Multiple sequence alignment - TraesCS6D01G130500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G130500 chr6D 100.000 4408 0 0 234 4641 97012008 97016415 0.000000e+00 8141.0
1 TraesCS6D01G130500 chr6D 100.000 71 0 0 1 71 97011775 97011845 1.050000e-26 132.0
2 TraesCS6D01G130500 chr6D 84.874 119 13 3 437 550 104990568 104990450 1.060000e-21 115.0
3 TraesCS6D01G130500 chr6A 92.548 2013 136 8 1956 3960 115945939 115947945 0.000000e+00 2874.0
4 TraesCS6D01G130500 chr6A 90.060 1167 87 18 1003 2162 115944849 115945993 0.000000e+00 1485.0
5 TraesCS6D01G130500 chr6A 92.424 264 11 5 655 914 115944264 115944522 7.340000e-98 368.0
6 TraesCS6D01G130500 chr6A 77.103 428 58 22 259 668 115943805 115944210 1.310000e-50 211.0
7 TraesCS6D01G130500 chr6A 90.840 131 12 0 1956 2086 115946015 115946145 4.770000e-40 176.0
8 TraesCS6D01G130500 chr6A 89.394 66 2 1 4524 4589 115948166 115948226 1.380000e-10 78.7
9 TraesCS6D01G130500 chr6A 78.226 124 13 8 1888 2010 174647049 174646939 3.000000e-07 67.6
10 TraesCS6D01G130500 chr6A 78.226 124 13 8 1888 2010 594172611 594172501 3.000000e-07 67.6
11 TraesCS6D01G130500 chr6A 88.889 54 1 2 506 559 115944101 115944149 1.390000e-05 62.1
12 TraesCS6D01G130500 chr6B 92.865 1892 114 14 2036 3918 180923035 180924914 0.000000e+00 2726.0
13 TraesCS6D01G130500 chr6B 92.958 1491 75 15 605 2086 180921694 180923163 0.000000e+00 2145.0
14 TraesCS6D01G130500 chr6B 83.333 228 15 9 3928 4132 180924963 180925190 6.130000e-44 189.0
15 TraesCS6D01G130500 chr6B 85.976 164 13 7 4251 4414 180925246 180925399 2.870000e-37 167.0
16 TraesCS6D01G130500 chr7A 87.143 700 84 5 2951 3645 663531153 663531851 0.000000e+00 789.0
17 TraesCS6D01G130500 chr7A 96.154 416 15 1 982 1397 663529017 663529431 0.000000e+00 678.0
18 TraesCS6D01G130500 chr7A 87.455 279 35 0 2324 2602 663529704 663529982 5.790000e-84 322.0
19 TraesCS6D01G130500 chr7B 86.963 698 85 6 2951 3643 632491649 632492345 0.000000e+00 780.0
20 TraesCS6D01G130500 chr7B 87.455 279 35 0 2324 2602 632490142 632490420 5.790000e-84 322.0
21 TraesCS6D01G130500 chr7B 97.959 49 0 1 4200 4248 66875841 66875888 2.980000e-12 84.2
22 TraesCS6D01G130500 chr7B 87.500 56 3 4 575 626 670899861 670899916 1.390000e-05 62.1
23 TraesCS6D01G130500 chr7B 87.500 56 3 4 575 626 670941491 670941546 1.390000e-05 62.1
24 TraesCS6D01G130500 chr7B 87.500 56 3 4 575 626 671009429 671009484 1.390000e-05 62.1
25 TraesCS6D01G130500 chr7B 87.273 55 3 4 575 625 671192270 671192324 5.010000e-05 60.2
26 TraesCS6D01G130500 chr1A 87.706 667 73 6 2965 3628 452020221 452020881 0.000000e+00 769.0
27 TraesCS6D01G130500 chr1A 91.960 398 30 2 1001 1397 452018577 452018973 1.460000e-154 556.0
28 TraesCS6D01G130500 chr7D 86.514 697 90 4 2951 3643 573694300 573694996 0.000000e+00 763.0
29 TraesCS6D01G130500 chr7D 95.327 428 17 2 994 1419 573692178 573692604 0.000000e+00 676.0
30 TraesCS6D01G130500 chr7D 88.530 279 32 0 2324 2602 573692842 573693120 5.750000e-89 339.0
31 TraesCS6D01G130500 chr7D 85.437 103 7 4 4426 4528 246838471 246838377 2.950000e-17 100.0
32 TraesCS6D01G130500 chr7D 90.196 51 3 2 567 615 199127660 199127710 1.080000e-06 65.8
33 TraesCS6D01G130500 chr1D 87.275 668 76 6 2965 3629 351247234 351247895 0.000000e+00 754.0
34 TraesCS6D01G130500 chr1D 91.709 398 31 2 1001 1397 351245582 351245978 6.790000e-153 551.0
35 TraesCS6D01G130500 chr1D 90.909 55 5 0 4199 4253 308537050 308536996 1.790000e-09 75.0
36 TraesCS6D01G130500 chr1B 87.275 668 76 6 2965 3629 473824102 473824763 0.000000e+00 754.0
37 TraesCS6D01G130500 chr1B 86.627 673 86 4 2959 3628 544997399 544996728 0.000000e+00 741.0
38 TraesCS6D01G130500 chr1B 100.000 48 0 0 4202 4249 250983445 250983398 6.400000e-14 89.8
39 TraesCS6D01G130500 chr1B 92.727 55 4 0 4202 4256 26616599 26616545 3.850000e-11 80.5
40 TraesCS6D01G130500 chr5A 92.677 396 29 0 1001 1396 691671079 691670684 5.210000e-159 571.0
41 TraesCS6D01G130500 chr5A 78.226 124 13 8 1888 2010 437908172 437908062 3.000000e-07 67.6
42 TraesCS6D01G130500 chr5A 78.226 124 13 8 1888 2010 564935673 564935783 3.000000e-07 67.6
43 TraesCS6D01G130500 chr5A 89.130 46 4 1 2118 2163 633479884 633479928 6.490000e-04 56.5
44 TraesCS6D01G130500 chr4B 92.424 396 30 0 1001 1396 654037732 654037337 2.420000e-157 566.0
45 TraesCS6D01G130500 chr4B 89.552 67 6 1 4185 4251 276961304 276961369 2.980000e-12 84.2
46 TraesCS6D01G130500 chrUn 92.172 396 31 0 1001 1396 126673966 126674361 1.130000e-155 560.0
47 TraesCS6D01G130500 chrUn 87.500 56 3 4 575 626 147163102 147163157 1.390000e-05 62.1
48 TraesCS6D01G130500 chrUn 87.500 56 3 4 575 626 147244951 147245006 1.390000e-05 62.1
49 TraesCS6D01G130500 chrUn 87.500 56 3 4 575 626 279381604 279381659 1.390000e-05 62.1
50 TraesCS6D01G130500 chr4D 83.784 259 42 0 2324 2582 6898537 6898795 3.590000e-61 246.0
51 TraesCS6D01G130500 chr4D 100.000 44 0 0 4204 4247 297228079 297228036 1.070000e-11 82.4
52 TraesCS6D01G130500 chr2D 88.073 109 5 4 4416 4524 459304910 459304810 6.310000e-24 122.0
53 TraesCS6D01G130500 chr2D 85.437 103 11 3 4420 4518 55399172 55399274 2.280000e-18 104.0
54 TraesCS6D01G130500 chr5D 86.364 110 7 4 4415 4524 269021949 269021848 3.800000e-21 113.0
55 TraesCS6D01G130500 chr3D 86.667 105 8 4 4417 4518 423643651 423643752 1.370000e-20 111.0
56 TraesCS6D01G130500 chr3D 96.154 52 2 0 4198 4249 170963907 170963958 8.270000e-13 86.1
57 TraesCS6D01G130500 chr5B 88.000 100 3 8 4420 4518 292729078 292729169 4.910000e-20 110.0
58 TraesCS6D01G130500 chr3B 85.714 105 8 5 4420 4524 763345324 763345421 2.280000e-18 104.0
59 TraesCS6D01G130500 chr3B 81.818 121 15 6 4414 4528 790571993 790572112 1.370000e-15 95.3
60 TraesCS6D01G130500 chr3B 94.340 53 3 0 4198 4250 618180560 618180508 1.070000e-11 82.4
61 TraesCS6D01G130500 chr2B 85.437 103 6 7 4423 4524 503460115 503460021 1.060000e-16 99.0
62 TraesCS6D01G130500 chr2B 89.091 55 3 3 567 619 303166817 303166870 1.080000e-06 65.8
63 TraesCS6D01G130500 chr2A 85.417 96 7 7 4159 4247 518911290 518911195 4.940000e-15 93.5
64 TraesCS6D01G130500 chr3A 78.571 126 14 9 1888 2010 216357039 216357154 2.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G130500 chr6D 97011775 97016415 4640 False 4136.500000 8141 100.000000 1 4641 2 chr6D.!!$F1 4640
1 TraesCS6D01G130500 chr6A 115943805 115948226 4421 False 750.685714 2874 88.751143 259 4589 7 chr6A.!!$F1 4330
2 TraesCS6D01G130500 chr6B 180921694 180925399 3705 False 1306.750000 2726 88.783000 605 4414 4 chr6B.!!$F1 3809
3 TraesCS6D01G130500 chr7A 663529017 663531851 2834 False 596.333333 789 90.250667 982 3645 3 chr7A.!!$F1 2663
4 TraesCS6D01G130500 chr7B 632490142 632492345 2203 False 551.000000 780 87.209000 2324 3643 2 chr7B.!!$F6 1319
5 TraesCS6D01G130500 chr1A 452018577 452020881 2304 False 662.500000 769 89.833000 1001 3628 2 chr1A.!!$F1 2627
6 TraesCS6D01G130500 chr7D 573692178 573694996 2818 False 592.666667 763 90.123667 994 3643 3 chr7D.!!$F2 2649
7 TraesCS6D01G130500 chr1D 351245582 351247895 2313 False 652.500000 754 89.492000 1001 3629 2 chr1D.!!$F1 2628
8 TraesCS6D01G130500 chr1B 473824102 473824763 661 False 754.000000 754 87.275000 2965 3629 1 chr1B.!!$F1 664
9 TraesCS6D01G130500 chr1B 544996728 544997399 671 True 741.000000 741 86.627000 2959 3628 1 chr1B.!!$R3 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.036671 CCCTACCACCACGTCCTTTC 60.037 60.0 0.00 0.0 0.00 2.62 F
770 893 1.012486 GTAAACCGCCGACCTGACTG 61.012 60.0 0.00 0.0 0.00 3.51 F
1795 2191 0.529992 CATTCCGTCGGCCTTCTACC 60.530 60.0 6.34 0.0 0.00 3.18 F
2013 2414 0.469494 TTCTCAAGCACCAGTGAGCA 59.531 50.0 0.99 0.0 40.93 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 2057 0.322546 ACCATCCAAAACGCCTCTCC 60.323 55.0 0.0 0.0 0.00 3.71 R
1831 2227 0.902984 TGCACTGGGACCTCATACGT 60.903 55.0 0.0 0.0 0.00 3.57 R
3502 5521 0.037877 CCATCTCATCCATGCCCTCC 59.962 60.0 0.0 0.0 0.00 4.30 R
