Multiple sequence alignment - TraesCS6D01G126800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G126800 chr6D 100.000 2758 0 0 1 2758 90445076 90442319 0.000000e+00 5094
1 TraesCS6D01G126800 chr6D 83.673 784 75 21 1953 2733 434458187 434457454 0.000000e+00 689
2 TraesCS6D01G126800 chr6D 80.529 529 81 17 1953 2475 286638726 286639238 1.200000e-103 387
3 TraesCS6D01G126800 chr6A 89.507 1401 80 17 331 1675 108207433 108208822 0.000000e+00 1711
4 TraesCS6D01G126800 chr6B 92.094 1151 57 13 331 1448 172332640 172333789 0.000000e+00 1591
5 TraesCS6D01G126800 chr3D 85.906 745 89 9 1968 2709 74327645 74326914 0.000000e+00 780
6 TraesCS6D01G126800 chr3D 83.940 797 109 16 1966 2757 228167336 228166554 0.000000e+00 745
7 TraesCS6D01G126800 chr3D 89.910 446 41 3 2307 2749 178404409 178403965 3.080000e-159 571
8 TraesCS6D01G126800 chr3D 89.021 419 41 3 2328 2746 586569072 586569485 5.270000e-142 514
9 TraesCS6D01G126800 chr2A 89.663 445 45 1 2307 2751 16710636 16711079 1.430000e-157 566
10 TraesCS6D01G126800 chr7A 89.087 449 42 3 2306 2754 632515054 632515495 4.010000e-153 551
11 TraesCS6D01G126800 chr7A 88.525 427 48 1 2328 2754 374007802 374007377 1.460000e-142 516
12 TraesCS6D01G126800 chr7A 87.789 303 34 3 1953 2252 632514726 632515028 4.370000e-93 351
13 TraesCS6D01G126800 chr1A 85.145 552 66 11 1953 2501 230467828 230468366 4.010000e-153 551
14 TraesCS6D01G126800 chr7D 89.559 431 37 6 2328 2758 167590647 167590225 8.690000e-150 540
15 TraesCS6D01G126800 chr7D 78.992 833 131 21 1953 2758 610241477 610242292 1.880000e-146 529
16 TraesCS6D01G126800 chr7D 80.150 534 83 14 1953 2478 458523160 458522642 7.210000e-101 377
17 TraesCS6D01G126800 chr7D 86.307 241 25 6 1 233 105225526 105225766 3.520000e-64 255
18 TraesCS6D01G126800 chr2B 88.626 422 46 2 2328 2749 20710127 20709708 1.890000e-141 512
19 TraesCS6D01G126800 chr4B 87.423 326 38 3 1953 2276 378034549 378034225 3.350000e-99 372
20 TraesCS6D01G126800 chr5D 85.498 331 40 8 1953 2278 28319593 28319920 3.400000e-89 339
21 TraesCS6D01G126800 chr5D 90.654 214 17 2 1 211 474748959 474749172 5.820000e-72 281
22 TraesCS6D01G126800 chr3B 78.908 531 88 15 1953 2475 267222946 267223460 3.400000e-89 339
23 TraesCS6D01G126800 chr1D 88.382 241 23 4 1 238 226472105 226471867 4.500000e-73 285
24 TraesCS6D01G126800 chr7B 84.064 251 28 7 1 241 63781084 63781332 5.940000e-57 231
