AutoCloner

Multiple sequence alignment - TraesCS6D01G128500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G128500	chr6D	100.000	3248	0	0	1	3248	93523742	93526989	0.000000e+00	5999.0
1	TraesCS6D01G128500	chr6D	85.010	1461	194	12	965	2421	88892092	88890653	0.000000e+00	1461.0
2	TraesCS6D01G128500	chr6D	78.251	1292	236	28	1052	2318	88837036	88835765	0.000000e+00	787.0
3	TraesCS6D01G128500	chr6D	80.214	561	79	22	2568	3108	88890651	88890103	3.040000e-105	392.0
4	TraesCS6D01G128500	chr6B	91.451	2316	155	27	957	3248	179470039	179467743	0.000000e+00	3140.0
5	TraesCS6D01G128500	chr6B	83.778	1461	216	14	965	2421	169236585	169235142	0.000000e+00	1365.0
6	TraesCS6D01G128500	chr6B	78.619	1202	215	30	1058	2241	169176987	169175810	0.000000e+00	758.0
7	TraesCS6D01G128500	chr6B	90.909	143	11	2	724	864	179470578	179470436	1.190000e-44	191.0
8	TraesCS6D01G128500	chr6B	75.873	315	45	17	2605	2910	169235124	169234832	7.310000e-27	132.0
9	TraesCS6D01G128500	chr6B	87.671	73	7	2	864	934	179470161	179470089	2.080000e-12	84.2
10	TraesCS6D01G128500	chr6A	95.994	1373	48	4	961	2329	115281351	115279982	0.000000e+00	2224.0
11	TraesCS6D01G128500	chr6A	85.991	1342	179	3	995	2336	106986262	106984930	0.000000e+00	1428.0
12	TraesCS6D01G128500	chr6A	94.059	606	32	2	2517	3118	115279965	115279360	0.000000e+00	917.0
13	TraesCS6D01G128500	chr6A	78.930	1196	222	22	1058	2241	106895373	106894196	0.000000e+00	785.0
14	TraesCS6D01G128500	chr6A	76.360	478	90	18	1033	1503	31745474	31745013	5.420000e-58	235.0
15	TraesCS6D01G128500	chr3A	93.844	731	27	10	1	724	594039103	594038384	0.000000e+00	1085.0
16	TraesCS6D01G128500	chr1B	88.643	678	49	20	1	657	452726370	452727040	0.000000e+00	800.0
17	TraesCS6D01G128500	chr1A	91.587	416	22	9	248	655	561648346	561648756	2.190000e-156	562.0
18	TraesCS6D01G128500	chr1A	92.593	162	6	5	22	177	561648168	561648329	9.070000e-56	228.0
19	TraesCS6D01G128500	chr3D	87.500	96	12	0	3107	3202	473457477	473457382	9.530000e-21	111.0
20	TraesCS6D01G128500	chr5D	95.833	48	2	0	2178	2225	432805601	432805554	9.660000e-11	78.7
21	TraesCS6D01G128500	chr5D	84.722	72	11	0	2159	2230	432984363	432984434	4.500000e-09	73.1
22	TraesCS6D01G128500	chr5B	84.722	72	11	0	2159	2230	526270753	526270824	4.500000e-09	73.1
23	TraesCS6D01G128500	chr5A	90.741	54	5	0	2178	2231	547404636	547404583	4.500000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G128500	chr6D	93523742	93526989	3247	False	5999.0	5999	100.000000	1	3248	1	chr6D.!!$F1	3247
1	TraesCS6D01G128500	chr6D	88890103	88892092	1989	True	926.5	1461	82.612000	965	3108	2	chr6D.!!$R2	2143
2	TraesCS6D01G128500	chr6D	88835765	88837036	1271	True	787.0	787	78.251000	1052	2318	1	chr6D.!!$R1	1266