3657 5679 1.059098 AACAGACAGCAGGATGACCA 58.941 50.0 0.0 0.0 39.69 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.588568 GAGATCATAATGACGCAAAGAGG 57.411 43.478 0.00 0.00 0.00 3.69
23 24 5.282055 AGATCATAATGACGCAAAGAGGA 57.718 39.130 0.00 0.00 0.00 3.71
24 25 5.053145 AGATCATAATGACGCAAAGAGGAC 58.947 41.667 0.00 0.00 0.00 3.85
25 26 3.186909 TCATAATGACGCAAAGAGGACG 58.813 45.455 0.00 0.00 0.00 4.79
26 27 3.119280 TCATAATGACGCAAAGAGGACGA 60.119 43.478 0.00 0.00 0.00 4.20
27 28 1.429463 AATGACGCAAAGAGGACGAC 58.571 50.000 0.00 0.00 0.00 4.34
28 29 0.317160 ATGACGCAAAGAGGACGACA 59.683 50.000 0.00 0.00 36.09 4.35
29 30 0.103390 TGACGCAAAGAGGACGACAA 59.897 50.000 0.00 0.00 0.00 3.18
30 31 1.214367 GACGCAAAGAGGACGACAAA 58.786 50.000 0.00 0.00 0.00 2.83
31 32 1.192534 GACGCAAAGAGGACGACAAAG 59.807 52.381 0.00 0.00 0.00 2.77
32 33 0.110644 CGCAAAGAGGACGACAAAGC 60.111 55.000 0.00 0.00 0.00 3.51
33 34 0.238553 GCAAAGAGGACGACAAAGCC 59.761 55.000 0.00 0.00 0.00 4.35
34 35 1.593196 CAAAGAGGACGACAAAGCCA 58.407 50.000 0.00 0.00 0.00 4.75
35 36 2.154462 CAAAGAGGACGACAAAGCCAT 58.846 47.619 0.00 0.00 0.00 4.40
36 37 1.813513 AAGAGGACGACAAAGCCATG 58.186 50.000 0.00 0.00 0.00 3.66
37 38 0.976641 AGAGGACGACAAAGCCATGA 59.023 50.000 0.00 0.00 0.00 3.07
38 39 1.347707 AGAGGACGACAAAGCCATGAA 59.652 47.619 0.00 0.00 0.00 2.57
39 40 2.151202 GAGGACGACAAAGCCATGAAA 58.849 47.619 0.00 0.00 0.00 2.69
40 41 1.880027 AGGACGACAAAGCCATGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
41 42 1.880027 GGACGACAAAGCCATGAAACT 59.120 47.619 0.00 0.00 0.00 2.66
42 43 3.071479 GGACGACAAAGCCATGAAACTA 58.929 45.455 0.00 0.00 0.00 2.24
43 44 3.120304 GGACGACAAAGCCATGAAACTAC 60.120 47.826 0.00 0.00 0.00 2.73
44 45 3.472652 ACGACAAAGCCATGAAACTACA 58.527 40.909 0.00 0.00 0.00 2.74
45 46 3.880490 ACGACAAAGCCATGAAACTACAA 59.120 39.130 0.00 0.00 0.00 2.41
46 47 4.219033 CGACAAAGCCATGAAACTACAAC 58.781 43.478 0.00 0.00 0.00 3.32
47 48 4.260990 CGACAAAGCCATGAAACTACAACA 60.261 41.667 0.00 0.00 0.00 3.33
48 49 5.587289 GACAAAGCCATGAAACTACAACAA 58.413 37.500 0.00 0.00 0.00 2.83
49 50 6.160576 ACAAAGCCATGAAACTACAACAAT 57.839 33.333 0.00 0.00 0.00 2.71
50 51 6.581712 ACAAAGCCATGAAACTACAACAATT 58.418 32.000 0.00 0.00 0.00 2.32
51 52 7.721402 ACAAAGCCATGAAACTACAACAATTA 58.279 30.769 0.00 0.00 0.00 1.40
52 53 8.200792 ACAAAGCCATGAAACTACAACAATTAA 58.799 29.630 0.00 0.00 0.00 1.40
53 54 9.039870 CAAAGCCATGAAACTACAACAATTAAA 57.960 29.630 0.00 0.00 0.00 1.52
54 55 8.816640 AAGCCATGAAACTACAACAATTAAAG 57.183 30.769 0.00 0.00 0.00 1.85
55 56 8.177119 AGCCATGAAACTACAACAATTAAAGA 57.823 30.769 0.00 0.00 0.00 2.52
56 57 8.299570 AGCCATGAAACTACAACAATTAAAGAG 58.700 33.333 0.00 0.00 0.00 2.85
57 58 8.296713 GCCATGAAACTACAACAATTAAAGAGA 58.703 33.333 0.00 0.00 0.00 3.10
58 59 9.612620 CCATGAAACTACAACAATTAAAGAGAC 57.387 33.333 0.00 0.00 0.00 3.36
62 63 9.170584 GAAACTACAACAATTAAAGAGACAAGC 57.829 33.333 0.00 0.00 0.00 4.01
63 64 8.451908 AACTACAACAATTAAAGAGACAAGCT 57.548 30.769 0.00 0.00 0.00 3.74
64 65 9.555727 AACTACAACAATTAAAGAGACAAGCTA 57.444 29.630 0.00 0.00 0.00 3.32
65 66 9.555727 ACTACAACAATTAAAGAGACAAGCTAA 57.444 29.630 0.00 0.00 0.00 3.09
66 67 9.813080 CTACAACAATTAAAGAGACAAGCTAAC 57.187 33.333 0.00 0.00 0.00 2.34
67 68 7.352739 ACAACAATTAAAGAGACAAGCTAACG 58.647 34.615 0.00 0.00 0.00 3.18
68 69 7.012044 ACAACAATTAAAGAGACAAGCTAACGT 59.988 33.333 0.00 0.00 0.00 3.99
69 70 6.888430 ACAATTAAAGAGACAAGCTAACGTG 58.112 36.000 0.00 0.00 0.00 4.49
70 71 4.985044 TTAAAGAGACAAGCTAACGTGC 57.015 40.909 0.00 0.00 0.00 5.34
253 254 2.253154 GGGTTGTAACGCCGCAAC 59.747 61.111 7.70 7.70 42.86 4.17
254 255 2.544698 GGGTTGTAACGCCGCAACA 61.545 57.895 15.16 0.00 44.70 3.33
255 256 1.577421 GGTTGTAACGCCGCAACAT 59.423 52.632 15.16 0.00 44.70 2.71
256 257 0.039888 GGTTGTAACGCCGCAACATT 60.040 50.000 15.16 0.00 44.70 2.71
257 258 1.049251 GTTGTAACGCCGCAACATTG 58.951 50.000 10.39 0.00 43.03 2.82
263 264 1.233950 ACGCCGCAACATTGATGTCA 61.234 50.000 0.00 0.00 40.80 3.58
266 267 2.609350 GCCGCAACATTGATGTCAAAT 58.391 42.857 0.00 0.00 40.80 2.32
320 321 9.349713 TCATACAACAAGTAGGAAACAAAGATT 57.650 29.630 0.00 0.00 40.26 2.40
324 325 9.797556 ACAACAAGTAGGAAACAAAGATTAAAC 57.202 29.630 0.00 0.00 0.00 2.01
328 329 8.968242 CAAGTAGGAAACAAAGATTAAACAAGC 58.032 33.333 0.00 0.00 0.00 4.01
329 330 8.232913 AGTAGGAAACAAAGATTAAACAAGCA 57.767 30.769 0.00 0.00 0.00 3.91
330 331 8.352942 AGTAGGAAACAAAGATTAAACAAGCAG 58.647 33.333 0.00 0.00 0.00 4.24
331 332 7.112452 AGGAAACAAAGATTAAACAAGCAGT 57.888 32.000 0.00 0.00 0.00 4.40
376 377 1.557651 GCTTCGTCATCCGGTTCTAC 58.442 55.000 0.00 0.00 37.11 2.59
380 381 1.041447 CGTCATCCGGTTCTACCCCT 61.041 60.000 0.00 0.00 33.75 4.79
396 397 0.036671 CCCTACCACCACGTCCTTTC 60.037 60.000 0.00 0.00 0.00 2.62
400 401 1.604604 ACCACCACGTCCTTTCAATG 58.395 50.000 0.00 0.00 0.00 2.82
423 442 1.710816 TTTTTGTCCCATCACACCCC 58.289 50.000 0.00 0.00 0.00 4.95
447 466 4.981389 TTTTTGCACATTTTCCATACGC 57.019 36.364 0.00 0.00 0.00 4.42
448 467 2.645730 TTGCACATTTTCCATACGCC 57.354 45.000 0.00 0.00 0.00 5.68
455 474 5.167121 CACATTTTCCATACGCCAATCAAA 58.833 37.500 0.00 0.00 0.00 2.69
458 477 3.840890 TTCCATACGCCAATCAAACAC 57.159 42.857 0.00 0.00 0.00 3.32
472 491 9.135843 GCCAATCAAACACCTTAATTTACTTAC 57.864 33.333 0.00 0.00 0.00 2.34
481 500 9.524106 ACACCTTAATTTACTTACTTTTTGCAC 57.476 29.630 0.00 0.00 0.00 4.57
491 510 3.744238 ACTTTTTGCACCAATACCACC 57.256 42.857 0.00 0.00 0.00 4.61
494 513 3.742433 TTTTGCACCAATACCACCTTG 57.258 42.857 0.00 0.00 0.00 3.61
498 517 3.505386 TGCACCAATACCACCTTGATTT 58.495 40.909 0.00 0.00 0.00 2.17
499 518 4.667573 TGCACCAATACCACCTTGATTTA 58.332 39.130 0.00 0.00 0.00 1.40
500 519 4.461081 TGCACCAATACCACCTTGATTTAC 59.539 41.667 0.00 0.00 0.00 2.01
502 521 5.185056 GCACCAATACCACCTTGATTTACTT 59.815 40.000 0.00 0.00 0.00 2.24
503 522 6.376018 GCACCAATACCACCTTGATTTACTTA 59.624 38.462 0.00 0.00 0.00 2.24
504 523 7.627726 GCACCAATACCACCTTGATTTACTTAC 60.628 40.741 0.00 0.00 0.00 2.34
507 526 8.458843 CCAATACCACCTTGATTTACTTACAAG 58.541 37.037 0.00 0.00 40.12 3.16
540 594 4.171005 CACAATCACATGCAGGATTTGAC 58.829 43.478 4.84 0.00 31.63 3.18
541 595 3.827876 ACAATCACATGCAGGATTTGACA 59.172 39.130 4.84 0.00 31.63 3.58
542 596 4.281435 ACAATCACATGCAGGATTTGACAA 59.719 37.500 4.84 0.00 31.63 3.18
543 597 5.221481 ACAATCACATGCAGGATTTGACAAA 60.221 36.000 4.84 2.48 31.63 2.83
544 598 5.670792 ATCACATGCAGGATTTGACAAAT 57.329 34.783 13.24 13.24 0.00 2.32
545 599 6.778834 ATCACATGCAGGATTTGACAAATA 57.221 33.333 13.34 0.00 0.00 1.40
559 613 8.721019 ATTTGACAAATATTTAACATGGGCAG 57.279 30.769 11.75 0.00 0.00 4.85
560 614 7.473735 TTGACAAATATTTAACATGGGCAGA 57.526 32.000 0.00 0.00 0.00 4.26
561 615 7.658525 TGACAAATATTTAACATGGGCAGAT 57.341 32.000 0.00 0.00 0.00 2.90
562 616 8.759481 TGACAAATATTTAACATGGGCAGATA 57.241 30.769 0.00 0.00 0.00 1.98
563 617 9.194972 TGACAAATATTTAACATGGGCAGATAA 57.805 29.630 0.00 0.00 0.00 1.75
569 623 7.658525 ATTTAACATGGGCAGATAAATCACA 57.341 32.000 0.00 0.00 0.00 3.58
570 624 7.473735 TTTAACATGGGCAGATAAATCACAA 57.526 32.000 0.00 0.00 0.00 3.33
571 625 5.587388 AACATGGGCAGATAAATCACAAG 57.413 39.130 0.00 0.00 0.00 3.16
572 626 4.603131 ACATGGGCAGATAAATCACAAGT 58.397 39.130 0.00 0.00 0.00 3.16
573 627 5.018809 ACATGGGCAGATAAATCACAAGTT 58.981 37.500 0.00 0.00 0.00 2.66
574 628 6.186957 ACATGGGCAGATAAATCACAAGTTA 58.813 36.000 0.00 0.00 0.00 2.24
575 629 6.663093 ACATGGGCAGATAAATCACAAGTTAA 59.337 34.615 0.00 0.00 0.00 2.01
576 630 7.178274 ACATGGGCAGATAAATCACAAGTTAAA 59.822 33.333 0.00 0.00 0.00 1.52
577 631 7.531857 TGGGCAGATAAATCACAAGTTAAAA 57.468 32.000 0.00 0.00 0.00 1.52
578 632 7.957002 TGGGCAGATAAATCACAAGTTAAAAA 58.043 30.769 0.00 0.00 0.00 1.94
601 655 9.774413 AAAAAGTACTTATATTATGGGACGGAG 57.226 33.333 8.92 0.00 0.00 4.63
602 656 7.477945 AAGTACTTATATTATGGGACGGAGG 57.522 40.000 6.26 0.00 0.00 4.30
603 657 5.956563 AGTACTTATATTATGGGACGGAGGG 59.043 44.000 0.00 0.00 0.00 4.30
613 667 1.691801 GGGACGGAGGGAGTAGGAAAT 60.692 57.143 0.00 0.00 0.00 2.17