25 TraesCS6D01G126800 chr7B 89.552 134 13 1 1 134 704480353 704480221 4.720000e-38 169
26 TraesCS6D01G126800 chr4D 90.551 127 10 2 1 127 277383766 277383890 1.700000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G126800 chr6D 90442319 90445076 2757 True 5094 5094 100.000 1 2758 1 chr6D.!!$R1 2757
1 TraesCS6D01G126800 chr6D 434457454 434458187 733 True 689 689 83.673 1953 2733 1 chr6D.!!$R2 780
2 TraesCS6D01G126800 chr6D 286638726 286639238 512 False 387 387 80.529 1953 2475 1 chr6D.!!$F1 522
3 TraesCS6D01G126800 chr6A 108207433 108208822 1389 False 1711 1711 89.507 331 1675 1 chr6A.!!$F1 1344
4 TraesCS6D01G126800 chr6B 172332640 172333789 1149 False 1591 1591 92.094 331 1448 1 chr6B.!!$F1 1117
5 TraesCS6D01G126800 chr3D 74326914 74327645 731 True 780 780 85.906 1968 2709 1 chr3D.!!$R1 741
6 TraesCS6D01G126800 chr3D 228166554 228167336 782 True 745 745 83.940 1966 2757 1 chr3D.!!$R3 791
7 TraesCS6D01G126800 chr7A 632514726 632515495 769 False 451 551 88.438 1953 2754 2 chr7A.!!$F1 801
8 TraesCS6D01G126800 chr1A 230467828 230468366 538 False 551 551 85.145 1953 2501 1 chr1A.!!$F1 548
9 TraesCS6D01G126800 chr7D 610241477 610242292 815 False 529 529 78.992 1953 2758 1 chr7D.!!$F2 805
10 TraesCS6D01G126800 chr7D 458522642 458523160 518 True 377 377 80.150 1953 2478 1 chr7D.!!$R2 525
11 TraesCS6D01G126800 chr3B 267222946 267223460 514 False 339 339 78.908 1953 2475 1 chr3B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.095245 CATTACGCCTTGTCGTGCAG 59.905 55.0 0.0 0.0 43.21 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 2290 0.033208 ACATTTGCCATCCCGGATGT 60.033 50.0 23.27 4.36 38.28 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.614124 AATGCAAATATTTGTTGGGAATCAC 57.386 32.000 25.15 8.58 40.24 3.06
25 26 6.357579 TGCAAATATTTGTTGGGAATCACT 57.642 33.333 25.15 0.00 40.24 3.41
26 27 7.473735 TGCAAATATTTGTTGGGAATCACTA 57.526 32.000 25.15 0.00 40.24 2.74
27 28 7.901029 TGCAAATATTTGTTGGGAATCACTAA 58.099 30.769 25.15 0.00 40.24 2.24
28 29 8.034215 TGCAAATATTTGTTGGGAATCACTAAG 58.966 33.333 25.15 0.00 40.24 2.18
29 30 8.250332 GCAAATATTTGTTGGGAATCACTAAGA 58.750 33.333 25.15 0.00 40.24 2.10
32 33 6.840780 ATTTGTTGGGAATCACTAAGAAGG 57.159 37.500 0.00 0.00 0.00 3.46
33 34 5.576563 TTGTTGGGAATCACTAAGAAGGA 57.423 39.130 0.00 0.00 0.00 3.36
34 35 5.576563 TGTTGGGAATCACTAAGAAGGAA 57.423 39.130 0.00 0.00 0.00 3.36
