 59.494 66.667 23.76 15.92 0.00 4.79
4158 6185 2.367202 CCTGCCCTACCATGGTCGT 61.367 63.158 23.76 0.00 0.00 4.34
4159 6186 1.144057 CTGCCCTACCATGGTCGTC 59.856 63.158 23.76 9.65 0.00 4.20
4160 6187 2.106332 GCCCTACCATGGTCGTCG 59.894 66.667 23.76 8.48 0.00 5.12
4161 6188 2.718073 GCCCTACCATGGTCGTCGT 61.718 63.158 23.76 0.00 0.00 4.34
4162 6189 1.436336 CCCTACCATGGTCGTCGTC 59.564 63.158 23.76 0.00 0.00 4.20
4429 12202 5.352284 CGTACAGGCTAACAGATCAAATCT 58.648 41.667 0.00 0.00 41.15 2.40
4460 12283 2.995872 GCTTCGTCCGCAGTCTCCT 61.996 63.158 0.00 0.00 0.00 3.69
4668 12499 3.979101 TCAGGTGCTTGTCATACATGA 57.021 42.857 0.00 0.00 33.38 3.07
4708 12672 6.483307 AGGTTTTAAGGGTGTTTACGTACTTC 59.517 38.462 0.00 0.00 0.00 3.01
4709 12673 6.354858 GTTTTAAGGGTGTTTACGTACTTCG 58.645 40.000 0.00 0.00 46.00 3.79
4780 12744 3.945921 AGTGAAGCATCATGAATGAGTGG 59.054 43.478 0.00 0.00 40.64 4.00
4783 12747 4.578928 TGAAGCATCATGAATGAGTGGATG 59.421 41.667 0.00 0.00 40.64 3.51
4836 12803 0.254178 CTGGCAGTAAGGCTGGTGAT 59.746 55.000 6.28 0.00 45.14 3.06
4870 12837 2.091885 AGTGGTGAGGCTTTCTGGAAAA 60.092 45.455 0.00 0.00 0.00 2.29
4917 12884 6.598064 GGCTAAACAGGTATGTGTTGTTATCT 59.402 38.462 0.00 0.00 39.82 1.98
4927 12894 9.811995 GGTATGTGTTGTTATCTGATACAGTTA 57.188 33.333 0.00 0.00 32.61 2.24
5242 14630 7.455008 GGATACATAGATGGGGAGAGAGTTTTA 59.545 40.741 0.00 0.00 0.00 1.52
5343 14731 3.726190 GCTGCTAGTCTTTGCGAATGTTC 60.726 47.826 0.00 0.00 0.00 3.18
5360 14748 1.135972 GTTCCATGTAGCTGTTGTGCG 60.136 52.381 0.00 0.00 38.13 5.34
5395 14783 0.036952 GCAGAGTGAGTGCAGCCTTA 60.037 55.000 0.00 0.00 40.86 2.69
5449 14837 6.761242 ACTGAATTCGTTTATACTAGCATGCA 59.239 34.615 21.98 5.01 0.00 3.96
5494 14900 2.076100 CATTAGAGCAACTCCAACGCA 58.924 47.619 0.00 0.00 0.00 5.24
5601 15017 2.586425 CATAACCCATTTCGAGCCCAT 58.414 47.619 0.00 0.00 0.00 4.00
5648 15064 3.195002 ATGGAATGGACGTGCGCG 61.195 61.111 19.78 19.78 44.93 6.86
5709 15126 0.033109 CTTTGACCATTCCCCCTCCC 60.033 60.000 0.00 0.00 0.00 4.30
5792 15218 3.813724 CCCAGGCCATCACCCTCC 61.814 72.222 5.01 0.00 0.00 4.30
5799 15225 1.386485 CCATCACCCTCCCCCAGAT 60.386 63.158 0.00 0.00 0.00 2.90
5804 15230 1.150135 TCACCCTCCCCCAGATATCTC 59.850 57.143 1.03 0.00 0.00 2.75
5814 15240 1.991070 CCAGATATCTCCCCCAGCAAT 59.009 52.381 1.03 0.00 0.00 3.56
5836 15262 4.308458 CGCACCCCTCGACAACCA 62.308 66.667 0.00 0.00 0.00 3.67
5843 15269 1.675552 CCCTCGACAACCAAACTTGT 58.324 50.000 0.00 0.00 37.06 3.16
5871 15297 4.530857 GGCCTATGCAGCCGACGT 62.531 66.667 0.00 0.00 41.41 4.34
5967 15396 2.442272 ACTATCGCCTCCACGCCT 60.442 61.111 0.00 0.00 0.00 5.52
5973 15402 3.775654 GCCTCCACGCCTACAGCT 61.776 66.667 0.00 0.00 40.39 4.24
5978 15408 1.218047 CCACGCCTACAGCTTGCTA 59.782 57.895 0.00 0.00 39.36 3.49
5979 15409 0.179073 CCACGCCTACAGCTTGCTAT 60.179 55.000 0.00 0.00 39.36 2.97
6090 15550 8.768957 TTTTCAACAACTTCATTTGTGATTCA 57.231 26.923 0.00 0.00 39.70 2.57
6139 15599 1.462731 GGTGGTTGCTGCATTGGTCA 61.463 55.000 1.84 0.00 0.00 4.02
6182 15654 1.076995 GGCCGATGTTTAGGGGCTT 60.077 57.895 0.54 0.00 44.91 4.35
6187 15659 2.158755 CCGATGTTTAGGGGCTTGATCT 60.159 50.000 0.00 0.00 0.00 2.75
