Multiple sequence alignment - TraesCS6D01G128000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G128000 chr6D 100.000 5182 0 0 1 5182 91850188 91845007 0.000000e+00 9570.0
1 TraesCS6D01G128000 chr6D 91.954 87 4 3 4565 4649 36811852 36811767 9.120000e-23 119.0
2 TraesCS6D01G128000 chr6D 96.875 64 1 1 2890 2952 91847238 91847175 7.100000e-19 106.0
3 TraesCS6D01G128000 chr6D 96.875 64 1 1 2951 3014 91847299 91847237 7.100000e-19 106.0
4 TraesCS6D01G128000 chr6D 95.833 48 2 0 4981 5028 262513937 262513890 1.550000e-10 78.7
5 TraesCS6D01G128000 chr6B 94.856 1983 66 10 993 2952 176283893 176281924 0.000000e+00 3064.0
6 TraesCS6D01G128000 chr6B 93.772 1397 69 13 2958 4342 176281980 176280590 0.000000e+00 2082.0
7 TraesCS6D01G128000 chr6B 91.293 781 62 4 1 780 437481616 437482391 0.000000e+00 1061.0
8 TraesCS6D01G128000 chr6B 92.640 394 15 6 4791 5182 176280242 176279861 5.860000e-154 555.0
9 TraesCS6D01G128000 chr6B 93.522 247 15 1 4339 4584 176280510 176280264 2.950000e-97 366.0
10 TraesCS6D01G128000 chr6B 90.909 55 5 0 778 832 681843331 681843277 2.000000e-09 75.0
11 TraesCS6D01G128000 chr6A 94.459 1967 63 18 1007 2952 111566727 111564786 0.000000e+00 2987.0
12 TraesCS6D01G128000 chr6A 92.610 1272 55 19 2958 4222 111564842 111563603 0.000000e+00 1792.0
13 TraesCS6D01G128000 chr6A 94.981 259 10 2 4207 4463 111559966 111559709 2.250000e-108 403.0
14 TraesCS6D01G128000 chr6A 95.364 151 7 0 4791 4941 111559640 111559490 1.860000e-59 241.0
15 TraesCS6D01G128000 chr6A 96.875 96 3 0 5087 5182 111559277 111559182 1.490000e-35 161.0
16 TraesCS6D01G128000 chr6A 92.857 70 5 0 897 966 111567297 111567228 9.180000e-18 102.0
17 TraesCS6D01G128000 chr6A 100.000 42 0 0 968 1009 111567177 111567136 1.550000e-10 78.7
18 TraesCS6D01G128000 chr3B 89.898 782 72 5 1 778 23785141 23784363 0.000000e+00 1000.0
19 TraesCS6D01G128000 chr3B 90.299 134 13 0 4650 4783 749997683 749997816 5.330000e-40 176.0
20 TraesCS6D01G128000 chr3B 96.154 52 2 0 4978 5029 324235473 324235524 9.250000e-13 86.1
21 TraesCS6D01G128000 chr7B 90.155 772 68 5 8 777 690565770 690566535 0.000000e+00 998.0
22 TraesCS6D01G128000 chr7B 90.155 772 68 5 8 777 690596465 690597230 0.000000e+00 998.0
23 TraesCS6D01G128000 chr7B 90.052 774 68 6 8 780 417051163 417050398 0.000000e+00 994.0
24 TraesCS6D01G128000 chr7B 88.806 134 15 0 4650 4783 484625479 484625612 1.150000e-36 165.0
25 TraesCS6D01G128000 chr7B 84.956 113 11 4 4571 4678 538224651 538224762 5.490000e-20 110.0
26 TraesCS6D01G128000 chr4B 89.757 781 74 4 1 778 660663654 660662877 0.000000e+00 994.0
27 TraesCS6D01G128000 chr4B 86.010 193 22 5 4594 4783 211981970 211982160 8.800000e-48 202.0
28 TraesCS6D01G128000 chr4B 94.444 54 2 1 4978 5031 324971953 324971901 1.200000e-11 82.4
29 TraesCS6D01G128000 chr4B 97.872 47 1 0 4981 5027 568667477 568667431 1.200000e-11 82.4
30 TraesCS6D01G128000 chr4B 97.826 46 1 0 4981 5026 26837386 26837341 4.300000e-11 80.5
31 TraesCS6D01G128000 chr5B 89.629 781 74 5 1 778 606884773 606885549 0.000000e+00 987.0
32 TraesCS6D01G128000 chr5B 89.419 775 72 8 8 780 490122531 490123297 0.000000e+00 968.0
33 TraesCS6D01G128000 chr5B 91.667 120 10 0 4664 4783 557898162 557898043 3.210000e-37 167.0
34 TraesCS6D01G128000 chr5B 88.660 97 8 3 4571 4665 435948047 435948142 1.180000e-21 115.0
35 TraesCS6D01G128000 chr5B 89.247 93 9 1 4574 4665 679114101 679114009 1.180000e-21 115.0
36 TraesCS6D01G128000 chr1B 89.535 774 70 7 13 778 548533735 548534505 0.000000e+00 970.0
37 TraesCS6D01G128000 chr1B 82.911 316 53 1 2984 3298 588424955 588425270 3.050000e-72 283.0
38 TraesCS6D01G128000 chr1B 97.959 49 1 0 4978 5026 57536897 57536945 9.250000e-13 86.1
39 TraesCS6D01G128000 chr1D 79.895 955 107 42 2039 2952 435045731 435046641 5.700000e-174 621.0
40 TraesCS6D01G128000 chr1D 76.600 1094 178 50 972 2041 435044650 435045689 9.880000e-147 531.0
41 TraesCS6D01G128000 chr1D 83.036 336 56 1 2964 3298 435046591 435046926 2.340000e-78 303.0
42 TraesCS6D01G128000 chr1D 90.977 133 12 0 4650 4782 483877474 483877606 4.120000e-41 180.0
43 TraesCS6D01G128000 chr1D 96.000 50 2 0 4981 5030 40901360 40901311 1.200000e-11 82.4
44 TraesCS6D01G128000 chr1D 92.727 55 4 0 4978 5032 104250931 104250985 4.300000e-11 80.5
45 TraesCS6D01G128000 chr1D 95.833 48 2 0 4981 5028 90207988 90207941 1.550000e-10 78.7
46 TraesCS6D01G128000 chr1D 95.918 49 1 1 4981 5028 450108162 450108114 1.550000e-10 78.7
47 TraesCS6D01G128000 chr1D 88.889 63 3 4 4983 5042 444854215 444854154 2.000000e-09 75.0
48 TraesCS6D01G128000 chr1A 78.150 1103 152 47 965 2041 532595944 532596983 2.050000e-173 619.0
49 TraesCS6D01G128000 chr1A 81.142 753 92 30 2219 2952 532668964 532669685 4.530000e-155 558.0
50 TraesCS6D01G128000 chr1A 80.873 481 47 19 1085 1556 432593140 432592696 2.310000e-88 337.0
51 TraesCS6D01G128000 chr1A 83.333 342 50 3 2964 3298 532597891 532598232 5.040000e-80 309.0
52 TraesCS6D01G128000 chr1A 82.143 280 32 7 3805 4084 532598261 532598522 1.880000e-54 224.0
53 TraesCS6D01G128000 chr1A 94.118 51 3 0 4982 5032 6537640 6537690 1.550000e-10 78.7
54 TraesCS6D01G128000 chr3A 84.746 413 50 12 3396 3806 708985696 708986097 8.080000e-108 401.0
55 TraesCS6D01G128000 chr3A 81.579 418 59 16 3398 3806 681099041 681099449 3.870000e-86 329.0
56 TraesCS6D01G128000 chr3A 91.736 121 7 2 4652 4770 746316792 746316911 1.150000e-36 165.0
57 TraesCS6D01G128000 chr3A 93.976 83 3 2 4570 4651 645338856 645338937 1.960000e-24 124.0
58 TraesCS6D01G128000 chr5D 76.106 904 128 52 1085 1973 366750628 366751458 4.860000e-105 392.0
59 TraesCS6D01G128000 chr5D 76.323 756 117 36 1238 1973 365177359 365178072 1.070000e-91 348.0
60 TraesCS6D01G128000 chr5D 89.437 142 10 3 4650 4789 524326515 524326377 1.920000e-39 174.0
61 TraesCS6D01G128000 chr5D 94.340 53 2 1 4981 5033 21642083 21642032 4.300000e-11 80.5
