Multiple sequence alignment - TraesCS6D01G128300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G128300 chr6D 100.000 4024 0 0 1 4024 93433115 93437138 0.000000e+00 7432.0
1 TraesCS6D01G128300 chr6D 83.255 1917 228 51 970 2852 96650529 96648672 0.000000e+00 1676.0
2 TraesCS6D01G128300 chr6D 82.469 1620 205 34 735 2320 96644037 96642463 0.000000e+00 1345.0
3 TraesCS6D01G128300 chr6D 80.435 460 56 21 2399 2846 96642461 96642024 1.800000e-83 320.0
4 TraesCS6D01G128300 chr6D 91.160 181 16 0 545 725 96644258 96644078 3.110000e-61 246.0
5 TraesCS6D01G128300 chr6D 86.286 175 20 4 559 731 96650921 96650749 1.910000e-43 187.0
6 TraesCS6D01G128300 chr6D 96.809 94 3 0 514 607 93433577 93433670 1.500000e-34 158.0
7 TraesCS6D01G128300 chr6D 96.809 94 3 0 463 556 93433628 93433721 1.500000e-34 158.0
8 TraesCS6D01G128300 chr6D 97.674 43 1 0 565 607 93433577 93433619 1.550000e-09 75.0
9 TraesCS6D01G128300 chr6D 97.674 43 1 0 463 505 93433679 93433721 1.550000e-09 75.0
10 TraesCS6D01G128300 chr6B 91.399 1965 128 16 545 2502 179659959 179658029 0.000000e+00 2654.0
11 TraesCS6D01G128300 chr6B 93.768 690 27 5 2890 3572 179656922 179656242 0.000000e+00 1022.0
12 TraesCS6D01G128300 chr6B 91.842 380 15 8 2491 2868 179657986 179657621 2.140000e-142 516.0
13 TraesCS6D01G128300 chr6B 96.154 286 7 4 1 286 644128796 644129077 7.880000e-127 464.0
14 TraesCS6D01G128300 chr6B 81.034 174 13 9 383 556 179660050 179659897 1.960000e-23 121.0
15 TraesCS6D01G128300 chr6B 73.968 315 48 22 3556 3854 72380349 72380645 3.310000e-16 97.1
16 TraesCS6D01G128300 chr6B 97.674 43 1 0 463 505 179659939 179659897 1.550000e-09 75.0
17 TraesCS6D01G128300 chr6A 82.859 1826 213 43 550 2328 115348148 115346376 0.000000e+00 1546.0
18 TraesCS6D01G128300 chr6A 90.449 1068 83 10 1444 2502 115341638 115340581 0.000000e+00 1389.0
19 TraesCS6D01G128300 chr6A 87.600 1129 55 31 2891 3973 115339463 115338374 0.000000e+00 1230.0
20 TraesCS6D01G128300 chr6A 91.781 365 14 6 2505 2868 115340511 115340162 1.000000e-135 494.0
21 TraesCS6D01G128300 chr6A 83.908 174 10 11 383 556 115348247 115348092 2.510000e-32 150.0
22 TraesCS6D01G128300 chr3B 82.975 1674 222 35 739 2387 169429478 169431113 0.000000e+00 1454.0
23 TraesCS6D01G128300 chr3B 79.501 361 54 15 2891 3235 169431758 169432114 5.200000e-59 239.0
24 TraesCS6D01G128300 chr3B 77.632 304 47 15 3564 3857 101672040 101672332 8.950000e-37 165.0
25 TraesCS6D01G128300 chr3B 84.553 123 16 3 602 722 169429305 169429426 7.060000e-23 119.0
26 TraesCS6D01G128300 chr3B 89.041 73 8 0 294 366 708501230 708501158 1.540000e-14 91.6
27 TraesCS6D01G128300 chr3B 91.045 67 4 2 221 286 793387817 793387882 5.540000e-14 89.8
28 TraesCS6D01G128300 chr3B 83.721 86 11 3 585 667 169429184 169429269 1.200000e-10 78.7
29 TraesCS6D01G128300 chr3D 84.088 1546 203 24 856 2387 116019399 116020915 0.000000e+00 1452.0
30 TraesCS6D01G128300 chr3D 97.561 287 4 3 1 286 285013832 285014116 4.670000e-134 488.0
31 TraesCS6D01G128300 chr3D 78.415 366 53 20 2891 3235 116021730 116022090 8.760000e-52 215.0
32 TraesCS6D01G128300 chr3D 84.252 127 19 1 597 722 116015988 116016114 5.460000e-24 122.0
33 TraesCS6D01G128300 chr3A 84.518 1421 184 23 866 2273 112925867 112927264 0.000000e+00 1373.0
34 TraesCS6D01G128300 chr3A 81.726 197 17 8 3134 3312 112936298 112936493 3.240000e-31 147.0
35 TraesCS6D01G128300 chr3A 85.156 128 16 3 597 722 112925572 112925698 1.170000e-25 128.0
36 TraesCS6D01G128300 chr3A 89.041 73 8 0 294 366 609020097 609020169 1.540000e-14 91.6
37 TraesCS6D01G128300 chr3A 91.045 67 4 2 221 286 410124996 410125061 5.540000e-14 89.8
38 TraesCS6D01G128300 chr7D 98.606 287 3 1 1 286 60212794 60212508 1.290000e-139 507.0
39 TraesCS6D01G128300 chr2D 97.552 286 6 1 1 286 93743398 93743682 4.670000e-134 488.0
40 TraesCS6D01G128300 chr4B 95.804 286 8 4 1 286 652264684 652264965 3.660000e-125 459.0
41 TraesCS6D01G128300 chr7A 95.122 287 9 5 1 287 435694496 435694777 7.930000e-122 448.0
42 TraesCS6D01G128300 chr7A 86.585 82 10 1 286 366 519575430 519575511 5.540000e-14 89.8
43 TraesCS6D01G128300 chr7A 84.932 73 11 0 294 366 43179906 43179834 1.550000e-09 75.0
44 TraesCS6D01G128300 chr5A 94.628 242 11 2 1 242 650184714 650184475 1.370000e-99 374.0
45 TraesCS6D01G128300 chr5A 97.500 40 1 0 327 366 680579238 680579199 7.220000e-08 69.4
46 TraesCS6D01G128300 chr7B 80.513 195 26 5 93 286 501553484 501553301 5.420000e-29 139.0
47 TraesCS6D01G128300 chr4D 85.542 83 10 2 286 366 479379189 479379107 7.170000e-13 86.1
48 TraesCS6D01G128300 chrUn 100.000 42 0 0 245 286 377699137 377699096 1.200000e-10 78.7
49 TraesCS6D01G128300 chr1A 90.196 51 5 0 3605 3655 522240324 522240374 2.600000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G128300 chr6D 93433115 93437138 4023 False 1579.600000 7432 97.793200 1 4024 5 chr6D.!!$F1 4023
1 TraesCS6D01G128300 chr6D 96648672 96650921 2249 True 931.500000 1676 84.770500 559 2852 2 chr6D.!!$R2 2293
2 TraesCS6D01G128300 chr6D 96642024 96644258 2234 True 637.000000 1345 84.688000 545 2846 3 chr6D.!!$R1 2301
3 TraesCS6D01G128300 chr6B 179656242 179660050 3808 True 877.600000 2654 91.143400 383 3572 5 chr6B.!!$R1 3189
4 TraesCS6D01G128300 chr6A 115338374 115341638 3264 True 1037.666667 1389 89.943333 1444 3973 3 chr6A.!!$R1 2529
5 TraesCS6D01G128300 chr6A 115346376 115348247 1871 True 848.000000 1546 83.383500 383 2328 2 chr6A.!!$R2 1945
6 TraesCS6D01G128300 chr3B 169429184 169432114 2930 False 472.675000 1454 82.687500 585 3235 4 chr3B.!!$F3 2650
7 TraesCS6D01G128300 chr3D 116015988 116022090 6102 False 596.333333 1452 82.251667 597 3235 3 chr3D.!!$F2 2638
8 TraesCS6D01G128300 chr3A 112925572 112927264 1692 False 750.500000 1373 84.837000 597 2273 2 chr3A.!!$F4 1676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 4201 0.029300 CCCTGTTGTTGTTGCAGACG 59.971 55.000 0.00 0.0 32.39 4.18 F
1130 4355 1.306141 TCTGCCGATCCTGGAGGTT 60.306 57.895 1.52 0.0 36.34 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2504 5765 0.107945 GGTTGCCCAAAACTGCAACA 60.108 50.0 23.63 0.0 42.7 3.33 R
3089 7347 0.734942 CGCAGCCTTCCAAATGCAAG 60.735 55.0 0.00 0.0 38.6 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.882311 TGCTCCGCGCATGAAAATT 59.118 47.368 8.75 0.00 45.47 1.82
24 25 0.243365 TGCTCCGCGCATGAAAATTT 59.757 45.000 8.75 0.00 45.47 1.82
25 26 1.470494 TGCTCCGCGCATGAAAATTTA 59.530 42.857 8.75 0.00 45.47 1.40
26 27 2.098934 TGCTCCGCGCATGAAAATTTAT 59.901 40.909 8.75 0.00 45.47 1.40
27 28 3.115554 GCTCCGCGCATGAAAATTTATT 58.884 40.909 8.75 0.00 38.92 1.40
28 29 3.551485 GCTCCGCGCATGAAAATTTATTT 59.449 39.130 8.75 0.00 38.92 1.40
30 31 5.445806 GCTCCGCGCATGAAAATTTATTTTT 60.446 36.000 8.75 0.00 38.10 1.94