647 701 3.134623 AGATGATGGCAACCGTGAGATAA 59.865 43.478 0.00 0.00 0.00 1.75
684 805 3.659183 AATCCCATCCTTTGTCTCCTG 57.341 47.619 0.00 0.00 0.00 3.86
685 806 2.044793 TCCCATCCTTTGTCTCCTGT 57.955 50.000 0.00 0.00 0.00 4.00
686 807 1.909302 TCCCATCCTTTGTCTCCTGTC 59.091 52.381 0.00 0.00 0.00 3.51
687 808 1.912043 CCCATCCTTTGTCTCCTGTCT 59.088 52.381 0.00 0.00 0.00 3.41
688 809 2.093235 CCCATCCTTTGTCTCCTGTCTC 60.093 54.545 0.00 0.00 0.00 3.36
689 810 2.417924 CCATCCTTTGTCTCCTGTCTCG 60.418 54.545 0.00 0.00 0.00 4.04
690 811 1.996798 TCCTTTGTCTCCTGTCTCGT 58.003 50.000 0.00 0.00 0.00 4.18
713 836 3.550561 CGCAGAGTAAAATGCAAACGAA 58.449 40.909 0.00 0.00 42.68 3.85
770 893 1.012486 GTAAACCGCCGACCTGACTG 61.012 60.000 0.00 0.00 0.00 3.51
818 942 1.553690 ATCACCACCACCCCTCGAAG 61.554 60.000 0.00 0.00 0.00 3.79
1380 1744 1.674057 CAAGGAGGCCGAGAACTGT 59.326 57.895 0.00 0.00 0.00 3.55
1450 1814 2.384828 TCTTCCCGAAATGGATCTCGA 58.615 47.619 3.84 0.00 42.00 4.04
1468 1832 1.732077 CGAATGATTTTGGGGCGTGTG 60.732 52.381 0.00 0.00 0.00 3.82
1500 1869 3.186613 CCCTTCTTCTGTGTTAAAGCGAC 59.813 47.826 0.00 0.00 0.00 5.19
1534 1903 5.221382 TGCTATTACGATTACTGGGTTCTCC 60.221 44.000 0.00 0.00 0.00 3.71
1613 1982 2.763448 ACCTGTAGATCTGACTTCCAGC 59.237 50.000 5.18 0.00 42.62 4.85
1631 2000 1.040646 GCACTCACCCGATCAGGATA 58.959 55.000 0.76 0.00 45.00 2.59
1669 2065 1.133407 GTCTACTTGACAGGAGAGGCG 59.867 57.143 0.00 0.00 41.11 5.52
1707 2103 2.229062 TGGATCTAATCGCGGAGATCAC 59.771 50.000 30.16 23.58 46.69 3.06
1708 2104 2.229062 GGATCTAATCGCGGAGATCACA 59.771 50.000 30.16 5.78 46.69 3.58
1718 2114 2.402305 CGGAGATCACAGAATAGCAGC 58.598 52.381 0.00 0.00 0.00 5.25
1731 2127 5.816258 CAGAATAGCAGCATGGATTCGATAT 59.184 40.000 0.00 0.00 35.86 1.63
1741 2137 5.233902 GCATGGATTCGATATATGTCTGCTC 59.766 44.000 0.00 0.00 0.00 4.26
1743 2139 4.142381 TGGATTCGATATATGTCTGCTCCG 60.142 45.833 0.00 0.00 0.00 4.63
1751 2147 1.967319 ATGTCTGCTCCGTTGTTGTT 58.033 45.000 0.00 0.00 0.00 2.83
1755 2151 1.134220 TCTGCTCCGTTGTTGTTTCCT 60.134 47.619 0.00 0.00 0.00 3.36
1781 2177 6.128715 CGTGTATGATAGATCAACTGCATTCC 60.129 42.308 0.00 0.00 40.69 3.01
1784 2180 4.371786 TGATAGATCAACTGCATTCCGTC 58.628 43.478 0.00 0.00 33.08 4.79
1793 2189 1.143183 GCATTCCGTCGGCCTTCTA 59.857 57.895 6.34 0.00 0.00 2.10
1795 2191 0.529992 CATTCCGTCGGCCTTCTACC 60.530 60.000 6.34 0.00 0.00 3.18
1831 2227 6.111382 TCCATTGCATTCAAGTTGTTTTTCA 58.889 32.000 2.11 0.00 35.37 2.69
1837 2233 6.198029 TGCATTCAAGTTGTTTTTCACGTATG 59.802 34.615 2.11 0.00 0.00 2.39
1838 2234 6.416455 GCATTCAAGTTGTTTTTCACGTATGA 59.584 34.615 2.11 0.00 0.00 2.15
1840 2236 6.055231 TCAAGTTGTTTTTCACGTATGAGG 57.945 37.500 2.11 0.00 35.83 3.86
1841 2237 5.587043 TCAAGTTGTTTTTCACGTATGAGGT 59.413 36.000 2.11 0.00 35.83 3.85
1842 2238 5.668558 AGTTGTTTTTCACGTATGAGGTC 57.331 39.130 0.00 0.00 35.83 3.85
1854 2251 0.994247 ATGAGGTCCCAGTGCATTCA 59.006 50.000 0.00 0.00 0.00 2.57
1968 2369 4.214119 TCTCAAAAGAGGTTCAAAGCATCG 59.786 41.667 0.00 0.00 0.00 3.84
1989 2390 3.648009 GGTAGAGTAGCATGTCTGATGC 58.352 50.000 0.00 0.00 44.85 3.91
2013 2414 0.469494 TTCTCAAGCACCAGTGAGCA 59.531 50.000 0.99 0.00 40.93 4.26
2037 2438 4.002982 GCTTAGTGATGTGTGTGGATCAA 58.997 43.478 0.00 0.00 30.45 2.57
2058 2459 3.383620 AGCATCAGTAGAGTAGCATGC 57.616 47.619 10.51 10.51 37.50 4.06
2059 2460 2.964464 AGCATCAGTAGAGTAGCATGCT 59.036 45.455 25.99 25.99 41.65 3.79
2067 2468 5.006455 CAGTAGAGTAGCATGCTTGATGTTG 59.994 44.000 28.02 12.65 34.14 3.33
2073 2474 4.119442 AGCATGCTTGATGTTGATTTCC 57.881 40.909 16.30 0.00 34.14 3.13
2084 2485 1.963515 GTTGATTTCCCAAGCACCAGT 59.036 47.619 0.00 0.00 0.00 4.00
2086 2487 1.144708 TGATTTCCCAAGCACCAGTGA 59.855 47.619 0.99 0.00 0.00 3.41
2108 2509 2.771089 CCTGCTTAGTGATGTGTGTGT 58.229 47.619 0.00 0.00 0.00 3.72
2110 2511 3.928992 CCTGCTTAGTGATGTGTGTGTAG 59.071 47.826 0.00 0.00 0.00 2.74
2123 2676 1.128692 GTGTGTAGCAAAGCATCGGTC 59.871 52.381 0.00 0.00 0.00 4.79
2126 2679 1.134818 TGTAGCAAAGCATCGGTCGAT 60.135 47.619 0.00 0.00 34.81 3.59
2135 2688 0.792640 CATCGGTCGATTAGCATGCC 59.207 55.000 15.66 0.00 31.62 4.40
2182 2735 5.059161 GTGCCTATGATTCTGCTTGATGTA 58.941 41.667 0.00 0.00 0.00 2.29
2195 2748 8.735692 TCTGCTTGATGTATTCATTATGTTCA 57.264 30.769 0.00 0.00 33.34 3.18
2224 2777 3.599343 TCTATGTGTGTGGATTGCTGAC 58.401 45.455 0.00 0.00 0.00 3.51
2260 2814 5.573337 AACACTACTGTAGTTATCCGGTC 57.427 43.478 17.46 0.00 36.76 4.79
2261 2815 4.592942 ACACTACTGTAGTTATCCGGTCA 58.407 43.478 17.46 0.00 36.76 4.02
2265 2819 2.758979 ACTGTAGTTATCCGGTCACCTG 59.241 50.000 0.00 0.00 0.00 4.00
2273 2827 5.189145 AGTTATCCGGTCACCTGTTTATTCT 59.811 40.000 0.00 0.00 0.00 2.40
2296 2850 8.134202 TCTAGTGTAAACTGAAATGAGATCCA 57.866 34.615 0.00 0.00 0.00 3.41
2299 2853 8.641498 AGTGTAAACTGAAATGAGATCCAAAT 57.359 30.769 0.00 0.00 0.00 2.32
2309 2863 9.699410 TGAAATGAGATCCAAATTAACCTATGT 57.301 29.630 0.00 0.00 0.00 2.29
2336 2910 6.126863 TCATCTACCACAGGATTTCAAGTT 57.873 37.500 0.00 0.00 0.00 2.66
2649 3511 3.065925 GTGCTCAGTTCCCATATTCTTGC 59.934 47.826 0.00 0.00 0.00 4.01
2650 3512 3.282021 GCTCAGTTCCCATATTCTTGCA 58.718 45.455 0.00 0.00 0.00 4.08
2701 3568 4.956075 TCTACAGCTATCACCAATCAGACA 59.044 41.667 0.00 0.00 0.00 3.41
2702 3569 4.558226 ACAGCTATCACCAATCAGACAA 57.442 40.909 0.00 0.00 0.00 3.18
2751 3661 2.836479 ACGTTGTTCTTGTTTTCCGG 57.164 45.000 0.00 0.00 0.00 5.14
2770 3680 1.210478 GGTGGTGATATGGCTGACACT 59.790 52.381 0.00 0.00 34.28 3.55
2774 3684 2.679837 GGTGATATGGCTGACACTTGTG 59.320 50.000 0.00 0.00 34.28 3.33
2778 3688 2.645838 ATGGCTGACACTTGTGTTCT 57.354 45.000 7.87 0.00 0.00 3.01
2797 3708 7.011950 TGTGTTCTACTGTGGTTTTGATACTTG 59.988 37.037 0.00 0.00 0.00 3.16
2809 3725 7.914871 TGGTTTTGATACTTGCATGAATTATCG 59.085 33.333 6.60 0.00 31.69 2.92
2816 3732 9.322776 GATACTTGCATGAATTATCGATTTCAC 57.677 33.333 13.36 4.64 0.00 3.18
2828 3744 7.694388 TTATCGATTTCACATGTAGTAGTGC 57.306 36.000 1.71 0.00 35.76 4.40
2887 4605 6.728200 TGAATATTGGCATTCTTTTCGCTAG 58.272 36.000 0.00 0.00 36.16 3.42
2928 4670 9.093458 TCTCATTTCTATCTGGCATCTGTATAA 57.907 33.333 0.00 0.00 0.00 0.98
2949 4691 7.992754 ATAAGCATTCTTCTCACTCTGTTTT 57.007 32.000 0.00 0.00 33.85 2.43
2998 5017 6.888105 TCTGAACCATCTTATATCTGCAACA 58.112 36.000 0.00 0.00 0.00 3.33
3502 5521 1.671054 CTTGCACTGGTACACCGGG 60.671 63.158 6.32 0.00 46.75 5.73
3535 5554 1.519455 GATGGAGTTCACCGAGGCG 60.519 63.158 0.00 0.00 0.00 5.52
3657 5679 2.975489 CCTAAGCCACCTGACCTCATAT 59.025 50.000 0.00 0.00 0.00 1.78
3675 5697 1.283347 ATGGTCATCCTGCTGTCTGT 58.717 50.000 0.00 0.00 34.23 3.41
3749 5771 4.632153 CGGATAGATCTTTAGGTGGTTGG 58.368 47.826 0.00 0.00 0.00 3.77
3838 5860 3.840890 TGATGGTGGTTTTATGCGAAC 57.159 42.857 0.00 0.00 0.00 3.95
3861 5887 4.689071 TGTGATATTAGCGTAACTGTGGG 58.311 43.478 0.00 0.00 0.00 4.61
3870 5896 2.277084 CGTAACTGTGGGCTTGATACC 58.723 52.381 0.00 0.00 0.00 2.73
3882 5908 3.490249 GGCTTGATACCCGTAAATTTGGC 60.490 47.826 0.00 0.00 0.00 4.52
3904 5930 7.721402 TGGCAACTATATTTTGTGTCTGTTTT 58.279 30.769 0.00 0.00 37.61 2.43
3922 5948 4.060205 GTTTTCTGTGCATTTTGGCTCAT 58.940 39.130 0.00 0.00 36.77 2.90
3938 6003 6.593268 TGGCTCATGATTTCTGAAATTTGA 57.407 33.333 16.14 18.31 0.00 2.69
3939 6004 6.392354 TGGCTCATGATTTCTGAAATTTGAC 58.608 36.000 16.14 14.39 0.00 3.18
3955 6020 4.662468 TTTGACCTATTGTTGCTGCAAA 57.338 36.364 17.80 2.50 31.63 3.68
3989 6054 8.123445 GCTATATGCTCCAACATTTCAAAAAG 57.877 34.615 0.00 0.00 38.95 2.27
3995 6060 6.127366 TGCTCCAACATTTCAAAAAGAGAAGT 60.127 34.615 0.00 0.00 0.00 3.01
3996 6061 6.419116 GCTCCAACATTTCAAAAAGAGAAGTC 59.581 38.462 0.00 0.00 0.00 3.01
4004 6078 9.959775 CATTTCAAAAAGAGAAGTCGTATACTC 57.040 33.333 0.56 0.00 37.50 2.59
4026 6100 4.159693 TCCGAGCACTAGTTGATTGTATGT 59.840 41.667 0.00 0.00 0.00 2.29
4047 6132 1.780309 TCTTGGGGTTTCATCCTGTGT 59.220 47.619 0.00 0.00 0.00 3.72
4073 6158 7.287696 TGAGCAATCCAAGTATCTCAGTATGTA 59.712 37.037 0.00 0.00 37.40 2.29
4083 6171 8.818622 AGTATCTCAGTATGTACACTGGTTTA 57.181 34.615 12.19 1.75 44.98 2.01