3	TraesCS6D01G128500	chr6B	179467743	179470578	2835	True	1138.4	3140	90.010333	724	3248	3	chr6B.!!$R3	2524
4	TraesCS6D01G128500	chr6B	169175810	169176987	1177	True	758.0	758	78.619000	1058	2241	1	chr6B.!!$R1	1183
5	TraesCS6D01G128500	chr6B	169234832	169236585	1753	True	748.5	1365	79.825500	965	2910	2	chr6B.!!$R2	1945
6	TraesCS6D01G128500	chr6A	115279360	115281351	1991	True	1570.5	2224	95.026500	961	3118	2	chr6A.!!$R4	2157
7	TraesCS6D01G128500	chr6A	106984930	106986262	1332	True	1428.0	1428	85.991000	995	2336	1	chr6A.!!$R3	1341
8	TraesCS6D01G128500	chr6A	106894196	106895373	1177	True	785.0	785	78.930000	1058	2241	1	chr6A.!!$R2	1183
9	TraesCS6D01G128500	chr3A	594038384	594039103	719	True	1085.0	1085	93.844000	1	724	1	chr3A.!!$R1	723
10	TraesCS6D01G128500	chr1B	452726370	452727040	670	False	800.0	800	88.643000	1	657	1	chr1B.!!$F1	656
11	TraesCS6D01G128500	chr1A	561648168	561648756	588	False	395.0	562	92.090000	22	655	2	chr1A.!!$F1	633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
114	120	0.178947	ATGAGATCCTCCGGGTCTCC	60.179	60.0	17.96	3.91	38.16	3.71	F
1343	1683	0.035439	GCCGATTTCTTCCTCACCCA	60.035	55.0	0.00	0.00	0.00	4.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1905	2253	0.610232	GCCAGACCCAAGCATGAAGT	60.610	55.0	0.00	0.00	0.00	3.01	R
2450	2812	0.035056	GTACTGCTGGACCTTGGCAT	60.035	55.0	7.57	3.01	35.37	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	120	0.178947	ATGAGATCCTCCGGGTCTCC	60.179	60.000	17.96	3.91	38.16	3.71
150	156	6.176183	ACATCTACCTGTTCAGGATCTTTTG	58.824	40.000	23.45	14.45	0.00	2.44
154	160	7.060421	TCTACCTGTTCAGGATCTTTTGTTTT	58.940	34.615	23.45	1.39	0.00	2.43
185	197	3.509442	TCAGGCATGTGGAGGAAATTTT	58.491	40.909	0.00	0.00	0.00	1.82
187	199	3.998341	CAGGCATGTGGAGGAAATTTTTG	59.002	43.478	0.00	0.00	0.00	2.44
232	245	3.995199	TCTAGAGTTTTGAGGTGTGCTG	58.005	45.455	0.00	0.00	0.00	4.41
326	342	9.527157	TCCAAGTAATTGTGATGAATTCCTAAA	57.473	29.630	2.27	0.00	0.00	1.85
407	428	2.996621	GTTCTCAGAGTAATGCAGCGTT	59.003	45.455	4.94	4.94	0.00	4.84
578	605	8.846943	ATGATTGTATCGCTCCAATAATGTTA	57.153	30.769	0.00	0.00	31.67	2.41
582	609	8.902540	TTGTATCGCTCCAATAATGTTAATCT	57.097	30.769	0.00	0.00	0.00	2.40
681	710	8.587952	ACAAAATGACTAAAAAGTTACATGCC	57.412	30.769	0.00	0.00	0.00	4.40
809	839	8.410912	TGTCATTGATCATCAAAATCTGATTCC	58.589	33.333	3.63	0.00	42.46	3.01
810	840	8.410912	GTCATTGATCATCAAAATCTGATTCCA	58.589	33.333	3.63	0.00	42.46	3.53
812	842	9.594478	CATTGATCATCAAAATCTGATTCCAAA	57.406	29.630	3.63	0.00	42.46	3.28
855	886	2.713770	GAGCACGGCTCGATCGTA	59.286	61.111	15.94	0.90	45.85	3.43
