Multiple sequence alignment - TraesCS6D01G129700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G129700 chr6D 100.000 3410 0 0 1 3410 95250775 95247366 0.000000e+00 6298
1 TraesCS6D01G129700 chr6A 91.133 3000 202 32 1 2959 114267264 114270240 0.000000e+00 4008
2 TraesCS6D01G129700 chr6A 93.485 307 5 3 3104 3410 114270344 114270635 3.120000e-120 442
3 TraesCS6D01G129700 chr6B 93.239 2766 97 25 673 3410 177792966 177795669 0.000000e+00 3989
4 TraesCS6D01G129700 chr6B 86.834 638 79 3 1 634 177787198 177787834 0.000000e+00 708
5 TraesCS6D01G129700 chr2D 87.199 1039 83 25 1768 2802 118403634 118404626 0.000000e+00 1136
6 TraesCS6D01G129700 chr2D 89.888 801 62 4 1088 1872 118386242 118387039 0.000000e+00 1013
7 TraesCS6D01G129700 chr2D 88.627 466 38 7 1687 2148 118402528 118402982 1.380000e-153 553
8 TraesCS6D01G129700 chr2D 88.197 466 40 7 1687 2148 118400946 118401400 2.990000e-150 542
9 TraesCS6D01G129700 chr2D 87.768 466 42 7 1687 2148 118389933 118390387 6.480000e-147 531
10 TraesCS6D01G129700 chr2D 87.609 460 42 7 1692 2148 118389052 118389499 1.400000e-143 520
11 TraesCS6D01G129700 chr2D 87.146 459 46 5 1692 2148 118389496 118389943 3.040000e-140 508
12 TraesCS6D01G129700 chr2D 87.229 415 38 7 1736 2147 118388211 118388613 3.100000e-125 459
13 TraesCS6D01G129700 chr2D 88.251 383 32 5 1767 2147 118402166 118402537 2.410000e-121 446
14 TraesCS6D01G129700 chr2D 85.246 244 25 4 1905 2148 118400724 118400956 1.220000e-59 241
15 TraesCS6D01G129700 chr7D 77.023 309 32 24 2014 2290 572539156 572539457 1.280000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G129700 chr6D 95247366 95250775 3409 True 6298.0 6298 100.000 1 3410 1 chr6D.!!$R1 3409
1 TraesCS6D01G129700 chr6A 114267264 114270635 3371 False 2225.0 4008 92.309 1 3410 2 chr6A.!!$F1 3409
2 TraesCS6D01G129700 chr6B 177792966 177795669 2703 False 3989.0 3989 93.239 673 3410 1 chr6B.!!$F2 2737
3 TraesCS6D01G129700 chr6B 177787198 177787834 636 False 708.0 708 86.834 1 634 1 chr6B.!!$F1 633
4 TraesCS6D01G129700 chr2D 118386242 118390387 4145 False 606.2 1013 87.928 1088 2148 5 chr2D.!!$F1 1060
5 TraesCS6D01G129700 chr2D 118400724 118404626 3902 False 583.6 1136 87.504 1687 2802 5 chr2D.!!$F2 1115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 504 0.029567 GGTCGGAGATAGCGTGACAG 59.970 60.0 3.44 0.0 40.67 3.51 F
659 673 0.250234 TTATCACTGCCGCTTGCTCT 59.750 50.0 0.00 0.0 42.00 4.09 F
930 945 1.547472 GGCCCCTCAAATTGCTGCTT 61.547 55.0 0.00 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1302 1340 1.413767 CGATGAACTCCTTGGACGCG 61.414 60.0 3.53 3.53 0.00 6.01 R