4089 6177 7.823665 TCAGTATGTACACTGGTTTACTACAG 58.176 38.462 12.19 0.00 44.98 2.74
4091 6179 7.754027 CAGTATGTACACTGGTTTACTACAGAC 59.246 40.741 0.00 0.00 41.88 3.51
4096 6184 3.739300 CACTGGTTTACTACAGACGGTTG 59.261 47.826 0.00 0.00 38.09 3.77
4097 6185 3.243975 ACTGGTTTACTACAGACGGTTGG 60.244 47.826 0.00 0.00 38.09 3.77
4100 6188 3.930848 GGTTTACTACAGACGGTTGGATG 59.069 47.826 0.00 0.00 0.00 3.51
4121 6209 2.125912 CTCGCTTCTGTCACCCCG 60.126 66.667 0.00 0.00 0.00 5.73
4141 6274 4.290155 CCGATGTTGTTTCACTGGAAAAG 58.710 43.478 0.00 0.00 44.18 2.27
4142 6275 4.202010 CCGATGTTGTTTCACTGGAAAAGT 60.202 41.667 0.00 0.00 44.18 2.66
4143 6276 4.970003 CGATGTTGTTTCACTGGAAAAGTC 59.030 41.667 0.00 0.00 44.18 3.01
4144 6277 4.712122 TGTTGTTTCACTGGAAAAGTCC 57.288 40.909 0.00 0.00 44.18 3.85
4145 6278 3.445805 TGTTGTTTCACTGGAAAAGTCCC 59.554 43.478 0.00 0.00 44.18 4.46
4146 6279 3.662759 TGTTTCACTGGAAAAGTCCCT 57.337 42.857 0.00 0.00 44.18 4.20
4147 6280 3.551846 TGTTTCACTGGAAAAGTCCCTC 58.448 45.455 0.00 0.00 44.18 4.30
4148 6281 2.543777 TTCACTGGAAAAGTCCCTCG 57.456 50.000 0.00 0.00 44.23 4.63
4149 6282 0.685097 TCACTGGAAAAGTCCCTCGG 59.315 55.000 0.00 0.00 44.23 4.63
4150 6283 0.955919 CACTGGAAAAGTCCCTCGGC 60.956 60.000 0.00 0.00 44.23 5.54
4151 6284 1.128188 ACTGGAAAAGTCCCTCGGCT 61.128 55.000 0.00 0.00 44.23 5.52
4152 6285 0.391793 CTGGAAAAGTCCCTCGGCTC 60.392 60.000 0.00 0.00 44.23 4.70
4153 6286 1.448013 GGAAAAGTCCCTCGGCTCG 60.448 63.158 0.00 0.00 38.08 5.03
4154 6287 1.292541 GAAAAGTCCCTCGGCTCGT 59.707 57.895 0.00 0.00 0.00 4.18
4155 6288 0.320508 GAAAAGTCCCTCGGCTCGTT 60.321 55.000 0.00 0.00 0.00 3.85
4156 6289 0.108019 AAAAGTCCCTCGGCTCGTTT 59.892 50.000 0.00 0.00 0.00 3.60
4157 6290 0.971386 AAAGTCCCTCGGCTCGTTTA 59.029 50.000 0.00 0.00 0.00 2.01
4158 6291 0.971386 AAGTCCCTCGGCTCGTTTAA 59.029 50.000 0.00 0.00 0.00 1.52
4159 6292 0.245813 AGTCCCTCGGCTCGTTTAAC 59.754 55.000 0.00 0.00 0.00 2.01
4160 6293 0.245813 GTCCCTCGGCTCGTTTAACT 59.754 55.000 0.00 0.00 0.00 2.24
4161 6294 0.529378 TCCCTCGGCTCGTTTAACTC 59.471 55.000 0.00 0.00 0.00 3.01
4162 6295 0.531200 CCCTCGGCTCGTTTAACTCT 59.469 55.000 0.00 0.00 0.00 3.24
4163 6296 1.469423 CCCTCGGCTCGTTTAACTCTC 60.469 57.143 0.00 0.00 0.00 3.20
4164 6297 1.473278 CCTCGGCTCGTTTAACTCTCT 59.527 52.381 0.00 0.00 0.00 3.10
4165 6298 2.520979 CTCGGCTCGTTTAACTCTCTG 58.479 52.381 0.00 0.00 0.00 3.35
4166 6299 1.201647 TCGGCTCGTTTAACTCTCTGG 59.798 52.381 0.00 0.00 0.00 3.86
4167 6300 1.067776 CGGCTCGTTTAACTCTCTGGT 60.068 52.381 0.00 0.00 0.00 4.00
4168 6301 2.609737 CGGCTCGTTTAACTCTCTGGTT 60.610 50.000 0.00 0.00 0.00 3.67
4169 6302 2.737252 GGCTCGTTTAACTCTCTGGTTG 59.263 50.000 0.00 0.00 0.00 3.77
4170 6303 2.737252 GCTCGTTTAACTCTCTGGTTGG 59.263 50.000 0.00 0.00 0.00 3.77
4171 6304 3.554337 GCTCGTTTAACTCTCTGGTTGGA 60.554 47.826 0.00 0.00 0.00 3.53
4172 6305 4.822026 CTCGTTTAACTCTCTGGTTGGAT 58.178 43.478 0.00 0.00 0.00 3.41
4173 6306 4.566004 TCGTTTAACTCTCTGGTTGGATG 58.434 43.478 0.00 0.00 0.00 3.51
4174 6307 3.684788 CGTTTAACTCTCTGGTTGGATGG 59.315 47.826 0.00 0.00 0.00 3.51
4175 6308 4.652822 GTTTAACTCTCTGGTTGGATGGT 58.347 43.478 0.00 0.00 0.00 3.55
4176 6309 4.993705 TTAACTCTCTGGTTGGATGGTT 57.006 40.909 0.00 0.00 0.00 3.67
4177 6310 3.884037 AACTCTCTGGTTGGATGGTTT 57.116 42.857 0.00 0.00 0.00 3.27
4178 6311 3.146104 ACTCTCTGGTTGGATGGTTTG 57.854 47.619 0.00 0.00 0.00 2.93
4179 6312 2.224867 ACTCTCTGGTTGGATGGTTTGG 60.225 50.000 0.00 0.00 0.00 3.28
4180 6313 1.780309 TCTCTGGTTGGATGGTTTGGT 59.220 47.619 0.00 0.00 0.00 3.67
4181 6314 2.176798 TCTCTGGTTGGATGGTTTGGTT 59.823 45.455 0.00 0.00 0.00 3.67
4182 6315 3.396276 TCTCTGGTTGGATGGTTTGGTTA 59.604 43.478 0.00 0.00 0.00 2.85
4183 6316 4.044065 TCTCTGGTTGGATGGTTTGGTTAT 59.956 41.667 0.00 0.00 0.00 1.89
4184 6317 4.085733 TCTGGTTGGATGGTTTGGTTATG 58.914 43.478 0.00 0.00 0.00 1.90
4185 6318 3.831911 CTGGTTGGATGGTTTGGTTATGT 59.168 43.478 0.00 0.00 0.00 2.29
4186 6319 4.227197 TGGTTGGATGGTTTGGTTATGTT 58.773 39.130 0.00 0.00 0.00 2.71
4187 6320 4.039730 TGGTTGGATGGTTTGGTTATGTTG 59.960 41.667 0.00 0.00 0.00 3.33
4188 6321 4.562552 GGTTGGATGGTTTGGTTATGTTGG 60.563 45.833 0.00 0.00 0.00 3.77
4189 6322 3.850752 TGGATGGTTTGGTTATGTTGGT 58.149 40.909 0.00 0.00 0.00 3.67
4190 6323 4.227197 TGGATGGTTTGGTTATGTTGGTT 58.773 39.130 0.00 0.00 0.00 3.67
4191 6324 4.039730 TGGATGGTTTGGTTATGTTGGTTG 59.960 41.667 0.00 0.00 0.00 3.77
4192 6325 4.562552 GGATGGTTTGGTTATGTTGGTTGG 60.563 45.833 0.00 0.00 0.00 3.77
4193 6326 3.643237 TGGTTTGGTTATGTTGGTTGGA 58.357 40.909 0.00 0.00 0.00 3.53
4194 6327 4.227197 TGGTTTGGTTATGTTGGTTGGAT 58.773 39.130 0.00 0.00 0.00 3.41
4195 6328 4.656112 TGGTTTGGTTATGTTGGTTGGATT 59.344 37.500 0.00 0.00 0.00 3.01
4196 6329 5.839063 TGGTTTGGTTATGTTGGTTGGATTA 59.161 36.000 0.00 0.00 0.00 1.75
4197 6330 6.498651 TGGTTTGGTTATGTTGGTTGGATTAT 59.501 34.615 0.00 0.00 0.00 1.28
4198 6331 6.816140 GGTTTGGTTATGTTGGTTGGATTATG 59.184 38.462 0.00 0.00 0.00 1.90
4199 6332 5.590530 TGGTTATGTTGGTTGGATTATGC 57.409 39.130 0.00 0.00 0.00 3.14
4200 6333 5.268387 TGGTTATGTTGGTTGGATTATGCT 58.732 37.500 0.00 0.00 0.00 3.79
4201 6334 5.719085 TGGTTATGTTGGTTGGATTATGCTT 59.281 36.000 0.00 0.00 0.00 3.91
4202 6335 6.042143 GGTTATGTTGGTTGGATTATGCTTG 58.958 40.000 0.00 0.00 0.00 4.01
4203 6336 4.741321 ATGTTGGTTGGATTATGCTTGG 57.259 40.909 0.00 0.00 0.00 3.61
4204 6337 3.505386 TGTTGGTTGGATTATGCTTGGT 58.495 40.909 0.00 0.00 0.00 3.67
4205 6338 3.257873 TGTTGGTTGGATTATGCTTGGTG 59.742 43.478 0.00 0.00 0.00 4.17
4206 6339 2.455557 TGGTTGGATTATGCTTGGTGG 58.544 47.619 0.00 0.00 0.00 4.61
4207 6340 1.136891 GGTTGGATTATGCTTGGTGGC 59.863 52.381 0.00 0.00 0.00 5.01
4208 6341 2.102578 GTTGGATTATGCTTGGTGGCT 58.897 47.619 0.00 0.00 0.00 4.75
4209 6342 2.497273 GTTGGATTATGCTTGGTGGCTT 59.503 45.455 0.00 0.00 0.00 4.35
4210 6343 2.818921 TGGATTATGCTTGGTGGCTTT 58.181 42.857 0.00 0.00 0.00 3.51
4211 6344 3.974719 TGGATTATGCTTGGTGGCTTTA 58.025 40.909 0.00 0.00 0.00 1.85
4212 6345 4.545678 TGGATTATGCTTGGTGGCTTTAT 58.454 39.130 0.00 0.00 0.00 1.40
4213 6346 4.961730 TGGATTATGCTTGGTGGCTTTATT 59.038 37.500 0.00 0.00 0.00 1.40
4214 6347 5.424895 TGGATTATGCTTGGTGGCTTTATTT 59.575 36.000 0.00 0.00 0.00 1.40
4215 6348 6.609212 TGGATTATGCTTGGTGGCTTTATTTA 59.391 34.615 0.00 0.00 0.00 1.40
4216 6349 7.289782 TGGATTATGCTTGGTGGCTTTATTTAT 59.710 33.333 0.00 0.00 0.00 1.40
4217 6350 8.802267 GGATTATGCTTGGTGGCTTTATTTATA 58.198 33.333 0.00 0.00 0.00 0.98
4221 6354 7.475137 TGCTTGGTGGCTTTATTTATAAAGT 57.525 32.000 18.51 0.00 46.78 2.66
4222 6355 7.902087 TGCTTGGTGGCTTTATTTATAAAGTT 58.098 30.769 18.51 0.00 46.78 2.66
4223 6356 7.816995 TGCTTGGTGGCTTTATTTATAAAGTTG 59.183 33.333 18.51 1.56 46.78 3.16
4224 6357 7.277760 GCTTGGTGGCTTTATTTATAAAGTTGG 59.722 37.037 18.51 7.82 46.78 3.77
4225 6358 7.176589 TGGTGGCTTTATTTATAAAGTTGGG 57.823 36.000 18.51 0.99 46.78 4.12
4226 6359 6.046593 GGTGGCTTTATTTATAAAGTTGGGC 58.953 40.000 18.51 9.89 46.78 5.36
4227 6360 5.746721 GTGGCTTTATTTATAAAGTTGGGCG 59.253 40.000 18.51 0.00 46.78 6.13
4228 6361 5.419471 TGGCTTTATTTATAAAGTTGGGCGT 59.581 36.000 18.51 0.00 46.78 5.68
4229 6362 6.602406 TGGCTTTATTTATAAAGTTGGGCGTA 59.398 34.615 18.51 1.85 46.78 4.42
4230 6363 7.285858 TGGCTTTATTTATAAAGTTGGGCGTAT 59.714 33.333 18.51 0.00 46.78 3.06
4231 6364 7.593644 GGCTTTATTTATAAAGTTGGGCGTATG 59.406 37.037 18.51 0.00 46.78 2.39
4232 6365 7.114388 GCTTTATTTATAAAGTTGGGCGTATGC 59.886 37.037 18.51 0.00 46.78 3.14
4314 6447 1.318158 GCTCTGGCATTGAACCCCAG 61.318 60.000 6.61 6.61 45.88 4.45
4371 6504 6.552445 TTGAACTTTTGGGAGATTTTTCCA 57.448 33.333 0.00 0.00 39.09 3.53
4372 6505 6.552445 TGAACTTTTGGGAGATTTTTCCAA 57.448 33.333 0.00 0.00 39.09 3.53
4419 6552 1.632589 GGCCCTCTTTGGTTCAATGT 58.367 50.000 0.00 0.00 0.00 2.71
4420 6553 2.556559 GGGCCCTCTTTGGTTCAATGTA 60.557 50.000 17.04 0.00 0.00 2.29
4421 6554 3.365472 GGCCCTCTTTGGTTCAATGTAT 58.635 45.455 0.00 0.00 0.00 2.29