62 TraesCS6D01G128000 chr3D 83.413 416 52 15 3398 3804 454744552 454744145 2.280000e-98 370.0
63 TraesCS6D01G128000 chr3D 82.734 417 50 17 3396 3804 547780031 547779629 8.260000e-93 351.0
64 TraesCS6D01G128000 chr3D 87.586 145 17 1 4640 4783 540549155 540549011 3.210000e-37 167.0
65 TraesCS6D01G128000 chr3D 96.000 50 2 0 4981 5030 562693575 562693624 1.200000e-11 82.4
66 TraesCS6D01G128000 chr3D 92.727 55 4 0 4978 5032 76672283 76672337 4.300000e-11 80.5
67 TraesCS6D01G128000 chr3D 92.727 55 4 0 4978 5032 291320279 291320333 4.300000e-11 80.5
68 TraesCS6D01G128000 chr3D 94.231 52 2 1 4981 5032 301971941 301971891 1.550000e-10 78.7
69 TraesCS6D01G128000 chrUn 83.010 412 50 12 3406 3804 61736290 61736694 6.380000e-94 355.0
70 TraesCS6D01G128000 chrUn 82.310 407 53 12 3406 3802 294376422 294376819 8.310000e-88 335.0
71 TraesCS6D01G128000 chrUn 95.745 47 2 0 4979 5025 97890341 97890295 5.560000e-10 76.8
72 TraesCS6D01G128000 chrUn 95.745 47 1 1 4977 5023 37862214 37862169 2.000000e-09 75.0
73 TraesCS6D01G128000 chrUn 95.652 46 2 0 4978 5023 197752434 197752479 2.000000e-09 75.0
74 TraesCS6D01G128000 chrUn 97.619 42 1 0 4983 5024 19086491 19086532 7.200000e-09 73.1
75 TraesCS6D01G128000 chrUn 97.619 42 1 0 4983 5024 31861254 31861295 7.200000e-09 73.1
76 TraesCS6D01G128000 chrUn 95.455 44 2 0 4983 5026 71332970 71332927 2.590000e-08 71.3
77 TraesCS6D01G128000 chrUn 93.617 47 2 1 4978 5024 153386198 153386243 9.310000e-08 69.4
78 TraesCS6D01G128000 chrUn 93.333 45 3 0 4981 5025 31861252 31861208 3.350000e-07 67.6
79 TraesCS6D01G128000 chrUn 97.436 39 1 0 4986 5024 342888106 342888144 3.350000e-07 67.6
80 TraesCS6D01G128000 chrUn 93.023 43 3 0 4981 5023 29731073 29731115 4.330000e-06 63.9
81 TraesCS6D01G128000 chr7A 81.818 418 57 16 3398 3804 543430444 543430035 2.990000e-87 333.0
82 TraesCS6D01G128000 chr7A 86.275 153 16 4 4635 4783 513541156 513541307 1.490000e-35 161.0
83 TraesCS6D01G128000 chr7A 94.340 53 2 1 4981 5033 677664000 677663949 4.300000e-11 80.5
84 TraesCS6D01G128000 chr5A 96.203 79 1 2 4572 4649 350268568 350268491 1.510000e-25 128.0
85 TraesCS6D01G128000 chr5A 98.039 51 1 0 4981 5031 31271741 31271691 7.150000e-14 89.8
86 TraesCS6D01G128000 chr4A 86.066 122 8 8 4568 4687 380148529 380148415 7.050000e-24 122.0
87 TraesCS6D01G128000 chr4A 84.167 120 10 6 4576 4687 603043324 603043206 1.970000e-19 108.0
88 TraesCS6D01G128000 chr4A 97.959 49 1 0 4978 5026 617962626 617962674 9.250000e-13 86.1
89 TraesCS6D01G128000 chr4D 100.000 48 0 0 4978 5025 464801016 464800969 7.150000e-14 89.8
90 TraesCS6D01G128000 chr4D 100.000 43 0 0 4982 5024 332439130 332439172 4.300000e-11 80.5
91 TraesCS6D01G128000 chr4D 97.826 46 1 0 4978 5023 484187161 484187116 4.300000e-11 80.5
92 TraesCS6D01G128000 chr4D 97.778 45 1 0 4979 5023 69119821 69119777 1.550000e-10 78.7
93 TraesCS6D01G128000 chr4D 92.593 54 4 0 4979 5032 307018198 307018251 1.550000e-10 78.7
94 TraesCS6D01G128000 chr4D 95.833 48 2 0 4983 5030 403409571 403409524 1.550000e-10 78.7
95 TraesCS6D01G128000 chr4D 100.000 42 0 0 4982 5023 469605676 469605717 1.550000e-10 78.7
96 TraesCS6D01G128000 chr4D 94.118 51 3 0 4981 5031 478993355 478993405 1.550000e-10 78.7
97 TraesCS6D01G128000 chr4D 97.727 44 1 0 4981 5024 66516237 66516194 5.560000e-10 76.8
98 TraesCS6D01G128000 chr4D 90.909 55 5 0 4978 5032 81595954 81596008 2.000000e-09 75.0
99 TraesCS6D01G128000 chr4D 90.909 55 5 0 4978 5032 103894665 103894719 2.000000e-09 75.0
100 TraesCS6D01G128000 chr4D 92.308 52 4 0 4981 5032 119051181 119051130 2.000000e-09 75.0
101 TraesCS6D01G128000 chr4D 92.308 52 4 0 4981 5032 142297189 142297240 2.000000e-09 75.0
102 TraesCS6D01G128000 chr4D 92.308 52 4 0 4981 5032 190653995 190653944 2.000000e-09 75.0
103 TraesCS6D01G128000 chr4D 90.909 55 5 0 4978 5032 420783335 420783389 2.000000e-09 75.0
104 TraesCS6D01G128000 chr4D 91.071 56 3 2 4978 5032 478671891 478671945 2.000000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G128000 chr6D 91845007 91850188 5181 True 3260.666667 9570 97.916667 1 5182 3 chr6D.!!$R3 5181
1 TraesCS6D01G128000 chr6B 176279861 176283893 4032 True 1516.750000 3064 93.697500 993 5182 4 chr6B.!!$R2 4189
2 TraesCS6D01G128000 chr6B 437481616 437482391 775 False 1061.000000 1061 91.293000 1 780 1 chr6B.!!$F1 779
3 TraesCS6D01G128000 chr6A 111559182 111567297 8115 True 823.528571 2987 95.306571 897 5182 7 chr6A.!!$R1 4285
4 TraesCS6D01G128000 chr3B 23784363 23785141 778 True 1000.000000 1000 89.898000 1 778 1 chr3B.!!$R1 777
5 TraesCS6D01G128000 chr7B 690565770 690566535 765 False 998.000000 998 90.155000 8 777 1 chr7B.!!$F3 769
6 TraesCS6D01G128000 chr7B 690596465 690597230 765 False 998.000000 998 90.155000 8 777 1 chr7B.!!$F4 769
7 TraesCS6D01G128000 chr7B 417050398 417051163 765 True 994.000000 994 90.052000 8 780 1 chr7B.!!$R1 772
8 TraesCS6D01G128000 chr4B 660662877 660663654 777 True 994.000000 994 89.757000 1 778 1 chr4B.!!$R4 777
9 TraesCS6D01G128000 chr5B 606884773 606885549 776 False 987.000000 987 89.629000 1 778 1 chr5B.!!$F3 777
10 TraesCS6D01G128000 chr5B 490122531 490123297 766 False 968.000000 968 89.419000 8 780 1 chr5B.!!$F2 772
11 TraesCS6D01G128000 chr1B 548533735 548534505 770 False 970.000000 970 89.535000 13 778 1 chr1B.!!$F2 765
12 TraesCS6D01G128000 chr1D 435044650 435046926 2276 False 485.000000 621 79.843667 972 3298 3 chr1D.!!$F3 2326
13 TraesCS6D01G128000 chr1A 532668964 532669685 721 False 558.000000 558 81.142000 2219 2952 1 chr1A.!!$F2 733
14 TraesCS6D01G128000 chr1A 532595944 532598522 2578 False 384.000000 619 81.208667 965 4084 3 chr1A.!!$F3 3119
15 TraesCS6D01G128000 chr5D 366750628 366751458 830 False 392.000000 392 76.106000 1085 1973 1 chr5D.!!$F2 888