32 33 5.020758 CCGCGCATGAAAATTTATTTTTGG 58.979 37.500 8.75 0.00 39.86 3.28
33 34 5.163913 CCGCGCATGAAAATTTATTTTTGGA 60.164 36.000 8.75 0.00 39.86 3.53
34 35 6.302615 CGCGCATGAAAATTTATTTTTGGAA 58.697 32.000 8.75 0.00 39.86 3.53
35 36 6.960431 CGCGCATGAAAATTTATTTTTGGAAT 59.040 30.769 8.75 0.00 39.86 3.01
36 37 7.045483 CGCGCATGAAAATTTATTTTTGGAATG 60.045 33.333 8.75 5.98 39.86 2.67
37 38 7.750014 GCGCATGAAAATTTATTTTTGGAATGT 59.250 29.630 0.30 0.00 39.86 2.71
38 39 9.264782 CGCATGAAAATTTATTTTTGGAATGTC 57.735 29.630 0.00 2.54 39.86 3.06
51 52 9.804977 ATTTTTGGAATGTCATAAAATCCCAAA 57.195 25.926 0.00 0.00 39.69 3.28
52 53 9.632638 TTTTTGGAATGTCATAAAATCCCAAAA 57.367 25.926 0.00 0.00 45.19 2.44
53 54 9.632638 TTTTGGAATGTCATAAAATCCCAAAAA 57.367 25.926 11.96 8.06 44.44 1.94
54 55 9.804977 TTTGGAATGTCATAAAATCCCAAAAAT 57.195 25.926 0.00 0.00 38.85 1.82
88 89 8.991243 ATTCAGTCACATATTTTCATGGTTTG 57.009 30.769 0.00 0.00 0.00 2.93
90 91 7.592938 TCAGTCACATATTTTCATGGTTTGTC 58.407 34.615 0.00 0.00 0.00 3.18
92 93 6.429692 AGTCACATATTTTCATGGTTTGTCGA 59.570 34.615 0.00 0.00 0.00 4.20
93 94 7.121168 AGTCACATATTTTCATGGTTTGTCGAT 59.879 33.333 0.00 0.00 0.00 3.59
96 97 9.566530 CACATATTTTCATGGTTTGTCGATTTA 57.433 29.630 0.00 0.00 0.00 1.40
120 121 5.947503 AAAATTGTTGTGTGTGTGAATCG 57.052 34.783 0.00 0.00 0.00 3.34
121 122 4.630894 AATTGTTGTGTGTGTGAATCGT 57.369 36.364 0.00 0.00 0.00 3.73
122 123 5.743026 AATTGTTGTGTGTGTGAATCGTA 57.257 34.783 0.00 0.00 0.00 3.43
123 124 4.523853 TTGTTGTGTGTGTGAATCGTAC 57.476 40.909 0.00 0.00 0.00 3.67
124 125 3.522553 TGTTGTGTGTGTGAATCGTACA 58.477 40.909 0.00 0.00 0.00 2.90
125 126 4.123506 TGTTGTGTGTGTGAATCGTACAT 58.876 39.130 0.00 0.00 0.00 2.29
126 127 4.572795 TGTTGTGTGTGTGAATCGTACATT 59.427 37.500 0.00 0.00 0.00 2.71
127 128 4.723879 TGTGTGTGTGAATCGTACATTG 57.276 40.909 0.00 0.00 0.00 2.82
128 129 3.059257 TGTGTGTGTGAATCGTACATTGC 60.059 43.478 0.00 0.00 0.00 3.56
129 130 3.059257 GTGTGTGTGAATCGTACATTGCA 60.059 43.478 0.00 0.00 0.00 4.08
130 131 3.059257 TGTGTGTGAATCGTACATTGCAC 60.059 43.478 0.00 0.00 0.00 4.57
131 132 3.186409 GTGTGTGAATCGTACATTGCACT 59.814 43.478 5.11 0.00 0.00 4.40
132 133 3.431912 TGTGTGAATCGTACATTGCACTC 59.568 43.478 5.11 2.69 0.00 3.51
133 134 3.679980 GTGTGAATCGTACATTGCACTCT 59.320 43.478 5.11 0.00 0.00 3.24
134 135 3.926527 TGTGAATCGTACATTGCACTCTC 59.073 43.478 5.11 0.00 0.00 3.20
135 136 3.926527 GTGAATCGTACATTGCACTCTCA 59.073 43.478 0.00 0.00 0.00 3.27
136 137 4.568359 GTGAATCGTACATTGCACTCTCAT 59.432 41.667 0.00 0.00 0.00 2.90
137 138 4.567959 TGAATCGTACATTGCACTCTCATG 59.432 41.667 0.00 0.00 0.00 3.07
138 139 2.270923 TCGTACATTGCACTCTCATGC 58.729 47.619 0.00 0.00 46.32 4.06
139 140 2.094026 TCGTACATTGCACTCTCATGCT 60.094 45.455 0.00 0.00 46.28 3.79
140 141 2.674852 CGTACATTGCACTCTCATGCTT 59.325 45.455 0.00 0.00 46.28 3.91
141 142 3.865164 CGTACATTGCACTCTCATGCTTA 59.135 43.478 0.00 0.00 46.28 3.09
142 143 4.329801 CGTACATTGCACTCTCATGCTTAA 59.670 41.667 0.00 0.00 46.28 1.85
143 144 5.163864 CGTACATTGCACTCTCATGCTTAAA 60.164 40.000 0.00 0.00 46.28 1.52
144 145 5.051891 ACATTGCACTCTCATGCTTAAAC 57.948 39.130 0.00 0.00 46.28 2.01
145 146 4.082571 ACATTGCACTCTCATGCTTAAACC 60.083 41.667 0.00 0.00 46.28 3.27
146 147 2.076100 TGCACTCTCATGCTTAAACCG 58.924 47.619 0.00 0.00 46.28 4.44
147 148 2.076863 GCACTCTCATGCTTAAACCGT 58.923 47.619 0.00 0.00 42.62 4.83
148 149 2.484264 GCACTCTCATGCTTAAACCGTT 59.516 45.455 0.00 0.00 42.62 4.44
149 150 3.682858 GCACTCTCATGCTTAAACCGTTA 59.317 43.478 0.00 0.00 42.62 3.18
150 151 4.201724 GCACTCTCATGCTTAAACCGTTAG 60.202 45.833 0.00 0.00 42.62 2.34
151 152 4.330074 CACTCTCATGCTTAAACCGTTAGG 59.670 45.833 0.00 0.00 45.13 2.69
152 153 3.267483 TCTCATGCTTAAACCGTTAGGC 58.733 45.455 0.00 0.00 41.47 3.93
153 154 2.354821 CTCATGCTTAAACCGTTAGGCC 59.645 50.000 0.00 0.00 40.64 5.19
154 155 1.404035 CATGCTTAAACCGTTAGGCCC 59.596 52.381 0.00 0.00 40.64 5.80
155 156 0.400975 TGCTTAAACCGTTAGGCCCA 59.599 50.000 0.00 0.00 40.64 5.36
156 157 1.004979 TGCTTAAACCGTTAGGCCCAT 59.995 47.619 0.00 0.00 40.64 4.00
157 158 1.404035 GCTTAAACCGTTAGGCCCATG 59.596 52.381 0.00 0.00 42.76 3.66
158 159 2.942306 GCTTAAACCGTTAGGCCCATGA 60.942 50.000 0.00 0.00 42.76 3.07
159 160 3.551846 CTTAAACCGTTAGGCCCATGAT 58.448 45.455 0.00 0.00 42.76 2.45
160 161 4.710324 CTTAAACCGTTAGGCCCATGATA 58.290 43.478 0.00 0.00 42.76 2.15
161 162 2.632987 AACCGTTAGGCCCATGATAC 57.367 50.000 0.00 0.00 42.76 2.24
162 163 0.763035 ACCGTTAGGCCCATGATACC 59.237 55.000 0.00 0.00 42.76 2.73
163 164 0.036306 CCGTTAGGCCCATGATACCC 59.964 60.000 0.00 0.00 0.00 3.69
164 165 1.056660 CGTTAGGCCCATGATACCCT 58.943 55.000 0.00 0.00 0.00 4.34
165 166 2.253610 CGTTAGGCCCATGATACCCTA 58.746 52.381 0.00 0.00 0.00 3.53
166 167 2.838202 CGTTAGGCCCATGATACCCTAT 59.162 50.000 0.00 0.00 30.57 2.57
167 168 3.263425 CGTTAGGCCCATGATACCCTATT 59.737 47.826 0.00 0.00 30.57 1.73
168 169 4.263331 CGTTAGGCCCATGATACCCTATTT 60.263 45.833 0.00 0.00 30.57 1.40
169 170 3.814504 AGGCCCATGATACCCTATTTG 57.185 47.619 0.00 0.00 0.00 2.32
170 171 2.379907 AGGCCCATGATACCCTATTTGG 59.620 50.000 0.00 0.00 0.00 3.28
180 181 3.607871 CCTATTTGGGTGGGGGAAC 57.392 57.895 0.00 0.00 0.00 3.62
181 182 1.007607 CCTATTTGGGTGGGGGAACT 58.992 55.000 0.00 0.00 0.00 3.01
182 183 2.210644 CCTATTTGGGTGGGGGAACTA 58.789 52.381 0.00 0.00 0.00 2.24
183 184 2.583566 CCTATTTGGGTGGGGGAACTAA 59.416 50.000 0.00 0.00 0.00 2.24
184 185 2.919772 ATTTGGGTGGGGGAACTAAG 57.080 50.000 0.00 0.00 0.00 2.18
185 186 1.536644 TTTGGGTGGGGGAACTAAGT 58.463 50.000 0.00 0.00 0.00 2.24
186 187 2.436964 TTGGGTGGGGGAACTAAGTA 57.563 50.000 0.00 0.00 0.00 2.24
187 188 2.436964 TGGGTGGGGGAACTAAGTAA 57.563 50.000 0.00 0.00 0.00 2.24
188 189 2.716023 TGGGTGGGGGAACTAAGTAAA 58.284 47.619 0.00 0.00 0.00 2.01
189 190 3.062129 TGGGTGGGGGAACTAAGTAAAA 58.938 45.455 0.00 0.00 0.00 1.52
190 191 3.466344 TGGGTGGGGGAACTAAGTAAAAA 59.534 43.478 0.00 0.00 0.00 1.94
191 192 4.108287 TGGGTGGGGGAACTAAGTAAAAAT 59.892 41.667 0.00 0.00 0.00 1.82
192 193 4.708421 GGGTGGGGGAACTAAGTAAAAATC 59.292 45.833 0.00 0.00 0.00 2.17
193 194 5.326900 GGTGGGGGAACTAAGTAAAAATCA 58.673 41.667 0.00 0.00 0.00 2.57
194 195 5.776208 GGTGGGGGAACTAAGTAAAAATCAA 59.224 40.000 0.00 0.00 0.00 2.57
195 196 6.439375 GGTGGGGGAACTAAGTAAAAATCAAT 59.561 38.462 0.00 0.00 0.00 2.57
196 197 7.038587 GGTGGGGGAACTAAGTAAAAATCAATT 60.039 37.037 0.00 0.00 0.00 2.32
197 198 8.033038 GTGGGGGAACTAAGTAAAAATCAATTC 58.967 37.037 0.00 0.00 0.00 2.17
198 199 7.094118 TGGGGGAACTAAGTAAAAATCAATTCG 60.094 37.037 0.00 0.00 0.00 3.34
199 200 7.121611 GGGGGAACTAAGTAAAAATCAATTCGA 59.878 37.037 0.00 0.00 0.00 3.71
200 201 8.683615 GGGGAACTAAGTAAAAATCAATTCGAT 58.316 33.333 0.00 0.00 35.12 3.59