1578 1621 1.621672 GGACCTTCCTGAGCCTGAGG 61.622 65.0 0.00 0.00 32.53 3.86 R
2710 7132 1.149148 GGAGAAACAGACCACGAAGC 58.851 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.674611 CGATGTTGTCTGCGACCGTC 61.675 60.000 6.30 0.00 0.00 4.79
57 58 2.804090 GACCGTCGGAGTTGCGAC 60.804 66.667 20.51 14.95 0.00 5.19
128 129 2.342650 GGTGTGTGGCCATTGCGAT 61.343 57.895 9.72 0.00 38.85 4.58
131 132 1.750399 GTGTGGCCATTGCGATCCT 60.750 57.895 9.72 0.00 38.85 3.24
138 139 0.527600 CCATTGCGATCCTCGAACGA 60.528 55.000 0.00 0.00 43.74 3.85
211 212 5.552178 GTCCTTCTCCACAACTACATTCTT 58.448 41.667 0.00 0.00 0.00 2.52
221 222 2.084546 ACTACATTCTTTGCCTTCCGC 58.915 47.619 0.00 0.00 38.31 5.54
249 250 1.331399 TTGTCGGACACACCACTCCA 61.331 55.000 10.97 0.00 38.90 3.86
254 255 2.032528 ACACACCACTCCATGCGG 59.967 61.111 0.00 0.00 0.00 5.69
284 285 1.586028 CGCTTTGTCCCCAATGGTG 59.414 57.895 0.00 0.00 34.77 4.17
362 365 1.148273 TGTCGATGGCTAATGGGGC 59.852 57.895 0.00 0.00 0.00 5.80
372 375 1.002403 TAATGGGGCAGGAGGTCGA 59.998 57.895 0.00 0.00 0.00 4.20
378 381 2.583593 GCAGGAGGTCGATGACGC 60.584 66.667 0.00 0.00 39.58 5.19
441 444 2.100603 CGCGGGAGAGAGAACGAC 59.899 66.667 0.00 0.00 0.00 4.34
461 464 2.496070 ACCGGTCAGATCGATTTGAAGA 59.504 45.455 19.19 1.68 0.00 2.87
463 466 3.429547 CCGGTCAGATCGATTTGAAGAGT 60.430 47.826 19.19 0.00 0.00 3.24
501 504 0.029567 GGTCGGAGATAGCGTGACAG 59.970 60.000 3.44 0.00 40.67 3.51
512 515 6.269315 AGATAGCGTGACAGATAAGTTCAAG 58.731 40.000 0.00 0.00 0.00 3.02
517 520 2.028112 TGACAGATAAGTTCAAGCGGCT 60.028 45.455 0.00 0.00 0.00 5.52
518 521 2.605366 GACAGATAAGTTCAAGCGGCTC 59.395 50.000 1.45 0.00 0.00 4.70
521 524 1.936547 GATAAGTTCAAGCGGCTCCAG 59.063 52.381 1.45 0.00 0.00 3.86
659 673 0.250234 TTATCACTGCCGCTTGCTCT 59.750 50.000 0.00 0.00 42.00 4.09
794 809 3.801307 TGAGAGAGGTGTACTGTACCA 57.199 47.619 14.91 0.95 40.74 3.25
804 819 4.643784 GGTGTACTGTACCAGCACTATACT 59.356 45.833 14.91 0.00 38.12 2.12
805 820 5.824624 GGTGTACTGTACCAGCACTATACTA 59.175 44.000 14.91 0.00 38.12 1.82
806 821 6.238593 GGTGTACTGTACCAGCACTATACTAC 60.239 46.154 14.91 2.28 38.12 2.73
807 822 6.541641 GTGTACTGTACCAGCACTATACTACT 59.458 42.308 14.91 0.00 34.37 2.57
808 823 7.712639 GTGTACTGTACCAGCACTATACTACTA 59.287 40.741 14.91 0.00 34.37 1.82
809 824 7.712639 TGTACTGTACCAGCACTATACTACTAC 59.287 40.741 14.91 0.00 34.37 2.73
810 825 6.060788 ACTGTACCAGCACTATACTACTACC 58.939 44.000 0.00 0.00 34.37 3.18
872 887 3.833645 CGCGGATCAACTCCCCGA 61.834 66.667 0.00 0.00 46.27 5.14
880 895 1.913762 CAACTCCCCGACTCCACCT 60.914 63.158 0.00 0.00 0.00 4.00