35 36 5.313712 TGTTGGGAATCACTAAGAAGGAAC 58.686 41.667 0.00 0.00 0.00 3.62
36 37 4.202245 TGGGAATCACTAAGAAGGAACG 57.798 45.455 0.00 0.00 0.00 3.95
37 38 3.835978 TGGGAATCACTAAGAAGGAACGA 59.164 43.478 0.00 0.00 0.00 3.85
38 39 4.182339 GGGAATCACTAAGAAGGAACGAC 58.818 47.826 0.00 0.00 0.00 4.34
39 40 4.322499 GGGAATCACTAAGAAGGAACGACA 60.322 45.833 0.00 0.00 0.00 4.35
40 41 5.235516 GGAATCACTAAGAAGGAACGACAA 58.764 41.667 0.00 0.00 0.00 3.18
41 42 5.120363 GGAATCACTAAGAAGGAACGACAAC 59.880 44.000 0.00 0.00 0.00 3.32
42 43 4.659111 TCACTAAGAAGGAACGACAACA 57.341 40.909 0.00 0.00 0.00 3.33
43 44 5.013568 TCACTAAGAAGGAACGACAACAA 57.986 39.130 0.00 0.00 0.00 2.83
44 45 5.421277 TCACTAAGAAGGAACGACAACAAA 58.579 37.500 0.00 0.00 0.00 2.83
45 46 5.522460 TCACTAAGAAGGAACGACAACAAAG 59.478 40.000 0.00 0.00 0.00 2.77
46 47 4.814771 ACTAAGAAGGAACGACAACAAAGG 59.185 41.667 0.00 0.00 0.00 3.11
47 48 1.947456 AGAAGGAACGACAACAAAGGC 59.053 47.619 0.00 0.00 0.00 4.35
48 49 0.661020 AAGGAACGACAACAAAGGCG 59.339 50.000 0.00 0.00 0.00 5.52
49 50 0.463116 AGGAACGACAACAAAGGCGT 60.463 50.000 0.00 0.00 38.81 5.68
50 51 1.202557 AGGAACGACAACAAAGGCGTA 60.203 47.619 0.00 0.00 35.74 4.42
51 52 1.598601 GGAACGACAACAAAGGCGTAA 59.401 47.619 0.00 0.00 35.74 3.18
52 53 2.031930 GGAACGACAACAAAGGCGTAAA 59.968 45.455 0.00 0.00 35.74 2.01
53 54 3.487209 GGAACGACAACAAAGGCGTAAAA 60.487 43.478 0.00 0.00 35.74 1.52
54 55 3.761311 ACGACAACAAAGGCGTAAAAA 57.239 38.095 0.00 0.00 34.93 1.94
55 56 3.687200 ACGACAACAAAGGCGTAAAAAG 58.313 40.909 0.00 0.00 34.93 2.27
56 57 3.374678 ACGACAACAAAGGCGTAAAAAGA 59.625 39.130 0.00 0.00 34.93 2.52
57 58 4.035909 ACGACAACAAAGGCGTAAAAAGAT 59.964 37.500 0.00 0.00 34.93 2.40
58 59 5.236911 ACGACAACAAAGGCGTAAAAAGATA 59.763 36.000 0.00 0.00 34.93 1.98
59 60 5.788531 CGACAACAAAGGCGTAAAAAGATAG 59.211 40.000 0.00 0.00 0.00 2.08
60 61 5.458015 ACAACAAAGGCGTAAAAAGATAGC 58.542 37.500 0.00 0.00 0.00 2.97
61 62 4.336532 ACAAAGGCGTAAAAAGATAGCG 57.663 40.909 0.00 0.00 0.00 4.26
62 63 3.126343 ACAAAGGCGTAAAAAGATAGCGG 59.874 43.478 0.00 0.00 0.00 5.52
63 64 1.296727 AGGCGTAAAAAGATAGCGGC 58.703 50.000 0.00 0.00 46.12 6.53
64 65 1.011333 GGCGTAAAAAGATAGCGGCA 58.989 50.000 1.45 0.00 45.31 5.69
65 66 1.399089 GGCGTAAAAAGATAGCGGCAA 59.601 47.619 1.45 0.00 45.31 4.52
66 67 2.437626 GCGTAAAAAGATAGCGGCAAC 58.562 47.619 1.45 0.00 0.00 4.17