259 260 6.834959 AGCATGTGTTATATTTGAGAGACG 57.165 37.500 0.00 0.00 0.00 4.18
260 261 6.341316 AGCATGTGTTATATTTGAGAGACGT 58.659 36.000 0.00 0.00 0.00 4.34
261 262 6.256539 AGCATGTGTTATATTTGAGAGACGTG 59.743 38.462 0.00 0.00 0.00 4.49
262 263 6.036083 GCATGTGTTATATTTGAGAGACGTGT 59.964 38.462 0.00 0.00 0.00 4.49
263 264 6.944557 TGTGTTATATTTGAGAGACGTGTG 57.055 37.500 0.00 0.00 0.00 3.82
264 265 6.452242 TGTGTTATATTTGAGAGACGTGTGT 58.548 36.000 0.00 0.00 0.00 3.72
265 266 6.926826 TGTGTTATATTTGAGAGACGTGTGTT 59.073 34.615 0.00 0.00 0.00 3.32
266 267 7.095816 TGTGTTATATTTGAGAGACGTGTGTTG 60.096 37.037 0.00 0.00 0.00 3.33
267 268 4.928661 ATATTTGAGAGACGTGTGTTGC 57.071 40.909 0.00 0.00 0.00 4.17
268 269 2.017138 TTTGAGAGACGTGTGTTGCA 57.983 45.000 0.00 0.00 0.00 4.08
269 270 1.286501 TTGAGAGACGTGTGTTGCAC 58.713 50.000 0.00 0.00 44.36 4.57
285 286 1.359848 GCACGTGCATGCTTACTAGT 58.640 50.000 34.52 0.00 42.62 2.57
286 287 1.732259 GCACGTGCATGCTTACTAGTT 59.268 47.619 34.52 0.00 42.62 2.24
287 288 2.222819 GCACGTGCATGCTTACTAGTTC 60.223 50.000 34.52 0.00 42.62 3.01
288 289 2.993220 CACGTGCATGCTTACTAGTTCA 59.007 45.455 20.33 0.00 0.00 3.18
289 290 3.061295 CACGTGCATGCTTACTAGTTCAG 59.939 47.826 20.33 0.00 0.00 3.02
290 291 3.254060 CGTGCATGCTTACTAGTTCAGT 58.746 45.455 20.33 0.00 41.62 3.41
291 292 3.061295 CGTGCATGCTTACTAGTTCAGTG 59.939 47.826 20.33 0.00 38.24 3.66
292 293 4.245660 GTGCATGCTTACTAGTTCAGTGA 58.754 43.478 20.33 0.00 38.24 3.41
293 294 4.690748 GTGCATGCTTACTAGTTCAGTGAA 59.309 41.667 20.33 0.08 38.24 3.18
294 295 4.931601 TGCATGCTTACTAGTTCAGTGAAG 59.068 41.667 20.33 0.00 38.24 3.02
295 296 4.331168 GCATGCTTACTAGTTCAGTGAAGG 59.669 45.833 11.37 2.53 38.24 3.46
296 297 5.724328 CATGCTTACTAGTTCAGTGAAGGA 58.276 41.667 5.62 0.00 38.24 3.36
297 298 5.392767 TGCTTACTAGTTCAGTGAAGGAG 57.607 43.478 5.62 8.94 38.24 3.69
298 299 5.077564 TGCTTACTAGTTCAGTGAAGGAGA 58.922 41.667 17.09 0.00 38.24 3.71
299 300 5.717178 TGCTTACTAGTTCAGTGAAGGAGAT 59.283 40.000 17.09 7.28 38.24 2.75
300 301 6.039616 GCTTACTAGTTCAGTGAAGGAGATG 58.960 44.000 17.09 9.47 38.24 2.90
301 302 6.350612 GCTTACTAGTTCAGTGAAGGAGATGT 60.351 42.308 17.09 9.01 38.24 3.06
302 303 7.540474 TTACTAGTTCAGTGAAGGAGATGTT 57.460 36.000 17.09 2.09 38.24 2.71
303 304 6.031751 ACTAGTTCAGTGAAGGAGATGTTC 57.968 41.667 17.09 0.00 35.62 3.18
304 305 5.046950 ACTAGTTCAGTGAAGGAGATGTTCC 60.047 44.000 17.09 0.00 40.44 3.62
305 306 7.981517 ACTAGTTCAGTGAAGGAGATGTTCCC 61.982 46.154 17.09 0.00 40.80 3.97
313 314 2.691409 GGAGATGTTCCCGTTGATGA 57.309 50.000 0.00 0.00 40.37 2.92
314 315 2.280628 GGAGATGTTCCCGTTGATGAC 58.719 52.381 0.00 0.00 40.37 3.06
329 330 6.287107 GTTGATGACGAGGTATTTATGGTG 57.713 41.667 0.00 0.00 0.00 4.17
330 331 5.862678 TGATGACGAGGTATTTATGGTGA 57.137 39.130 0.00 0.00 0.00 4.02
331 332 6.419484 TGATGACGAGGTATTTATGGTGAT 57.581 37.500 0.00 0.00 0.00 3.06
332 333 6.826668 TGATGACGAGGTATTTATGGTGATT 58.173 36.000 0.00 0.00 0.00 2.57
333 334 7.279615 TGATGACGAGGTATTTATGGTGATTT 58.720 34.615 0.00 0.00 0.00 2.17
334 335 7.441157 TGATGACGAGGTATTTATGGTGATTTC 59.559 37.037 0.00 0.00 0.00 2.17
335 336 5.751509 TGACGAGGTATTTATGGTGATTTCG 59.248 40.000 0.00 0.00 0.00 3.46
336 337 5.667466 ACGAGGTATTTATGGTGATTTCGT 58.333 37.500 0.00 0.00 33.33 3.85
337 338 6.808829 ACGAGGTATTTATGGTGATTTCGTA 58.191 36.000 0.00 0.00 36.02 3.43
338 339 7.267128 ACGAGGTATTTATGGTGATTTCGTAA 58.733 34.615 0.00 0.00 36.02 3.18
339 340 7.765360 ACGAGGTATTTATGGTGATTTCGTAAA 59.235 33.333 0.00 0.00 36.02 2.01
340 341 8.770828 CGAGGTATTTATGGTGATTTCGTAAAT 58.229 33.333 0.00 0.00 38.81 1.40
357 358 9.658475 TTTCGTAAATTTAAAGATGATATGCCG 57.342 29.630 0.00 0.00 0.00 5.69
358 359 7.802738 TCGTAAATTTAAAGATGATATGCCGG 58.197 34.615 0.00 0.00 0.00 6.13
359 360 6.523201 CGTAAATTTAAAGATGATATGCCGGC 59.477 38.462 22.73 22.73 0.00 6.13
360 361 6.655078 AAATTTAAAGATGATATGCCGGCT 57.345 33.333 29.70 15.76 0.00 5.52
361 362 5.886960 ATTTAAAGATGATATGCCGGCTC 57.113 39.130 29.70 17.89 0.00 4.70
362 363 2.936919 AAAGATGATATGCCGGCTCA 57.063 45.000 29.70 23.34 0.00 4.26
363 364 2.469274 AAGATGATATGCCGGCTCAG 57.531 50.000 29.70 0.00 0.00 3.35
364 365 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
365 366 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
366 367 0.037882 ATGATATGCCGGCTCAGTCG 60.038 55.000 29.70 0.00 0.00 4.18
372 373 4.803426 CCGGCTCAGTCGGTGCTC 62.803 72.222 10.43 0.00 46.58 4.26
373 374 4.056125 CGGCTCAGTCGGTGCTCA 62.056 66.667 0.00 0.00 36.29 4.26
374 375 2.581354 GGCTCAGTCGGTGCTCAT 59.419 61.111 0.00 0.00 36.29 2.90
375 376 1.816537 GGCTCAGTCGGTGCTCATA 59.183 57.895 0.00 0.00 36.29 2.15
376 377 0.249238 GGCTCAGTCGGTGCTCATAG 60.249 60.000 0.00 0.00 36.29 2.23
377 378 0.249238 GCTCAGTCGGTGCTCATAGG 60.249 60.000 0.00 0.00 33.29 2.57
378 379 0.387202 CTCAGTCGGTGCTCATAGGG 59.613 60.000 0.00 0.00 0.00 3.53
379 380 1.043116 TCAGTCGGTGCTCATAGGGG 61.043 60.000 0.00 0.00 0.00 4.79
380 381 2.109181 GTCGGTGCTCATAGGGGC 59.891 66.667 0.00 0.00 0.00 5.80
381 382 3.536917 TCGGTGCTCATAGGGGCG 61.537 66.667 0.00 0.00 0.00 6.13
475 476 4.500116 GCCCGCGACTCCAGTCTC 62.500 72.222 8.23 0.00 42.66 3.36
476 477 3.827898 CCCGCGACTCCAGTCTCC 61.828 72.222 8.23 0.00 42.66 3.71
477 478 3.062466 CCGCGACTCCAGTCTCCA 61.062 66.667 8.23 0.00 42.66 3.86
478 479 2.179517 CGCGACTCCAGTCTCCAC 59.820 66.667 0.00 0.00 42.66 4.02
479 480 2.336478 CGCGACTCCAGTCTCCACT 61.336 63.158 0.00 0.00 42.66 4.00
480 481 1.509004 GCGACTCCAGTCTCCACTC 59.491 63.158 5.21 0.00 42.66 3.51
481 482 1.797441 CGACTCCAGTCTCCACTCG 59.203 63.158 5.21 0.00 42.66 4.18
482 483 0.956410 CGACTCCAGTCTCCACTCGT 60.956 60.000 5.21 0.00 42.66 4.18
483 484 0.806241 GACTCCAGTCTCCACTCGTC 59.194 60.000 0.00 0.00 41.65 4.20
484 485 0.110678 ACTCCAGTCTCCACTCGTCA 59.889 55.000 0.00 0.00 0.00 4.35
485 486 0.523966 CTCCAGTCTCCACTCGTCAC 59.476 60.000 0.00 0.00 0.00 3.67
486 487 0.110678 TCCAGTCTCCACTCGTCACT 59.889 55.000 0.00 0.00 0.00 3.41
487 488 0.242286 CCAGTCTCCACTCGTCACTG 59.758 60.000 0.00 0.00 35.27 3.66
488 489 0.387878 CAGTCTCCACTCGTCACTGC 60.388 60.000 0.00 0.00 0.00 4.40
489 490 0.538516 AGTCTCCACTCGTCACTGCT 60.539 55.000 0.00 0.00 0.00 4.24
490 491 0.109504 GTCTCCACTCGTCACTGCTC 60.110 60.000 0.00 0.00 0.00 4.26
491 492 1.214062 CTCCACTCGTCACTGCTCC 59.786 63.158 0.00 0.00 0.00 4.70
492 493 2.219325 CTCCACTCGTCACTGCTCCC 62.219 65.000 0.00 0.00 0.00 4.30
493 494 2.126307 CACTCGTCACTGCTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
494 495 4.057428 ACTCGTCACTGCTCCCGC 62.057 66.667 0.00 0.00 0.00 6.13
519 520 3.217743 CCGGGGACTAGGCGACTC 61.218 72.222 0.00 0.00 43.67 3.36
520 521 2.124236 CGGGGACTAGGCGACTCT 60.124 66.667 0.00 0.00 43.67 3.24