4422 6555 3.769300 GGCCCTCTTTGGTTCAATGTATT 59.231 43.478 0.00 0.00 0.00 1.89
4423 6556 4.142160 GGCCCTCTTTGGTTCAATGTATTC 60.142 45.833 0.00 0.00 0.00 1.75
4424 6557 4.142160 GCCCTCTTTGGTTCAATGTATTCC 60.142 45.833 0.00 0.00 0.00 3.01
4425 6558 4.402474 CCCTCTTTGGTTCAATGTATTCCC 59.598 45.833 0.00 0.00 0.00 3.97
4426 6559 5.264395 CCTCTTTGGTTCAATGTATTCCCT 58.736 41.667 0.00 0.00 0.00 4.20
4427 6560 5.358160 CCTCTTTGGTTCAATGTATTCCCTC 59.642 44.000 0.00 0.00 0.00 4.30
4428 6561 5.261216 TCTTTGGTTCAATGTATTCCCTCC 58.739 41.667 0.00 0.00 0.00 4.30
4429 6562 3.275617 TGGTTCAATGTATTCCCTCCG 57.724 47.619 0.00 0.00 0.00 4.63
4430 6563 2.574369 TGGTTCAATGTATTCCCTCCGT 59.426 45.455 0.00 0.00 0.00 4.69
4431 6564 3.009695 TGGTTCAATGTATTCCCTCCGTT 59.990 43.478 0.00 0.00 0.00 4.44
4432 6565 4.014406 GGTTCAATGTATTCCCTCCGTTT 58.986 43.478 0.00 0.00 0.00 3.60
4433 6566 4.095932 GGTTCAATGTATTCCCTCCGTTTC 59.904 45.833 0.00 0.00 0.00 2.78
4434 6567 4.561500 TCAATGTATTCCCTCCGTTTCA 57.438 40.909 0.00 0.00 0.00 2.69
4435 6568 4.912586 TCAATGTATTCCCTCCGTTTCAA 58.087 39.130 0.00 0.00 0.00 2.69
4436 6569 5.317808 TCAATGTATTCCCTCCGTTTCAAA 58.682 37.500 0.00 0.00 0.00 2.69
4437 6570 5.770663 TCAATGTATTCCCTCCGTTTCAAAA 59.229 36.000 0.00 0.00 0.00 2.44
4438 6571 6.435904 TCAATGTATTCCCTCCGTTTCAAAAT 59.564 34.615 0.00 0.00 0.00 1.82
4439 6572 7.612244 TCAATGTATTCCCTCCGTTTCAAAATA 59.388 33.333 0.00 0.00 0.00 1.40
4440 6573 6.995511 TGTATTCCCTCCGTTTCAAAATAG 57.004 37.500 0.00 0.00 0.00 1.73
4441 6574 6.713276 TGTATTCCCTCCGTTTCAAAATAGA 58.287 36.000 0.00 0.00 0.00 1.98
4442 6575 7.343357 TGTATTCCCTCCGTTTCAAAATAGAT 58.657 34.615 0.00 0.00 0.00 1.98
4443 6576 6.699575 ATTCCCTCCGTTTCAAAATAGATG 57.300 37.500 0.00 0.00 0.00 2.90
4444 6577 5.429681 TCCCTCCGTTTCAAAATAGATGA 57.570 39.130 0.00 0.00 0.00 2.92
4445 6578 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
4446 6579 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
4447 6580 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
4448 6581 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
4449 6582 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
4450 6583 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
4451 6584 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
4452 6585 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
4453 6586 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
4515 6648 9.893305 AAAGTTGAGTTATCTATTTTGAAACGG 57.107 29.630 0.00 0.00 0.00 4.44
4516 6649 8.842358 AGTTGAGTTATCTATTTTGAAACGGA 57.158 30.769 0.00 0.00 0.00 4.69
4517 6650 8.936864 AGTTGAGTTATCTATTTTGAAACGGAG 58.063 33.333 0.00 0.00 0.00 4.63
4518 6651 8.932791 GTTGAGTTATCTATTTTGAAACGGAGA 58.067 33.333 0.00 0.00 0.00 3.71
4519 6652 9.496873 TTGAGTTATCTATTTTGAAACGGAGAA 57.503 29.630 0.00 0.00 0.00 2.87
4520 6653 9.496873 TGAGTTATCTATTTTGAAACGGAGAAA 57.503 29.630 0.00 0.00 0.00 2.52
4521 6654 9.974750 GAGTTATCTATTTTGAAACGGAGAAAG 57.025 33.333 0.00 0.00 0.00 2.62
4522 6655 9.503399 AGTTATCTATTTTGAAACGGAGAAAGT 57.497 29.630 0.00 0.00 0.00 2.66
4552 6685 1.343142 GAATTTTGGGCCTGTTCGGTT 59.657 47.619 4.53 0.00 34.25 4.44
4553 6686 1.419381 ATTTTGGGCCTGTTCGGTTT 58.581 45.000 4.53 0.00 34.25 3.27
4554 6687 0.461961 TTTTGGGCCTGTTCGGTTTG 59.538 50.000 4.53 0.00 34.25 2.93
4555 6688 0.684805 TTTGGGCCTGTTCGGTTTGT 60.685 50.000 4.53 0.00 34.25 2.83
4556 6689 1.104577 TTGGGCCTGTTCGGTTTGTC 61.105 55.000 4.53 0.00 34.25 3.18
4574 6707 6.258068 GGTTTGTCGGATTAGAACCATAAGAG 59.742 42.308 0.00 0.00 39.56 2.85
4576 6709 6.540438 TGTCGGATTAGAACCATAAGAGTT 57.460 37.500 0.00 0.00 0.00 3.01
4589 6722 5.044624 ACCATAAGAGTTTACCCCTTTACCC 60.045 44.000 0.00 0.00 0.00 3.69
4590 6723 3.708403 AAGAGTTTACCCCTTTACCCG 57.292 47.619 0.00 0.00 0.00 5.28
4591 6724 1.280133 AGAGTTTACCCCTTTACCCGC 59.720 52.381 0.00 0.00 0.00 6.13
4592 6725 0.329261 AGTTTACCCCTTTACCCGCC 59.671 55.000 0.00 0.00 0.00 6.13
4593 6726 0.329261 GTTTACCCCTTTACCCGCCT 59.671 55.000 0.00 0.00 0.00 5.52
4594 6727 1.074766 TTTACCCCTTTACCCGCCTT 58.925 50.000 0.00 0.00 0.00 4.35
4595 6728 1.963985 TTACCCCTTTACCCGCCTTA 58.036 50.000 0.00 0.00 0.00 2.69
4596 6729 1.203237 TACCCCTTTACCCGCCTTAC 58.797 55.000 0.00 0.00 0.00 2.34
4597 6730 0.841594 ACCCCTTTACCCGCCTTACA 60.842 55.000 0.00 0.00 0.00 2.41
4598 6731 0.549469 CCCCTTTACCCGCCTTACAT 59.451 55.000 0.00 0.00 0.00 2.29
4599 6732 1.770061 CCCCTTTACCCGCCTTACATA 59.230 52.381 0.00 0.00 0.00 2.29
4600 6733 2.486013 CCCCTTTACCCGCCTTACATAC 60.486 54.545 0.00 0.00 0.00 2.39
4601 6734 2.171027 CCCTTTACCCGCCTTACATACA 59.829 50.000 0.00 0.00 0.00 2.29
4602 6735 3.370739 CCCTTTACCCGCCTTACATACAA 60.371 47.826 0.00 0.00 0.00 2.41
4603 6736 4.457466 CCTTTACCCGCCTTACATACAAT 58.543 43.478 0.00 0.00 0.00 2.71
4604 6737 4.885325 CCTTTACCCGCCTTACATACAATT 59.115 41.667 0.00 0.00 0.00 2.32
4605 6738 6.056884 CCTTTACCCGCCTTACATACAATTA 58.943 40.000 0.00 0.00 0.00 1.40
4606 6739 6.204108 CCTTTACCCGCCTTACATACAATTAG 59.796 42.308 0.00 0.00 0.00 1.73
4607 6740 6.482898 TTACCCGCCTTACATACAATTAGA 57.517 37.500 0.00 0.00 0.00 2.10
4608 6741 5.362105 ACCCGCCTTACATACAATTAGAA 57.638 39.130 0.00 0.00 0.00 2.10
4609 6742 5.365619 ACCCGCCTTACATACAATTAGAAG 58.634 41.667 0.00 0.00 0.00 2.85
4610 6743 4.755123 CCCGCCTTACATACAATTAGAAGG 59.245 45.833 0.00 0.00 37.17 3.46
4617 6750 9.778741 CCTTACATACAATTAGAAGGCAATAGA 57.221 33.333 0.00 0.00 0.00 1.98
4621 6754 9.632638 ACATACAATTAGAAGGCAATAGAACAT 57.367 29.630 0.00 0.00 0.00 2.71
4625 6758 9.247861 ACAATTAGAAGGCAATAGAACATTTCT 57.752 29.630 0.00 0.00 43.72 2.52
4629 6762 9.912634 TTAGAAGGCAATAGAACATTTCTTTTG 57.087 29.630 12.23 12.23 45.54 2.44
4630 6763 7.955918 AGAAGGCAATAGAACATTTCTTTTGT 58.044 30.769 15.83 2.49 44.98 2.83
4631 6764 8.424133 AGAAGGCAATAGAACATTTCTTTTGTT 58.576 29.630 15.83 7.40 44.98 2.83
4632 6765 8.962884 AAGGCAATAGAACATTTCTTTTGTTT 57.037 26.923 15.83 10.49 44.98 2.83
4633 6766 8.593492 AGGCAATAGAACATTTCTTTTGTTTC 57.407 30.769 15.83 9.25 44.98 2.78
4634 6767 8.203485 AGGCAATAGAACATTTCTTTTGTTTCA 58.797 29.630 15.83 0.00 44.98 2.69
4635 6768 8.275632 GGCAATAGAACATTTCTTTTGTTTCAC 58.724 33.333 15.83 4.29 44.98 3.18
4636 6769 7.998212 GCAATAGAACATTTCTTTTGTTTCACG 59.002 33.333 15.83 0.00 44.98 4.35
4637 6770 9.232082 CAATAGAACATTTCTTTTGTTTCACGA 57.768 29.630 9.62 0.00 41.11 4.35
4638 6771 9.965824 AATAGAACATTTCTTTTGTTTCACGAT 57.034 25.926 0.00 0.00 41.14 3.73
4639 6772 9.965824 ATAGAACATTTCTTTTGTTTCACGATT 57.034 25.926 0.00 0.00 41.14 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.176590 GTCCTCTTTGCGTCATTATGATCTC 59.823 44.000 0.00 0.00 0.00 2.75
1 2 5.053145 GTCCTCTTTGCGTCATTATGATCT 58.947 41.667 0.00 0.00 0.00 2.75
2 3 4.084849 CGTCCTCTTTGCGTCATTATGATC 60.085 45.833 0.00 0.00 0.00 2.92
3 4 3.804325 CGTCCTCTTTGCGTCATTATGAT 59.196 43.478 0.00 0.00 0.00 2.45
6 7 3.187700 GTCGTCCTCTTTGCGTCATTAT 58.812 45.455 0.00 0.00 0.00 1.28
7 8 2.029739 TGTCGTCCTCTTTGCGTCATTA 60.030 45.455 0.00 0.00 0.00 1.90
8 9 1.270094 TGTCGTCCTCTTTGCGTCATT 60.270 47.619 0.00 0.00 0.00 2.57
9 10 0.317160 TGTCGTCCTCTTTGCGTCAT 59.683 50.000 0.00 0.00 0.00 3.06
10 11 0.103390 TTGTCGTCCTCTTTGCGTCA 59.897 50.000 0.00 0.00 0.00 4.35
11 12 1.192534 CTTTGTCGTCCTCTTTGCGTC 59.807 52.381 0.00 0.00 0.00 5.19
12 13 1.217882 CTTTGTCGTCCTCTTTGCGT 58.782 50.000 0.00 0.00 0.00 5.24
13 14 0.110644 GCTTTGTCGTCCTCTTTGCG 60.111 55.000 0.00 0.00 0.00 4.85
14 15 0.238553 GGCTTTGTCGTCCTCTTTGC 59.761 55.000 0.00 0.00 0.00 3.68
15 16 1.593196 TGGCTTTGTCGTCCTCTTTG 58.407 50.000 0.00 0.00 0.00 2.77
16 17 2.154462 CATGGCTTTGTCGTCCTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
17 18 1.347707 TCATGGCTTTGTCGTCCTCTT 59.652 47.619 0.00 0.00 0.00 2.85
18 19 0.976641 TCATGGCTTTGTCGTCCTCT 59.023 50.000 0.00 0.00 0.00 3.69
19 20 1.808411 TTCATGGCTTTGTCGTCCTC 58.192 50.000 0.00 0.00 0.00 3.71
20 21 1.880027 GTTTCATGGCTTTGTCGTCCT 59.120 47.619 0.00 0.00 0.00 3.85
21 22 1.880027 AGTTTCATGGCTTTGTCGTCC 59.120 47.619 0.00 0.00 0.00 4.79