6190 15662 2.184533 TGTTTAGGGGCTTGATCTCGA 58.815 47.619 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.879759 GTCTAATATTTCGTTTCTGTTGATGGA 58.120 33.333 0.00 0.00 0.00 3.41
1 2 7.846107 CGTCTAATATTTCGTTTCTGTTGATGG 59.154 37.037 0.00 0.00 0.00 3.51
2 3 8.592155 TCGTCTAATATTTCGTTTCTGTTGATG 58.408 33.333 0.00 0.00 0.00 3.07
4 5 8.697846 ATCGTCTAATATTTCGTTTCTGTTGA 57.302 30.769 0.00 0.00 0.00 3.18
5 6 9.755064 AAATCGTCTAATATTTCGTTTCTGTTG 57.245 29.630 0.00 0.00 0.00 3.33
47 48 9.914131 CGAATGTCTAGGTAGAATTCAATGATA 57.086 33.333 8.44 0.00 33.91 2.15
48 49 8.424918 ACGAATGTCTAGGTAGAATTCAATGAT 58.575 33.333 8.44 0.00 33.91 2.45
49 50 7.706607 CACGAATGTCTAGGTAGAATTCAATGA 59.293 37.037 8.44 0.00 33.91 2.57
50 51 7.042456 CCACGAATGTCTAGGTAGAATTCAATG 60.042 40.741 8.44 12.90 33.91 2.82
51 52 6.986817 CCACGAATGTCTAGGTAGAATTCAAT 59.013 38.462 8.44 0.00 33.91 2.57
52 53 6.338146 CCACGAATGTCTAGGTAGAATTCAA 58.662 40.000 8.44 0.00 33.91 2.69
53 54 5.163447 CCCACGAATGTCTAGGTAGAATTCA 60.163 44.000 8.44 0.00 33.91 2.57
54 55 5.290386 CCCACGAATGTCTAGGTAGAATTC 58.710 45.833 0.00 0.00 33.47 2.17
55 56 4.101119 CCCCACGAATGTCTAGGTAGAATT 59.899 45.833 0.00 0.00 33.47 2.17
56 57 3.641906 CCCCACGAATGTCTAGGTAGAAT 59.358 47.826 0.00 0.00 33.47 2.40
57 58 3.028850 CCCCACGAATGTCTAGGTAGAA 58.971 50.000 0.00 0.00 33.47 2.10
58 59 2.242965 TCCCCACGAATGTCTAGGTAGA 59.757 50.000 0.00 0.00 0.00 2.59
59 60 2.662866 TCCCCACGAATGTCTAGGTAG 58.337 52.381 0.00 0.00 0.00 3.18
60 61 2.832643 TCCCCACGAATGTCTAGGTA 57.167 50.000 0.00 0.00 0.00 3.08
61 62 2.176247 ATCCCCACGAATGTCTAGGT 57.824 50.000 0.00 0.00 0.00 3.08
62 63 3.560636 AAATCCCCACGAATGTCTAGG 57.439 47.619 0.00 0.00 0.00 3.02
109 110 9.739276 TCAAATCTAACTCCTACACAATTTGAT 57.261 29.630 2.79 0.00 37.11 2.57
110 111 8.999431 GTCAAATCTAACTCCTACACAATTTGA 58.001 33.333 2.79 0.00 38.71 2.69
111 112 9.003658 AGTCAAATCTAACTCCTACACAATTTG 57.996 33.333 0.00 0.00 35.32 2.32
112 113 9.574516 AAGTCAAATCTAACTCCTACACAATTT 57.425 29.630 0.00 0.00 0.00 1.82
113 114 9.574516 AAAGTCAAATCTAACTCCTACACAATT 57.425 29.630 0.00 0.00 0.00 2.32
114 115 9.003658 CAAAGTCAAATCTAACTCCTACACAAT 57.996 33.333 0.00 0.00 0.00 2.71
115 116 7.990886 ACAAAGTCAAATCTAACTCCTACACAA 59.009 33.333 0.00 0.00 0.00 3.33
116 117 7.506114 ACAAAGTCAAATCTAACTCCTACACA 58.494 34.615 0.00 0.00 0.00 3.72
117 118 7.873505 AGACAAAGTCAAATCTAACTCCTACAC 59.126 37.037 0.00 0.00 34.60 2.90
118 119 7.872993 CAGACAAAGTCAAATCTAACTCCTACA 59.127 37.037 0.00 0.00 34.60 2.74
119 120 7.873505 ACAGACAAAGTCAAATCTAACTCCTAC 59.126 37.037 0.00 0.00 34.60 3.18
120 121 7.963532 ACAGACAAAGTCAAATCTAACTCCTA 58.036 34.615 0.00 0.00 34.60 2.94
121 122 6.831976 ACAGACAAAGTCAAATCTAACTCCT 58.168 36.000 0.00 0.00 34.60 3.69
122 123 7.497925 AACAGACAAAGTCAAATCTAACTCC 57.502 36.000 0.00 0.00 34.60 3.85
123 124 9.788960 AAAAACAGACAAAGTCAAATCTAACTC 57.211 29.630 0.00 0.00 34.60 3.01
124 125 9.788960 GAAAAACAGACAAAGTCAAATCTAACT 57.211 29.630 0.00 0.00 34.60 2.24
125 126 9.788960 AGAAAAACAGACAAAGTCAAATCTAAC 57.211 29.630 0.00 0.00 34.60 2.34
128 129 9.710900 AAAAGAAAAACAGACAAAGTCAAATCT 57.289 25.926 0.00 0.00 34.60 2.40
133 134 8.868916 GCATAAAAAGAAAAACAGACAAAGTCA 58.131 29.630 0.00 0.00 34.60 3.41
134 135 8.868916 TGCATAAAAAGAAAAACAGACAAAGTC 58.131 29.630 0.00 0.00 0.00 3.01