521 522 1.147824 CGGGGACTAGGCGACTCTA 59.852 63.158 0.00 0.00 43.67 2.43
522 523 0.885596 CGGGGACTAGGCGACTCTAG 60.886 65.000 0.00 0.00 43.67 2.43
527 528 2.625695 ACTAGGCGACTCTAGTCTCC 57.374 55.000 10.54 10.54 44.62 3.71
530 531 3.178325 GGCGACTCTAGTCTCCACT 57.822 57.895 13.09 0.00 46.33 4.00
531 532 1.018910 GGCGACTCTAGTCTCCACTC 58.981 60.000 13.09 0.00 46.33 3.51
532 533 0.653636 GCGACTCTAGTCTCCACTCG 59.346 60.000 8.41 0.00 42.66 4.18
533 534 2.008045 GCGACTCTAGTCTCCACTCGT 61.008 57.143 8.41 0.00 42.66 4.18
534 535 1.928503 CGACTCTAGTCTCCACTCGTC 59.071 57.143 8.41 0.00 42.66 4.20
535 536 2.674462 CGACTCTAGTCTCCACTCGTCA 60.674 54.545 8.41 0.00 42.66 4.35
536 537 2.674357 GACTCTAGTCTCCACTCGTCAC 59.326 54.545 2.81 0.00 41.65 3.67
537 538 2.303600 ACTCTAGTCTCCACTCGTCACT 59.696 50.000 0.00 0.00 33.62 3.41
538 539 2.675844 CTCTAGTCTCCACTCGTCACTG 59.324 54.545 0.00 0.00 33.62 3.66
539 540 1.131504 CTAGTCTCCACTCGTCACTGC 59.868 57.143 0.00 0.00 33.62 4.40
540 541 0.538516 AGTCTCCACTCGTCACTGCT 60.539 55.000 0.00 0.00 0.00 4.24
541 542 0.109504 GTCTCCACTCGTCACTGCTC 60.110 60.000 0.00 0.00 0.00 4.26
542 543 1.214062 CTCCACTCGTCACTGCTCC 59.786 63.158 0.00 0.00 0.00 4.70
543 544 2.219325 CTCCACTCGTCACTGCTCCC 62.219 65.000 0.00 0.00 0.00 4.30
626 627 4.240103 CTCGCCGCCATCCATCCA 62.240 66.667 0.00 0.00 0.00 3.41
658 659 4.694233 CTGCGCACCTCACCAGCT 62.694 66.667 5.66 0.00 0.00 4.24
725 728 1.227853 CGCCGCTTAAGCCCCTATT 60.228 57.895 21.53 0.00 37.91 1.73
726 729 0.034337 CGCCGCTTAAGCCCCTATTA 59.966 55.000 21.53 0.00 37.91 0.98
802 850 5.526111 CACCTACTAATTTCATAACCCCGTG 59.474 44.000 0.00 0.00 0.00 4.94
819 867 0.323360 GTGGTCATAGGCAAGGGCAA 60.323 55.000 0.00 0.00 43.71 4.52
821 869 1.849692 TGGTCATAGGCAAGGGCAATA 59.150 47.619 0.00 0.00 43.71 1.90
822 870 2.230660 GGTCATAGGCAAGGGCAATAC 58.769 52.381 0.00 0.00 43.71 1.89
840 3994 6.672147 GCAATACAATGCAATAGACCTAAGG 58.328 40.000 0.00 0.00 45.70 2.69
841 3995 6.294176 GCAATACAATGCAATAGACCTAAGGG 60.294 42.308 0.00 0.00 45.70 3.95
943 4131 1.202290 CGCCTGATTATTGGGCAACAC 60.202 52.381 9.27 0.00 45.50 3.32
976 4201 0.029300 CCCTGTTGTTGTTGCAGACG 59.971 55.000 0.00 0.00 32.39 4.18
1130 4355 1.306141 TCTGCCGATCCTGGAGGTT 60.306 57.895 1.52 0.00 36.34 3.50
1314 4545 3.511595 CGCACATGCCGCTTGGAT 61.512 61.111 10.71 0.00 37.91 3.41
1329 4560 4.393062 CGCTTGGATCTTATTTGTGTCACT 59.607 41.667 4.27 0.00 0.00 3.41
1522 4753 6.701841 TGTCAGCTTCGATAATTCCAATAGTC 59.298 38.462 0.00 0.00 0.00 2.59
1528 4759 5.769367 TCGATAATTCCAATAGTCAGTCCG 58.231 41.667 0.00 0.00 0.00 4.79
1529 4760 5.533528 TCGATAATTCCAATAGTCAGTCCGA 59.466 40.000 0.00 0.00 0.00 4.55
1532 4763 2.526888 TCCAATAGTCAGTCCGACCT 57.473 50.000 0.00 0.00 46.69 3.85
1534 4765 1.825474 CCAATAGTCAGTCCGACCTGT 59.175 52.381 0.00 0.00 46.69 4.00
1615 4846 4.301027 CTCCGGCCCCTATCGCAC 62.301 72.222 0.00 0.00 0.00 5.34
1619 4850 2.338984 GGCCCCTATCGCACGTAG 59.661 66.667 0.00 0.00 0.00 3.51
1641 4872 3.426426 GGCGTGACAAAAGTGTTGTTGTA 60.426 43.478 0.00 0.00 38.41 2.41
1652 4883 4.932146 AGTGTTGTTGTAAATGGAGTTGC 58.068 39.130 0.00 0.00 0.00 4.17
1654 4885 3.068873 TGTTGTTGTAAATGGAGTTGCCC 59.931 43.478 0.00 0.00 34.97 5.36
1756 4999 1.419387 CAGAGGAGTGGATGGGGATTC 59.581 57.143 0.00 0.00 0.00 2.52
1857 5100 2.722094 TCACTGGTATGTTTGGATGGC 58.278 47.619 0.00 0.00 0.00 4.40
1888 5134 2.837498 TGGCACACGATCCTGAATATG 58.163 47.619 0.00 0.00 0.00 1.78
2083 5329 6.780457 AGACTTACATTGATTTTGGGATGG 57.220 37.500 0.00 0.00 0.00 3.51
2165 5411 4.021104 CACTTCTGAGGTGAGTGTTATCCA 60.021 45.833 14.07 0.00 36.89 3.41
2186 5433 7.062749 TCCACTTATCCTCGTATATTTTGCT 57.937 36.000 0.00 0.00 0.00 3.91
2216 5470 4.530710 TGTATGGTTGTCCTGTCAGTAC 57.469 45.455 0.00 0.00 34.23 2.73
2307 5565 7.889589 AAAGAATTGTAGGTGCATTTTTAGC 57.110 32.000 0.00 0.00 0.00 3.09
2342 5600 2.222886 GCAGTGTCATAGTTGTGATGCG 60.223 50.000 0.00 0.00 0.00 4.73
2467 5727 6.903516 TGGTCATTAGGTCTGATTGATGATT 58.096 36.000 3.97 0.00 0.00 2.57
2543 5870 3.009143 ACCGCAGATTATAATCCCTTCCC 59.991 47.826 19.67 3.98 36.04 3.97
2548 5875 6.265422 CGCAGATTATAATCCCTTCCCTTTTT 59.735 38.462 19.67 0.00 36.04 1.94
2551 5878 9.301897 CAGATTATAATCCCTTCCCTTTTTAGG 57.698 37.037 19.67 0.00 36.04 2.69
2561 5889 6.070995 CCCTTCCCTTTTTAGGTGGAAATTAC 60.071 42.308 0.00 0.00 36.50 1.89
2592 5920 8.965172 GCATTGATAAATTTAGAATGCTGACTG 58.035 33.333 29.40 12.47 43.56 3.51
2667 5998 6.437477 AGAGTATCACATGTAAGAAGTGTCCA 59.563 38.462 0.00 0.00 37.82 4.02
2760 6094 3.368248 TGGTCGCTACAAACCTACCTAT 58.632 45.455 0.00 0.00 36.47 2.57
2830 6164 8.495949 CGTCCTATTTATATGCTGTTGGTTAAG 58.504 37.037 0.00 0.00 0.00 1.85
2868 6365 8.731275 TGACAGGTTATCTACATTTTATGGTG 57.269 34.615 0.00 0.00 33.60 4.17
2869 6366 8.325787 TGACAGGTTATCTACATTTTATGGTGT 58.674 33.333 0.00 0.00 33.60 4.16
2870 6367 9.826574 GACAGGTTATCTACATTTTATGGTGTA 57.173 33.333 0.00 0.00 33.60 2.90
2872 6369 9.052759 CAGGTTATCTACATTTTATGGTGTACC 57.947 37.037 0.00 0.00 33.60 3.34
2873 6370 8.215736 AGGTTATCTACATTTTATGGTGTACCC 58.784 37.037 0.00 0.00 34.29 3.69
2874 6371 7.446319 GGTTATCTACATTTTATGGTGTACCCC 59.554 40.741 0.00 0.00 34.29 4.95
2878 6375 7.471890 TCTACATTTTATGGTGTACCCCTTTT 58.528 34.615 0.00 0.00 34.29 2.27
2963 7208 1.555075 TGCTATTTCACCCTCGAAGCT 59.445 47.619 2.09 0.00 0.00 3.74
2971 7216 3.797039 TCACCCTCGAAGCTGATAAATG 58.203 45.455 0.00 0.00 0.00 2.32
3050 7296 3.263941 GCATCTTTTCGCCACGGT 58.736 55.556 0.00 0.00 0.00 4.83
3089 7347 0.248215 GTATGCAGCGCACACCATTC 60.248 55.000 11.47 0.41 43.04 2.67
3290 7562 5.811399 TGGTACGGAAGAAAATATGCTTG 57.189 39.130 0.00 0.00 0.00 4.01
3438 7711 0.313043 GCCTAGCGTCGCCTATAACA 59.687 55.000 14.86 0.00 0.00 2.41
3451 7724 3.679083 GCCTATAACAGTCGGAACAAGCT 60.679 47.826 0.00 0.00 0.00 3.74
3498 7771 7.020602 CAGGATTTTGTTGTTTGTTTTTGACC 58.979 34.615 0.00 0.00 0.00 4.02
3520 7793 3.389925 TGTTCCAAAGTAGTGTACGGG 57.610 47.619 0.00 0.00 0.00 5.28
3553 7826 5.871396 ATACCGTGATGAACCTGATAAGT 57.129 39.130 0.00 0.00 0.00 2.24
3554 7827 4.553330 ACCGTGATGAACCTGATAAGTT 57.447 40.909 0.00 0.00 0.00 2.66
3624 7900 5.728351 TTTCGAACAAACTTGACCTACTG 57.272 39.130 0.00 0.00 0.00 2.74
3625 7901 3.724374 TCGAACAAACTTGACCTACTGG 58.276 45.455 0.00 0.00 39.83 4.00
3626 7902 2.223377 CGAACAAACTTGACCTACTGGC 59.777 50.000 0.00 0.00 36.63 4.85
3627 7903 1.878953 ACAAACTTGACCTACTGGCG 58.121 50.000 0.00 0.00 36.63 5.69
3628 7904 1.140252 ACAAACTTGACCTACTGGCGT 59.860 47.619 0.00 0.00 36.63 5.68
3629 7905 2.366266 ACAAACTTGACCTACTGGCGTA 59.634 45.455 0.00 0.00 36.63 4.42
3630 7906 2.735134 CAAACTTGACCTACTGGCGTAC 59.265 50.000 0.00 0.00 36.63 3.67
3631 7907 1.920610 ACTTGACCTACTGGCGTACT 58.079 50.000 0.00 0.00 36.63 2.73