856	887	1.063649	GAGCACGGCTCGATCGTAA	59.936	57.895	15.94	0.00	45.85	3.18
897	1203	3.568538	CTCTCAATTTCCCACGCAAAAG	58.431	45.455	0.00	0.00	0.00	2.27
898	1204	3.218453	TCTCAATTTCCCACGCAAAAGA	58.782	40.909	0.00	0.00	0.00	2.52
900	1206	4.098654	TCTCAATTTCCCACGCAAAAGAAA	59.901	37.500	0.00	0.00	33.13	2.52
901	1207	4.759782	TCAATTTCCCACGCAAAAGAAAA	58.240	34.783	0.00	0.00	32.41	2.29
902	1208	5.363939	TCAATTTCCCACGCAAAAGAAAAT	58.636	33.333	0.00	0.00	32.41	1.82
905	1211	6.691754	ATTTCCCACGCAAAAGAAAATTTT	57.308	29.167	2.28	2.28	32.41	1.82
906	1212	7.793927	ATTTCCCACGCAAAAGAAAATTTTA	57.206	28.000	2.75	0.00	32.41	1.52
907	1213	7.611213	TTTCCCACGCAAAAGAAAATTTTAA	57.389	28.000	2.75	0.00	0.00	1.52
910	1218	7.689299	TCCCACGCAAAAGAAAATTTTAAAAG	58.311	30.769	2.75	0.00	0.00	2.27
934	1242	8.706322	AGTAAAGCTCCCAATTTCTAGAAAAA	57.294	30.769	21.26	0.23	33.56	1.94
956	1292	8.753497	AAAAATTACTACTCCATTCTCCATCC	57.247	34.615	0.00	0.00	0.00	3.51
957	1293	7.698163	AAATTACTACTCCATTCTCCATCCT	57.302	36.000	0.00	0.00	0.00	3.24
959	1295	3.582164	ACTACTCCATTCTCCATCCTCC	58.418	50.000	0.00	0.00	0.00	4.30
985	1322	2.361104	GCGCCATTCCAACCTCCA	60.361	61.111	0.00	0.00	0.00	3.86
992	1329	3.814316	GCCATTCCAACCTCCAGTTTAGT	60.814	47.826	0.00	0.00	36.18	2.24
993	1330	4.010349	CCATTCCAACCTCCAGTTTAGTC	58.990	47.826	0.00	0.00	36.18	2.59
1074	1414	2.512974	CCCACCACCGTAATCGCC	60.513	66.667	0.00	0.00	35.54	5.54
1343	1683	0.035439	GCCGATTTCTTCCTCACCCA	60.035	55.000	0.00	0.00	0.00	4.51
1521	1864	3.701532	GAGATCTTCGACGACCAGAAT	57.298	47.619	0.00	0.00	0.00	2.40
1551	1897	2.766263	CTCCTGTCTTGGGTGCTACATA	59.234	50.000	0.00	0.00	0.00	2.29
1604	1950	0.959553	CTGGTCTACACCTGTCACGT	59.040	55.000	0.00	0.00	44.17	4.49
1720	2068	0.478507	ACACTGGCTTAAGGTTGGCT	59.521	50.000	4.29	0.00	0.00	4.75
1733	2081	2.170166	GGTTGGCTCAATGGTGAATGA	58.830	47.619	0.00	0.00	31.88	2.57
1905	2253	3.153130	TGTCTGCCCGATTGATTTTGAA	58.847	40.909	0.00	0.00	0.00	2.69
2084	2438	3.727726	TCTGTACCATGGATATGTTGCG	58.272	45.455	21.47	0.00	32.21	4.85
2266	2626	5.508200	TTGACAAAATGTGGACAAGGTAC	57.492	39.130	0.00	0.00	0.00	3.34
2292	2652	0.966179	ATTTCCTTCGTTTGGCCACC	59.034	50.000	3.88	0.00	0.00	4.61
2374	2736	3.773418	TGAGACACGGGTAAATTGGAA	57.227	42.857	0.00	0.00	0.00	3.53
2378	2740	7.127012	TGAGACACGGGTAAATTGGAATATA	57.873	36.000	0.00	0.00	0.00	0.86
2477	2839	4.273148	AGGTCCAGCAGTACTAAGTTTG	57.727	45.455	0.00	0.00	0.00	2.93
2491	2853	4.836736	ACTAAGTTTGGTAGTACTGCTGGA	59.163	41.667	10.95	0.00	29.89	3.86
2494	2856	4.097418	AGTTTGGTAGTACTGCTGGATCT	58.903	43.478	10.95	1.61	0.00	2.75
2495	2857	4.160626	AGTTTGGTAGTACTGCTGGATCTC	59.839	45.833	10.95	0.00	0.00	2.75