135 136 8.655970 GTGCATAAAAAGAAAAACAGACAAAGT 58.344 29.630 0.00 0.00 0.00 2.66
136 137 8.116136 GGTGCATAAAAAGAAAAACAGACAAAG 58.884 33.333 0.00 0.00 0.00 2.77
137 138 7.201478 CGGTGCATAAAAAGAAAAACAGACAAA 60.201 33.333 0.00 0.00 0.00 2.83
138 139 6.254589 CGGTGCATAAAAAGAAAAACAGACAA 59.745 34.615 0.00 0.00 0.00 3.18
139 140 5.746245 CGGTGCATAAAAAGAAAAACAGACA 59.254 36.000 0.00 0.00 0.00 3.41
140 141 5.746721 ACGGTGCATAAAAAGAAAAACAGAC 59.253 36.000 0.00 0.00 0.00 3.51
141 142 5.897050 ACGGTGCATAAAAAGAAAAACAGA 58.103 33.333 0.00 0.00 0.00 3.41
142 143 6.254589 TCAACGGTGCATAAAAAGAAAAACAG 59.745 34.615 0.00 0.00 0.00 3.16
143 144 6.100004 TCAACGGTGCATAAAAAGAAAAACA 58.900 32.000 0.00 0.00 0.00 2.83
144 145 6.576551 TCAACGGTGCATAAAAAGAAAAAC 57.423 33.333 0.00 0.00 0.00 2.43
145 146 7.492669 TCATTCAACGGTGCATAAAAAGAAAAA 59.507 29.630 0.00 0.00 0.00 1.94
146 147 6.980978 TCATTCAACGGTGCATAAAAAGAAAA 59.019 30.769 0.00 0.00 0.00 2.29
147 148 6.507900 TCATTCAACGGTGCATAAAAAGAAA 58.492 32.000 0.00 0.00 0.00 2.52
148 149 6.078202 TCATTCAACGGTGCATAAAAAGAA 57.922 33.333 0.00 0.00 0.00 2.52
149 150 5.697473 TCATTCAACGGTGCATAAAAAGA 57.303 34.783 0.00 0.00 0.00 2.52
150 151 6.139672 GTTCATTCAACGGTGCATAAAAAG 57.860 37.500 0.00 0.00 0.00 2.27
217 218 3.323691 AGCCAGCCCGTTTTCTTATTTTT 59.676 39.130 0.00 0.00 0.00 1.94
218 219 2.897326 AGCCAGCCCGTTTTCTTATTTT 59.103 40.909 0.00 0.00 0.00 1.82
219 220 2.492088 GAGCCAGCCCGTTTTCTTATTT 59.508 45.455 0.00 0.00 0.00 1.40
220 221 2.092323 GAGCCAGCCCGTTTTCTTATT 58.908 47.619 0.00 0.00 0.00 1.40
221 222 1.282157 AGAGCCAGCCCGTTTTCTTAT 59.718 47.619 0.00 0.00 0.00 1.73
222 223 0.690762 AGAGCCAGCCCGTTTTCTTA 59.309 50.000 0.00 0.00 0.00 2.10
223 224 0.178990 AAGAGCCAGCCCGTTTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
224 225 0.606673 GAAGAGCCAGCCCGTTTTCT 60.607 55.000 0.00 0.00 0.00 2.52
225 226 1.587043 GGAAGAGCCAGCCCGTTTTC 61.587 60.000 0.00 0.00 36.34 2.29
226 227 1.603739 GGAAGAGCCAGCCCGTTTT 60.604 57.895 0.00 0.00 36.34 2.43
227 228 2.034221 GGAAGAGCCAGCCCGTTT 59.966 61.111 0.00 0.00 36.34 3.60
228 229 4.035102 GGGAAGAGCCAGCCCGTT 62.035 66.667 0.00 0.00 38.95 4.44
229 230 3.618855 TAGGGAAGAGCCAGCCCGT 62.619 63.158 0.00 0.00 46.68 5.28
230 231 2.764128 TAGGGAAGAGCCAGCCCG 60.764 66.667 0.00 0.00 46.68 6.13
231 232 2.911928 GTAGGGAAGAGCCAGCCC 59.088 66.667 0.00 0.00 42.37 5.19
232 233 2.022240 CTCGTAGGGAAGAGCCAGCC 62.022 65.000 0.00 0.00 38.95 4.85
233 234 1.439644 CTCGTAGGGAAGAGCCAGC 59.560 63.158 0.00 0.00 38.95 4.85
238 239 3.121019 CCGGCTCGTAGGGAAGAG 58.879 66.667 0.00 0.00 37.54 2.85
255 256 2.930562 ATCCGGATAGGGGCAGCC 60.931 66.667 17.43 1.26 41.52 4.85
256 257 2.348998 CATCCGGATAGGGGCAGC 59.651 66.667 18.63 0.00 41.52 5.25
257 258 2.348998 GCATCCGGATAGGGGCAG 59.651 66.667 18.63 3.75 41.52 4.85
258 259 3.249189 GGCATCCGGATAGGGGCA 61.249 66.667 18.63 0.00 40.79 5.36
259 260 4.035102 GGGCATCCGGATAGGGGC 62.035 72.222 18.63 17.07 41.52 5.80
260 261 3.330720 GGGGCATCCGGATAGGGG 61.331 72.222 18.63 5.82 41.52 4.79
269 270 3.140814 GGAAGCAACGGGGCATCC 61.141 66.667 8.70 8.70 43.47 3.51
270 271 2.044946 AGGAAGCAACGGGGCATC 60.045 61.111 3.39 0.65 35.83 3.91
271 272 2.361610 CAGGAAGCAACGGGGCAT 60.362 61.111 3.39 0.00 35.83 4.40