3632 7908 1.817447 ACTTGACCTACTGGCGTACTC 59.183 52.381 0.00 0.00 36.63 2.59
3633 7909 0.806868 TTGACCTACTGGCGTACTCG 59.193 55.000 0.00 0.00 36.63 4.18
3634 7910 0.321919 TGACCTACTGGCGTACTCGT 60.322 55.000 0.00 0.00 39.49 4.18
3642 7918 6.183360 ACCTACTGGCGTACTCGTATAAAAAT 60.183 38.462 0.00 0.00 39.49 1.82
3854 8164 9.928236 CGTGATTTTTCAACCATTTTTACAATT 57.072 25.926 0.00 0.00 0.00 2.32
3883 8193 4.688511 TTTAAACGGGTGCACATACATC 57.311 40.909 20.43 0.00 0.00 3.06
3898 8208 4.825085 ACATACATCTGGTTCCAAACGTTT 59.175 37.500 7.96 7.96 0.00 3.60
3940 8258 7.015584 TCCTCTGCATACATAATACACACTCAT 59.984 37.037 0.00 0.00 0.00 2.90
3941 8259 7.330454 CCTCTGCATACATAATACACACTCATC 59.670 40.741 0.00 0.00 0.00 2.92
3952 8270 9.996554 ATAATACACACTCATCGGAATCAAATA 57.003 29.630 0.00 0.00 0.00 1.40
3976 8294 7.684062 ATATAAATCAACTGACAAAATGCGC 57.316 32.000 0.00 0.00 0.00 6.09
3977 8295 3.367992 AATCAACTGACAAAATGCGCA 57.632 38.095 14.96 14.96 0.00 6.09
3978 8296 2.118228 TCAACTGACAAAATGCGCAC 57.882 45.000 14.90 0.00 0.00 5.34
3979 8297 1.403323 TCAACTGACAAAATGCGCACA 59.597 42.857 14.90 3.62 0.00 4.57
3980 8298 1.518102 CAACTGACAAAATGCGCACAC 59.482 47.619 14.90 1.01 0.00 3.82
3981 8299 0.030638 ACTGACAAAATGCGCACACC 59.969 50.000 14.90 0.00 0.00 4.16
3982 8300 0.664166 CTGACAAAATGCGCACACCC 60.664 55.000 14.90 0.20 0.00 4.61
3983 8301 1.361993 GACAAAATGCGCACACCCA 59.638 52.632 14.90 0.00 0.00 4.51
3984 8302 0.038343 GACAAAATGCGCACACCCAT 60.038 50.000 14.90 0.00 0.00 4.00
3985 8303 0.392336 ACAAAATGCGCACACCCATT 59.608 45.000 14.90 0.00 33.35 3.16
3986 8304 0.791422 CAAAATGCGCACACCCATTG 59.209 50.000 14.90 8.21 32.40 2.82
3987 8305 0.320596 AAAATGCGCACACCCATTGG 60.321 50.000 14.90 0.00 32.40 3.16
3988 8306 2.784889 AAATGCGCACACCCATTGGC 62.785 55.000 14.90 0.00 32.40 4.52
3991 8309 3.301554 CGCACACCCATTGGCCAA 61.302 61.111 23.00 23.00 33.59 4.52
3992 8310 2.343387 GCACACCCATTGGCCAAC 59.657 61.111 23.27 0.71 33.59 3.77
3993 8311 2.506061 GCACACCCATTGGCCAACA 61.506 57.895 23.27 0.00 33.59 3.33
3994 8312 2.037620 GCACACCCATTGGCCAACAA 62.038 55.000 23.27 0.00 44.54 2.83
3995 8313 0.249826 CACACCCATTGGCCAACAAC 60.250 55.000 23.27 0.00 42.94 3.32
3996 8314 1.370810 CACCCATTGGCCAACAACC 59.629 57.895 23.27 0.00 42.94 3.77
3997 8315 1.074926 ACCCATTGGCCAACAACCA 60.075 52.632 23.27 0.00 42.94 3.67
4006 8324 5.590530 TTGGCCAACAACCAATATATCAC 57.409 39.130 16.05 0.00 42.23 3.06
4007 8325 3.957497 TGGCCAACAACCAATATATCACC 59.043 43.478 0.61 0.00 33.12 4.02
4008 8326 3.957497 GGCCAACAACCAATATATCACCA 59.043 43.478 0.00 0.00 0.00 4.17
4009 8327 4.588528 GGCCAACAACCAATATATCACCAT 59.411 41.667 0.00 0.00 0.00 3.55
4010 8328 5.509501 GGCCAACAACCAATATATCACCATG 60.510 44.000 0.00 0.00 0.00 3.66
4011 8329 5.301551 GCCAACAACCAATATATCACCATGA 59.698 40.000 0.00 0.00 0.00 3.07
4012 8330 6.515531 GCCAACAACCAATATATCACCATGAG 60.516 42.308 0.00 0.00 0.00 2.90
4013 8331 6.772233 CCAACAACCAATATATCACCATGAGA 59.228 38.462 0.00 0.00 0.00 3.27
4014 8332 7.285172 CCAACAACCAATATATCACCATGAGAA 59.715 37.037 0.00 0.00 0.00 2.87
4015 8333 8.685427 CAACAACCAATATATCACCATGAGAAA 58.315 33.333 0.00 0.00 0.00 2.52
4016 8334 9.425248 AACAACCAATATATCACCATGAGAAAT 57.575 29.630 0.00 0.00 0.00 2.17
4017 8335 9.071276 ACAACCAATATATCACCATGAGAAATC 57.929 33.333 0.00 0.00 0.00 2.17
4018 8336 9.070179 CAACCAATATATCACCATGAGAAATCA 57.930 33.333 0.00 0.00 0.00 2.57
4019 8337 9.818270 AACCAATATATCACCATGAGAAATCAT 57.182 29.630 0.00 0.00 0.00 2.45
4020 8338 9.239551 ACCAATATATCACCATGAGAAATCATG 57.760 33.333 10.58 10.58 45.09 3.07
4021 8339 8.188799 CCAATATATCACCATGAGAAATCATGC 58.811 37.037 11.82 0.00 44.39 4.06
4022 8340 8.736244 CAATATATCACCATGAGAAATCATGCA 58.264 33.333 11.82 0.00 44.39 3.96
4023 8341 4.913335 ATCACCATGAGAAATCATGCAC 57.087 40.909 11.82 0.00 44.39 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.297181 AAAATAAATTTTCATGCGCGGAGCAC 62.297 38.462 8.99 0.00 46.71 4.40
5 6 6.360305 AAAATAAATTTTCATGCGCGGAGCA 61.360 36.000 9.27 9.27 45.38 4.26
6 7 4.032786 AAAATAAATTTTCATGCGCGGAGC 59.967 37.500 8.83 0.00 42.89 4.70
7 8 5.701029 AAAATAAATTTTCATGCGCGGAG 57.299 34.783 8.83 0.00 35.18 4.63
8 9 5.163913 CCAAAAATAAATTTTCATGCGCGGA 60.164 36.000 8.83 5.00 39.20 5.54
9 10 5.020758 CCAAAAATAAATTTTCATGCGCGG 58.979 37.500 8.83 0.00 39.20 6.46
11 12 7.750014 ACATTCCAAAAATAAATTTTCATGCGC 59.250 29.630 0.00 0.00 39.20 6.09
12 13 9.264782 GACATTCCAAAAATAAATTTTCATGCG 57.735 29.630 0.00 0.00 39.20 4.73
25 26 9.804977 TTTGGGATTTTATGACATTCCAAAAAT 57.195 25.926 6.64 5.50 39.24 1.82
26 27 9.632638 TTTTGGGATTTTATGACATTCCAAAAA 57.367 25.926 15.90 12.38 44.68 1.94
27 28 9.632638 TTTTTGGGATTTTATGACATTCCAAAA 57.367 25.926 14.77 14.77 45.42 2.44
28 29 9.804977 ATTTTTGGGATTTTATGACATTCCAAA 57.195 25.926 5.25 5.25 40.07 3.28
63 64 8.587608 ACAAACCATGAAAATATGTGACTGAAT 58.412 29.630 0.00 0.00 0.00 2.57
64 65 7.950512 ACAAACCATGAAAATATGTGACTGAA 58.049 30.769 0.00 0.00 0.00 3.02
65 66 7.523293 ACAAACCATGAAAATATGTGACTGA 57.477 32.000 0.00 0.00 0.00 3.41
66 67 6.524239 CGACAAACCATGAAAATATGTGACTG 59.476 38.462 0.00 0.00 0.00 3.51
67 68 6.429692 TCGACAAACCATGAAAATATGTGACT 59.570 34.615 0.00 0.00 0.00 3.41
68 69 6.607689 TCGACAAACCATGAAAATATGTGAC 58.392 36.000 0.00 0.00 0.00 3.67
97 98 5.866633 ACGATTCACACACACAACAATTTTT 59.133 32.000 0.00 0.00 0.00 1.94
98 99 5.406649 ACGATTCACACACACAACAATTTT 58.593 33.333 0.00 0.00 0.00 1.82
99 100 4.992688 ACGATTCACACACACAACAATTT 58.007 34.783 0.00 0.00 0.00 1.82
100 101 4.630894 ACGATTCACACACACAACAATT 57.369 36.364 0.00 0.00 0.00 2.32
102 103 3.933332 TGTACGATTCACACACACAACAA 59.067 39.130 0.00 0.00 0.00 2.83
103 104 3.522553 TGTACGATTCACACACACAACA 58.477 40.909 0.00 0.00 0.00 3.33
104 105 4.725556 ATGTACGATTCACACACACAAC 57.274 40.909 0.00 0.00 0.00 3.32
105 106 4.553742 GCAATGTACGATTCACACACACAA 60.554 41.667 0.00 0.00 0.00 3.33
106 107 3.059257 GCAATGTACGATTCACACACACA 60.059 43.478 0.00 0.00 0.00 3.72
109 110 3.186409 AGTGCAATGTACGATTCACACAC 59.814 43.478 15.33 0.00 0.00 3.82
111 112 3.679980 AGAGTGCAATGTACGATTCACAC 59.320 43.478 0.00 9.82 0.00 3.82
112 113 3.925379 AGAGTGCAATGTACGATTCACA 58.075 40.909 0.00 0.00 0.00 3.58
115 116 4.551603 GCATGAGAGTGCAATGTACGATTC 60.552 45.833 0.00 0.00 44.43 2.52
116 117 3.310774 GCATGAGAGTGCAATGTACGATT 59.689 43.478 0.00 0.00 44.43 3.34
117 118 2.868583 GCATGAGAGTGCAATGTACGAT 59.131 45.455 0.00 0.00 44.43 3.73
118 119 2.270923 GCATGAGAGTGCAATGTACGA 58.729 47.619 0.00 0.00 44.43 3.43
119 120 2.726555 GCATGAGAGTGCAATGTACG 57.273 50.000 0.00 0.00 44.43 3.67
127 128 2.076863 ACGGTTTAAGCATGAGAGTGC 58.923 47.619 0.00 0.00 45.38 4.40
128 129 4.330074 CCTAACGGTTTAAGCATGAGAGTG 59.670 45.833 0.00 0.00 0.00 3.51