16 TraesCS6D01G128000 chr5D 365177359 365178072 713 False 348.000000 348 76.323000 1238 1973 1 chr5D.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 55 0.101219 CATGACGATCACTCCGAGCA 59.899 55.0 0.00 0.0 0.0 4.26 F
916 928 0.249911 ACGACAGTCAGTTTCCAGCC 60.250 55.0 0.41 0.0 0.0 4.85 F
1375 1863 0.611714 GTTCTTGCCGGACCTCCTAA 59.388 55.0 5.05 0.0 0.0 2.69 F
1521 2013 0.768622 TTTGTCCGTCCCACCATTCT 59.231 50.0 0.00 0.0 0.0 2.40 F
1693 2194 0.831307 GGAGCCAGGTCCGTAAATCT 59.169 55.0 0.00 0.0 0.0 2.40 F
1910 2415 0.937304 TTGACAAGCAGCGAAGTGAC 59.063 50.0 0.00 0.0 0.0 3.67 F
3663 4286 0.318614 ATGCTGGGTTTTTGTTCGCG 60.319 50.0 0.00 0.0 0.0 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2389 0.317269 CGCTGCTTGTCAAACACCTG 60.317 55.000 0.0 0.0 0.00 4.00 R
2662 3256 1.737838 TAGCACAAGCCACAGTATGC 58.262 50.000 0.0 0.0 40.77 3.14 R
3119 3734 1.072266 ACCCCAACTATGCTGAACCA 58.928 50.000 0.0 0.0 0.00 3.67 R
3398 4014 3.593096 CCGTAGACCAAAAGTTACCCTC 58.407 50.000 0.0 0.0 0.00 4.30 R
3645 4268 1.064946 CGCGAACAAAAACCCAGCA 59.935 52.632 0.0 0.0 0.00 4.41 R
3834 4457 4.546570 GACATTAGGTCAAGCAAAACCAC 58.453 43.478 4.5 0.0 46.19 4.16 R
4785 9172 0.036875 AACAGCACAGCCTAACCTCC 59.963 55.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.432186 GCTGAGCGTTGTTGGGTT 58.568 55.556 0.00 0.00 0.00 4.11
20 21 0.738389 CTGAGCGTTGTTGGGTTTGT 59.262 50.000 0.00 0.00 0.00 2.83
21 22 0.736053 TGAGCGTTGTTGGGTTTGTC 59.264 50.000 0.00 0.00 0.00 3.18
52 55 0.101219 CATGACGATCACTCCGAGCA 59.899 55.000 0.00 0.00 0.00 4.26
65 68 2.419198 GAGCATCCTCGATGGCGT 59.581 61.111 3.94 0.00 40.10 5.68
110 113 0.943835 CCGCATGTCACTGTCGTTGA 60.944 55.000 0.00 0.00 0.00 3.18
139 143 3.056821 AGTTCCAAATGATCTCGACGTCA 60.057 43.478 17.16 1.87 0.00 4.35
174 178 2.889578 GCACATTGCAGTGGTTGTG 58.110 52.632 14.25 11.63 44.26 3.33
175 179 0.385029 GCACATTGCAGTGGTTGTGA 59.615 50.000 14.25 0.00 44.26 3.58
176 180 1.202394 GCACATTGCAGTGGTTGTGAA 60.202 47.619 14.25 0.00 44.26 3.18
184 188 2.351157 GCAGTGGTTGTGAAGAAGCATC 60.351 50.000 0.00 0.00 35.86 3.91
235 240 2.359107 CACGGATGTGCTGGCAGT 60.359 61.111 17.16 0.00 39.67 4.40
289 294 2.350007 CGCGATAACTAGACAGAGAGGC 60.350 54.545 0.00 0.00 0.00 4.70
551 559 6.348458 GCTATGTTACACAAATTCAGTCAGCA 60.348 38.462 0.00 0.00 0.00 4.41
768 780 5.883503 AAAACTCAGACGTTGTGGTAAAA 57.116 34.783 0.00 0.00 0.00 1.52
780 792 9.109533 GACGTTGTGGTAAAATGTTATAAGTTG 57.890 33.333 0.00 0.00 0.00 3.16
781 793 8.623030 ACGTTGTGGTAAAATGTTATAAGTTGT 58.377 29.630 0.00 0.00 0.00 3.32
782 794 8.897809 CGTTGTGGTAAAATGTTATAAGTTGTG 58.102 33.333 0.00 0.00 0.00 3.33
783 795 9.187455 GTTGTGGTAAAATGTTATAAGTTGTGG 57.813 33.333 0.00 0.00 0.00 4.17
784 796 8.466617 TGTGGTAAAATGTTATAAGTTGTGGT 57.533 30.769 0.00 0.00 0.00 4.16
785 797 9.570468 TGTGGTAAAATGTTATAAGTTGTGGTA 57.430 29.630 0.00 0.00 0.00 3.25
815 827 9.787435 TGTTATAAGTTATTCTGAAGTTGTGGT 57.213 29.630 0.00 0.00 0.00 4.16
821 833 9.965824 AAGTTATTCTGAAGTTGTGGTTTTATG 57.034 29.630 0.00 0.00 0.00 1.90
822 834 9.131791 AGTTATTCTGAAGTTGTGGTTTTATGT 57.868 29.630 0.00 0.00 0.00 2.29
865 877 9.830975 TTCTATCATCTGAAAATATTTGTCGGA 57.169 29.630 17.02 17.02 0.00 4.55
866 878 9.830975 TCTATCATCTGAAAATATTTGTCGGAA 57.169 29.630 17.91 9.21 30.70 4.30
892 904 9.895138 AAAAATGGATAAAAATGATGAAGGGAG 57.105 29.630 0.00 0.00 0.00 4.30
893 905 8.613922 AAATGGATAAAAATGATGAAGGGAGT 57.386 30.769 0.00 0.00 0.00 3.85
894 906 8.613922 AATGGATAAAAATGATGAAGGGAGTT 57.386 30.769 0.00 0.00 0.00 3.01
895 907 7.408756 TGGATAAAAATGATGAAGGGAGTTG 57.591 36.000 0.00 0.00 0.00 3.16
899 911 2.698855 ATGATGAAGGGAGTTGGACG 57.301 50.000 0.00 0.00 0.00 4.79
902 914 1.275291 GATGAAGGGAGTTGGACGACA 59.725 52.381 0.00 0.00 0.00 4.35
916 928 0.249911 ACGACAGTCAGTTTCCAGCC 60.250 55.000 0.41 0.00 0.00 4.85
924 936 0.890996 CAGTTTCCAGCCCAGTCCAC 60.891 60.000 0.00 0.00 0.00 4.02
955 967 1.208706 CTCTTTCCCCTTCTCCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
1375 1863 0.611714 GTTCTTGCCGGACCTCCTAA 59.388 55.000 5.05 0.00 0.00 2.69
1521 2013 0.768622 TTTGTCCGTCCCACCATTCT 59.231 50.000 0.00 0.00 0.00 2.40
1523 2015 0.899720 TGTCCGTCCCACCATTCTAC 59.100 55.000 0.00 0.00 0.00 2.59
1693 2194 0.831307 GGAGCCAGGTCCGTAAATCT 59.169 55.000 0.00 0.00 0.00 2.40
1744 2245 6.820656 GTGTGGATGAGATTGGGATGTATATC 59.179 42.308 0.00 0.00 0.00 1.63
1884 2389 1.562475 TGGGGCCTGTAAATACCTGAC 59.438 52.381 0.84 0.00 0.00 3.51
1910 2415 0.937304 TTGACAAGCAGCGAAGTGAC 59.063 50.000 0.00 0.00 0.00 3.67
1977 2487 5.084818 TGTGATCCACAAGGTGTGTATAG 57.915 43.478 7.55 0.00 46.45 1.31
1978 2488 4.530553 TGTGATCCACAAGGTGTGTATAGT 59.469 41.667 7.55 0.00 46.45 2.12
1979 2489 5.717654 TGTGATCCACAAGGTGTGTATAGTA 59.282 40.000 7.55 0.00 46.45 1.82
1980 2490 6.382859 TGTGATCCACAAGGTGTGTATAGTAT 59.617 38.462 7.55 0.00 46.45 2.12
1981 2491 7.562088 TGTGATCCACAAGGTGTGTATAGTATA 59.438 37.037 7.55 0.00 46.45 1.47
2028 2545 2.983136 CAGAACTCAGCGTGACAGTTAG 59.017 50.000 0.00 0.00 0.00 2.34
2071 2636 8.796475 AGTATGAAATATTGGGATTGTGCATAC 58.204 33.333 0.00 0.00 34.03 2.39
2166 2731 4.385358 TGAGACGATGTATGCTGCTAAA 57.615 40.909 0.00 0.00 0.00 1.85
2518 3106 3.944055 AGGCTATAGTCGATGCGATTT 57.056 42.857 0.84 0.00 38.42 2.17
2662 3256 5.221224 TGGTTAGGTTATAATACGTGACCCG 60.221 44.000 0.00 0.00 40.08 5.28
2761 3367 7.451877 TCTCATTAGTCTCCACTGTTACTTCTT 59.548 37.037 0.00 0.00 33.62 2.52
2932 3540 6.095580 TGTTACGATCTTATCTTCTGCAGACT 59.904 38.462 18.03 6.89 32.83 3.24
2933 3541 5.181690 ACGATCTTATCTTCTGCAGACTC 57.818 43.478 18.03 2.74 32.83 3.36
2934 3542 4.642437 ACGATCTTATCTTCTGCAGACTCA 59.358 41.667 18.03 3.10 32.83 3.41
2935 3543 5.301551 ACGATCTTATCTTCTGCAGACTCAT 59.698 40.000 18.03 10.95 32.83 2.90
2936 3544 5.858049 CGATCTTATCTTCTGCAGACTCATC 59.142 44.000 18.03 9.85 32.83 2.92
2937 3545 6.294120 CGATCTTATCTTCTGCAGACTCATCT 60.294 42.308 18.03 0.82 32.83 2.90