2496	2858	3.382083	TGGTAGTACTGCTGGATCTCA	57.618	47.619	10.95	0.00	0.00	3.27
2497	2859	3.916035	TGGTAGTACTGCTGGATCTCAT	58.084	45.455	10.95	0.00	0.00	2.90
2498	2860	3.891977	TGGTAGTACTGCTGGATCTCATC	59.108	47.826	10.95	0.00	0.00	2.92
2501	2863	5.414454	GGTAGTACTGCTGGATCTCATCTAG	59.586	48.000	10.95	0.00	40.46	2.43
2502	2864	5.060427	AGTACTGCTGGATCTCATCTAGT	57.940	43.478	0.00	0.00	39.75	2.57
2503	2865	6.194285	AGTACTGCTGGATCTCATCTAGTA	57.806	41.667	0.00	0.00	39.75	1.82
2504	2866	6.789268	AGTACTGCTGGATCTCATCTAGTAT	58.211	40.000	0.00	0.00	39.75	2.12
2505	2867	7.923461	AGTACTGCTGGATCTCATCTAGTATA	58.077	38.462	0.00	0.00	39.75	1.47
2507	2869	9.015367	GTACTGCTGGATCTCATCTAGTATAAA	57.985	37.037	0.00	0.00	39.75	1.40
2509	2871	8.530311	ACTGCTGGATCTCATCTAGTATAAATG	58.470	37.037	0.00	0.00	39.75	2.32
2510	2872	8.427902	TGCTGGATCTCATCTAGTATAAATGT	57.572	34.615	0.00	0.00	39.75	2.71
2544	2923	0.673333	TACCACTGTGCCATTCAGCG	60.673	55.000	1.29	0.00	36.50	5.18
2555	2934	2.554142	CCATTCAGCGCAAGTCTATGA	58.446	47.619	11.47	0.00	41.68	2.15
2616	2995	1.373570	GCATTCCGTCTCCTTTGAGG	58.626	55.000	0.00	0.00	39.23	3.86
2664	3051	9.436957	GGTATCGTTGTCATTTTGATCCTATAT	57.563	33.333	0.00	0.00	0.00	0.86
2770	3164	6.174720	TCTCCTAATCACTCTGTTGTTGTT	57.825	37.500	0.00	0.00	0.00	2.83
2789	3185	5.275067	TGTTTTCCCTTTCATTCACCTTG	57.725	39.130	0.00	0.00	0.00	3.61
2790	3186	4.100808	TGTTTTCCCTTTCATTCACCTTGG	59.899	41.667	0.00	0.00	0.00	3.61
3150	3552	4.406648	TGATGCTCAAACGGATGTATCT	57.593	40.909	0.00	0.00	0.00	1.98
3152	3554	5.289595	TGATGCTCAAACGGATGTATCTAC	58.710	41.667	0.00	0.00	0.00	2.59
3153	3555	3.702330	TGCTCAAACGGATGTATCTACG	58.298	45.455	0.00	0.00	0.00	3.51
3166	3568	9.917129	CGGATGTATCTACGTCTAGATATATCT	57.083	37.037	27.02	18.99	46.99	1.98
3183	3585	8.079203	AGATATATCTGTTTGAGCGTCAAGTAG	58.921	37.037	14.60	4.69	35.18	2.57
3237	3639	5.690865	CTGGCCTATATTTGTAGACCCAAA	58.309	41.667	3.32	0.00	38.58	3.28
3245	3647	7.703058	ATATTTGTAGACCCAAAGAACAAGG	57.297	36.000	0.00	0.00	37.71	3.61

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	120	7.552687	TGAACAGGTAGATGTTTTAAGCATAGG	59.447	37.037	0.00	0.00	43.32	2.57
161	167	0.321564	TTCCTCCACATGCCTGAACG	60.322	55.000	0.00	0.00	0.00	3.95
162	168	1.909700	TTTCCTCCACATGCCTGAAC	58.090	50.000	0.00	0.00	0.00	3.18
168	180	3.667360	AGCAAAAATTTCCTCCACATGC	58.333	40.909	0.00	0.00	0.00	4.06
232	245	5.814705	TCCCAATTGTCATGTGAACAAAAAC	59.185	36.000	4.43	0.00	0.00	2.43
407	428	5.373222	ACTGCAACCACATAACTTCTTGTA	58.627	37.500	0.00	0.00	0.00	2.41
505	529	9.965902	AAGGAATTCTTTCTGTTACATCACTAT	57.034	29.630	5.23	0.00	29.99	2.12
553	580	7.750229	AACATTATTGGAGCGATACAATCAT	57.250	32.000	15.70	6.96	38.24	2.45