129 130 4.504858 CCTAACGGTTTAAGCATGAGAGT 58.495 43.478 0.00 0.00 0.00 3.24
130 131 3.309954 GCCTAACGGTTTAAGCATGAGAG 59.690 47.826 0.00 0.00 0.00 3.20
131 132 3.267483 GCCTAACGGTTTAAGCATGAGA 58.733 45.455 0.00 0.00 0.00 3.27
132 133 2.354821 GGCCTAACGGTTTAAGCATGAG 59.645 50.000 0.00 0.00 0.00 2.90
133 134 2.361789 GGCCTAACGGTTTAAGCATGA 58.638 47.619 0.00 0.00 0.00 3.07
134 135 1.404035 GGGCCTAACGGTTTAAGCATG 59.596 52.381 0.84 0.00 0.00 4.06
135 136 1.004979 TGGGCCTAACGGTTTAAGCAT 59.995 47.619 4.53 0.00 0.00 3.79
136 137 0.400975 TGGGCCTAACGGTTTAAGCA 59.599 50.000 4.53 0.00 0.00 3.91
137 138 1.404035 CATGGGCCTAACGGTTTAAGC 59.596 52.381 4.53 0.00 0.00 3.09
138 139 2.993937 TCATGGGCCTAACGGTTTAAG 58.006 47.619 4.53 0.00 0.00 1.85
139 140 3.655615 ATCATGGGCCTAACGGTTTAA 57.344 42.857 4.53 0.00 0.00 1.52
140 141 3.181452 GGTATCATGGGCCTAACGGTTTA 60.181 47.826 4.53 0.00 0.00 2.01
141 142 2.422377 GGTATCATGGGCCTAACGGTTT 60.422 50.000 4.53 0.00 0.00 3.27
142 143 1.142262 GGTATCATGGGCCTAACGGTT 59.858 52.381 4.53 0.00 0.00 4.44
143 144 0.763035 GGTATCATGGGCCTAACGGT 59.237 55.000 4.53 0.00 0.00 4.83
144 145 0.036306 GGGTATCATGGGCCTAACGG 59.964 60.000 4.53 0.00 0.00 4.44
145 146 1.056660 AGGGTATCATGGGCCTAACG 58.943 55.000 4.53 0.00 0.00 3.18
146 147 4.929146 AATAGGGTATCATGGGCCTAAC 57.071 45.455 4.53 0.00 0.00 2.34
147 148 4.044065 CCAAATAGGGTATCATGGGCCTAA 59.956 45.833 4.53 0.00 0.00 2.69
148 149 3.591527 CCAAATAGGGTATCATGGGCCTA 59.408 47.826 4.53 0.00 0.00 3.93
149 150 2.379907 CCAAATAGGGTATCATGGGCCT 59.620 50.000 4.53 0.00 0.00 5.19
150 151 2.807676 CCAAATAGGGTATCATGGGCC 58.192 52.381 0.00 0.00 0.00 5.80
162 163 1.007607 AGTTCCCCCACCCAAATAGG 58.992 55.000 0.00 0.00 37.03 2.57
163 164 3.268595 ACTTAGTTCCCCCACCCAAATAG 59.731 47.826 0.00 0.00 0.00 1.73
164 165 3.270812 ACTTAGTTCCCCCACCCAAATA 58.729 45.455 0.00 0.00 0.00 1.40
165 166 2.078611 ACTTAGTTCCCCCACCCAAAT 58.921 47.619 0.00 0.00 0.00 2.32
166 167 1.536644 ACTTAGTTCCCCCACCCAAA 58.463 50.000 0.00 0.00 0.00 3.28
167 168 2.436964 TACTTAGTTCCCCCACCCAA 57.563 50.000 0.00 0.00 0.00 4.12
168 169 2.436964 TTACTTAGTTCCCCCACCCA 57.563 50.000 0.00 0.00 0.00 4.51
169 170 3.812611 TTTTACTTAGTTCCCCCACCC 57.187 47.619 0.00 0.00 0.00 4.61
170 171 5.326900 TGATTTTTACTTAGTTCCCCCACC 58.673 41.667 0.00 0.00 0.00 4.61
171 172 6.904463 TTGATTTTTACTTAGTTCCCCCAC 57.096 37.500 0.00 0.00 0.00 4.61
172 173 7.094118 CGAATTGATTTTTACTTAGTTCCCCCA 60.094 37.037 0.00 0.00 0.00 4.96
173 174 7.121611 TCGAATTGATTTTTACTTAGTTCCCCC 59.878 37.037 0.00 0.00 0.00 5.40
174 175 8.047413 TCGAATTGATTTTTACTTAGTTCCCC 57.953 34.615 0.00 0.00 0.00 4.81
233 234 8.177663 CGTCTCTCAAATATAACACATGCTTTT 58.822 33.333 0.00 0.00 0.00 2.27
234 235 7.334421 ACGTCTCTCAAATATAACACATGCTTT 59.666 33.333 0.00 0.00 0.00 3.51
235 236 6.818644 ACGTCTCTCAAATATAACACATGCTT 59.181 34.615 0.00 0.00 0.00 3.91
236 237 6.256539 CACGTCTCTCAAATATAACACATGCT 59.743 38.462 0.00 0.00 0.00 3.79
237 238 6.036083 ACACGTCTCTCAAATATAACACATGC 59.964 38.462 0.00 0.00 0.00 4.06
238 239 7.063426 ACACACGTCTCTCAAATATAACACATG 59.937 37.037 0.00 0.00 0.00 3.21
239 240 7.097192 ACACACGTCTCTCAAATATAACACAT 58.903 34.615 0.00 0.00 0.00 3.21
240 241 6.452242 ACACACGTCTCTCAAATATAACACA 58.548 36.000 0.00 0.00 0.00 3.72
241 242 6.946229 ACACACGTCTCTCAAATATAACAC 57.054 37.500 0.00 0.00 0.00 3.32
242 243 6.128661 GCAACACACGTCTCTCAAATATAACA 60.129 38.462 0.00 0.00 0.00 2.41
243 244 6.128661 TGCAACACACGTCTCTCAAATATAAC 60.129 38.462 0.00 0.00 0.00 1.89
244 245 5.929415 TGCAACACACGTCTCTCAAATATAA 59.071 36.000 0.00 0.00 0.00 0.98
245 246 5.347635 GTGCAACACACGTCTCTCAAATATA 59.652 40.000 0.00 0.00 40.07 0.86
246 247 4.152402 GTGCAACACACGTCTCTCAAATAT 59.848 41.667 0.00 0.00 40.07 1.28
247 248 3.493129 GTGCAACACACGTCTCTCAAATA 59.507 43.478 0.00 0.00 40.07 1.40
248 249 2.287915 GTGCAACACACGTCTCTCAAAT 59.712 45.455 0.00 0.00 40.07 2.32
249 250 1.663643 GTGCAACACACGTCTCTCAAA 59.336 47.619 0.00 0.00 40.07 2.69
250 251 1.286501 GTGCAACACACGTCTCTCAA 58.713 50.000 0.00 0.00 40.07 3.02
251 252 2.971997 GTGCAACACACGTCTCTCA 58.028 52.632 0.00 0.00 40.07 3.27
266 267 1.359848 ACTAGTAAGCATGCACGTGC 58.640 50.000 33.11 33.11 45.38 5.34
267 268 2.993220 TGAACTAGTAAGCATGCACGTG 59.007 45.455 21.98 12.28 0.00 4.49
268 269 3.254060 CTGAACTAGTAAGCATGCACGT 58.746 45.455 21.98 7.14 0.00 4.49
269 270 3.061295 CACTGAACTAGTAAGCATGCACG 59.939 47.826 21.98 3.52 37.60 5.34
270 271 4.245660 TCACTGAACTAGTAAGCATGCAC 58.754 43.478 21.98 10.48 37.60 4.57
271 272 4.535526 TCACTGAACTAGTAAGCATGCA 57.464 40.909 21.98 0.00 37.60 3.96
272 273 4.331168 CCTTCACTGAACTAGTAAGCATGC 59.669 45.833 10.51 10.51 37.60 4.06
273 274 5.724328 TCCTTCACTGAACTAGTAAGCATG 58.276 41.667 0.00 0.00 37.60 4.06
274 275 5.717178 TCTCCTTCACTGAACTAGTAAGCAT 59.283 40.000 0.00 0.00 37.60 3.79
275 276 5.077564 TCTCCTTCACTGAACTAGTAAGCA 58.922 41.667 0.00 0.00 37.60 3.91
276 277 5.646577 TCTCCTTCACTGAACTAGTAAGC 57.353 43.478 0.00 0.00 37.60 3.09
277 278 7.164230 ACATCTCCTTCACTGAACTAGTAAG 57.836 40.000 0.00 0.00 37.60 2.34
278 279 7.309867 GGAACATCTCCTTCACTGAACTAGTAA 60.310 40.741 0.00 0.00 41.61 2.24
279 280 6.153000 GGAACATCTCCTTCACTGAACTAGTA 59.847 42.308 0.00 0.00 41.61 1.82
280 281 5.046950 GGAACATCTCCTTCACTGAACTAGT 60.047 44.000 0.00 0.00 41.61 2.57
281 282 5.415221 GGAACATCTCCTTCACTGAACTAG 58.585 45.833 0.00 0.00 41.61 2.57
282 283 4.223032 GGGAACATCTCCTTCACTGAACTA 59.777 45.833 0.00 0.00 44.68 2.24
283 284 3.008485 GGGAACATCTCCTTCACTGAACT 59.992 47.826 0.00 0.00 44.68 3.01
284 285 3.339141 GGGAACATCTCCTTCACTGAAC 58.661 50.000 0.00 0.00 44.68 3.18
285 286 2.028112 CGGGAACATCTCCTTCACTGAA 60.028 50.000 0.00 0.00 44.68 3.02
286 287 1.550524 CGGGAACATCTCCTTCACTGA 59.449 52.381 0.00 0.00 44.68 3.41
287 288 1.276421 ACGGGAACATCTCCTTCACTG 59.724 52.381 0.00 0.00 44.68 3.66
288 289 1.645710 ACGGGAACATCTCCTTCACT 58.354 50.000 0.00 0.00 44.68 3.41
289 290 2.076863 CAACGGGAACATCTCCTTCAC 58.923 52.381 0.00 0.00 44.68 3.18
290 291 1.974957 TCAACGGGAACATCTCCTTCA 59.025 47.619 0.00 0.00 44.68 3.02
291 292 2.762535 TCAACGGGAACATCTCCTTC 57.237 50.000 0.00 0.00 44.68 3.46
292 293 2.571653 TCATCAACGGGAACATCTCCTT 59.428 45.455 0.00 0.00 44.68 3.36
293 294 2.093447 GTCATCAACGGGAACATCTCCT 60.093 50.000 0.00 0.00 44.68 3.69
294 295 2.280628 GTCATCAACGGGAACATCTCC 58.719 52.381 0.00 0.00 44.54 3.71
306 307 6.046593 TCACCATAAATACCTCGTCATCAAC 58.953 40.000 0.00 0.00 0.00 3.18
307 308 6.228616 TCACCATAAATACCTCGTCATCAA 57.771 37.500 0.00 0.00 0.00 2.57
308 309 5.862678 TCACCATAAATACCTCGTCATCA 57.137 39.130 0.00 0.00 0.00 3.07
309 310 7.359264 CGAAATCACCATAAATACCTCGTCATC 60.359 40.741 0.00 0.00 0.00 2.92