923 938 2.750237 GCGTCGGCCCCTCAAATT 60.750 61.111 0.00 0.00 0.00 1.82
929 944 1.986210 GGCCCCTCAAATTGCTGCT 60.986 57.895 0.00 0.00 0.00 4.24
930 945 1.547472 GGCCCCTCAAATTGCTGCTT 61.547 55.000 0.00 0.00 0.00 3.91
1707 1750 1.335132 CGGCCAGGTCCCTTAAGCTA 61.335 60.000 2.24 0.00 0.00 3.32
1710 1753 1.139256 GCCAGGTCCCTTAAGCTACTC 59.861 57.143 0.00 0.00 0.00 2.59
1713 1756 3.108376 CAGGTCCCTTAAGCTACTCCTT 58.892 50.000 0.00 0.00 0.00 3.36
1845 4338 1.134530 GCTTCTCCATGTCGTCGTCG 61.135 60.000 0.00 0.00 38.55 5.12
1920 4413 4.097361 GACCTCACCCCGAAGCCC 62.097 72.222 0.00 0.00 0.00 5.19
1997 4490 4.992740 ACCCCAGCGCAATTGCCA 62.993 61.111 24.24 0.00 37.91 4.92
2136 5517 2.747686 GTGTTCCAGGGGCTCGAA 59.252 61.111 0.00 0.00 0.00 3.71
2577 6993 3.201708 ACAAGAGATCCCAAGATGGAAGG 59.798 47.826 0.00 0.00 40.96 3.46
2710 7132 6.490040 TGTTTCACCATCCTTTTTCCTCTAAG 59.510 38.462 0.00 0.00 0.00 2.18
2781 7204 7.465116 TGAATTCTTCAGGAAGAGGAGAAAAT 58.535 34.615 11.22 0.00 46.80 1.82
2782 7205 7.946776 TGAATTCTTCAGGAAGAGGAGAAAATT 59.053 33.333 11.22 7.08 46.80 1.82
2855 7286 2.733026 GCAGTGCCAAATCAATGTTCAC 59.267 45.455 2.85 0.00 34.83 3.18
2859 7290 3.737266 GTGCCAAATCAATGTTCACTGTG 59.263 43.478 0.17 0.17 0.00 3.66
2864 7295 6.867816 GCCAAATCAATGTTCACTGTGATTAA 59.132 34.615 11.86 0.78 39.25 1.40
2962 7393 1.780309 TGTGGACCTGGTGAAAAGGAT 59.220 47.619 2.82 0.00 38.27 3.24
2976 7407 5.480422 GTGAAAAGGATGGGATAAACAACCT 59.520 40.000 0.00 0.00 42.16 3.50
3002 7433 2.892374 GCACAATGATACCTTTTGGGC 58.108 47.619 0.00 0.00 46.08 5.36
3081 7539 4.486503 GGCAGGCAGGCAGGAGAG 62.487 72.222 0.00 0.00 43.51 3.20
3082 7540 4.486503 GCAGGCAGGCAGGAGAGG 62.487 72.222 0.00 0.00 0.00 3.69
3083 7541 4.486503 CAGGCAGGCAGGAGAGGC 62.487 72.222 0.00 0.00 0.00 4.70
3086 7544 4.527583 GCAGGCAGGAGAGGCGAG 62.528 72.222 0.00 0.00 39.37 5.03
3087 7545 3.847602 CAGGCAGGAGAGGCGAGG 61.848 72.222 0.00 0.00 39.37 4.63
3088 7546 4.390556 AGGCAGGAGAGGCGAGGT 62.391 66.667 0.00 0.00 39.37 3.85
3089 7547 4.154347 GGCAGGAGAGGCGAGGTG 62.154 72.222 0.00 0.00 0.00 4.00
3090 7548 3.071206 GCAGGAGAGGCGAGGTGA 61.071 66.667 0.00 0.00 0.00 4.02
3091 7549 3.074999 GCAGGAGAGGCGAGGTGAG 62.075 68.421 0.00 0.00 0.00 3.51
3092 7550 1.379176 CAGGAGAGGCGAGGTGAGA 60.379 63.158 0.00 0.00 0.00 3.27
3093 7551 0.754957 CAGGAGAGGCGAGGTGAGAT 60.755 60.000 0.00 0.00 0.00 2.75
3094 7552 0.754957 AGGAGAGGCGAGGTGAGATG 60.755 60.000 0.00 0.00 0.00 2.90
3095 7553 1.067250 GAGAGGCGAGGTGAGATGC 59.933 63.158 0.00 0.00 0.00 3.91
3096 7554 1.381056 AGAGGCGAGGTGAGATGCT 60.381 57.895 0.00 0.00 0.00 3.79