2950 3558 5.866159 AGACTCATCTGATATCACTTGCA 57.134 39.130 0.00 0.00 32.29 4.08
2951 3559 5.845103 AGACTCATCTGATATCACTTGCAG 58.155 41.667 0.00 5.14 32.29 4.41
2952 3560 5.597594 AGACTCATCTGATATCACTTGCAGA 59.402 40.000 0.00 0.00 41.14 4.26
2953 3561 6.268158 AGACTCATCTGATATCACTTGCAGAT 59.732 38.462 0.00 0.00 46.00 2.90
2954 3562 6.457355 ACTCATCTGATATCACTTGCAGATC 58.543 40.000 0.00 0.00 43.97 2.75
2955 3563 6.041751 ACTCATCTGATATCACTTGCAGATCA 59.958 38.462 0.00 0.00 43.97 2.92
2956 3564 6.823497 TCATCTGATATCACTTGCAGATCAA 58.177 36.000 0.00 0.00 43.97 2.57
2957 3565 6.704937 TCATCTGATATCACTTGCAGATCAAC 59.295 38.462 0.00 0.00 43.97 3.18
2958 3566 6.231258 TCTGATATCACTTGCAGATCAACT 57.769 37.500 0.00 0.00 32.85 3.16
2959 3567 6.647229 TCTGATATCACTTGCAGATCAACTT 58.353 36.000 0.00 0.00 32.85 2.66
2960 3568 6.537660 TCTGATATCACTTGCAGATCAACTTG 59.462 38.462 0.00 0.00 32.85 3.16
2961 3569 6.408869 TGATATCACTTGCAGATCAACTTGA 58.591 36.000 0.00 0.00 0.00 3.02
2962 3570 6.537660 TGATATCACTTGCAGATCAACTTGAG 59.462 38.462 0.00 0.00 29.75 3.02
2963 3571 2.810274 TCACTTGCAGATCAACTTGAGC 59.190 45.455 0.00 0.00 31.96 4.26
2964 3572 2.095364 CACTTGCAGATCAACTTGAGCC 60.095 50.000 3.36 0.00 32.25 4.70
2965 3573 2.224719 ACTTGCAGATCAACTTGAGCCT 60.225 45.455 3.36 0.00 32.25 4.58
2966 3574 2.574006 TGCAGATCAACTTGAGCCTT 57.426 45.000 3.36 0.00 32.25 4.35
2967 3575 2.867624 TGCAGATCAACTTGAGCCTTT 58.132 42.857 3.36 0.00 32.25 3.11
2968 3576 2.816087 TGCAGATCAACTTGAGCCTTTC 59.184 45.455 3.36 0.00 32.25 2.62
2969 3577 3.080319 GCAGATCAACTTGAGCCTTTCT 58.920 45.455 3.36 0.00 32.25 2.52
2970 3578 3.119919 GCAGATCAACTTGAGCCTTTCTG 60.120 47.826 12.27 12.27 32.25 3.02
2971 3579 4.070716 CAGATCAACTTGAGCCTTTCTGT 58.929 43.478 3.36 0.00 32.25 3.41
2972 3580 4.518211 CAGATCAACTTGAGCCTTTCTGTT 59.482 41.667 3.36 0.00 32.25 3.16
2973 3581 5.702670 CAGATCAACTTGAGCCTTTCTGTTA 59.297 40.000 3.36 0.00 32.25 2.41
2974 3582 5.703130 AGATCAACTTGAGCCTTTCTGTTAC 59.297 40.000 3.36 0.00 32.25 2.50
2975 3583 3.807622 TCAACTTGAGCCTTTCTGTTACG 59.192 43.478 0.00 0.00 0.00 3.18
2976 3584 3.746045 ACTTGAGCCTTTCTGTTACGA 57.254 42.857 0.00 0.00 0.00 3.43
2977 3585 4.273148 ACTTGAGCCTTTCTGTTACGAT 57.727 40.909 0.00 0.00 0.00 3.73
2978 3586 4.246458 ACTTGAGCCTTTCTGTTACGATC 58.754 43.478 0.00 0.00 0.00 3.69
2979 3587 4.021016 ACTTGAGCCTTTCTGTTACGATCT 60.021 41.667 0.00 0.00 0.00 2.75
2980 3588 4.537135 TGAGCCTTTCTGTTACGATCTT 57.463 40.909 0.00 0.00 0.00 2.40
2981 3589 5.654603 TGAGCCTTTCTGTTACGATCTTA 57.345 39.130 0.00 0.00 0.00 2.10
2982 3590 6.222038 TGAGCCTTTCTGTTACGATCTTAT 57.778 37.500 0.00 0.00 0.00 1.73
2983 3591 6.273825 TGAGCCTTTCTGTTACGATCTTATC 58.726 40.000 0.00 0.00 0.00 1.75
2984 3592 6.096987 TGAGCCTTTCTGTTACGATCTTATCT 59.903 38.462 0.00 0.00 0.00 1.98
2985 3593 6.879400 AGCCTTTCTGTTACGATCTTATCTT 58.121 36.000 0.00 0.00 0.00 2.40
2986 3594 6.981559 AGCCTTTCTGTTACGATCTTATCTTC 59.018 38.462 0.00 0.00 0.00 2.87
2987 3595 6.981559 GCCTTTCTGTTACGATCTTATCTTCT 59.018 38.462 0.00 0.00 0.00 2.85
2988 3596 7.043059 GCCTTTCTGTTACGATCTTATCTTCTG 60.043 40.741 0.00 0.00 0.00 3.02
2989 3597 7.043059 CCTTTCTGTTACGATCTTATCTTCTGC 60.043 40.741 0.00 0.00 0.00 4.26
2990 3598 6.451064 TCTGTTACGATCTTATCTTCTGCA 57.549 37.500 0.00 0.00 0.00 4.41
2991 3599 6.499172 TCTGTTACGATCTTATCTTCTGCAG 58.501 40.000 7.63 7.63 0.00 4.41
2992 3600 6.318900 TCTGTTACGATCTTATCTTCTGCAGA 59.681 38.462 13.74 13.74 35.33 4.26
2993 3601 6.266323 TGTTACGATCTTATCTTCTGCAGAC 58.734 40.000 18.03 0.00 32.83 3.51
3101 3716 2.525368 GACTTAAATGGCCACTTGGGT 58.475 47.619 8.16 6.99 39.65 4.51
3102 3717 2.897326 GACTTAAATGGCCACTTGGGTT 59.103 45.455 8.16 0.00 39.65 4.11
3119 3734 2.550208 GGGTTTGAGTCGATTGGTGAGT 60.550 50.000 0.00 0.00 0.00 3.41
3398 4014 5.548706 CAAATTATTTGGTTGCATGTGGG 57.451 39.130 9.63 0.00 37.01 4.61
3403 4019 2.017668 TTGGTTGCATGTGGGAGGGT 62.018 55.000 0.00 0.00 0.00 4.34
3417 4033 3.328637 TGGGAGGGTAACTTTTGGTCTAC 59.671 47.826 0.00 0.00 0.00 2.59
3663 4286 0.318614 ATGCTGGGTTTTTGTTCGCG 60.319 50.000 0.00 0.00 0.00 5.87
3834 4457 7.609760 TGTGTGACTTACCTGCATTTTATAG 57.390 36.000 0.00 0.00 0.00 1.31
3838 4461 6.598064 GTGACTTACCTGCATTTTATAGTGGT 59.402 38.462 0.00 0.00 0.00 4.16
3871 4494 5.074115 CCTAATGTCCAAACAACAACCCTA 58.926 41.667 0.00 0.00 39.30 3.53
3878 4501 4.098654 TCCAAACAACAACCCTATTGTGTG 59.901 41.667 1.09 1.09 41.73 3.82
3888 4511 9.474313 AACAACCCTATTGTGTGTATTTCATAT 57.526 29.630 0.00 0.00 32.22 1.78
4007 4630 5.503927 TCTCCTACCAACATACGAGTACTT 58.496 41.667 0.00 0.00 0.00 2.24
4301 8579 0.037590 TACTGCAATGGGTGTGGGTC 59.962 55.000 0.00 0.00 0.00 4.46
4307 8585 3.574074 ATGGGTGTGGGTCTGCAGC 62.574 63.158 9.47 4.04 0.00 5.25
4474 8838 4.566488 CCCTTGGCAACCTAGATGGATATC 60.566 50.000 0.00 0.00 39.71 1.63
4475 8839 4.288105 CCTTGGCAACCTAGATGGATATCT 59.712 45.833 2.05 0.00 45.45 1.98
4508 8872 7.041780 ACGAATGAACTAGATGGATATGTTTGC 60.042 37.037 0.00 0.00 0.00 3.68
4530 8894 2.381911 CCATTGCCTTAGATTGCTGGT 58.618 47.619 0.00 0.00 0.00 4.00
4577 8964 3.942748 TCCCCTTGCGAAACAACATATAC 59.057 43.478 0.00 0.00 33.68 1.47
4578 8965 3.945285 CCCCTTGCGAAACAACATATACT 59.055 43.478 0.00 0.00 33.68 2.12
4579 8966 4.035208 CCCCTTGCGAAACAACATATACTC 59.965 45.833 0.00 0.00 33.68 2.59
4580 8967 4.035208 CCCTTGCGAAACAACATATACTCC 59.965 45.833 0.00 0.00 33.68 3.85
4581 8968 4.876107 CCTTGCGAAACAACATATACTCCT 59.124 41.667 0.00 0.00 33.68 3.69
4582 8969 5.006746 CCTTGCGAAACAACATATACTCCTC 59.993 44.000 0.00 0.00 33.68 3.71
4583 8970 5.339008 TGCGAAACAACATATACTCCTCT 57.661 39.130 0.00 0.00 0.00 3.69
4584 8971 5.109210 TGCGAAACAACATATACTCCTCTG 58.891 41.667 0.00 0.00 0.00 3.35
4585 8972 5.109903 GCGAAACAACATATACTCCTCTGT 58.890 41.667 0.00 0.00 0.00 3.41
4586 8973 5.581085 GCGAAACAACATATACTCCTCTGTT 59.419 40.000 0.00 0.00 32.27 3.16