310 311 6.423905 CGAAATCACCATAAATACCTCGTCAT 59.576 38.462 0.00 0.00 0.00 3.06
311 312 5.751509 CGAAATCACCATAAATACCTCGTCA 59.248 40.000 0.00 0.00 0.00 4.35
312 313 5.751990 ACGAAATCACCATAAATACCTCGTC 59.248 40.000 0.00 0.00 30.64 4.20
313 314 5.667466 ACGAAATCACCATAAATACCTCGT 58.333 37.500 0.00 0.00 0.00 4.18
314 315 7.703298 TTACGAAATCACCATAAATACCTCG 57.297 36.000 0.00 0.00 0.00 4.63
331 332 9.658475 CGGCATATCATCTTTAAATTTACGAAA 57.342 29.630 0.00 0.00 0.00 3.46
332 333 8.286800 CCGGCATATCATCTTTAAATTTACGAA 58.713 33.333 0.00 0.00 0.00 3.85
333 334 7.572353 GCCGGCATATCATCTTTAAATTTACGA 60.572 37.037 24.80 0.00 0.00 3.43
334 335 6.523201 GCCGGCATATCATCTTTAAATTTACG 59.477 38.462 24.80 0.00 0.00 3.18
335 336 7.593825 AGCCGGCATATCATCTTTAAATTTAC 58.406 34.615 31.54 0.00 0.00 2.01
336 337 7.446931 TGAGCCGGCATATCATCTTTAAATTTA 59.553 33.333 31.54 0.00 0.00 1.40
337 338 6.265196 TGAGCCGGCATATCATCTTTAAATTT 59.735 34.615 31.54 0.00 0.00 1.82
338 339 5.769662 TGAGCCGGCATATCATCTTTAAATT 59.230 36.000 31.54 0.00 0.00 1.82
339 340 5.316167 TGAGCCGGCATATCATCTTTAAAT 58.684 37.500 31.54 0.06 0.00 1.40
340 341 4.713553 TGAGCCGGCATATCATCTTTAAA 58.286 39.130 31.54 0.00 0.00 1.52
341 342 4.202357 ACTGAGCCGGCATATCATCTTTAA 60.202 41.667 31.54 0.00 0.00 1.52
342 343 3.324846 ACTGAGCCGGCATATCATCTTTA 59.675 43.478 31.54 0.00 0.00 1.85
343 344 2.105477 ACTGAGCCGGCATATCATCTTT 59.895 45.455 31.54 2.38 0.00 2.52
344 345 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
345 346 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
346 347 1.719600 GACTGAGCCGGCATATCATC 58.280 55.000 31.54 16.99 0.00 2.92
347 348 0.037882 CGACTGAGCCGGCATATCAT 60.038 55.000 31.54 13.17 0.00 2.45
348 349 1.363807 CGACTGAGCCGGCATATCA 59.636 57.895 31.54 22.44 0.00 2.15
349 350 1.373497 CCGACTGAGCCGGCATATC 60.373 63.158 31.54 18.63 40.54 1.63
350 351 2.737180 CCGACTGAGCCGGCATAT 59.263 61.111 31.54 8.11 40.54 1.78
356 357 2.004808 TATGAGCACCGACTGAGCCG 62.005 60.000 0.00 0.00 0.00 5.52
357 358 0.249238 CTATGAGCACCGACTGAGCC 60.249 60.000 0.00 0.00 0.00 4.70
358 359 0.249238 CCTATGAGCACCGACTGAGC 60.249 60.000 0.00 0.00 0.00 4.26
359 360 0.387202 CCCTATGAGCACCGACTGAG 59.613 60.000 0.00 0.00 0.00 3.35
360 361 1.043116 CCCCTATGAGCACCGACTGA 61.043 60.000 0.00 0.00 0.00 3.41
361 362 1.443407 CCCCTATGAGCACCGACTG 59.557 63.158 0.00 0.00 0.00 3.51
362 363 2.435693 GCCCCTATGAGCACCGACT 61.436 63.158 0.00 0.00 0.00 4.18
363 364 2.109181 GCCCCTATGAGCACCGAC 59.891 66.667 0.00 0.00 0.00 4.79
364 365 3.536917 CGCCCCTATGAGCACCGA 61.537 66.667 0.00 0.00 0.00 4.69
365 366 3.792053 GACGCCCCTATGAGCACCG 62.792 68.421 0.00 0.00 0.00 4.94
366 367 2.109181 GACGCCCCTATGAGCACC 59.891 66.667 0.00 0.00 0.00 5.01
367 368 1.068250 GAGACGCCCCTATGAGCAC 59.932 63.158 0.00 0.00 0.00 4.40
368 369 1.075970 AGAGACGCCCCTATGAGCA 60.076 57.895 0.00 0.00 0.00 4.26
369 370 1.663173 GAGAGACGCCCCTATGAGC 59.337 63.158 0.00 0.00 0.00 4.26
370 371 1.519751 CGGAGAGACGCCCCTATGAG 61.520 65.000 0.00 0.00 0.00 2.90
371 372 1.528542 CGGAGAGACGCCCCTATGA 60.529 63.158 0.00 0.00 0.00 2.15
372 373 3.043419 CGGAGAGACGCCCCTATG 58.957 66.667 0.00 0.00 0.00 2.23
380 381 4.544689 CTGGCGAGCGGAGAGACG 62.545 72.222 0.00 0.00 0.00 4.18
381 382 3.404141 GACTGGCGAGCGGAGAGAC 62.404 68.421 0.00 0.00 0.00 3.36
406 407 2.047274 CGGAGGCAAAGCGGAAGA 60.047 61.111 0.00 0.00 0.00 2.87
431 432 2.367512 GAGGAGGGGTGGATGCCT 60.368 66.667 0.00 0.00 0.00 4.75
465 466 0.110678 TGACGAGTGGAGACTGGAGT 59.889 55.000 0.00 0.00 32.48 3.85
466 467 0.523966 GTGACGAGTGGAGACTGGAG 59.476 60.000 0.00 0.00 32.48 3.86
467 468 0.110678 AGTGACGAGTGGAGACTGGA 59.889 55.000 0.00 0.00 32.48 3.86
469 470 0.387878 GCAGTGACGAGTGGAGACTG 60.388 60.000 0.00 0.00 37.65 3.51
470 471 0.538516 AGCAGTGACGAGTGGAGACT 60.539 55.000 0.00 0.00 33.98 3.24
471 472 0.109504 GAGCAGTGACGAGTGGAGAC 60.110 60.000 0.00 0.00 0.00 3.36
472 473 1.244697 GGAGCAGTGACGAGTGGAGA 61.245 60.000 0.00 0.00 0.00 3.71
474 475 2.276116 GGGAGCAGTGACGAGTGGA 61.276 63.158 0.00 0.00 0.00 4.02
475 476 2.262915 GGGAGCAGTGACGAGTGG 59.737 66.667 0.00 0.00 0.00 4.00
476 477 2.126307 CGGGAGCAGTGACGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
501 502 4.835891 AGTCGCCTAGTCCCCGGG 62.836 72.222 15.80 15.80 0.00 5.73
502 503 2.335092 TAGAGTCGCCTAGTCCCCGG 62.335 65.000 0.00 0.00 0.00 5.73
503 504 0.885596 CTAGAGTCGCCTAGTCCCCG 60.886 65.000 0.00 0.00 33.26 5.73
504 505 0.183252 ACTAGAGTCGCCTAGTCCCC 59.817 60.000 0.00 0.00 44.27 4.81
505 506 3.804900 ACTAGAGTCGCCTAGTCCC 57.195 57.895 0.00 0.00 44.27 4.46
515 516 2.674357 GTGACGAGTGGAGACTAGAGTC 59.326 54.545 0.00 1.17 45.08 3.36
516 517 2.303600 AGTGACGAGTGGAGACTAGAGT 59.696 50.000 0.00 0.00 30.16 3.24
517 518 2.675844 CAGTGACGAGTGGAGACTAGAG 59.324 54.545 0.00 0.00 30.16 2.43
518 519 2.701107 CAGTGACGAGTGGAGACTAGA 58.299 52.381 0.00 0.00 30.16 2.43
519 520 1.131504 GCAGTGACGAGTGGAGACTAG 59.868 57.143 0.00 0.00 30.16 2.57
520 521 1.166129 GCAGTGACGAGTGGAGACTA 58.834 55.000 0.00 0.00 30.16 2.59
521 522 0.538516 AGCAGTGACGAGTGGAGACT 60.539 55.000 0.00 0.00 33.98 3.24
522 523 0.109504 GAGCAGTGACGAGTGGAGAC 60.110 60.000 0.00 0.00 0.00 3.36
523 524 1.244697 GGAGCAGTGACGAGTGGAGA 61.245 60.000 0.00 0.00 0.00 3.71
524 525 1.214062 GGAGCAGTGACGAGTGGAG 59.786 63.158 0.00 0.00 0.00 3.86
525 526 2.276116 GGGAGCAGTGACGAGTGGA 61.276 63.158 0.00 0.00 0.00 4.02
526 527 2.262915 GGGAGCAGTGACGAGTGG 59.737 66.667 0.00 0.00 0.00 4.00
527 528 2.126307 CGGGAGCAGTGACGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
555 556 2.043248 TGGAGTCGCCTAGTCCCC 60.043 66.667 5.37 0.00 46.03 4.81
658 659 0.600782 GTTGTTACCACGGAGGCGAA 60.601 55.000 0.00 0.00 43.14 4.70
682 684 2.291043 GGTCGGCCAGGAAAGAGGA 61.291 63.158 0.00 0.00 34.09 3.71
725 728 1.882308 TAAGACCGAAAGCCCCCATA 58.118 50.000 0.00 0.00 0.00 2.74
726 729 0.996583 TTAAGACCGAAAGCCCCCAT 59.003 50.000 0.00 0.00 0.00 4.00
737 780 1.136305 TCCGGAAGCTGATTAAGACCG 59.864 52.381 0.00 0.00 37.92 4.79
802 850 2.230660 GTATTGCCCTTGCCTATGACC 58.769 52.381 0.00 0.00 36.33 4.02
819 867 6.299141 CACCCTTAGGTCTATTGCATTGTAT 58.701 40.000 0.00 0.00 46.45 2.29
821 869 4.526970 CACCCTTAGGTCTATTGCATTGT 58.473 43.478 0.00 0.00 46.45 2.71
822 870 3.885297 CCACCCTTAGGTCTATTGCATTG 59.115 47.826 0.00 0.00 46.45 2.82
840 3994 5.461032 TTTTCATTGTACCATTCACCACC 57.539 39.130 0.00 0.00 0.00 4.61
881 4050 4.065088 GCACAATAGAGACAACAGGTTCA 58.935 43.478 0.00 0.00 0.00 3.18
943 4131 3.181465 ACAACAGGGGAGTATGCTTATCG 60.181 47.826 0.00 0.00 0.00 2.92
976 4201 0.036858 GAGGGCAGGAGTCACACTTC 60.037 60.000 0.00 0.00 0.00 3.01
986 4211 2.673200 GGCATCACTGAGGGCAGGA 61.673 63.158 12.02 0.00 46.60 3.86
1130 4355 0.179004 GAGCGGATCTGAGAGGAGGA 60.179 60.000 5.48 0.00 0.00 3.71