3097 7555 1.067250 GAGGCGAGGTGAGATGCTC 59.933 63.158 0.00 0.00 0.00 4.26
3098 7556 1.381056 AGGCGAGGTGAGATGCTCT 60.381 57.895 0.00 0.00 0.00 4.09
3099 7557 0.106469 AGGCGAGGTGAGATGCTCTA 60.106 55.000 0.00 0.00 0.00 2.43
3100 7558 0.031449 GGCGAGGTGAGATGCTCTAC 59.969 60.000 0.00 0.00 0.00 2.59
3101 7559 0.031449 GCGAGGTGAGATGCTCTACC 59.969 60.000 0.00 0.00 34.37 3.18
3102 7560 1.686355 CGAGGTGAGATGCTCTACCT 58.314 55.000 14.25 14.25 41.25 3.08
3103 7561 2.852449 CGAGGTGAGATGCTCTACCTA 58.148 52.381 14.30 0.00 39.88 3.08
3104 7562 2.811431 CGAGGTGAGATGCTCTACCTAG 59.189 54.545 14.30 11.90 39.88 3.02
3105 7563 3.153919 GAGGTGAGATGCTCTACCTAGG 58.846 54.545 7.41 7.41 39.88 3.02
3106 7564 1.616374 GGTGAGATGCTCTACCTAGGC 59.384 57.143 9.30 0.00 32.76 3.93
3149 7612 3.223589 GAGCGGCTCTCCTCCCTC 61.224 72.222 22.32 0.00 35.77 4.30
3150 7613 3.731766 GAGCGGCTCTCCTCCCTCT 62.732 68.421 22.32 0.00 35.77 3.69
3151 7614 3.223589 GCGGCTCTCCTCCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
3164 7627 2.124693 CCTCTCCTCTCCTCCGTGC 61.125 68.421 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.870161 CGAGTCGTCGCAACTCCG 60.870 66.667 3.82 1.70 40.03 4.63
75 76 1.604023 AGGAGCGAACACGTCCTCT 60.604 57.895 0.00 0.00 34.87 3.69
128 129 1.721664 CGCCCTACATCGTTCGAGGA 61.722 60.000 13.45 0.00 0.00 3.71
131 132 2.103538 GCGCCCTACATCGTTCGA 59.896 61.111 0.00 0.00 0.00 3.71
138 139 4.935495 CATGCCCGCGCCCTACAT 62.935 66.667 0.00 0.00 0.00 2.29
161 162 4.084287 ACGACATGGAGTTTGTCTAGGTA 58.916 43.478 0.00 0.00 41.05 3.08
162 163 2.897969 ACGACATGGAGTTTGTCTAGGT 59.102 45.455 0.00 0.00 41.05 3.08
166 167 1.336887 CCGACGACATGGAGTTTGTCT 60.337 52.381 0.00 0.00 41.05 3.41
249 250 2.114670 CGGAGAACATTGGCCGCAT 61.115 57.895 0.00 0.00 37.08 4.73
254 255 0.598065 ACAAAGCGGAGAACATTGGC 59.402 50.000 0.00 0.00 0.00 4.52
296 297 0.897863 AGAGTTGCTCAGCGGAGACT 60.898 55.000 18.66 12.66 44.26 3.24
341 342 0.180171 CCCATTAGCCATCGACACCA 59.820 55.000 0.00 0.00 0.00 4.17
362 365 2.278206 CGCGTCATCGACCTCCTG 60.278 66.667 0.00 0.00 39.71 3.86
378 381 2.742372 CCCTTTGCTCCACGTCCG 60.742 66.667 0.00 0.00 0.00 4.79
441 444 3.119291 CTCTTCAAATCGATCTGACCGG 58.881 50.000 0.00 0.00 0.00 5.28
461 464 3.429547 CCGTCTCGATCCATCTCAAAACT 60.430 47.826 0.00 0.00 0.00 2.66
463 466 2.496070 ACCGTCTCGATCCATCTCAAAA 59.504 45.455 0.00 0.00 0.00 2.44
489 492 5.051374 GCTTGAACTTATCTGTCACGCTATC 60.051 44.000 0.00 0.00 0.00 2.08
493 496 2.222596 CGCTTGAACTTATCTGTCACGC 60.223 50.000 0.00 0.00 0.00 5.34
501 504 1.936547 CTGGAGCCGCTTGAACTTATC 59.063 52.381 0.00 0.00 0.00 1.75