678	707	2.398554	GCCGATTTTCGCTGAGGCA	61.399	57.895	0.00	0.00	43.65	4.75
681	710	2.021931	GCGCCGATTTTCGCTGAG	59.978	61.111	0.00	0.00	46.92	3.35
706	735	1.912110	GTGACTAGAAGCTAACGCGTG	59.088	52.381	14.98	1.19	42.32	5.34
707	736	1.135460	GGTGACTAGAAGCTAACGCGT	60.135	52.381	5.58	5.58	42.32	6.01
710	739	4.744570	TCATTGGTGACTAGAAGCTAACG	58.255	43.478	0.00	0.00	0.00	3.18
761	790	9.906660	TGACAAGACAATACAATTAAAATGACC	57.093	29.630	0.00	0.00	0.00	4.02
855	886	7.990886	TGAGAGCTTTATAACGTAAATGGGATT	59.009	33.333	0.00	0.00	0.00	3.01
856	887	7.506114	TGAGAGCTTTATAACGTAAATGGGAT	58.494	34.615	0.00	0.00	0.00	3.85
905	1211	9.802039	TTCTAGAAATTGGGAGCTTTACTTTTA	57.198	29.630	1.68	0.00	0.00	1.52
906	1212	8.706322	TTCTAGAAATTGGGAGCTTTACTTTT	57.294	30.769	1.68	0.00	0.00	2.27
907	1213	8.706322	TTTCTAGAAATTGGGAGCTTTACTTT	57.294	30.769	13.99	0.00	0.00	2.66
934	1242	6.271159	GGAGGATGGAGAATGGAGTAGTAATT	59.729	42.308	0.00	0.00	0.00	1.40
935	1243	5.782845	GGAGGATGGAGAATGGAGTAGTAAT	59.217	44.000	0.00	0.00	0.00	1.89
937	1245	4.170053	TGGAGGATGGAGAATGGAGTAGTA	59.830	45.833	0.00	0.00	0.00	1.82
939	1247	3.581101	TGGAGGATGGAGAATGGAGTAG	58.419	50.000	0.00	0.00	0.00	2.57
940	1248	3.706389	TGGAGGATGGAGAATGGAGTA	57.294	47.619	0.00	0.00	0.00	2.59
952	1268	0.449388	GCGCTCTTGTTTGGAGGATG	59.551	55.000	0.00	0.00	0.00	3.51
956	1292	0.883833	AATGGCGCTCTTGTTTGGAG	59.116	50.000	7.64	0.00	0.00	3.86
957	1293	0.881118	GAATGGCGCTCTTGTTTGGA	59.119	50.000	7.64	0.00	0.00	3.53
959	1295	0.597568	TGGAATGGCGCTCTTGTTTG	59.402	50.000	7.64	0.00	0.00	2.93
985	1322	4.142138	CGAGGTCATGGCTTAGACTAAACT	60.142	45.833	0.00	0.00	35.18	2.66
992	1329	0.461548	CTGCGAGGTCATGGCTTAGA	59.538	55.000	0.00	0.00	33.04	2.10
993	1330	1.156645	GCTGCGAGGTCATGGCTTAG	61.157	60.000	0.00	0.00	33.04	2.18
1056	1393	2.266689	GCGATTACGGTGGTGGGT	59.733	61.111	0.00	0.00	40.15	4.51
1074	1414	0.878416	GGAGGAGATCATCGTCGAGG	59.122	60.000	0.00	0.00	42.57	4.63
1626	1972	3.269178	CCTGCTTTCTGATGAGAAGACC	58.731	50.000	0.00	0.00	39.44	3.85
1720	2068	2.234661	AGACGAGCTCATTCACCATTGA	59.765	45.455	15.40	0.00	0.00	2.57
1733	2081	3.000684	TGTGTATCCAGTAGACGAGCT	57.999	47.619	0.00	0.00	29.44	4.09
1735	2083	6.811665	TGATTTTTGTGTATCCAGTAGACGAG	59.188	38.462	0.00	0.00	29.44	4.18
1857	2205	0.620556	GCCTTCCATCCTTGGTCTCA	59.379	55.000	0.00	0.00	44.06	3.27
1905	2253	0.610232	GCCAGACCCAAGCATGAAGT	60.610	55.000	0.00	0.00	0.00	3.01
2084	2438	6.699575	ACCAACAAGGATAAATAGCATCAC	57.300	37.500	0.00	0.00	41.22	3.06
2266	2626	2.228822	CCAAACGAAGGAAATGTCAGGG	59.771	50.000	0.00	0.00	0.00	4.45
2303	2663	7.617723	GTCACCCTGGAGATATCATTACTAGAT	59.382	40.741	5.32	0.00	0.00	1.98