272 273 4.659172 CCAGGAAGCAACGGGGCA 62.659 66.667 3.39 0.00 35.83 5.36
274 275 4.351054 AGCCAGGAAGCAACGGGG 62.351 66.667 0.00 0.00 34.23 5.73
275 276 3.058160 CAGCCAGGAAGCAACGGG 61.058 66.667 0.00 0.00 34.23 5.28
276 277 3.058160 CCAGCCAGGAAGCAACGG 61.058 66.667 0.00 0.00 41.22 4.44
277 278 3.058160 CCCAGCCAGGAAGCAACG 61.058 66.667 0.00 0.00 41.22 4.10
278 279 3.376918 GCCCAGCCAGGAAGCAAC 61.377 66.667 0.00 0.00 41.22 4.17
289 290 3.495806 GCCAGATCATATATAGGCCCAGC 60.496 52.174 0.00 0.00 36.17 4.85
290 291 4.348863 GCCAGATCATATATAGGCCCAG 57.651 50.000 0.00 0.00 36.17 4.45
294 295 3.243907 GGTCGGCCAGATCATATATAGGC 60.244 52.174 0.00 0.00 41.29 3.93
295 296 4.219115 AGGTCGGCCAGATCATATATAGG 58.781 47.826 9.71 0.00 37.19 2.57
296 297 4.279671 GGAGGTCGGCCAGATCATATATAG 59.720 50.000 9.71 0.00 37.19 1.31
297 298 4.215908 GGAGGTCGGCCAGATCATATATA 58.784 47.826 9.71 0.00 37.19 0.86
298 299 3.034635 GGAGGTCGGCCAGATCATATAT 58.965 50.000 9.71 0.00 37.19 0.86
299 300 2.457598 GGAGGTCGGCCAGATCATATA 58.542 52.381 9.71 0.00 37.19 0.86
300 301 1.270907 GGAGGTCGGCCAGATCATAT 58.729 55.000 9.71 0.00 37.19 1.78
301 302 0.832135 GGGAGGTCGGCCAGATCATA 60.832 60.000 9.71 0.00 37.19 2.15
302 303 2.143419 GGGAGGTCGGCCAGATCAT 61.143 63.158 9.71 0.00 37.19 2.45
303 304 2.764128 GGGAGGTCGGCCAGATCA 60.764 66.667 9.71 0.00 37.19 2.92
304 305 3.917760 CGGGAGGTCGGCCAGATC 61.918 72.222 9.71 1.00 37.19 2.75
311 312 3.447025 GATTCCAGCGGGAGGTCGG 62.447 68.421 5.52 0.00 46.01 4.79
312 313 2.107141 GATTCCAGCGGGAGGTCG 59.893 66.667 5.52 0.00 46.01 4.79
313 314 2.107141 CGATTCCAGCGGGAGGTC 59.893 66.667 5.52 7.87 46.01 3.85
314 315 3.470888 CCGATTCCAGCGGGAGGT 61.471 66.667 5.52 0.00 46.01 3.85
330 331 1.389609 TTCTATCGAGGTCGGTGGCC 61.390 60.000 0.00 0.00 40.29 5.36
331 332 0.248949 GTTCTATCGAGGTCGGTGGC 60.249 60.000 0.00 0.00 40.29 5.01
332 333 1.065701 CTGTTCTATCGAGGTCGGTGG 59.934 57.143 0.00 0.00 40.29 4.61
333 334 1.534175 GCTGTTCTATCGAGGTCGGTG 60.534 57.143 0.00 0.00 40.29 4.94
334 335 0.739561 GCTGTTCTATCGAGGTCGGT 59.260 55.000 0.00 0.00 40.29 4.69
335 336 1.025812 AGCTGTTCTATCGAGGTCGG 58.974 55.000 0.00 0.00 40.29 4.79
336 337 1.268794 CCAGCTGTTCTATCGAGGTCG 60.269 57.143 13.81 0.00 41.45 4.79
337 338 1.067821 CCCAGCTGTTCTATCGAGGTC 59.932 57.143 13.81 0.00 0.00 3.85
338 339 1.115467 CCCAGCTGTTCTATCGAGGT 58.885 55.000 13.81 0.00 0.00 3.85
339 340 0.249657 GCCCAGCTGTTCTATCGAGG 60.250 60.000 13.81 4.18 0.00 4.63
340 341 0.596083 CGCCCAGCTGTTCTATCGAG 60.596 60.000 13.81 0.00 0.00 4.04
341 342 1.035385 TCGCCCAGCTGTTCTATCGA 61.035 55.000 13.81 8.75 0.00 3.59
342 343 0.596083 CTCGCCCAGCTGTTCTATCG 60.596 60.000 13.81 6.57 0.00 2.92
417 419 2.124942 GGCAGCGAAGGGAAGAGG 60.125 66.667 0.00 0.00 0.00 3.69
422 424 4.082523 CGAAGGGCAGCGAAGGGA 62.083 66.667 0.00 0.00 0.00 4.20
425 427 1.651987 TTTATCGAAGGGCAGCGAAG 58.348 50.000 0.00 0.00 40.20 3.79
429 431 0.377203 CGGTTTTATCGAAGGGCAGC 59.623 55.000 0.00 0.00 0.00 5.25
437 439 0.609151 TGGGTGCTCGGTTTTATCGA 59.391 50.000 0.00 0.00 35.24 3.59
439 441 2.094906 GGTTTGGGTGCTCGGTTTTATC 60.095 50.000 0.00 0.00 0.00 1.75
440 442 1.890489 GGTTTGGGTGCTCGGTTTTAT 59.110 47.619 0.00 0.00 0.00 1.40