517 520 3.832527 TCATATGTGAGACGGATCTGGA 58.167 45.455 6.47 0.00 34.34 3.86
550 553 1.553706 TCTCTAACAGAACGGACCCC 58.446 55.000 0.00 0.00 0.00 4.95
634 639 3.558505 CAAGCGGCAGTGATAATAATGC 58.441 45.455 1.45 0.00 40.63 3.56
678 692 0.380378 GACAAGCAAACGCCAAGACA 59.620 50.000 0.00 0.00 0.00 3.41
794 809 7.448420 TCGACTAATGGTAGTAGTATAGTGCT 58.552 38.462 3.52 3.52 40.82 4.40
804 819 3.496130 GCGCTACTCGACTAATGGTAGTA 59.504 47.826 0.00 0.00 40.82 1.82
805 820 2.290093 GCGCTACTCGACTAATGGTAGT 59.710 50.000 0.00 0.00 43.56 2.73
806 821 2.350580 GGCGCTACTCGACTAATGGTAG 60.351 54.545 7.64 3.56 44.55 3.18
807 822 1.605710 GGCGCTACTCGACTAATGGTA 59.394 52.381 7.64 0.00 44.55 3.25
808 823 0.384669 GGCGCTACTCGACTAATGGT 59.615 55.000 7.64 0.00 44.55 3.55
809 824 3.180984 GGCGCTACTCGACTAATGG 57.819 57.895 7.64 0.00 44.55 3.16
847 862 3.660865 GGAGTTGATCCGCGGTTAATAT 58.339 45.455 27.15 11.04 38.67 1.28
872 887 3.958860 GTGCCCTGCAGGTGGAGT 61.959 66.667 30.63 0.00 40.08 3.85
922 937 4.687215 AGCTCGCCGAAGCAGCAA 62.687 61.111 10.33 0.00 45.00 3.91
1054 1076 1.965930 TACTTGGCTGTTGCGGCTG 60.966 57.895 0.00 0.00 40.82 4.85
1055 1077 1.966451 GTACTTGGCTGTTGCGGCT 60.966 57.895 0.00 0.00 40.82 5.52
1056 1078 2.187599 CTGTACTTGGCTGTTGCGGC 62.188 60.000 0.00 0.00 40.82 6.53
1057 1079 0.884704 ACTGTACTTGGCTGTTGCGG 60.885 55.000 0.00 0.00 40.82 5.69
1058 1080 0.235665 CACTGTACTTGGCTGTTGCG 59.764 55.000 0.00 0.00 40.82 4.85
1059 1081 1.264288 GTCACTGTACTTGGCTGTTGC 59.736 52.381 0.00 0.00 38.76 4.17
1302 1340 1.413767 CGATGAACTCCTTGGACGCG 61.414 60.000 3.53 3.53 0.00 6.01
1344 1382 4.899239 GGGAGCATGGTCGCCGAG 62.899 72.222 26.51 0.00 0.00 4.63
1483 1526 2.188161 GCCGGTGGGTTTTCACGAA 61.188 57.895 1.90 0.00 38.46 3.85
1485 1528 3.666253 GGCCGGTGGGTTTTCACG 61.666 66.667 1.90 0.00 38.46 4.35
1578 1621 1.621672 GGACCTTCCTGAGCCTGAGG 61.622 65.000 0.00 0.00 32.53 3.86
1626 1669 2.279784 GGAGATTGCGGAGGCGAG 60.280 66.667 0.00 0.00 44.10 5.03
1686 1729 4.090588 TTAAGGGACCTGGCCGCG 62.091 66.667 0.00 0.00 0.00 6.46
1707 1750 1.878656 CGTTCCGCTGGAGAAGGAGT 61.879 60.000 0.00 0.00 35.23 3.85
1710 1753 2.125512 CCGTTCCGCTGGAGAAGG 60.126 66.667 0.00 0.67 31.21 3.46
1845 4338 4.779733 TGGGCGGAGGAGGAGGAC 62.780 72.222 0.00 0.00 0.00 3.85
1872 4365 4.097361 GAGTGGCGGGGGAAGTCC 62.097 72.222 0.00 0.00 0.00 3.85
1920 4413 4.925576 CGGACGAGGCGGATTCGG 62.926 72.222 0.00 0.00 42.12 4.30
1979 4472 3.694538 GGCAATTGCGCTGGGGTT 61.695 61.111 23.48 0.00 43.26 4.11
2472 6879 4.030913 AGGAAATGCTGCCTAGTAGTACA 58.969 43.478 2.52 0.00 31.31 2.90
2577 6993 1.731720 ATCAGAGCTCGCAGTTTTCC 58.268 50.000 8.37 0.00 0.00 3.13