4587 8974 6.237861 GCGAAACAACATATACTCCTCTGTTC 60.238 42.308 0.00 0.00 29.74 3.18
4588 8975 6.255887 CGAAACAACATATACTCCTCTGTTCC 59.744 42.308 0.00 0.00 29.74 3.62
4589 8976 6.875972 AACAACATATACTCCTCTGTTCCT 57.124 37.500 0.00 0.00 29.74 3.36
4590 8977 7.973048 AACAACATATACTCCTCTGTTCCTA 57.027 36.000 0.00 0.00 29.74 2.94
4591 8978 7.973048 ACAACATATACTCCTCTGTTCCTAA 57.027 36.000 0.00 0.00 29.74 2.69
4592 8979 8.375493 ACAACATATACTCCTCTGTTCCTAAA 57.625 34.615 0.00 0.00 29.74 1.85
4593 8980 8.993424 ACAACATATACTCCTCTGTTCCTAAAT 58.007 33.333 0.00 0.00 29.74 1.40
4602 8989 9.495382 ACTCCTCTGTTCCTAAATATAAGTCTT 57.505 33.333 0.00 0.00 0.00 3.01
4628 9015 9.932207 TTTTTAGAGATTTCAATACGGACTACA 57.068 29.630 0.00 0.00 0.00 2.74
4632 9019 7.361127 AGAGATTTCAATACGGACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
4633 9020 6.444633 AGATTTCAATACGGACTACATACGG 58.555 40.000 0.00 0.00 0.00 4.02
4634 9021 5.833406 TTTCAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
4635 9022 6.395426 TTTCAATACGGACTACATACGGAT 57.605 37.500 0.00 0.00 31.40 4.18
4636 9023 5.366829 TCAATACGGACTACATACGGATG 57.633 43.478 5.94 5.94 39.16 3.51
4638 9025 5.997129 TCAATACGGACTACATACGGATGTA 59.003 40.000 19.32 19.32 44.77 2.29
4639 9026 6.656270 TCAATACGGACTACATACGGATGTAT 59.344 38.462 20.64 11.04 45.42 2.29
4640 9027 7.823799 TCAATACGGACTACATACGGATGTATA 59.176 37.037 20.64 10.32 45.42 1.47
4641 9028 8.618677 CAATACGGACTACATACGGATGTATAT 58.381 37.037 20.64 12.15 45.42 0.86
4642 9029 9.836864 AATACGGACTACATACGGATGTATATA 57.163 33.333 20.64 9.35 45.42 0.86
4643 9030 7.783090 ACGGACTACATACGGATGTATATAG 57.217 40.000 20.64 13.28 45.42 1.31
4644 9031 7.559486 ACGGACTACATACGGATGTATATAGA 58.441 38.462 20.64 0.00 45.42 1.98
4645 9032 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
4646 9033 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
4647 9034 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
4694 9081 9.945633 ATCTCTAAAAAGACTTATACTCCCTCT 57.054 33.333 0.00 0.00 0.00 3.69
4695 9082 9.191479 TCTCTAAAAAGACTTATACTCCCTCTG 57.809 37.037 0.00 0.00 0.00 3.35
4696 9083 8.896722 TCTAAAAAGACTTATACTCCCTCTGT 57.103 34.615 0.00 0.00 0.00 3.41
4697 9084 9.986157 TCTAAAAAGACTTATACTCCCTCTGTA 57.014 33.333 0.00 0.00 0.00 2.74
4700 9087 9.722184 AAAAAGACTTATACTCCCTCTGTAAAC 57.278 33.333 0.00 0.00 0.00 2.01
4701 9088 8.667592 AAAGACTTATACTCCCTCTGTAAACT 57.332 34.615 0.00 0.00 0.00 2.66
4702 9089 9.765295 AAAGACTTATACTCCCTCTGTAAACTA 57.235 33.333 0.00 0.00 0.00 2.24
4703 9090 9.765295 AAGACTTATACTCCCTCTGTAAACTAA 57.235 33.333 0.00 0.00 0.00 2.24
4704 9091 9.939424 AGACTTATACTCCCTCTGTAAACTAAT 57.061 33.333 0.00 0.00 0.00 1.73
4712 9099 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
4714 9101 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
4764 9151 9.688592 AAACGATCTTATATTAGTTTACGGAGG 57.311 33.333 0.00 0.00 31.14 4.30
4765 9152 7.824672 ACGATCTTATATTAGTTTACGGAGGG 58.175 38.462 0.00 0.00 0.00 4.30
4766 9153 7.667219 ACGATCTTATATTAGTTTACGGAGGGA 59.333 37.037 0.00 0.00 0.00 4.20
4767 9154 8.182881 CGATCTTATATTAGTTTACGGAGGGAG 58.817 40.741 0.00 0.00 0.00 4.30
4768 9155 8.953223 ATCTTATATTAGTTTACGGAGGGAGT 57.047 34.615 0.00 0.00 0.00 3.85
4775 9162 5.866159 AGTTTACGGAGGGAGTATTTAGG 57.134 43.478 0.00 0.00 0.00 2.69
4776 9163 5.522641 AGTTTACGGAGGGAGTATTTAGGA 58.477 41.667 0.00 0.00 0.00 2.94
4777 9164 5.960202 AGTTTACGGAGGGAGTATTTAGGAA 59.040 40.000 0.00 0.00 0.00 3.36
4778 9165 5.859205 TTACGGAGGGAGTATTTAGGAAC 57.141 43.478 0.00 0.00 0.00 3.62
4779 9166 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
4780 9167 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
4781 9168 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
4782 9169 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
4784 9171 5.134725 AGGGAGTATTTAGGAACGGAGTA 57.865 43.478 0.00 0.00 45.00 2.59
4785 9172 5.139001 AGGGAGTATTTAGGAACGGAGTAG 58.861 45.833 0.00 0.00 45.00 2.57
4786 9173 4.280425 GGGAGTATTTAGGAACGGAGTAGG 59.720 50.000 0.00 0.00 45.00 3.18
4787 9174 5.136105 GGAGTATTTAGGAACGGAGTAGGA 58.864 45.833 0.00 0.00 45.00 2.94
4788 9175 5.241285 GGAGTATTTAGGAACGGAGTAGGAG 59.759 48.000 0.00 0.00 45.00 3.69
4789 9176 5.139001 AGTATTTAGGAACGGAGTAGGAGG 58.861 45.833 0.00 0.00 45.00 4.30
4821 9208 7.777095 TGTGCTGTTTAAACAAATTAAGGAGT 58.223 30.769 20.89 0.00 38.66 3.85
4881 9268 2.165030 ACAGGCAACATAGCATCTTTGC 59.835 45.455 4.94 4.94 45.31 3.68
4914 9301 2.284754 TCTGCCAATACCAAACAGCA 57.715 45.000 0.00 0.00 0.00 4.41
4929 9316 1.621814 ACAGCAAAGCAAGCATGGAAT 59.378 42.857 0.00 0.00 0.00 3.01
4978 9365 9.391006 GAATACAGTGACTAATTTGATGGGTTA 57.609 33.333 0.00 0.00 0.00 2.85
4979 9366 9.920946 AATACAGTGACTAATTTGATGGGTTAT 57.079 29.630 0.00 0.00 0.00 1.89
4981 9368 8.732746 ACAGTGACTAATTTGATGGGTTATAC 57.267 34.615 0.00 0.00 0.00 1.47
4982 9369 8.548877 ACAGTGACTAATTTGATGGGTTATACT 58.451 33.333 0.00 0.00 0.00 2.12
4995 9382 8.158132 TGATGGGTTATACTAGTGTCAAAAACA 58.842 33.333 5.39 0.00 34.78 2.83
5047 9518 8.579850 ACATCATAAAGGTAAGCTGATTTCAA 57.420 30.769 0.00 0.00 0.00 2.69
5070 9542 9.378551 TCAAATAGTTCAACATATACACAGGAC 57.621 33.333 0.00 0.00 0.00 3.85
5133 9606 5.993441 CCATCACACTATCACATGATGCTAA 59.007 40.000 0.00 0.00 44.63 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.178276 TTGACAAACCCAACAACGCT 58.822 45.000 0.00 0.00 0.00 5.07
6 7 4.267452 CAGAATTTGACAAACCCAACAACG 59.733 41.667 1.94 0.00 0.00 4.10
20 21 2.777094 TCGTCATGTGGCAGAATTTGA 58.223 42.857 0.00 0.00 0.00 2.69
21 22 3.127376 TGATCGTCATGTGGCAGAATTTG 59.873 43.478 0.00 0.00 0.00 2.32
65 68 0.605319 CTTTGCGGCACTAGGAACCA 60.605 55.000 0.05 0.00 0.00 3.67
110 113 4.446371 GAGATCATTTGGAACTCCATCGT 58.554 43.478 0.00 0.00 46.97 3.73
139 143 2.760650 TGTGCTCGTCCTCACTGATTAT 59.239 45.455 0.00 0.00 34.49 1.28