465 478 9.349713 TCATATCCGGAAACAAAATAGCTTAAT 57.650 29.630 9.01 0.00 0.00 1.40
467 480 7.227910 GGTCATATCCGGAAACAAAATAGCTTA 59.772 37.037 9.01 0.00 0.00 3.09
480 493 2.774809 TGTGATTGGGTCATATCCGGAA 59.225 45.455 9.01 0.00 39.48 4.30
481 494 2.403561 TGTGATTGGGTCATATCCGGA 58.596 47.619 6.61 6.61 39.48 5.14
482 495 2.928801 TGTGATTGGGTCATATCCGG 57.071 50.000 0.00 0.00 39.48 5.14
483 496 2.485426 GCATGTGATTGGGTCATATCCG 59.515 50.000 0.00 0.00 36.64 4.18
484 497 3.489355 TGCATGTGATTGGGTCATATCC 58.511 45.455 0.00 0.00 36.64 2.59
485 498 6.376299 ACATATGCATGTGATTGGGTCATATC 59.624 38.462 27.77 0.00 43.89 1.63
486 499 6.250711 ACATATGCATGTGATTGGGTCATAT 58.749 36.000 27.77 0.00 43.89 1.78
487 500 5.633117 ACATATGCATGTGATTGGGTCATA 58.367 37.500 27.77 0.00 43.89 2.15
488 501 4.476297 ACATATGCATGTGATTGGGTCAT 58.524 39.130 27.77 1.22 43.89 3.06
489 502 3.900971 ACATATGCATGTGATTGGGTCA 58.099 40.909 27.77 0.00 43.89 4.02
499 512 5.175127 TCGAAGTTACACACATATGCATGT 58.825 37.500 10.16 14.82 46.58 3.21
500 513 5.717038 TCGAAGTTACACACATATGCATG 57.283 39.130 10.16 3.91 38.21 4.06
501 514 6.925610 AATCGAAGTTACACACATATGCAT 57.074 33.333 3.79 3.79 0.00 3.96
502 515 6.735678 AAATCGAAGTTACACACATATGCA 57.264 33.333 1.58 0.00 0.00 3.96
503 516 7.426456 CAGAAAATCGAAGTTACACACATATGC 59.574 37.037 1.58 0.00 0.00 3.14
504 517 7.426456 GCAGAAAATCGAAGTTACACACATATG 59.574 37.037 0.00 0.00 0.00 1.78
505 518 7.119116 TGCAGAAAATCGAAGTTACACACATAT 59.881 33.333 0.00 0.00 0.00 1.78
506 519 6.425417 TGCAGAAAATCGAAGTTACACACATA 59.575 34.615 0.00 0.00 0.00 2.29
507 520 5.238432 TGCAGAAAATCGAAGTTACACACAT 59.762 36.000 0.00 0.00 0.00 3.21
508 521 4.572795 TGCAGAAAATCGAAGTTACACACA 59.427 37.500 0.00 0.00 0.00 3.72
509 522 5.090652 TGCAGAAAATCGAAGTTACACAC 57.909 39.130 0.00 0.00 0.00 3.82
510 523 5.743026 TTGCAGAAAATCGAAGTTACACA 57.257 34.783 0.00 0.00 0.00 3.72
511 524 7.444558 TTTTTGCAGAAAATCGAAGTTACAC 57.555 32.000 0.00 0.00 31.07 2.90
537 550 3.942748 TGAAGCCCCAAACATCGTATAAC 59.057 43.478 0.00 0.00 0.00 1.89
538 551 4.223556 TGAAGCCCCAAACATCGTATAA 57.776 40.909 0.00 0.00 0.00 0.98
539 552 3.916359 TGAAGCCCCAAACATCGTATA 57.084 42.857 0.00 0.00 0.00 1.47
543 556 0.243636 GGTTGAAGCCCCAAACATCG 59.756 55.000 0.00 0.00 34.07 3.84
604 628 4.109766 GGCAAAACGCTAACTTTGAAAGT 58.890 39.130 4.45 4.45 41.91 2.66
764 819 1.216930 ACTTAGCCCCAAACACCAACT 59.783 47.619 0.00 0.00 0.00 3.16
885 940 3.494626 TCTTTTGTTAGACTGAAGCAGCG 59.505 43.478 0.00 0.00 34.37 5.18
901 956 5.353678 CCCTCTTAGTCTTGCTCATCTTTTG 59.646 44.000 0.00 0.00 0.00 2.44
938 993 3.307059 GCTCTTATGTCACCTTCCTGTGT 60.307 47.826 0.00 0.00 37.51 3.72
950 1005 2.857152 CAAGCTCGTCTGCTCTTATGTC 59.143 50.000 0.00 0.00 43.24 3.06
960 1015 4.033358 CCTTTACTATTGCAAGCTCGTCTG 59.967 45.833 4.94 0.00 0.00 3.51
1155 1211 1.913419 TCCCCTCTTACTTTTCCGCAT 59.087 47.619 0.00 0.00 0.00 4.73
1331 1387 8.393366 ACATGTTATCTCTTGACAAATCAATCG 58.607 33.333 0.00 0.00 43.92 3.34
1482 1608 5.048364 GTCTCCTACATGACAGCTGGTATAG 60.048 48.000 19.93 11.43 33.75 1.31
1483 1609 4.827835 GTCTCCTACATGACAGCTGGTATA 59.172 45.833 19.93 1.03 33.75 1.47
1484 1610 3.639094 GTCTCCTACATGACAGCTGGTAT 59.361 47.826 19.93 8.93 33.75 2.73
1485 1611 3.024547 GTCTCCTACATGACAGCTGGTA 58.975 50.000 19.93 9.39 33.75 3.25