67 68 2.095372 GCGTAAAAAGATAGCGGCAACT 59.905 45.455 1.45 0.00 0.00 3.16
68 69 3.307782 GCGTAAAAAGATAGCGGCAACTA 59.692 43.478 1.45 0.00 0.00 2.24
69 70 4.550255 GCGTAAAAAGATAGCGGCAACTAG 60.550 45.833 1.45 0.00 0.00 2.57
70 71 4.025979 CGTAAAAAGATAGCGGCAACTAGG 60.026 45.833 1.45 0.00 0.00 3.02
71 72 3.629142 AAAAGATAGCGGCAACTAGGT 57.371 42.857 1.45 0.00 0.00 3.08
72 73 4.748277 AAAAGATAGCGGCAACTAGGTA 57.252 40.909 1.45 0.00 0.00 3.08
73 74 4.323553 AAAGATAGCGGCAACTAGGTAG 57.676 45.455 1.45 0.00 0.00 3.18
74 75 3.225177 AGATAGCGGCAACTAGGTAGA 57.775 47.619 1.45 0.00 0.00 2.59
75 76 3.768878 AGATAGCGGCAACTAGGTAGAT 58.231 45.455 1.45 0.00 0.00 1.98
76 77 4.919793 AGATAGCGGCAACTAGGTAGATA 58.080 43.478 1.45 0.00 0.00 1.98
77 78 5.511363 AGATAGCGGCAACTAGGTAGATAT 58.489 41.667 1.45 0.00 0.00 1.63
78 79 5.952947 AGATAGCGGCAACTAGGTAGATATT 59.047 40.000 1.45 0.00 0.00 1.28
79 80 4.957684 AGCGGCAACTAGGTAGATATTT 57.042 40.909 1.45 0.00 0.00 1.40
80 81 5.291905 AGCGGCAACTAGGTAGATATTTT 57.708 39.130 1.45 0.00 0.00 1.82
81 82 5.057149 AGCGGCAACTAGGTAGATATTTTG 58.943 41.667 1.45 0.00 0.00 2.44
82 83 4.213482 GCGGCAACTAGGTAGATATTTTGG 59.787 45.833 0.00 0.00 0.00 3.28
83 84 5.365619 CGGCAACTAGGTAGATATTTTGGT 58.634 41.667 0.00 0.00 0.00 3.67
84 85 6.518493 CGGCAACTAGGTAGATATTTTGGTA 58.482 40.000 0.00 0.00 0.00 3.25
85 86 6.645415 CGGCAACTAGGTAGATATTTTGGTAG 59.355 42.308 0.00 0.00 0.00 3.18
86 87 7.506971 GGCAACTAGGTAGATATTTTGGTAGT 58.493 38.462 0.00 0.00 0.00 2.73
87 88 7.656542 GGCAACTAGGTAGATATTTTGGTAGTC 59.343 40.741 0.00 0.00 0.00 2.59
88 89 8.422566 GCAACTAGGTAGATATTTTGGTAGTCT 58.577 37.037 0.00 0.00 0.00 3.24
98 99 9.326413 AGATATTTTGGTAGTCTAACAAATCGG 57.674 33.333 21.01 0.00 44.10 4.18
99 100 6.753107 ATTTTGGTAGTCTAACAAATCGGG 57.247 37.500 21.01 0.00 44.10 5.14
100 101 5.486735 TTTGGTAGTCTAACAAATCGGGA 57.513 39.130 17.41 0.00 40.20 5.14
101 102 5.486735 TTGGTAGTCTAACAAATCGGGAA 57.513 39.130 7.93 0.00 31.29 3.97
102 103 4.824289 TGGTAGTCTAACAAATCGGGAAC 58.176 43.478 0.00 0.00 0.00 3.62
103 104 4.283978 TGGTAGTCTAACAAATCGGGAACA 59.716 41.667 0.00 0.00 0.00 3.18
104 105 4.628766 GGTAGTCTAACAAATCGGGAACAC 59.371 45.833 0.00 0.00 0.00 3.32
105 106 3.671716 AGTCTAACAAATCGGGAACACC 58.328 45.455 0.00 0.00 0.00 4.16
106 107 3.326880 AGTCTAACAAATCGGGAACACCT 59.673 43.478 0.00 0.00 36.97 4.00
107 108 4.070009 GTCTAACAAATCGGGAACACCTT 58.930 43.478 0.00 0.00 36.97 3.50