171 175 1.883638 GCCACCTGATGCTTCTTCACA 60.884 52.381 0.88 0.00 0.00 3.58
174 178 1.093159 CTGCCACCTGATGCTTCTTC 58.907 55.000 0.88 0.00 0.00 2.87
175 179 0.964358 GCTGCCACCTGATGCTTCTT 60.964 55.000 0.88 0.00 0.00 2.52
176 180 1.378250 GCTGCCACCTGATGCTTCT 60.378 57.895 0.88 0.00 0.00 2.85
235 240 2.897207 CCATAGTCCGAACGGGCA 59.103 61.111 19.62 6.54 43.56 5.36
242 247 1.739667 CGACCATGCCATAGTCCGA 59.260 57.895 0.00 0.00 0.00 4.55
272 277 3.571590 CAGGGCCTCTCTGTCTAGTTAT 58.428 50.000 0.95 0.00 0.00 1.89
273 278 2.358300 CCAGGGCCTCTCTGTCTAGTTA 60.358 54.545 0.95 0.00 0.00 2.24
313 318 0.388134 CCTTGTACTCCACGGTCGTG 60.388 60.000 15.62 15.62 45.02 4.35
458 466 2.116238 GCTTCTACACCATCTACCCCA 58.884 52.381 0.00 0.00 0.00 4.96
470 478 1.605457 CGTTCACCTGCAGCTTCTACA 60.605 52.381 8.66 0.00 0.00 2.74
551 559 2.572104 GACAAGTTCCCTCCTATGTGGT 59.428 50.000 0.00 0.00 37.07 4.16
612 622 8.842358 ATCTATCGGTCAACTTCTTTTAACAA 57.158 30.769 0.00 0.00 0.00 2.83
698 710 6.745450 CGGCAACTTATAACATTTTACCACAG 59.255 38.462 0.00 0.00 0.00 3.66
708 720 3.267483 ACTTCGCGGCAACTTATAACAT 58.733 40.909 6.13 0.00 0.00 2.71
754 766 9.109533 CAACTTATAACATTTTACCACAACGTC 57.890 33.333 0.00 0.00 0.00 4.34
756 768 8.897809 CACAACTTATAACATTTTACCACAACG 58.102 33.333 0.00 0.00 0.00 4.10
789 801 9.787435 ACCACAACTTCAGAATAACTTATAACA 57.213 29.630 0.00 0.00 0.00 2.41
795 807 9.965824 CATAAAACCACAACTTCAGAATAACTT 57.034 29.630 0.00 0.00 0.00 2.66
796 808 9.131791 ACATAAAACCACAACTTCAGAATAACT 57.868 29.630 0.00 0.00 0.00 2.24
839 851 9.830975 TCCGACAAATATTTTCAGATGATAGAA 57.169 29.630 0.00 0.00 0.00 2.10
840 852 9.830975 TTCCGACAAATATTTTCAGATGATAGA 57.169 29.630 0.00 0.00 0.00 1.98
866 878 9.895138 CTCCCTTCATCATTTTTATCCATTTTT 57.105 29.630 0.00 0.00 0.00 1.94
867 879 9.050154 ACTCCCTTCATCATTTTTATCCATTTT 57.950 29.630 0.00 0.00 0.00 1.82
868 880 8.613922 ACTCCCTTCATCATTTTTATCCATTT 57.386 30.769 0.00 0.00 0.00 2.32
869 881 8.480501 CAACTCCCTTCATCATTTTTATCCATT 58.519 33.333 0.00 0.00 0.00 3.16
870 882 7.070322 CCAACTCCCTTCATCATTTTTATCCAT 59.930 37.037 0.00 0.00 0.00 3.41
871 883 6.380846 CCAACTCCCTTCATCATTTTTATCCA 59.619 38.462 0.00 0.00 0.00 3.41
872 884 6.607198 TCCAACTCCCTTCATCATTTTTATCC 59.393 38.462 0.00 0.00 0.00 2.59
873 885 7.484140 GTCCAACTCCCTTCATCATTTTTATC 58.516 38.462 0.00 0.00 0.00 1.75
874 886 6.095440 CGTCCAACTCCCTTCATCATTTTTAT 59.905 38.462 0.00 0.00 0.00 1.40
875 887 5.414454 CGTCCAACTCCCTTCATCATTTTTA 59.586 40.000 0.00 0.00 0.00 1.52
876 888 4.218417 CGTCCAACTCCCTTCATCATTTTT 59.782 41.667 0.00 0.00 0.00 1.94
877 889 3.758554 CGTCCAACTCCCTTCATCATTTT 59.241 43.478 0.00 0.00 0.00 1.82
878 890 3.009033 TCGTCCAACTCCCTTCATCATTT 59.991 43.478 0.00 0.00 0.00 2.32
879 891 2.571653 TCGTCCAACTCCCTTCATCATT 59.428 45.455 0.00 0.00 0.00 2.57
880 892 2.093447 GTCGTCCAACTCCCTTCATCAT 60.093 50.000 0.00 0.00 0.00 2.45
881 893 1.275291 GTCGTCCAACTCCCTTCATCA 59.725 52.381 0.00 0.00 0.00 3.07
882 894 1.275291 TGTCGTCCAACTCCCTTCATC 59.725 52.381 0.00 0.00 0.00 2.92
883 895 1.276421 CTGTCGTCCAACTCCCTTCAT 59.724 52.381 0.00 0.00 0.00 2.57
884 896 0.679505 CTGTCGTCCAACTCCCTTCA 59.320 55.000 0.00 0.00 0.00 3.02
885 897 0.680061 ACTGTCGTCCAACTCCCTTC 59.320 55.000 0.00 0.00 0.00 3.46
886 898 0.680061 GACTGTCGTCCAACTCCCTT 59.320 55.000 0.00 0.00 33.98 3.95
887 899 0.469331 TGACTGTCGTCCAACTCCCT 60.469 55.000 2.98 0.00 39.47 4.20
888 900 0.038159 CTGACTGTCGTCCAACTCCC 60.038 60.000 2.98 0.00 39.47 4.30
889 901 0.674534 ACTGACTGTCGTCCAACTCC 59.325 55.000 2.98 0.00 39.47 3.85
890 902 2.510768 AACTGACTGTCGTCCAACTC 57.489 50.000 2.98 0.00 39.47 3.01
891 903 2.483188 GGAAACTGACTGTCGTCCAACT 60.483 50.000 2.98 0.00 39.47 3.16
892 904 1.865340 GGAAACTGACTGTCGTCCAAC 59.135 52.381 2.98 0.00 39.47 3.77
893 905 1.483004 TGGAAACTGACTGTCGTCCAA 59.517 47.619 15.61 4.74 38.83 3.53
894 906 1.068588 CTGGAAACTGACTGTCGTCCA 59.931 52.381 16.49 16.49 39.21 4.02
895 907 1.784525 CTGGAAACTGACTGTCGTCC 58.215 55.000 2.98 7.79 39.47 4.79
899 911 0.108585 TGGGCTGGAAACTGACTGTC 59.891 55.000 0.00 0.00 37.48 3.51
902 914 0.398318 GACTGGGCTGGAAACTGACT 59.602 55.000 0.00 0.00 37.48 3.41
916 928 1.966451 GAAGTTGGCGGTGGACTGG 60.966 63.158 0.00 0.00 0.00 4.00
924 936 0.960861 GGAAAGAGGGAAGTTGGCGG 60.961 60.000 0.00 0.00 0.00 6.13
955 967 0.038310 GAGGAGGTCAGGTTTTGGGG 59.962 60.000 0.00 0.00 0.00 4.96
1207 1689 0.736325 AAAGATTCGGCGTCGTCTGG 60.736 55.000 10.18 0.00 37.69 3.86
1209 1691 0.458025 GGAAAGATTCGGCGTCGTCT 60.458 55.000 10.18 2.27 37.69 4.18
1305 1787 0.685097 TGGAGTCGGAGGAGTTTTGG 59.315 55.000 0.00 0.00 0.00 3.28
1306 1788 1.797025 GTGGAGTCGGAGGAGTTTTG 58.203 55.000 0.00 0.00 0.00 2.44
1438 1926 1.447489 CCACGAGGCTCAGCTTCAG 60.447 63.158 15.95 4.46 34.22 3.02
1693 2194 2.614983 GCCGGGCAAATTCGTATAGAAA 59.385 45.455 15.62 0.00 42.91 2.52
1744 2245 1.227089 CAGATCCGTCAGCTTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
1795 2296 3.642848 ACTGTTAGGACGTCCAAACCTTA 59.357 43.478 35.00 15.62 38.89 2.69
1884 2389 0.317269 CGCTGCTTGTCAAACACCTG 60.317 55.000 0.00 0.00 0.00 4.00
1910 2415 2.498905 CATTTGCAAGACATCGTCGTG 58.501 47.619 0.00 5.80 42.99 4.35
1977 2487 8.793592 ACCAAAAGAAAGGACAGAAATGTATAC 58.206 33.333 0.00 0.00 0.00 1.47
1978 2488 8.934023 ACCAAAAGAAAGGACAGAAATGTATA 57.066 30.769 0.00 0.00 0.00 1.47
1979 2489 7.839680 ACCAAAAGAAAGGACAGAAATGTAT 57.160 32.000 0.00 0.00 0.00 2.29
1980 2490 7.654022 AACCAAAAGAAAGGACAGAAATGTA 57.346 32.000 0.00 0.00 0.00 2.29
1981 2491 6.544928 AACCAAAAGAAAGGACAGAAATGT 57.455 33.333 0.00 0.00 0.00 2.71
2085 2650 3.838565 TGGGGTTCTTAATTGTCAAGCA 58.161 40.909 0.00 0.00 0.00 3.91
2166 2731 8.426489 ACAAGCATGATAATTGATGGCTAAAAT 58.574 29.630 0.00 0.00 0.00 1.82
2662 3256 1.737838 TAGCACAAGCCACAGTATGC 58.262 50.000 0.00 0.00 40.77 3.14
2761 3367 2.361757 CTGGTTCAATTCAACCTGCACA 59.638 45.455 12.83 0.00 45.54 4.57