1486 1612 1.827969 GTCTCCTACATGACAGCTGGT 59.172 52.381 19.93 8.65 33.75 4.00
1487 1613 1.137872 GGTCTCCTACATGACAGCTGG 59.862 57.143 19.93 1.96 35.11 4.85
1488 1614 1.137872 GGGTCTCCTACATGACAGCTG 59.862 57.143 13.48 13.48 35.11 4.24
1489 1615 1.007721 AGGGTCTCCTACATGACAGCT 59.992 52.381 0.00 0.00 42.75 4.24
1490 1616 1.137872 CAGGGTCTCCTACATGACAGC 59.862 57.143 0.00 0.00 42.67 4.40
1491 1617 2.428890 GTCAGGGTCTCCTACATGACAG 59.571 54.545 0.00 0.00 42.67 3.51
1492 1618 2.457598 GTCAGGGTCTCCTACATGACA 58.542 52.381 0.00 0.00 42.67 3.58
1493 1619 1.757699 GGTCAGGGTCTCCTACATGAC 59.242 57.143 0.00 0.00 42.67 3.06
1494 1620 1.685180 CGGTCAGGGTCTCCTACATGA 60.685 57.143 0.00 0.00 42.67 3.07
1495 1621 0.747255 CGGTCAGGGTCTCCTACATG 59.253 60.000 0.00 0.00 42.67 3.21
1554 1680 2.578786 GTGGATGATGATGACATGGCA 58.421 47.619 2.18 2.18 36.82 4.92
1561 1687 4.321974 GGCATACTACGTGGATGATGATGA 60.322 45.833 5.70 0.00 0.00 2.92
1562 1688 3.928992 GGCATACTACGTGGATGATGATG 59.071 47.826 5.70 0.80 0.00 3.07
1563 1689 3.578282 TGGCATACTACGTGGATGATGAT 59.422 43.478 5.70 0.00 0.00 2.45
1606 1732 2.194868 CTAAATGACCCCCGCCCC 59.805 66.667 0.00 0.00 0.00 5.80
1607 1733 1.153025 GTCTAAATGACCCCCGCCC 60.153 63.158 0.00 0.00 39.69 6.13
1608 1734 1.523032 CGTCTAAATGACCCCCGCC 60.523 63.158 0.00 0.00 42.49 6.13
1609 1735 1.523032 CCGTCTAAATGACCCCCGC 60.523 63.158 0.00 0.00 42.49 6.13
1610 1736 0.251073 AACCGTCTAAATGACCCCCG 59.749 55.000 0.00 0.00 42.49 5.73
1616 1742 7.201574 CCGATGTATTGAAAACCGTCTAAATGA 60.202 37.037 0.00 0.00 0.00 2.57
1692 1818 5.169836 AGCTAAACTTGTATTATTGGCGC 57.830 39.130 0.00 0.00 34.86 6.53
1693 1819 7.968405 AGAAAAGCTAAACTTGTATTATTGGCG 59.032 33.333 0.00 0.00 39.09 5.69
1701 1827 7.824779 CCTCACCTAGAAAAGCTAAACTTGTAT 59.175 37.037 0.00 0.00 39.09 2.29
1707 1833 5.795972 ACTCCTCACCTAGAAAAGCTAAAC 58.204 41.667 0.00 0.00 0.00 2.01
1712 1838 4.142116 GGAGTACTCCTCACCTAGAAAAGC 60.142 50.000 31.12 2.05 46.16 3.51
1776 1903 9.387257 CCCTCCGTAAACTAATATAAAAGTGTT 57.613 33.333 0.00 0.00 0.00 3.32
1777 1904 8.761689 TCCCTCCGTAAACTAATATAAAAGTGT 58.238 33.333 0.00 0.00 0.00 3.55
1778 1905 9.257651 CTCCCTCCGTAAACTAATATAAAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
1779 1906 8.985922 ACTCCCTCCGTAAACTAATATAAAAGT 58.014 33.333 0.00 0.00 0.00 2.66
1782 1909 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
1783 1910 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1785 1912 9.646522 TTAAGTACTCCCTCCGTAAACTAATAT 57.353 33.333 0.00 0.00 0.00 1.28
1786 1913 9.646522 ATTAAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
1787 1914 7.961326 TTAAGTACTCCCTCCGTAAACTAAT 57.039 36.000 0.00 0.00 0.00 1.73
1788 1915 7.961326 ATTAAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
1789 1916 8.903820 GTTATTAAGTACTCCCTCCGTAAACTA 58.096 37.037 0.00 0.00 0.00 2.24
1790 1917 7.617329 AGTTATTAAGTACTCCCTCCGTAAACT 59.383 37.037 0.00 0.00 0.00 2.66
1791 1918 7.776107 AGTTATTAAGTACTCCCTCCGTAAAC 58.224 38.462 0.00 0.00 0.00 2.01
1792 1919 7.961326 AGTTATTAAGTACTCCCTCCGTAAA 57.039 36.000 0.00 0.00 0.00 2.01
1793 1920 9.646522 AATAGTTATTAAGTACTCCCTCCGTAA 57.353 33.333 0.00 0.00 0.00 3.18
1794 1921 9.289782 GAATAGTTATTAAGTACTCCCTCCGTA 57.710 37.037 0.00 0.00 0.00 4.02