1314 4545 6.708949 GGTTACTTCCAGTGACACAAATAAGA 59.291 38.462 8.59 0.00 36.55 2.10
1329 4560 2.215196 GTCGCAAAGTGGTTACTTCCA 58.785 47.619 0.00 0.00 46.14 3.53
1440 4671 4.695455 ACCTGTCCAAAGTCAAATGATACG 59.305 41.667 0.00 0.00 0.00 3.06
1504 4735 6.040054 TCGGACTGACTATTGGAATTATCGAA 59.960 38.462 0.00 0.00 0.00 3.71
1522 4753 0.668706 CAGAGCAACAGGTCGGACTG 60.669 60.000 8.23 7.02 44.03 3.51
1528 4759 0.394565 ACCTCACAGAGCAACAGGTC 59.605 55.000 0.00 0.00 31.41 3.85
1529 4760 0.394565 GACCTCACAGAGCAACAGGT 59.605 55.000 0.00 0.00 40.33 4.00
1532 4763 1.693606 TGATGACCTCACAGAGCAACA 59.306 47.619 0.00 0.00 0.00 3.33
1615 4846 1.595794 AACACTTTTGTCACGCCTACG 59.404 47.619 0.00 0.00 39.47 3.51
1619 4850 1.917303 CAACAACACTTTTGTCACGCC 59.083 47.619 0.00 0.00 33.55 5.68
1652 4883 5.132897 TCGAAATTCCAACAAGAAATGGG 57.867 39.130 0.00 0.00 37.31 4.00
1654 4885 6.308766 GGACATCGAAATTCCAACAAGAAATG 59.691 38.462 5.64 0.00 0.00 2.32
1756 4999 1.542915 CACTGGCATTGGACCTTTGAG 59.457 52.381 0.00 0.00 0.00 3.02
1857 5100 4.508124 GGATCGTGTGCCATAACTAAGAAG 59.492 45.833 0.00 0.00 0.00 2.85
1888 5134 0.335019 AACCATAAGTCCCAAGGGCC 59.665 55.000 0.00 0.00 34.68 5.80
2083 5329 2.807676 ACCAACAGATGTGGAATTCCC 58.192 47.619 21.90 13.24 34.29 3.97
2181 5427 9.502091 GGACAACCATACATAGATAATAGCAAA 57.498 33.333 0.00 0.00 35.97 3.68
2186 5433 9.374711 TGACAGGACAACCATACATAGATAATA 57.625 33.333 0.00 0.00 38.94 0.98
2192 5439 5.344743 ACTGACAGGACAACCATACATAG 57.655 43.478 7.51 0.00 38.94 2.23
2241 5495 7.331026 CCACAGTCACCTAGAAAATTATCTCA 58.669 38.462 0.00 0.00 0.00 3.27
2261 5516 0.255890 CCCATAGGTGTTCCCCACAG 59.744 60.000 0.00 0.00 46.44 3.66
2333 5591 0.516877 GCTAGTGTTGCGCATCACAA 59.483 50.000 38.62 17.31 37.07 3.33
2342 5600 5.979517 GGAAAAATCCATATGCTAGTGTTGC 59.020 40.000 0.00 0.00 0.00 4.17
2392 5651 8.799367 CAGATCAATTTGAAGGGCATATAATCA 58.201 33.333 2.68 0.00 0.00 2.57
2397 5656 7.727186 ACATACAGATCAATTTGAAGGGCATAT 59.273 33.333 2.68 0.00 0.00 1.78
2428 5687 8.451245 ACCTAATGACCATCATTTGATTCCTAT 58.549 33.333 9.21 0.00 44.03 2.57
2503 5764 1.289276 GTTGCCCAAAACTGCAACAG 58.711 50.000 19.17 0.00 41.21 3.16
2504 5765 0.107945 GGTTGCCCAAAACTGCAACA 60.108 50.000 23.63 0.00 42.70 3.33
2505 5766 1.151172 CGGTTGCCCAAAACTGCAAC 61.151 55.000 16.64 16.64 40.94 4.17
2506 5767 1.142748 CGGTTGCCCAAAACTGCAA 59.857 52.632 0.00 0.00 30.07 4.08
2543 5870 5.624292 CGACCGTAATTTCCACCTAAAAAG 58.376 41.667 0.00 0.00 0.00 2.27
2548 5875 1.549620 TGCGACCGTAATTTCCACCTA 59.450 47.619 0.00 0.00 0.00 3.08
2551 5878 2.417239 TCAATGCGACCGTAATTTCCAC 59.583 45.455 0.00 0.00 0.00 4.02
2561 5889 6.086765 GCATTCTAAATTTATCAATGCGACCG 59.913 38.462 24.86 7.95 39.83 4.79
2592 5920 7.201767 CCCACTTCTCAAAAAGATCCATCATAC 60.202 40.741 0.00 0.00 32.82 2.39
2667 5998 3.131046 TGCTATGACACACATCGACAGAT 59.869 43.478 0.00 0.00 40.07 2.90
2725 6059 1.268896 GCGACCATGGCAAATCAGATG 60.269 52.381 13.04 0.00 0.00 2.90
2760 6094 3.684305 CACAAATCTGAACATCGGTGCTA 59.316 43.478 0.00 0.00 0.00 3.49
2878 6375 6.127647 GGTGCATCAGATCTGGATTTAACAAA 60.128 38.462 22.42 0.00 0.00 2.83
2880 6377 4.883585 GGTGCATCAGATCTGGATTTAACA 59.116 41.667 22.42 8.73 0.00 2.41
2881 6378 4.276926 GGGTGCATCAGATCTGGATTTAAC 59.723 45.833 22.42 12.73 0.00 2.01
2882 6379 4.464008 GGGTGCATCAGATCTGGATTTAA 58.536 43.478 22.42 2.26 0.00 1.52
2884 6381 2.423947 GGGGTGCATCAGATCTGGATTT 60.424 50.000 22.42 2.98 0.00 2.17
2885 6382 1.144503 GGGGTGCATCAGATCTGGATT 59.855 52.381 22.42 5.47 0.00 3.01
2886 6383 0.769873 GGGGTGCATCAGATCTGGAT 59.230 55.000 22.42 11.62 0.00 3.41
2963 7208 5.863965 TCACAGGTGTCAGAACATTTATCA 58.136 37.500 0.00 0.00 37.81 2.15
2971 7216 4.130118 ACAATCTTCACAGGTGTCAGAAC 58.870 43.478 0.00 0.00 0.00 3.01
3015 7260 1.883021 CCCGGGAAGTTCAACATGC 59.117 57.895 18.48 0.00 0.00 4.06
3050 7296 3.384168 ACACACCTAGAGCCAATATGGA 58.616 45.455 0.00 0.00 40.96 3.41
3089 7347 0.734942 CGCAGCCTTCCAAATGCAAG 60.735 55.000 0.00 0.00 38.60 4.01
3261 7527 8.185505 GCATATTTTCTTCCGTACCAAACATAA 58.814 33.333 0.00 0.00 0.00 1.90
3290 7562 4.639310 ACTGCATCAGGAAATCACAAGATC 59.361 41.667 0.00 0.00 35.51 2.75
3369 7641 3.726557 TCTTGCCACAGATTCCAGATT 57.273 42.857 0.00 0.00 0.00 2.40
3370 7642 3.726557 TTCTTGCCACAGATTCCAGAT 57.273 42.857 0.00 0.00 0.00 2.90
3378 7650 1.538047 GCCAGATTTCTTGCCACAGA 58.462 50.000 0.00 0.00 0.00 3.41
3438 7711 3.791973 CTAGATCAGCTTGTTCCGACT 57.208 47.619 0.00 0.00 0.00 4.18
3451 7724 4.221422 GTGCGGCCGGCTAGATCA 62.221 66.667 29.38 11.66 44.05 2.92
3520 7793 4.439057 TCATCACGGTATTTTCCACTAGC 58.561 43.478 0.00 0.00 0.00 3.42
3562 7838 7.784633 TTTTACCTTTTCCTGAATTGCAAAG 57.215 32.000 1.71 0.00 0.00 2.77
3624 7900 7.458677 AGTCAAAATTTTTATACGAGTACGCC 58.541 34.615 0.00 0.00 43.96 5.68
3625 7901 9.956797 TTAGTCAAAATTTTTATACGAGTACGC 57.043 29.630 0.00 0.00 43.96 4.42
3674 7951 8.809478 GTCCTTTAAACTTTATTTTGTTCGCAA 58.191 29.630 0.00 0.00 34.91 4.85
3675 7952 7.974501 TGTCCTTTAAACTTTATTTTGTTCGCA 59.025 29.630 0.00 0.00 0.00 5.10
3826 8136 8.703604 TGTAAAAATGGTTGAAAAATCACGAA 57.296 26.923 0.00 0.00 0.00 3.85
3883 8193 1.607148 GAGGGAAACGTTTGGAACCAG 59.393 52.381 20.10 0.00 0.00 4.00
3924 8234 6.816136 TGATTCCGATGAGTGTGTATTATGT 58.184 36.000 0.00 0.00 0.00 2.29
3952 8270 7.220683 GTGCGCATTTTGTCAGTTGATTTATAT 59.779 33.333 15.91 0.00 0.00 0.86
3960 8278 1.518102 GTGTGCGCATTTTGTCAGTTG 59.482 47.619 15.91 0.00 0.00 3.16
3974 8292 3.301554 TTGGCCAATGGGTGTGCG 61.302 61.111 16.05 0.00 36.17 5.34
3975 8293 2.037620 TTGTTGGCCAATGGGTGTGC 62.038 55.000 23.66 6.47 36.17 4.57
3976 8294 0.249826 GTTGTTGGCCAATGGGTGTG 60.250 55.000 23.66 0.00 35.02 3.82
3977 8295 1.406860 GGTTGTTGGCCAATGGGTGT 61.407 55.000 23.66 0.00 35.02 4.16
3978 8296 1.370810 GGTTGTTGGCCAATGGGTG 59.629 57.895 23.66 0.00 35.02 4.61
3979 8297 0.692419 TTGGTTGTTGGCCAATGGGT 60.692 50.000 23.66 0.00 40.69 4.51
3980 8298 2.140405 TTGGTTGTTGGCCAATGGG 58.860 52.632 23.66 0.00 40.69 4.00
3985 8303 3.957497 GGTGATATATTGGTTGTTGGCCA 59.043 43.478 0.00 0.00 0.00 5.36
3986 8304 3.957497 TGGTGATATATTGGTTGTTGGCC 59.043 43.478 0.00 0.00 0.00 5.36
3987 8305 5.301551 TCATGGTGATATATTGGTTGTTGGC 59.698 40.000 0.00 0.00 0.00 4.52
3988 8306 6.772233 TCTCATGGTGATATATTGGTTGTTGG 59.228 38.462 0.00 0.00 0.00 3.77
3989 8307 7.806409 TCTCATGGTGATATATTGGTTGTTG 57.194 36.000 0.00 0.00 0.00 3.33
3990 8308 8.821686 TTTCTCATGGTGATATATTGGTTGTT 57.178 30.769 0.00 0.00 0.00 2.83
3991 8309 9.071276 GATTTCTCATGGTGATATATTGGTTGT 57.929 33.333 0.00 0.00 0.00 3.32
3992 8310 9.070179 TGATTTCTCATGGTGATATATTGGTTG 57.930 33.333 0.00 0.00 0.00 3.77
3993 8311 9.818270 ATGATTTCTCATGGTGATATATTGGTT 57.182 29.630 0.00 0.00 40.66 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.