2710 7132 1.149148 GGAGAAACAGACCACGAAGC 58.851 55.000 0.00 0.00 0.00 3.86
2782 7205 9.342308 ACAACAGTTGAGAAATCTCTTTCATAA 57.658 29.630 20.56 0.00 42.71 1.90
2892 7323 7.615757 CCTTCTCCTCCCAACTTTTTACAATAT 59.384 37.037 0.00 0.00 0.00 1.28
2962 7393 3.287222 GCATGCTAGGTTGTTTATCCCA 58.713 45.455 11.37 0.00 0.00 4.37
2976 7407 5.163530 CCAAAAGGTATCATTGTGCATGCTA 60.164 40.000 20.33 5.09 32.13 3.49
3002 7433 3.052036 CACCAGCCATGAAAAGTTTTCG 58.948 45.455 20.51 9.83 0.00 3.46
3069 7527 4.527583 CTCGCCTCTCCTGCCTGC 62.528 72.222 0.00 0.00 0.00 4.85
3070 7528 3.847602 CCTCGCCTCTCCTGCCTG 61.848 72.222 0.00 0.00 0.00 4.85
3071 7529 4.390556 ACCTCGCCTCTCCTGCCT 62.391 66.667 0.00 0.00 0.00 4.75
3072 7530 4.154347 CACCTCGCCTCTCCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
3073 7531 3.071206 TCACCTCGCCTCTCCTGC 61.071 66.667 0.00 0.00 0.00 4.85
3074 7532 0.754957 ATCTCACCTCGCCTCTCCTG 60.755 60.000 0.00 0.00 0.00 3.86
3075 7533 0.754957 CATCTCACCTCGCCTCTCCT 60.755 60.000 0.00 0.00 0.00 3.69
3076 7534 1.739049 CATCTCACCTCGCCTCTCC 59.261 63.158 0.00 0.00 0.00 3.71
3077 7535 1.067250 GCATCTCACCTCGCCTCTC 59.933 63.158 0.00 0.00 0.00 3.20
3078 7536 1.381056 AGCATCTCACCTCGCCTCT 60.381 57.895 0.00 0.00 0.00 3.69
3079 7537 1.067250 GAGCATCTCACCTCGCCTC 59.933 63.158 0.00 0.00 0.00 4.70
3080 7538 3.215245 GAGCATCTCACCTCGCCT 58.785 61.111 0.00 0.00 0.00 5.52
3087 7545 5.346101 CCTAGCCTAGGTAGAGCATCTCAC 61.346 54.167 11.31 0.00 40.89 3.51
3088 7546 3.245087 CCTAGCCTAGGTAGAGCATCTCA 60.245 52.174 11.31 0.00 40.89 3.27
3089 7547 3.352648 CCTAGCCTAGGTAGAGCATCTC 58.647 54.545 11.31 0.00 40.89 2.75
3090 7548 3.449746 CCTAGCCTAGGTAGAGCATCT 57.550 52.381 11.31 0.00 42.93 2.90
3101 7559 1.254284 CCCATCCTCGCCTAGCCTAG 61.254 65.000 0.00 0.00 0.00 3.02
3102 7560 1.228894 CCCATCCTCGCCTAGCCTA 60.229 63.158 0.00 0.00 0.00 3.93
3103 7561 2.525381 CCCATCCTCGCCTAGCCT 60.525 66.667 0.00 0.00 0.00 4.58
3104 7562 2.524394 TCCCATCCTCGCCTAGCC 60.524 66.667 0.00 0.00 0.00 3.93
3105 7563 1.531840 TCTCCCATCCTCGCCTAGC 60.532 63.158 0.00 0.00 0.00 3.42
3106 7564 1.182385 GGTCTCCCATCCTCGCCTAG 61.182 65.000 0.00 0.00 0.00 3.02
3147 7610 2.477176 CGCACGGAGGAGAGGAGAG 61.477 68.421 0.00 0.00 0.00 3.20
3148 7611 2.438614 CGCACGGAGGAGAGGAGA 60.439 66.667 0.00 0.00 0.00 3.71
3149 7612 2.438614 TCGCACGGAGGAGAGGAG 60.439 66.667 0.00 0.00 0.00 3.69
3150 7613 2.438614 CTCGCACGGAGGAGAGGA 60.439 66.667 0.00 0.00 39.22 3.71
3151 7614 4.200283 GCTCGCACGGAGGAGAGG 62.200 72.222 6.82 0.00 43.36 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.