1795 1922 7.781693 TGAATAGTTATTAAGTACTCCCTCCGT 59.218 37.037 0.00 0.00 0.00 4.69
1796 1923 8.174733 TGAATAGTTATTAAGTACTCCCTCCG 57.825 38.462 0.00 0.00 0.00 4.63
1797 1924 9.761504 GTTGAATAGTTATTAAGTACTCCCTCC 57.238 37.037 0.00 0.00 0.00 4.30
2033 2266 0.814010 ACTGGTGCAACAAGGTCGAC 60.814 55.000 5.64 7.13 44.27 4.20
2035 2268 1.808411 ATACTGGTGCAACAAGGTCG 58.192 50.000 5.64 0.00 44.27 4.79
2273 2525 6.153510 GGAAGAGCCCTTTTTACTGAATTCAT 59.846 38.462 8.96 2.32 31.62 2.57
2349 2601 2.009774 GACACAGTAAATGCGGCTCAT 58.990 47.619 0.00 0.00 36.87 2.90
2381 2635 5.007234 TGGTTTGTTAACAAGTGATGACTCG 59.993 40.000 19.72 0.00 37.15 4.18
2454 2710 3.928992 CCGTAGATCCATTCCATTCGATG 59.071 47.826 0.00 0.00 0.00 3.84
2494 4412 1.202818 AGTTGAACTCCTGACCAAGCC 60.203 52.381 0.00 0.00 0.00 4.35
2513 4431 9.472361 AGTTTTCATCAATCTTGTTTTCATCAG 57.528 29.630 0.00 0.00 0.00 2.90
2570 4488 4.572985 TTGAAAGAACAGGCAATCAGTG 57.427 40.909 0.00 0.00 0.00 3.66
2595 4516 5.411831 TGATACAGTGAGACTCAAGCAAT 57.588 39.130 6.76 0.00 0.00 3.56
2613 4534 7.041721 AGCAACACTTCGATCTACAAATGATA 58.958 34.615 0.00 0.00 0.00 2.15
2706 4627 4.814294 ACGGCAATCCTCGACGCC 62.814 66.667 0.00 0.00 41.30 5.68
2981 4924 9.838339 AATTTCTAATTGTACTCCATGTCCTAG 57.162 33.333 0.00 0.00 0.00 3.02
3120 5063 1.295423 CGACAACTTCCCCGTCCAT 59.705 57.895 0.00 0.00 0.00 3.41
3225 5170 9.756571 TTCTTATAGTGTTTATTTTAAGGGCCA 57.243 29.630 6.18 0.00 0.00 5.36
3269 5214 0.038166 ATGCCCTGTCGGATTTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
3522 5505 2.061773 CTCACTTGTGAAGCTACGTGG 58.938 52.381 0.00 0.00 0.00 4.94
3526 5509 5.578727 CCATTCTACTCACTTGTGAAGCTAC 59.421 44.000 4.95 0.00 0.00 3.58
3553 5536 4.506886 TTTGGCGGTATAAAACTTGGTG 57.493 40.909 0.00 0.00 0.00 4.17
4110 6137 3.469564 AAGTTCACGACTTGCCACA 57.530 47.368 0.00 0.00 46.66 4.17
4144 6171 1.436336 GACGACGACCATGGTAGGG 59.564 63.158 26.29 19.72 0.00 3.53
4145 6172 1.436336 GGACGACGACCATGGTAGG 59.564 63.158 26.29 19.43 0.00 3.18
4146 6173 1.436336 GGGACGACGACCATGGTAG 59.564 63.158 19.80 21.09 0.00 3.18
4147 6174 2.053865 GGGGACGACGACCATGGTA 61.054 63.158 19.80 0.00 0.00 3.25
4148 6175 3.387947 GGGGACGACGACCATGGT 61.388 66.667 19.89 19.89 0.00 3.55
4149 6176 2.656069 AAGGGGACGACGACCATGG 61.656 63.158 17.82 11.19 0.00 3.66
4150 6177 1.447838 CAAGGGGACGACGACCATG 60.448 63.158 17.82 9.59 0.00 3.66
4151 6178 2.656069 CCAAGGGGACGACGACCAT 61.656 63.158 17.82 6.68 35.59 3.55
4152 6179 3.307906 CCAAGGGGACGACGACCA 61.308 66.667 17.82 0.00 35.59 4.02
4153 6180 2.993264 TCCAAGGGGACGACGACC 60.993 66.667 7.89 7.89 38.64 4.79
4154 6181 2.210341 GACTCCAAGGGGACGACGAC 62.210 65.000 0.00 0.00 38.64 4.34
4155 6182 1.975407 GACTCCAAGGGGACGACGA 60.975 63.158 0.00 0.00 38.64 4.20
4156 6183 0.679002 TAGACTCCAAGGGGACGACG 60.679 60.000 0.00 0.00 38.64 5.12
4157 6184 1.104630 CTAGACTCCAAGGGGACGAC 58.895 60.000 0.00 0.00 38.64 4.34
4158 6185 0.683504 GCTAGACTCCAAGGGGACGA 60.684 60.000 0.00 0.00 38.64 4.20
4159 6186 0.970937 TGCTAGACTCCAAGGGGACG 60.971 60.000 0.00 0.00 38.64 4.79
4160 6187 1.139853 CATGCTAGACTCCAAGGGGAC 59.860 57.143 0.00 0.00 38.64 4.46
4161 6188 1.008327 TCATGCTAGACTCCAAGGGGA 59.992 52.381 0.00 0.00 42.29 4.81