2304	2664	6.948886	GTCACCCTGGAGATATCATTACTAGA	59.051	42.308	5.32	0.00	0.00	2.43
2305	2665	6.721668	TGTCACCCTGGAGATATCATTACTAG	59.278	42.308	5.32	0.00	0.00	2.57
2340	2702	4.321601	CCGTGTCTCAAATAAAAATGCCCA	60.322	41.667	0.00	0.00	0.00	5.36
2343	2705	4.805219	ACCCGTGTCTCAAATAAAAATGC	58.195	39.130	0.00	0.00	0.00	3.56
2344	2706	8.980143	ATTTACCCGTGTCTCAAATAAAAATG	57.020	30.769	0.00	0.00	0.00	2.32
2345	2707	9.418045	CAATTTACCCGTGTCTCAAATAAAAAT	57.582	29.630	0.00	0.00	0.00	1.82
2378	2740	8.746922	CATTTGGCGAATGCTACAAAATATAT	57.253	30.769	14.26	0.00	38.79	0.86
2441	2803	4.067896	CTGGACCTTGGCATGATACATAC	58.932	47.826	0.00	0.00	0.00	2.39
2442	2804	3.496692	GCTGGACCTTGGCATGATACATA	60.497	47.826	0.00	0.00	0.00	2.29
2443	2805	2.750807	GCTGGACCTTGGCATGATACAT	60.751	50.000	0.00	0.00	0.00	2.29
2445	2807	1.312815	GCTGGACCTTGGCATGATAC	58.687	55.000	0.00	0.00	0.00	2.24
2446	2808	0.918258	TGCTGGACCTTGGCATGATA	59.082	50.000	0.00	0.00	0.00	2.15
2447	2809	0.395311	CTGCTGGACCTTGGCATGAT	60.395	55.000	0.00	0.00	35.37	2.45
2448	2810	1.001764	CTGCTGGACCTTGGCATGA	60.002	57.895	0.00	0.00	35.37	3.07
2449	2811	0.035152	TACTGCTGGACCTTGGCATG	60.035	55.000	7.57	0.00	35.37	4.06
2450	2812	0.035056	GTACTGCTGGACCTTGGCAT	60.035	55.000	7.57	3.01	35.37	4.40
2451	2813	1.127567	AGTACTGCTGGACCTTGGCA	61.128	55.000	1.71	0.13	34.66	4.92
2452	2814	0.902531	TAGTACTGCTGGACCTTGGC	59.097	55.000	5.39	0.00	0.00	4.52
2477	2839	4.148838	AGATGAGATCCAGCAGTACTACC	58.851	47.826	0.00	0.00	32.59	3.18
2484	2846	8.530311	ACATTTATACTAGATGAGATCCAGCAG	58.470	37.037	0.00	1.75	32.59	4.24
2485	2847	8.427902	ACATTTATACTAGATGAGATCCAGCA	57.572	34.615	0.00	0.00	32.59	4.41
2555	2934	6.039047	CAGAAATGCAGCCAGTCATATAAAGT	59.961	38.462	0.00	0.00	0.00	2.66
2616	2995	3.002348	CGATTAAAAGGTGGAATCTCCGC	59.998	47.826	0.00	0.00	46.03	5.54
2664	3051	3.945921	TCCAACGGACAACACAACATAAA	59.054	39.130	0.00	0.00	0.00	1.40
2770	3164	3.922375	ACCAAGGTGAATGAAAGGGAAA	58.078	40.909	0.00	0.00	0.00	3.13
2789	3185	9.793259	TGGATAGGTATCTCATTTCAAATAACC	57.207	33.333	0.00	0.00	33.28	2.85
2864	3261	8.617809	TCAACAGGATTTCAAAGTGTAAACTAC	58.382	33.333	0.00	0.00	0.00	2.73
3150	3552	7.387122	ACGCTCAAACAGATATATCTAGACGTA	59.613	37.037	14.92	0.00	34.85	3.57
3152	3554	6.604012	ACGCTCAAACAGATATATCTAGACG	58.396	40.000	14.92	15.81	34.85	4.18
3153	3555	7.585867	TGACGCTCAAACAGATATATCTAGAC	58.414	38.462	14.92	4.88	34.85	2.59
3166	3568	4.304110	CCTTACTACTTGACGCTCAAACA	58.696	43.478	2.82	0.00	35.73	2.83
3183	3585	3.294214	TGATACTTCCTCCGTCCCTTAC	58.706	50.000	0.00	0.00	0.00	2.34
3192	3594	6.459923	CAGCCTACTAAATGATACTTCCTCC	58.540	44.000	0.00	0.00	0.00	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.