2932 3540 6.415206 TGATCTGCAAGTGATATCAGATGA 57.585 37.500 17.67 4.26 43.84 2.92
2933 3541 6.706716 AGTTGATCTGCAAGTGATATCAGATG 59.293 38.462 5.42 9.29 43.84 2.90
2934 3542 6.828788 AGTTGATCTGCAAGTGATATCAGAT 58.171 36.000 5.42 4.14 45.73 2.90
2935 3543 6.231258 AGTTGATCTGCAAGTGATATCAGA 57.769 37.500 5.42 0.00 38.69 3.27
2936 3544 6.537660 TCAAGTTGATCTGCAAGTGATATCAG 59.462 38.462 5.42 0.00 40.01 2.90
2937 3545 6.408869 TCAAGTTGATCTGCAAGTGATATCA 58.591 36.000 0.00 0.00 40.01 2.15
2938 3546 6.511444 GCTCAAGTTGATCTGCAAGTGATATC 60.511 42.308 5.91 0.00 40.01 1.63
2939 3547 5.296283 GCTCAAGTTGATCTGCAAGTGATAT 59.704 40.000 5.91 0.00 40.01 1.63
2940 3548 4.633126 GCTCAAGTTGATCTGCAAGTGATA 59.367 41.667 5.91 0.00 40.01 2.15
2941 3549 3.439476 GCTCAAGTTGATCTGCAAGTGAT 59.561 43.478 5.91 0.00 40.01 3.06
2942 3550 2.810274 GCTCAAGTTGATCTGCAAGTGA 59.190 45.455 5.91 0.00 40.01 3.41
2943 3551 2.095364 GGCTCAAGTTGATCTGCAAGTG 60.095 50.000 15.16 0.00 40.01 3.16
2944 3552 2.157738 GGCTCAAGTTGATCTGCAAGT 58.842 47.619 15.16 0.00 41.88 3.16
2945 3553 2.434428 AGGCTCAAGTTGATCTGCAAG 58.566 47.619 15.16 0.77 37.12 4.01
2946 3554 2.574006 AGGCTCAAGTTGATCTGCAA 57.426 45.000 15.16 0.00 0.00 4.08
2947 3555 2.574006 AAGGCTCAAGTTGATCTGCA 57.426 45.000 15.16 0.00 0.00 4.41
2948 3556 3.080319 AGAAAGGCTCAAGTTGATCTGC 58.920 45.455 5.91 6.53 0.00 4.26
2949 3557 4.070716 ACAGAAAGGCTCAAGTTGATCTG 58.929 43.478 22.96 22.96 39.09 2.90
2950 3558 4.363991 ACAGAAAGGCTCAAGTTGATCT 57.636 40.909 5.91 3.04 0.00 2.75
2951 3559 5.389935 CGTAACAGAAAGGCTCAAGTTGATC 60.390 44.000 5.91 1.57 0.00 2.92
2952 3560 4.452455 CGTAACAGAAAGGCTCAAGTTGAT 59.548 41.667 5.91 0.00 0.00 2.57
2953 3561 3.807622 CGTAACAGAAAGGCTCAAGTTGA 59.192 43.478 5.25 5.25 0.00 3.18
2954 3562 3.807622 TCGTAACAGAAAGGCTCAAGTTG 59.192 43.478 0.00 0.00 0.00 3.16
2955 3563 4.067972 TCGTAACAGAAAGGCTCAAGTT 57.932 40.909 0.00 0.00 0.00 2.66
2956 3564 3.746045 TCGTAACAGAAAGGCTCAAGT 57.254 42.857 0.00 0.00 0.00 3.16
2957 3565 4.499183 AGATCGTAACAGAAAGGCTCAAG 58.501 43.478 0.00 0.00 0.00 3.02
2958 3566 4.537135 AGATCGTAACAGAAAGGCTCAA 57.463 40.909 0.00 0.00 0.00 3.02
2959 3567 4.537135 AAGATCGTAACAGAAAGGCTCA 57.463 40.909 0.00 0.00 0.00 4.26
2960 3568 6.508777 AGATAAGATCGTAACAGAAAGGCTC 58.491 40.000 0.00 0.00 0.00 4.70
2961 3569 6.472686 AGATAAGATCGTAACAGAAAGGCT 57.527 37.500 0.00 0.00 0.00 4.58
2962 3570 6.981559 AGAAGATAAGATCGTAACAGAAAGGC 59.018 38.462 0.00 0.00 0.00 4.35
2963 3571 7.043059 GCAGAAGATAAGATCGTAACAGAAAGG 60.043 40.741 0.00 0.00 0.00 3.11
2964 3572 7.489435 TGCAGAAGATAAGATCGTAACAGAAAG 59.511 37.037 0.00 0.00 0.00 2.62
2965 3573 7.320399 TGCAGAAGATAAGATCGTAACAGAAA 58.680 34.615 0.00 0.00 0.00 2.52
2966 3574 6.863275 TGCAGAAGATAAGATCGTAACAGAA 58.137 36.000 0.00 0.00 0.00 3.02
2967 3575 6.318900 TCTGCAGAAGATAAGATCGTAACAGA 59.681 38.462 15.67 0.00 0.00 3.41
2968 3576 6.416455 GTCTGCAGAAGATAAGATCGTAACAG 59.584 42.308 20.19 0.00 37.23 3.16
2969 3577 6.095580 AGTCTGCAGAAGATAAGATCGTAACA 59.904 38.462 20.19 0.00 37.23 2.41
2970 3578 6.500041 AGTCTGCAGAAGATAAGATCGTAAC 58.500 40.000 20.19 0.00 37.23 2.50
2971 3579 6.318900 TGAGTCTGCAGAAGATAAGATCGTAA 59.681 38.462 20.19 0.00 37.23 3.18
2972 3580 5.823045 TGAGTCTGCAGAAGATAAGATCGTA 59.177 40.000 20.19 0.00 37.23 3.43
2973 3581 4.642437 TGAGTCTGCAGAAGATAAGATCGT 59.358 41.667 20.19 0.00 37.23 3.73
2974 3582 5.180367 TGAGTCTGCAGAAGATAAGATCG 57.820 43.478 20.19 0.00 37.23 3.69
2975 3583 6.864685 CAGATGAGTCTGCAGAAGATAAGATC 59.135 42.308 20.19 12.38 44.86 2.75
2976 3584 6.751157 CAGATGAGTCTGCAGAAGATAAGAT 58.249 40.000 20.19 3.75 44.86 2.40
2977 3585 6.146601 CAGATGAGTCTGCAGAAGATAAGA 57.853 41.667 20.19 0.00 44.86 2.10
2989 3597 7.716179 GCTGCAAGTGATATCAGATGAGTCTG 61.716 46.154 17.67 0.00 44.60 3.51
2990 3598 5.739647 GCTGCAAGTGATATCAGATGAGTCT 60.740 44.000 17.67 3.50 35.30 3.24
2991 3599 4.448395 GCTGCAAGTGATATCAGATGAGTC 59.552 45.833 17.67 1.41 35.30 3.36
2992 3600 4.378774 GCTGCAAGTGATATCAGATGAGT 58.621 43.478 17.67 0.00 35.30 3.41
2993 3601 3.747010 GGCTGCAAGTGATATCAGATGAG 59.253 47.826 17.67 13.28 35.30 2.90
3101 3716 2.104111 ACCACTCACCAATCGACTCAAA 59.896 45.455 0.00 0.00 0.00 2.69
3102 3717 1.691976 ACCACTCACCAATCGACTCAA 59.308 47.619 0.00 0.00 0.00 3.02
3119 3734 1.072266 ACCCCAACTATGCTGAACCA 58.928 50.000 0.00 0.00 0.00 3.67
3398 4014 3.593096 CCGTAGACCAAAAGTTACCCTC 58.407 50.000 0.00 0.00 0.00 4.30
3403 4019 5.743636 ATACACCCGTAGACCAAAAGTTA 57.256 39.130 0.00 0.00 0.00 2.24
3544 4161 4.221041 TGAAAAGAAGTCAACGGGGTTTTT 59.779 37.500 0.00 0.00 0.00 1.94
3549 4166 2.846193 TCTGAAAAGAAGTCAACGGGG 58.154 47.619 0.00 0.00 0.00 5.73
3580 4197 7.968405 GTCACTATTCACTAATTTTGCCGAAAT 59.032 33.333 0.00 0.00 39.63 2.17
3645 4268 1.064946 CGCGAACAAAAACCCAGCA 59.935 52.632 0.00 0.00 0.00 4.41
3834 4457 4.546570 GACATTAGGTCAAGCAAAACCAC 58.453 43.478 4.50 0.00 46.19 4.16
3871 4494 7.998580 TCACATGCATATGAAATACACACAAT 58.001 30.769 4.88 0.00 37.73 2.71
3906 4529 9.461312 AATGTCAGCACTAAAACAGGATATTAA 57.539 29.630 0.00 0.00 0.00 1.40
4007 4630 8.121305 ACACAACAGCAATAATTCTAATTCCA 57.879 30.769 0.00 0.00 0.00 3.53
4307 8585 2.032620 ACAACTCTATAGACAGCGGGG 58.967 52.381 0.00 0.00 0.00 5.73
4371 8734 2.196925 AAACCGCATTCCCGTGCAA 61.197 52.632 0.00 0.00 45.30 4.08
4474 8838 3.849911 TCTAGTTCATTCGTGAAGGCAG 58.150 45.455 0.00 0.00 0.00 4.85
4475 8839 3.953712 TCTAGTTCATTCGTGAAGGCA 57.046 42.857 0.00 0.00 0.00 4.75
4508 8872 1.684983 CAGCAATCTAAGGCAATGGGG 59.315 52.381 0.00 0.00 0.00 4.96
4530 8894 3.730215 ATATGTTGTTACCAGGCACCA 57.270 42.857 0.00 0.00 0.00 4.17
4602 8989 9.932207 TGTAGTCCGTATTGAAATCTCTAAAAA 57.068 29.630 0.00 0.00 0.00 1.94
4606 8993 8.501580 CGTATGTAGTCCGTATTGAAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