4162 6189 1.500474 TCATGCTAGACTCCAAGGGG 58.500 55.000 0.00 0.00 0.00 4.79
4429 12202 0.530744 ACGAAGCCGCTGATAGTTGA 59.469 50.000 0.00 0.00 39.95 3.18
4561 12392 3.007290 ACATGATCCCACATCACGATAGG 59.993 47.826 0.00 0.00 43.77 2.57
4562 12393 4.263018 ACATGATCCCACATCACGATAG 57.737 45.455 0.00 0.00 46.19 2.08
4563 12394 4.100808 TGAACATGATCCCACATCACGATA 59.899 41.667 0.00 0.00 0.00 2.92
4708 12672 2.088950 AACATTCGACCCAGGTAACG 57.911 50.000 0.00 0.00 46.39 3.18
4709 12673 5.702209 TCTTAAAACATTCGACCCAGGTAAC 59.298 40.000 0.00 0.00 0.00 2.50
4780 12744 8.276325 CCGATAAACAGATTTACTAACAGCATC 58.724 37.037 0.00 0.00 33.09 3.91
4783 12747 7.535489 ACCGATAAACAGATTTACTAACAGC 57.465 36.000 0.00 0.00 33.09 4.40
4836 12803 0.180171 CACCACTGTCACTCCCAACA 59.820 55.000 0.00 0.00 0.00 3.33
4927 12894 9.113838 CATTGAAACCATAGCTTATTAGTGTCT 57.886 33.333 0.00 0.00 0.00 3.41
5242 14630 4.632153 ACACGCACTATCAAAGAGAAAGT 58.368 39.130 0.00 0.00 0.00 2.66
5249 14637 2.068519 TGCAGACACGCACTATCAAAG 58.931 47.619 0.00 0.00 36.86 2.77
5283 14671 3.251004 GTGAACTGAAACCTAGCCAACAG 59.749 47.826 0.00 0.00 0.00 3.16
5343 14731 0.166597 CACGCACAACAGCTACATGG 59.833 55.000 0.00 0.00 0.00 3.66
5360 14748 1.003580 TCTGCAATCCCAAGAGACCAC 59.996 52.381 0.00 0.00 0.00 4.16
5395 14783 4.323792 CCAAGTCCTCACCATCTGTTACAT 60.324 45.833 0.00 0.00 0.00 2.29
5470 14876 3.242543 CGTTGGAGTTGCTCTAATGCATC 60.243 47.826 0.00 0.00 42.96 3.91
5494 14900 1.299926 GCGGATAGAATGCGTCGGT 60.300 57.895 2.85 0.00 46.32 4.69
5561 14977 3.470567 CGGACAACAGACGCTCGC 61.471 66.667 0.00 0.00 0.00 5.03
5582 14998 4.657814 ATATGGGCTCGAAATGGGTTAT 57.342 40.909 0.00 0.00 0.00 1.89
5601 15017 1.810151 GACGCAAACTGGGCTCAAATA 59.190 47.619 0.00 0.00 33.10 1.40
5625 15041 0.391130 CACGTCCATTCCATGTCCGT 60.391 55.000 0.00 0.00 35.84 4.69
5691 15108 0.479589 AGGGAGGGGGAATGGTCAAA 60.480 55.000 0.00 0.00 0.00 2.69
5709 15126 2.108566 CGGCTGCAGATGGGAGAG 59.891 66.667 20.43 0.00 37.05 3.20
5774 15191 4.512914 GAGGGTGATGGCCTGGGC 62.513 72.222 14.23 14.23 41.06 5.36
5782 15208 1.912043 GATATCTGGGGGAGGGTGATG 59.088 57.143 0.00 0.00 0.00 3.07
5792 15218 1.204113 GCTGGGGGAGATATCTGGGG 61.204 65.000 10.74 0.00 0.00 4.96
5799 15225 0.685097 GCGTATTGCTGGGGGAGATA 59.315 55.000 0.00 0.00 41.73 1.98
5832 15258 0.099791 CAACGCCGACAAGTTTGGTT 59.900 50.000 0.00 0.00 0.00 3.67
5833 15259 1.720694 CCAACGCCGACAAGTTTGGT 61.721 55.000 0.00 0.00 0.00 3.67
5836 15262 1.720694 CCACCAACGCCGACAAGTTT 61.721 55.000 0.00 0.00 0.00 2.66
5859 15285 2.102357 CTACGACGTCGGCTGCAT 59.898 61.111 37.89 20.67 44.95 3.96
5967 15396 2.432146 CCAGTCCAGATAGCAAGCTGTA 59.568 50.000 4.53 0.00 37.43 2.74
5972 15401 0.471617 CCCCCAGTCCAGATAGCAAG 59.528 60.000 0.00 0.00 0.00 4.01
5973 15402 0.044092 TCCCCCAGTCCAGATAGCAA 59.956 55.000 0.00 0.00 0.00 3.91
5978 15408 2.365635 CCGTCCCCCAGTCCAGAT 60.366 66.667 0.00 0.00 0.00 2.90
5979 15409 4.715130 CCCGTCCCCCAGTCCAGA 62.715 72.222 0.00 0.00 0.00 3.86
6002 15432 3.927163 GAAGTCGGCCGGCGAAGAA 62.927 63.158 26.29 0.00 0.00 2.52
6139 15599 2.750807 GCCTAGCAATGTGGTCATGGAT 60.751 50.000 0.00 0.00 34.19 3.41
6182 15654 0.103026 CGGAACATGGCTCGAGATCA 59.897 55.000 18.75 13.88 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.