22 23 3.496884 TGTAGTTTCATGGCTTTGTCGTC 59.503 43.478 0.00 0.00 0.00 4.20
23 24 3.472652 TGTAGTTTCATGGCTTTGTCGT 58.527 40.909 0.00 0.00 0.00 4.34
24 25 4.219033 GTTGTAGTTTCATGGCTTTGTCG 58.781 43.478 0.00 0.00 0.00 4.35
25 26 5.181690 TGTTGTAGTTTCATGGCTTTGTC 57.818 39.130 0.00 0.00 0.00 3.18
26 27 5.590530 TTGTTGTAGTTTCATGGCTTTGT 57.409 34.783 0.00 0.00 0.00 2.83
27 28 8.586570 TTAATTGTTGTAGTTTCATGGCTTTG 57.413 30.769 0.00 0.00 0.00 2.77
28 29 9.260002 CTTTAATTGTTGTAGTTTCATGGCTTT 57.740 29.630 0.00 0.00 0.00 3.51
29 30 8.637986 TCTTTAATTGTTGTAGTTTCATGGCTT 58.362 29.630 0.00 0.00 0.00 4.35
30 31 8.177119 TCTTTAATTGTTGTAGTTTCATGGCT 57.823 30.769 0.00 0.00 0.00 4.75
31 32 8.296713 TCTCTTTAATTGTTGTAGTTTCATGGC 58.703 33.333 0.00 0.00 0.00 4.40
32 33 9.612620 GTCTCTTTAATTGTTGTAGTTTCATGG 57.387 33.333 0.00 0.00 0.00 3.66
36 37 9.170584 GCTTGTCTCTTTAATTGTTGTAGTTTC 57.829 33.333 0.00 0.00 0.00 2.78
37 38 8.903820 AGCTTGTCTCTTTAATTGTTGTAGTTT 58.096 29.630 0.00 0.00 0.00 2.66
38 39 8.451908 AGCTTGTCTCTTTAATTGTTGTAGTT 57.548 30.769 0.00 0.00 0.00 2.24
39 40 9.555727 TTAGCTTGTCTCTTTAATTGTTGTAGT 57.444 29.630 0.00 0.00 0.00 2.73
40 41 9.813080 GTTAGCTTGTCTCTTTAATTGTTGTAG 57.187 33.333 0.00 0.00 0.00 2.74
41 42 8.492748 CGTTAGCTTGTCTCTTTAATTGTTGTA 58.507 33.333 0.00 0.00 0.00 2.41
42 43 7.012044 ACGTTAGCTTGTCTCTTTAATTGTTGT 59.988 33.333 0.00 0.00 0.00 3.32
43 44 7.321271 CACGTTAGCTTGTCTCTTTAATTGTTG 59.679 37.037 0.00 0.00 0.00 3.33
44 45 7.352739 CACGTTAGCTTGTCTCTTTAATTGTT 58.647 34.615 0.00 0.00 0.00 2.83
45 46 6.565999 GCACGTTAGCTTGTCTCTTTAATTGT 60.566 38.462 0.00 0.00 0.00 2.71
46 47 5.790495 GCACGTTAGCTTGTCTCTTTAATTG 59.210 40.000 0.00 0.00 0.00 2.32
47 48 5.928153 GCACGTTAGCTTGTCTCTTTAATT 58.072 37.500 0.00 0.00 0.00 1.40
48 49 5.532025 GCACGTTAGCTTGTCTCTTTAAT 57.468 39.130 0.00 0.00 0.00 1.40
49 50 4.985044 GCACGTTAGCTTGTCTCTTTAA 57.015 40.909 0.00 0.00 0.00 1.52
235 236 2.979120 TTGCGGCGTTACAACCCC 60.979 61.111 9.37 0.00 0.00 4.95
236 237 1.858372 ATGTTGCGGCGTTACAACCC 61.858 55.000 20.68 3.74 44.38 4.11
237 238 0.039888 AATGTTGCGGCGTTACAACC 60.040 50.000 20.68 8.20 44.38 3.77
238 239 1.049251 CAATGTTGCGGCGTTACAAC 58.951 50.000 18.00 18.00 45.06 3.32
239 240 0.945099 TCAATGTTGCGGCGTTACAA 59.055 45.000 17.36 7.24 0.00 2.41
240 241 1.135831 CATCAATGTTGCGGCGTTACA 60.136 47.619 16.15 16.15 0.00 2.41
241 242 1.135803 ACATCAATGTTGCGGCGTTAC 60.136 47.619 9.37 7.69 37.90 2.50
242 243 1.129624 GACATCAATGTTGCGGCGTTA 59.870 47.619 9.37 0.00 41.95 3.18
243 244 0.109781 GACATCAATGTTGCGGCGTT 60.110 50.000 9.37 0.00 41.95 4.84
244 245 1.233950 TGACATCAATGTTGCGGCGT 61.234 50.000 9.37 0.00 41.95 5.68
245 246 0.109827 TTGACATCAATGTTGCGGCG 60.110 50.000 0.51 0.51 41.95 6.46
246 247 2.063156 TTTGACATCAATGTTGCGGC 57.937 45.000 0.00 0.00 41.95 6.53
247 248 5.594724 AAAATTTGACATCAATGTTGCGG 57.405 34.783 0.00 0.00 41.95 5.69
338 339 3.065019 GCGTTCTGCTGACAAGAAAAA 57.935 42.857 0.00 0.00 41.73 1.94
366 367 0.324645 GTGGTAGGGGTAGAACCGGA 60.325 60.000 9.46 0.00 39.83 5.14
376 377 1.486145 AAAGGACGTGGTGGTAGGGG 61.486 60.000 0.00 0.00 0.00 4.79
380 381 2.369203 TCATTGAAAGGACGTGGTGGTA 59.631 45.455 0.00 0.00 0.00 3.25
430 449 1.539157 TGGCGTATGGAAAATGTGCA 58.461 45.000 0.00 0.00 0.00 4.57
434 453 5.062058 GTGTTTGATTGGCGTATGGAAAATG 59.938 40.000 0.00 0.00 0.00 2.32
438 457 2.490115 GGTGTTTGATTGGCGTATGGAA 59.510 45.455 0.00 0.00 0.00 3.53
440 459 2.091541 AGGTGTTTGATTGGCGTATGG 58.908 47.619 0.00 0.00 0.00 2.74
442 461 6.524101 AATTAAGGTGTTTGATTGGCGTAT 57.476 33.333 0.00 0.00 0.00 3.06
446 465 9.135843 GTAAGTAAATTAAGGTGTTTGATTGGC 57.864 33.333 0.00 0.00 0.00 4.52
455 474 9.524106 GTGCAAAAAGTAAGTAAATTAAGGTGT 57.476 29.630 0.00 0.00 0.00 4.16
458 477 9.535878 TTGGTGCAAAAAGTAAGTAAATTAAGG 57.464 29.630 0.00 0.00 0.00 2.69
472 491 4.057432 CAAGGTGGTATTGGTGCAAAAAG 58.943 43.478 0.00 0.00 0.00 2.27
473 492 3.706594 TCAAGGTGGTATTGGTGCAAAAA 59.293 39.130 0.00 0.00 0.00 1.94
476 495 2.666272 TCAAGGTGGTATTGGTGCAA 57.334 45.000 0.00 0.00 0.00 4.08
481 500 7.931578 TGTAAGTAAATCAAGGTGGTATTGG 57.068 36.000 0.00 0.00 0.00 3.16
486 505 5.381757 TGCTTGTAAGTAAATCAAGGTGGT 58.618 37.500 0.00 0.00 38.93 4.16
503 522 9.142515 CATGTGATTGTGTAAATAAATGCTTGT 57.857 29.630 0.00 0.00 0.00 3.16
504 523 8.111836 GCATGTGATTGTGTAAATAAATGCTTG 58.888 33.333 0.00 0.00 35.11 4.01
507 526 7.254185 CCTGCATGTGATTGTGTAAATAAATGC 60.254 37.037 0.00 0.00 37.72 3.56
543 597 9.365906 TGTGATTTATCTGCCCATGTTAAATAT 57.634 29.630 0.00 0.00 0.00 1.28
544 598 8.759481 TGTGATTTATCTGCCCATGTTAAATA 57.241 30.769 0.00 0.00 0.00 1.40
545 599 7.658525 TGTGATTTATCTGCCCATGTTAAAT 57.341 32.000 0.00 0.00 0.00 1.40
575 629 9.774413 CTCCGTCCCATAATATAAGTACTTTTT 57.226 33.333 14.49 8.19 0.00 1.94
576 630 8.373220 CCTCCGTCCCATAATATAAGTACTTTT 58.627 37.037 14.49 8.69 0.00 2.27
577 631 7.038516 CCCTCCGTCCCATAATATAAGTACTTT 60.039 40.741 14.49 4.61 0.00 2.66
578 632 6.439692 CCCTCCGTCCCATAATATAAGTACTT 59.560 42.308 13.68 13.68 0.00 2.24
579 633 5.956563 CCCTCCGTCCCATAATATAAGTACT 59.043 44.000 0.00 0.00 0.00 2.73
580 634 5.954150 TCCCTCCGTCCCATAATATAAGTAC 59.046 44.000 0.00 0.00 0.00 2.73
581 635 6.156554 TCCCTCCGTCCCATAATATAAGTA 57.843 41.667 0.00 0.00 0.00 2.24
582 636 5.019657 TCCCTCCGTCCCATAATATAAGT 57.980 43.478 0.00 0.00 0.00 2.24
583 637 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
584 638 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
585 639 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
586 640 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
587 641 3.245514 CCTACTCCCTCCGTCCCATAATA 60.246 52.174 0.00 0.00 0.00 0.98
588 642 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
589 643 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
590 644 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
591 645 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
592 646 1.512201 TTCCTACTCCCTCCGTCCCA 61.512 60.000 0.00 0.00 0.00 4.37
593 647 0.325016 TTTCCTACTCCCTCCGTCCC 60.325 60.000 0.00 0.00 0.00 4.46
594 648 1.790818 ATTTCCTACTCCCTCCGTCC 58.209 55.000 0.00 0.00 0.00 4.79
595 649 4.648307 TCTTTATTTCCTACTCCCTCCGTC 59.352 45.833 0.00 0.00 0.00 4.79
596 650 4.617593 TCTTTATTTCCTACTCCCTCCGT 58.382 43.478 0.00 0.00 0.00 4.69
597 651 5.609533 TTCTTTATTTCCTACTCCCTCCG 57.390 43.478 0.00 0.00 0.00 4.63
598 652 7.173032 TGTTTTCTTTATTTCCTACTCCCTCC 58.827 38.462 0.00 0.00 0.00 4.30
599 653 8.631480 TTGTTTTCTTTATTTCCTACTCCCTC 57.369 34.615 0.00 0.00 0.00 4.30
600 654 9.078990 CTTTGTTTTCTTTATTTCCTACTCCCT 57.921 33.333 0.00 0.00 0.00 4.20
601 655 9.074576 TCTTTGTTTTCTTTATTTCCTACTCCC 57.925 33.333 0.00 0.00 0.00 4.30
613 667 6.928492 GGTTGCCATCATCTTTGTTTTCTTTA 59.072 34.615 0.00 0.00 0.00 1.85
647 701 4.776837 TGGGATTTACTGCCAAAATGTGAT 59.223 37.500 0.00 0.00 43.32 3.06
684 805 2.342910 TTTTACTCTGCGGACGAGAC 57.657 50.000 9.63 0.00 32.87 3.36
685 806 2.876091 CATTTTACTCTGCGGACGAGA 58.124 47.619 9.63 0.00 32.87 4.04
686 807 1.324736 GCATTTTACTCTGCGGACGAG 59.675 52.381 0.00 2.70 34.70 4.18
687 808 1.337354 TGCATTTTACTCTGCGGACGA 60.337 47.619 0.00 0.00 41.32 4.20
688 809 1.075542 TGCATTTTACTCTGCGGACG 58.924 50.000 0.00 0.00 41.32 4.79
689 810 3.234386 GTTTGCATTTTACTCTGCGGAC 58.766 45.455 0.00 0.00 41.32 4.79
690 811 2.095969 CGTTTGCATTTTACTCTGCGGA 60.096 45.455 0.00 0.00 41.32 5.54
790 914 0.318614 GTGGTGGTGATTTGCGGTTG 60.319 55.000 0.00 0.00 0.00 3.77
818 942 2.592459 CGGGTTCGAAATTTGAAATCGC 59.408 45.455 0.00 0.00 39.00 4.58
875 1000 3.504520 GTGAGCGGAGTTTTATTTGGGAA 59.495 43.478 0.00 0.00 0.00 3.97
877 1002 2.163613 GGTGAGCGGAGTTTTATTTGGG 59.836 50.000 0.00 0.00 0.00 4.12
940 1065 3.707189 GGGGAGGAGGAAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
992 1119 2.940890 GATTTCCCTCATGGCGGCGA 62.941 60.000 12.98 0.00 0.00 5.54
1380 1744 1.209504 GGTATACCTTGCAGGCAGTCA 59.790 52.381 15.09 0.00 39.63 3.41
1450 1814 0.607620 CCACACGCCCCAAAATCATT 59.392 50.000 0.00 0.00 0.00 2.57