4607 8994 7.361127 CGTATGTAGTCCGTATTGAAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
4608 8995 6.581542 CCGTATGTAGTCCGTATTGAAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
4609 8996 6.263842 TCCGTATGTAGTCCGTATTGAAATCT 59.736 38.462 0.00 0.00 0.00 2.40
4610 8997 6.441274 TCCGTATGTAGTCCGTATTGAAATC 58.559 40.000 0.00 0.00 0.00 2.17
4611 8998 6.395426 TCCGTATGTAGTCCGTATTGAAAT 57.605 37.500 0.00 0.00 0.00 2.17
4612 8999 5.833406 TCCGTATGTAGTCCGTATTGAAA 57.167 39.130 0.00 0.00 0.00 2.69
4613 9000 5.300034 ACATCCGTATGTAGTCCGTATTGAA 59.700 40.000 0.00 0.00 44.66 2.69
4614 9001 4.823442 ACATCCGTATGTAGTCCGTATTGA 59.177 41.667 0.00 0.00 44.66 2.57
4615 9002 5.117355 ACATCCGTATGTAGTCCGTATTG 57.883 43.478 0.00 0.00 44.66 1.90
4668 9055 9.945633 AGAGGGAGTATAAGTCTTTTTAGAGAT 57.054 33.333 0.00 0.00 0.00 2.75
4669 9056 9.191479 CAGAGGGAGTATAAGTCTTTTTAGAGA 57.809 37.037 0.00 0.00 0.00 3.10
4670 9057 8.973182 ACAGAGGGAGTATAAGTCTTTTTAGAG 58.027 37.037 0.00 0.00 0.00 2.43
4671 9058 8.896722 ACAGAGGGAGTATAAGTCTTTTTAGA 57.103 34.615 0.00 0.00 0.00 2.10
4674 9061 9.722184 GTTTACAGAGGGAGTATAAGTCTTTTT 57.278 33.333 0.00 0.00 0.00 1.94
4675 9062 9.102453 AGTTTACAGAGGGAGTATAAGTCTTTT 57.898 33.333 0.00 0.00 0.00 2.27
4676 9063 8.667592 AGTTTACAGAGGGAGTATAAGTCTTT 57.332 34.615 0.00 0.00 0.00 2.52
4677 9064 9.765295 TTAGTTTACAGAGGGAGTATAAGTCTT 57.235 33.333 0.00 0.00 0.00 3.01
4678 9065 9.939424 ATTAGTTTACAGAGGGAGTATAAGTCT 57.061 33.333 0.00 0.00 0.00 3.24
4686 9073 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
4688 9075 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
4738 9125 9.688592 CCTCCGTAAACTAATATAAGATCGTTT 57.311 33.333 0.00 0.00 0.00 3.60
4739 9126 8.302438 CCCTCCGTAAACTAATATAAGATCGTT 58.698 37.037 0.00 0.00 0.00 3.85
4740 9127 7.667219 TCCCTCCGTAAACTAATATAAGATCGT 59.333 37.037 0.00 0.00 0.00 3.73
4741 9128 8.048534 TCCCTCCGTAAACTAATATAAGATCG 57.951 38.462 0.00 0.00 0.00 3.69
4742 9129 9.022884 ACTCCCTCCGTAAACTAATATAAGATC 57.977 37.037 0.00 0.00 0.00 2.75
4743 9130 8.953223 ACTCCCTCCGTAAACTAATATAAGAT 57.047 34.615 0.00 0.00 0.00 2.40
4749 9136 9.082313 CCTAAATACTCCCTCCGTAAACTAATA 57.918 37.037 0.00 0.00 0.00 0.98
4750 9137 7.786464 TCCTAAATACTCCCTCCGTAAACTAAT 59.214 37.037 0.00 0.00 0.00 1.73
4751 9138 7.125391 TCCTAAATACTCCCTCCGTAAACTAA 58.875 38.462 0.00 0.00 0.00 2.24
4752 9139 6.672593 TCCTAAATACTCCCTCCGTAAACTA 58.327 40.000 0.00 0.00 0.00 2.24
4753 9140 5.522641 TCCTAAATACTCCCTCCGTAAACT 58.477 41.667 0.00 0.00 0.00 2.66
4754 9141 5.859205 TCCTAAATACTCCCTCCGTAAAC 57.141 43.478 0.00 0.00 0.00 2.01
4755 9142 5.163519 CGTTCCTAAATACTCCCTCCGTAAA 60.164 44.000 0.00 0.00 0.00 2.01
4756 9143 4.339247 CGTTCCTAAATACTCCCTCCGTAA 59.661 45.833 0.00 0.00 0.00 3.18
4757 9144 3.885297 CGTTCCTAAATACTCCCTCCGTA 59.115 47.826 0.00 0.00 0.00 4.02
4758 9145 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
4759 9146 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
4760 9147 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
4761 9148 3.959449 ACTCCGTTCCTAAATACTCCCTC 59.041 47.826 0.00 0.00 0.00 4.30
4762 9149 3.991683 ACTCCGTTCCTAAATACTCCCT 58.008 45.455 0.00 0.00 0.00 4.20
4763 9150 4.280425 CCTACTCCGTTCCTAAATACTCCC 59.720 50.000 0.00 0.00 0.00 4.30
4764 9151 5.136105 TCCTACTCCGTTCCTAAATACTCC 58.864 45.833 0.00 0.00 0.00 3.85
4765 9152 5.241285 CCTCCTACTCCGTTCCTAAATACTC 59.759 48.000 0.00 0.00 0.00 2.59
4766 9153 5.139001 CCTCCTACTCCGTTCCTAAATACT 58.861 45.833 0.00 0.00 0.00 2.12
4767 9154 4.892345 ACCTCCTACTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
4768 9155 5.134725 ACCTCCTACTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4769 9156 3.991683 ACCTCCTACTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4770 9157 3.463048 ACCTCCTACTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4771 9158 3.463048 AACCTCCTACTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4772 9159 3.117738 CCTAACCTCCTACTCCGTTCCTA 60.118 52.174 0.00 0.00 0.00 2.94
4773 9160 2.357986 CCTAACCTCCTACTCCGTTCCT 60.358 54.545 0.00 0.00 0.00 3.36
4774 9161 2.030371 CCTAACCTCCTACTCCGTTCC 58.970 57.143 0.00 0.00 0.00 3.62
4775 9162 1.408340 GCCTAACCTCCTACTCCGTTC 59.592 57.143 0.00 0.00 0.00 3.95
4776 9163 1.006878 AGCCTAACCTCCTACTCCGTT 59.993 52.381 0.00 0.00 0.00 4.44
4777 9164 0.630134 AGCCTAACCTCCTACTCCGT 59.370 55.000 0.00 0.00 0.00 4.69
4778 9165 1.033574 CAGCCTAACCTCCTACTCCG 58.966 60.000 0.00 0.00 0.00 4.63
4779 9166 1.757699 CACAGCCTAACCTCCTACTCC 59.242 57.143 0.00 0.00 0.00 3.85
4780 9167 1.137282 GCACAGCCTAACCTCCTACTC 59.863 57.143 0.00 0.00 0.00 2.59
4781 9168 1.196012 GCACAGCCTAACCTCCTACT 58.804 55.000 0.00 0.00 0.00 2.57
4782 9169 1.134670 CAGCACAGCCTAACCTCCTAC 60.135 57.143 0.00 0.00 0.00 3.18
4783 9170 1.195115 CAGCACAGCCTAACCTCCTA 58.805 55.000 0.00 0.00 0.00 2.94
4784 9171 0.838122 ACAGCACAGCCTAACCTCCT 60.838 55.000 0.00 0.00 0.00 3.69
4785 9172 0.036875 AACAGCACAGCCTAACCTCC 59.963 55.000 0.00 0.00 0.00 4.30
4786 9173 1.897560 AAACAGCACAGCCTAACCTC 58.102 50.000 0.00 0.00 0.00 3.85
4787 9174 3.502123 TTAAACAGCACAGCCTAACCT 57.498 42.857 0.00 0.00 0.00 3.50
4788 9175 3.316868 TGTTTAAACAGCACAGCCTAACC 59.683 43.478 17.01 0.00 34.30 2.85
4789 9176 4.561735 TGTTTAAACAGCACAGCCTAAC 57.438 40.909 17.01 0.00 34.30 2.34
4881 9268 7.448161 TGGTATTGGCAGATTATTGGATGTTAG 59.552 37.037 0.00 0.00 0.00 2.34
4929 9316 5.476254 TCCATTGATTTGTAAGTGTGATGCA 59.524 36.000 0.00 0.00 0.00 3.96
4988 9375 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
4995 9382 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
5001 9388 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5047 9518 9.959721 AAAGTCCTGTGTATATGTTGAACTATT 57.040 29.630 0.00 0.00 0.00 1.73
5133 9606 7.280652 GTGGCTGTGCATAATGGAAAATAAAAT 59.719 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.