1468 1832 0.545646 AGAAGAAGGGCAGCAGATCC 59.454 55.000 0.00 0.00 0.00 3.36
1500 1869 8.916654 CAGTAATCGTAATAGCATTCTAACAGG 58.083 37.037 0.00 0.00 0.00 4.00
1534 1903 2.050895 CGGCCAGATCTACGAGCG 60.051 66.667 2.24 0.00 0.00 5.03
1613 1982 2.031870 TGTATCCTGATCGGGTGAGTG 58.968 52.381 20.32 0.00 0.00 3.51
1631 2000 4.292186 AGACAAGCATAATGGACAGTGT 57.708 40.909 0.00 0.00 0.00 3.55
1661 2057 0.322546 ACCATCCAAAACGCCTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
1669 2065 6.530019 AGATCCACATAAACCATCCAAAAC 57.470 37.500 0.00 0.00 0.00 2.43
1707 2103 3.396560 TCGAATCCATGCTGCTATTCTG 58.603 45.455 0.00 3.23 0.00 3.02
1708 2104 3.758755 TCGAATCCATGCTGCTATTCT 57.241 42.857 0.00 0.00 0.00 2.40
1718 2114 5.752472 GGAGCAGACATATATCGAATCCATG 59.248 44.000 0.00 0.00 0.00 3.66
1731 2127 2.831685 ACAACAACGGAGCAGACATA 57.168 45.000 0.00 0.00 0.00 2.29
1741 2137 1.011333 ACACGAGGAAACAACAACGG 58.989 50.000 0.00 0.00 0.00 4.44
1743 2139 5.607119 ATCATACACGAGGAAACAACAAC 57.393 39.130 0.00 0.00 0.00 3.32
1751 2147 6.735968 GCAGTTGATCTATCATACACGAGGAA 60.736 42.308 0.00 0.00 36.56 3.36
1755 2151 5.514274 TGCAGTTGATCTATCATACACGA 57.486 39.130 0.00 0.00 36.56 4.35
1781 2177 1.030457 ATACAGGTAGAAGGCCGACG 58.970 55.000 0.00 0.00 0.00 5.12
1784 2180 4.079970 TCTATCATACAGGTAGAAGGCCG 58.920 47.826 0.00 0.00 0.00 6.13
1793 2189 5.830799 TGCAATGGATCTATCATACAGGT 57.169 39.130 0.00 0.00 0.00 4.00
1795 2191 7.916914 TGAATGCAATGGATCTATCATACAG 57.083 36.000 0.00 0.00 0.00 2.74
1831 2227 0.902984 TGCACTGGGACCTCATACGT 60.903 55.000 0.00 0.00 0.00 3.57
1837 2233 1.211457 AGATGAATGCACTGGGACCTC 59.789 52.381 0.00 0.00 0.00 3.85
1838 2234 1.064906 CAGATGAATGCACTGGGACCT 60.065 52.381 0.00 0.00 0.00 3.85
1840 2236 1.386533 CCAGATGAATGCACTGGGAC 58.613 55.000 11.57 0.00 44.96 4.46
1841 2237 3.888424 CCAGATGAATGCACTGGGA 57.112 52.632 11.57 0.00 44.96 4.37
1854 2251 5.744171 TCACACATAAGTATGCAACCAGAT 58.256 37.500 0.00 0.00 37.19 2.90
1902 2303 4.019231 TCAGCAGAGTAGTAGAGAGTGGAA 60.019 45.833 0.00 0.00 0.00 3.53
1968 2369 3.648009 GCATCAGACATGCTACTCTACC 58.352 50.000 0.00 0.00 41.52 3.18
1989 2390 3.405831 TCACTGGTGCTTGAGAAATCAG 58.594 45.455 0.00 0.00 0.00 2.90
2013 2414 3.701205 TCCACACACATCACTAAGCAT 57.299 42.857 0.00 0.00 0.00 3.79
2037 2438 3.387374 AGCATGCTACTCTACTGATGCTT 59.613 43.478 21.21 0.00 42.98 3.91
2058 2459 4.240096 GTGCTTGGGAAATCAACATCAAG 58.760 43.478 0.00 0.00 35.90 3.02
2059 2460 3.006752 GGTGCTTGGGAAATCAACATCAA 59.993 43.478 0.00 0.00 0.00 2.57
2067 2468 1.815003 CTCACTGGTGCTTGGGAAATC 59.185 52.381 0.00 0.00 0.00 2.17
2073 2474 1.970114 CAGGCTCACTGGTGCTTGG 60.970 63.158 0.00 0.00 43.70 3.61
2084 2485 1.625315 ACACATCACTAAGCAGGCTCA 59.375 47.619 0.00 0.00 0.00 4.26
2086 2487 1.349026 ACACACATCACTAAGCAGGCT 59.651 47.619 0.00 0.00 0.00 4.58
2108 2509 2.309528 AATCGACCGATGCTTTGCTA 57.690 45.000 5.62 0.00 34.70 3.49
2110 2511 1.333258 GCTAATCGACCGATGCTTTGC 60.333 52.381 5.62 1.00 34.70 3.68
2123 2676 2.874086 TCAACATCAGGCATGCTAATCG 59.126 45.455 18.92 6.53 35.65 3.34
2126 2679 4.951715 AGAAATCAACATCAGGCATGCTAA 59.048 37.500 18.92 3.53 35.65 3.09
2135 2688 4.216902 TGGTGCTTGAGAAATCAACATCAG 59.783 41.667 0.00 0.00 0.00 2.90
2195 2748 4.085357 TCCACACACATAGAGCAAACTT 57.915 40.909 0.00 0.00 0.00 2.66
2255 2809 4.181578 CACTAGAATAAACAGGTGACCGG 58.818 47.826 0.00 0.00 0.00 5.28
2256 2810 4.817517 ACACTAGAATAAACAGGTGACCG 58.182 43.478 0.00 0.00 0.00 4.79
2260 2814 8.827177 TCAGTTTACACTAGAATAAACAGGTG 57.173 34.615 23.40 17.09 41.65 4.00
2261 2815 9.841295 TTTCAGTTTACACTAGAATAAACAGGT 57.159 29.630 23.40 10.02 41.65 4.00
2273 2827 9.739276 ATTTGGATCTCATTTCAGTTTACACTA 57.261 29.630 0.00 0.00 0.00 2.74
2299 2853 9.226606 CTGTGGTAGATGAAAAACATAGGTTAA 57.773 33.333 0.00 0.00 39.56 2.01
2309 2863 7.505585 ACTTGAAATCCTGTGGTAGATGAAAAA 59.494 33.333 0.00 0.00 0.00 1.94
2312 2866 6.126863 ACTTGAAATCCTGTGGTAGATGAA 57.873 37.500 0.00 0.00 0.00 2.57
2336 2910 0.906756 CTCCTCCCAGAGAGTGGCAA 60.907 60.000 0.00 0.00 46.45 4.52
2649 3511 9.997482 GGTATGTTGTATTTGTAATTACTGGTG 57.003 33.333 16.33 0.00 0.00 4.17
2650 3512 8.885722 CGGTATGTTGTATTTGTAATTACTGGT 58.114 33.333 16.33 5.09 0.00 4.00
2727 3615 6.205270 ACCGGAAAACAAGAACAACGTTATAT 59.795 34.615 9.46 0.00 0.00 0.86
2751 3661 2.679837 CAAGTGTCAGCCATATCACCAC 59.320 50.000 0.00 0.00 0.00 4.16
2770 3680 7.051623 AGTATCAAAACCACAGTAGAACACAA 58.948 34.615 0.00 0.00 0.00 3.33
2774 3684 6.017440 TGCAAGTATCAAAACCACAGTAGAAC 60.017 38.462 0.00 0.00 0.00 3.01
2778 3688 6.000840 TCATGCAAGTATCAAAACCACAGTA 58.999 36.000 0.00 0.00 0.00 2.74
2797 3708 8.285394 ACTACATGTGAAATCGATAATTCATGC 58.715 33.333 21.89 11.01 37.82 4.06
2828 3744 3.766068 ATCACCAGATCATGCAGGTAG 57.234 47.619 0.00 0.00 32.01 3.18
2949 4691 9.097257 GATCACCAACTGAAAAATGAAAGAAAA 57.903 29.630 0.00 0.00 30.60 2.29
2998 5017 0.250467 AGCAAGTGACACCGCTCATT 60.250 50.000 13.03 0.00 31.70 2.57
3502 5521 0.037877 CCATCTCATCCATGCCCTCC 59.962 60.000 0.00 0.00 0.00 4.30
3535 5554 2.606725 CAGATCGTTCATGTTGCTCTCC 59.393 50.000 0.00 0.00 0.00 3.71
3657 5679 1.059098 AACAGACAGCAGGATGACCA 58.941 50.000 0.00 0.00 39.69 4.02
3662 5684 4.262808 GGCATATCTAACAGACAGCAGGAT 60.263 45.833 0.00 0.00 0.00 3.24
3675 5697 8.836413 GCAATAGTAAACACAAGGCATATCTAA 58.164 33.333 0.00 0.00 0.00 2.10
3749 5771 6.688813 GCAGCAAAAGCATCTATAAGTGTTAC 59.311 38.462 0.00 0.00 0.00 2.50
3808 5830 7.386299 GCATAAAACCACCATCAACATACAAAA 59.614 33.333 0.00 0.00 0.00 2.44
3809 5831 6.870965 GCATAAAACCACCATCAACATACAAA 59.129 34.615 0.00 0.00 0.00 2.83
3810 5832 6.393990 GCATAAAACCACCATCAACATACAA 58.606 36.000 0.00 0.00 0.00 2.41
3811 5833 5.392487 CGCATAAAACCACCATCAACATACA 60.392 40.000 0.00 0.00 0.00 2.29
3838 5860 4.745125 CCCACAGTTACGCTAATATCACAG 59.255 45.833 0.00 0.00 0.00 3.66
3861 5887 3.129638 TGCCAAATTTACGGGTATCAAGC 59.870 43.478 0.00 0.00 0.00 4.01
3870 5896 8.591312 CACAAAATATAGTTGCCAAATTTACGG 58.409 33.333 0.00 0.00 0.00 4.02
3879 5905 6.892658 AACAGACACAAAATATAGTTGCCA 57.107 33.333 0.00 0.00 0.00 4.92
3882 5908 9.950680 ACAGAAAACAGACACAAAATATAGTTG 57.049 29.630 0.00 0.00 0.00 3.16
3904 5930 2.516906 TCATGAGCCAAAATGCACAGA 58.483 42.857 0.00 0.00 35.33 3.41
3922 5948 9.695526 CAACAATAGGTCAAATTTCAGAAATCA 57.304 29.630 8.90 0.00 0.00 2.57
3938 6003 4.685628 CGAAAATTTGCAGCAACAATAGGT 59.314 37.500 7.54 0.00 0.00 3.08
3939 6004 4.434593 GCGAAAATTTGCAGCAACAATAGG 60.435 41.667 7.54 0.00 37.52 2.57
3986 6051 4.035441 GCTCGGAGTATACGACTTCTCTTT 59.965 45.833 6.90 0.00 39.06 2.52
3989 6054 2.871022 TGCTCGGAGTATACGACTTCTC 59.129 50.000 6.90 0.00 39.06 2.87
3995 6060 3.465742 ACTAGTGCTCGGAGTATACGA 57.534 47.619 6.90 0.00 38.79 3.43
3996 6061 3.558829 TCAACTAGTGCTCGGAGTATACG 59.441 47.826 6.90 0.00 0.00 3.06
4001 6075 2.563179 ACAATCAACTAGTGCTCGGAGT 59.437 45.455 6.90 0.00 0.00 3.85
4004 6078 4.433615 ACATACAATCAACTAGTGCTCGG 58.566 43.478 0.00 0.00 0.00 4.63
4026 6100 2.176798 ACACAGGATGAAACCCCAAGAA 59.823 45.455 0.00 0.00 39.69 2.52
4047 6132 6.098838 ACATACTGAGATACTTGGATTGCTCA 59.901 38.462 0.00 0.00 0.00 4.26
4073 6158 2.961062 ACCGTCTGTAGTAAACCAGTGT 59.039 45.455 0.00 0.00 0.00 3.55
4083 6171 1.337823 GCACATCCAACCGTCTGTAGT 60.338 52.381 0.00 0.00 0.00 2.73
4089 6177 2.100631 CGAGGCACATCCAACCGTC 61.101 63.158 0.00 0.00 37.29 4.79
4091 6179 3.499737 GCGAGGCACATCCAACCG 61.500 66.667 0.00 0.00 37.29 4.44
4096 6184 1.078848 ACAGAAGCGAGGCACATCC 60.079 57.895 0.00 0.00 0.00 3.51
4097 6185 0.390340 TGACAGAAGCGAGGCACATC 60.390 55.000 0.00 0.00 0.00 3.06
4100 6188 2.029844 GGTGACAGAAGCGAGGCAC 61.030 63.158 0.00 0.00 0.00 5.01
4121 6209 5.281727 GGACTTTTCCAGTGAAACAACATC 58.718 41.667 0.00 0.00 42.30 3.06
4141 6274 0.245813 AGTTAAACGAGCCGAGGGAC 59.754 55.000 1.50 0.00 0.00 4.46
4142 6275 0.529378 GAGTTAAACGAGCCGAGGGA 59.471 55.000 1.50 0.00 0.00 4.20
4143 6276 0.531200 AGAGTTAAACGAGCCGAGGG 59.469 55.000 1.50 0.00 0.00 4.30
4144 6277 1.473278 AGAGAGTTAAACGAGCCGAGG 59.527 52.381 1.50 0.00 0.00 4.63
4145 6278 2.520979 CAGAGAGTTAAACGAGCCGAG 58.479 52.381 1.50 0.00 0.00 4.63
4146 6279 1.201647 CCAGAGAGTTAAACGAGCCGA 59.798 52.381 1.50 0.00 0.00 5.54
4147 6280 1.067776 ACCAGAGAGTTAAACGAGCCG 60.068 52.381 0.00 0.00 0.00 5.52
4148 6281 2.737252 CAACCAGAGAGTTAAACGAGCC 59.263 50.000 0.00 0.00 0.00 4.70
4149 6282 2.737252 CCAACCAGAGAGTTAAACGAGC 59.263 50.000 0.00 0.00 0.00 5.03
4150 6283 4.252971 TCCAACCAGAGAGTTAAACGAG 57.747 45.455 0.00 0.00 0.00 4.18
4151 6284 4.562757 CCATCCAACCAGAGAGTTAAACGA 60.563 45.833 0.00 0.00 0.00 3.85
4152 6285 3.684788 CCATCCAACCAGAGAGTTAAACG 59.315 47.826 0.00 0.00 0.00 3.60
4153 6286 4.652822 ACCATCCAACCAGAGAGTTAAAC 58.347 43.478 0.00 0.00 0.00 2.01
4154 6287 4.993705 ACCATCCAACCAGAGAGTTAAA 57.006 40.909 0.00 0.00 0.00 1.52
4155 6288 4.993705 AACCATCCAACCAGAGAGTTAA 57.006 40.909 0.00 0.00 0.00 2.01
4156 6289 4.506625 CCAAACCATCCAACCAGAGAGTTA 60.507 45.833 0.00 0.00 0.00 2.24
4157 6290 3.490348 CAAACCATCCAACCAGAGAGTT 58.510 45.455 0.00 0.00 0.00 3.01
4158 6291 2.224867 CCAAACCATCCAACCAGAGAGT 60.225 50.000 0.00 0.00 0.00 3.24
4159 6292 2.224867 ACCAAACCATCCAACCAGAGAG 60.225 50.000 0.00 0.00 0.00 3.20
4160 6293 1.780309 ACCAAACCATCCAACCAGAGA 59.220 47.619 0.00 0.00 0.00 3.10
4161 6294 2.292828 ACCAAACCATCCAACCAGAG 57.707 50.000 0.00 0.00 0.00 3.35
4162 6295 2.765689 AACCAAACCATCCAACCAGA 57.234 45.000 0.00 0.00 0.00 3.86
4163 6296 3.831911 ACATAACCAAACCATCCAACCAG 59.168 43.478 0.00 0.00 0.00 4.00
4164 6297 3.850752 ACATAACCAAACCATCCAACCA 58.149 40.909 0.00 0.00 0.00 3.67
4165 6298 4.562552 CCAACATAACCAAACCATCCAACC 60.563 45.833 0.00 0.00 0.00 3.77
4166 6299 4.039852 ACCAACATAACCAAACCATCCAAC 59.960 41.667 0.00 0.00 0.00 3.77
4167 6300 4.227197 ACCAACATAACCAAACCATCCAA 58.773 39.130 0.00 0.00 0.00 3.53
4168 6301 3.850752 ACCAACATAACCAAACCATCCA 58.149 40.909 0.00 0.00 0.00 3.41
4169 6302 4.562552 CCAACCAACATAACCAAACCATCC 60.563 45.833 0.00 0.00 0.00 3.51
4170 6303 4.282195 TCCAACCAACATAACCAAACCATC 59.718 41.667 0.00 0.00 0.00 3.51
4171 6304 4.227197 TCCAACCAACATAACCAAACCAT 58.773 39.130 0.00 0.00 0.00 3.55
4172 6305 3.643237 TCCAACCAACATAACCAAACCA 58.357 40.909 0.00 0.00 0.00 3.67
4173 6306 4.882842 ATCCAACCAACATAACCAAACC 57.117 40.909 0.00 0.00 0.00 3.27
4174 6307 6.312672 GCATAATCCAACCAACATAACCAAAC 59.687 38.462 0.00 0.00 0.00 2.93
4175 6308 6.212388 AGCATAATCCAACCAACATAACCAAA 59.788 34.615 0.00 0.00 0.00 3.28
4176 6309 5.719085 AGCATAATCCAACCAACATAACCAA 59.281 36.000 0.00 0.00 0.00 3.67
4177 6310 5.268387 AGCATAATCCAACCAACATAACCA 58.732 37.500 0.00 0.00 0.00 3.67
4178 6311 5.852282 AGCATAATCCAACCAACATAACC 57.148 39.130 0.00 0.00 0.00 2.85
4179 6312 6.042143 CCAAGCATAATCCAACCAACATAAC 58.958 40.000 0.00 0.00 0.00 1.89
4180 6313 5.719085 ACCAAGCATAATCCAACCAACATAA 59.281 36.000 0.00 0.00 0.00 1.90
4181 6314 5.126869 CACCAAGCATAATCCAACCAACATA 59.873 40.000 0.00 0.00 0.00 2.29
4182 6315 4.081531 CACCAAGCATAATCCAACCAACAT 60.082 41.667 0.00 0.00 0.00 2.71
4183 6316 3.257873 CACCAAGCATAATCCAACCAACA 59.742 43.478 0.00 0.00 0.00 3.33
4184 6317 3.368323 CCACCAAGCATAATCCAACCAAC 60.368 47.826 0.00 0.00 0.00 3.77
4185 6318 2.830923 CCACCAAGCATAATCCAACCAA 59.169 45.455 0.00 0.00 0.00 3.67
4186 6319 2.455557 CCACCAAGCATAATCCAACCA 58.544 47.619 0.00 0.00 0.00 3.67
4187 6320 1.136891 GCCACCAAGCATAATCCAACC 59.863 52.381 0.00 0.00 0.00 3.77
4188 6321 2.102578 AGCCACCAAGCATAATCCAAC 58.897 47.619 0.00 0.00 34.23 3.77
4189 6322 2.530460 AGCCACCAAGCATAATCCAA 57.470 45.000 0.00 0.00 34.23 3.53
4190 6323 2.530460 AAGCCACCAAGCATAATCCA 57.470 45.000 0.00 0.00 34.23 3.41
4191 6324 5.535753 AATAAAGCCACCAAGCATAATCC 57.464 39.130 0.00 0.00 34.23 3.01
4245 6378 3.252554 TGGTGTAGCCAAGGGATTTTT 57.747 42.857 0.00 0.00 45.94 1.94
4246 6379 2.990740 TGGTGTAGCCAAGGGATTTT 57.009 45.000 0.00 0.00 45.94 1.82
4274 6407 6.719370 AGAGCAACCCATAGTTTATTTTCACA 59.281 34.615 0.00 0.00 36.18 3.58
4348 6481 6.552445 TGGAAAAATCTCCCAAAAGTTCAA 57.448 33.333 0.00 0.00 34.22 2.69
4419 6552 7.497909 GTCATCTATTTTGAAACGGAGGGAATA 59.502 37.037 0.00 0.00 0.00 1.75
4420 6553 6.318900 GTCATCTATTTTGAAACGGAGGGAAT 59.681 38.462 0.00 0.00 0.00 3.01
4421 6554 5.646360 GTCATCTATTTTGAAACGGAGGGAA 59.354 40.000 0.00 0.00 0.00 3.97
4422 6555 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
4423 6556 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
4424 6557 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
4425 6558 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
4426 6559 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
4427 6560 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
4489 6622 9.893305 CCGTTTCAAAATAGATAACTCAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
4490 6623 9.280174 TCCGTTTCAAAATAGATAACTCAACTT 57.720 29.630 0.00 0.00 0.00 2.66
4491 6624 8.842358 TCCGTTTCAAAATAGATAACTCAACT 57.158 30.769 0.00 0.00 0.00 3.16
4492 6625 8.932791 TCTCCGTTTCAAAATAGATAACTCAAC 58.067 33.333 0.00 0.00 0.00 3.18
4493 6626 9.496873 TTCTCCGTTTCAAAATAGATAACTCAA 57.503 29.630 0.00 0.00 0.00 3.02
4494 6627 9.496873 TTTCTCCGTTTCAAAATAGATAACTCA 57.503 29.630 0.00 0.00 0.00 3.41
4495 6628 9.974750 CTTTCTCCGTTTCAAAATAGATAACTC 57.025 33.333 0.00 0.00 0.00 3.01
4496 6629 9.503399 ACTTTCTCCGTTTCAAAATAGATAACT 57.497 29.630 0.00 0.00 0.00 2.24
4506 6639 9.724839 CTTGTAAATTACTTTCTCCGTTTCAAA 57.275 29.630 4.67 0.00 0.00 2.69
4507 6640 9.111613 TCTTGTAAATTACTTTCTCCGTTTCAA 57.888 29.630 4.67 0.00 0.00 2.69
4508 6641 8.665643 TCTTGTAAATTACTTTCTCCGTTTCA 57.334 30.769 4.67 0.00 0.00 2.69
4516 6649 9.489084 GCCCAAAATTCTTGTAAATTACTTTCT 57.511 29.630 4.67 0.00 0.00 2.52
4517 6650 8.717821 GGCCCAAAATTCTTGTAAATTACTTTC 58.282 33.333 4.67 0.00 0.00 2.62
4518 6651 8.436778 AGGCCCAAAATTCTTGTAAATTACTTT 58.563 29.630 0.00 0.00 0.00 2.66
4519 6652 7.877612 CAGGCCCAAAATTCTTGTAAATTACTT 59.122 33.333 0.00 0.00 0.00 2.24
4520 6653 7.016170 ACAGGCCCAAAATTCTTGTAAATTACT 59.984 33.333 0.00 0.00 0.00 2.24
4521 6654 7.158697 ACAGGCCCAAAATTCTTGTAAATTAC 58.841 34.615 0.00 0.00 0.00 1.89
4522 6655 7.309770 ACAGGCCCAAAATTCTTGTAAATTA 57.690 32.000 0.00 0.00 0.00 1.40
4552 6685 6.540438 ACTCTTATGGTTCTAATCCGACAA 57.460 37.500 0.00 0.00 0.00 3.18
4553 6686 6.540438 AACTCTTATGGTTCTAATCCGACA 57.460 37.500 0.00 0.00 0.00 4.35
4554 6687 7.437565 GGTAAACTCTTATGGTTCTAATCCGAC 59.562 40.741 0.00 0.00 0.00 4.79
4555 6688 7.418254 GGGTAAACTCTTATGGTTCTAATCCGA 60.418 40.741 0.00 0.00 0.00 4.55
4556 6689 6.704937 GGGTAAACTCTTATGGTTCTAATCCG 59.295 42.308 0.00 0.00 0.00 4.18
4574 6707 0.329261 AGGCGGGTAAAGGGGTAAAC 59.671 55.000 0.00 0.00 0.00 2.01
4576 6709 1.559219 GTAAGGCGGGTAAAGGGGTAA 59.441 52.381 0.00 0.00 0.00 2.85
4589 6722 5.344207 GCCTTCTAATTGTATGTAAGGCG 57.656 43.478 8.03 0.00 46.62 5.52
4591 6724 9.778741 TCTATTGCCTTCTAATTGTATGTAAGG 57.221 33.333 0.00 0.00 37.21 2.69
4595 6728 9.632638 ATGTTCTATTGCCTTCTAATTGTATGT 57.367 29.630 0.00 0.00 0.00 2.29
4599 6732 9.247861 AGAAATGTTCTATTGCCTTCTAATTGT 57.752 29.630 0.00 0.00 38.49 2.71
4603 6736 9.912634 CAAAAGAAATGTTCTATTGCCTTCTAA 57.087 29.630 0.00 0.00 39.61 2.10
4604 6737 9.077885 ACAAAAGAAATGTTCTATTGCCTTCTA 57.922 29.630 0.00 0.00 39.61 2.10
4605 6738 7.955918 ACAAAAGAAATGTTCTATTGCCTTCT 58.044 30.769 0.00 0.00 39.61 2.85
4606 6739 8.593492 AACAAAAGAAATGTTCTATTGCCTTC 57.407 30.769 0.00 0.00 39.61 3.46
4607 6740 8.962884 AAACAAAAGAAATGTTCTATTGCCTT 57.037 26.923 0.00 0.00 39.98 4.35
4608 6741 8.203485 TGAAACAAAAGAAATGTTCTATTGCCT 58.797 29.630 0.00 0.00 39.98 4.75
4609 6742 8.275632 GTGAAACAAAAGAAATGTTCTATTGCC 58.724 33.333 0.00 0.00 39.98 4.52
4610 6743 7.998212 CGTGAAACAAAAGAAATGTTCTATTGC 59.002 33.333 0.00 0.00 39.98 3.56
4611 6744 9.232082 TCGTGAAACAAAAGAAATGTTCTATTG 57.768 29.630 0.00 0.00 39.98 1.90
4612 6745 9.965824 ATCGTGAAACAAAAGAAATGTTCTATT 57.034 25.926 0.00 0.00 39.98 1.73
4613 6746 9.965824 AATCGTGAAACAAAAGAAATGTTCTAT 57.034 25.926 0.00 0.00 39.98 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.