108 109 4.069304 TCTAACAAATCGGGAACACCTTG 58.931 43.478 0.00 0.00 36.97 3.61
109 110 2.649531 ACAAATCGGGAACACCTTGA 57.350 45.000 0.00 0.00 36.97 3.02
110 111 2.227194 ACAAATCGGGAACACCTTGAC 58.773 47.619 0.00 0.00 36.97 3.18
111 112 2.158667 ACAAATCGGGAACACCTTGACT 60.159 45.455 0.00 0.00 36.97 3.41
112 113 3.071892 ACAAATCGGGAACACCTTGACTA 59.928 43.478 0.00 0.00 36.97 2.59
113 114 3.329929 AATCGGGAACACCTTGACTAC 57.670 47.619 0.00 0.00 36.97 2.73
114 115 1.707106 TCGGGAACACCTTGACTACA 58.293 50.000 0.00 0.00 36.97 2.74
115 116 1.342174 TCGGGAACACCTTGACTACAC 59.658 52.381 0.00 0.00 36.97 2.90
116 117 1.343465 CGGGAACACCTTGACTACACT 59.657 52.381 0.00 0.00 36.97 3.55
117 118 2.559668 CGGGAACACCTTGACTACACTA 59.440 50.000 0.00 0.00 36.97 2.74
118 119 3.006110 CGGGAACACCTTGACTACACTAA 59.994 47.826 0.00 0.00 36.97 2.24
119 120 4.501915 CGGGAACACCTTGACTACACTAAA 60.502 45.833 0.00 0.00 36.97 1.85
120 121 5.370679 GGGAACACCTTGACTACACTAAAA 58.629 41.667 0.00 0.00 35.85 1.52
121 122 5.824097 GGGAACACCTTGACTACACTAAAAA 59.176 40.000 0.00 0.00 35.85 1.94
122 123 6.489022 GGGAACACCTTGACTACACTAAAAAT 59.511 38.462 0.00 0.00 35.85 1.82
123 124 7.308408 GGGAACACCTTGACTACACTAAAAATC 60.308 40.741 0.00 0.00 35.85 2.17
124 125 7.227910 GGAACACCTTGACTACACTAAAAATCA 59.772 37.037 0.00 0.00 0.00 2.57
125 126 8.691661 AACACCTTGACTACACTAAAAATCAT 57.308 30.769 0.00 0.00 0.00 2.45
126 127 8.691661 ACACCTTGACTACACTAAAAATCATT 57.308 30.769 0.00 0.00 0.00 2.57
127 128 9.787435 ACACCTTGACTACACTAAAAATCATTA 57.213 29.630 0.00 0.00 0.00 1.90
129 130 8.932791 ACCTTGACTACACTAAAAATCATTACG 58.067 33.333 0.00 0.00 0.00 3.18
130 131 7.903431 CCTTGACTACACTAAAAATCATTACGC 59.097 37.037 0.00 0.00 0.00 4.42
131 132 7.298507 TGACTACACTAAAAATCATTACGCC 57.701 36.000 0.00 0.00 0.00 5.68
132 133 7.101054 TGACTACACTAAAAATCATTACGCCT 58.899 34.615 0.00 0.00 0.00 5.52
133 134 7.604927 TGACTACACTAAAAATCATTACGCCTT 59.395 33.333 0.00 0.00 0.00 4.35
134 135 7.748847 ACTACACTAAAAATCATTACGCCTTG 58.251 34.615 0.00 0.00 0.00 3.61
135 136 6.569179 ACACTAAAAATCATTACGCCTTGT 57.431 33.333 0.00 0.00 0.00 3.16
136 137 6.608610 ACACTAAAAATCATTACGCCTTGTC 58.391 36.000 0.00 0.00 0.00 3.18
137 138 5.732647 CACTAAAAATCATTACGCCTTGTCG 59.267 40.000 0.00 0.00 0.00 4.35
138 139 4.759516 AAAAATCATTACGCCTTGTCGT 57.240 36.364 0.00 0.00 45.49 4.34
139 140 3.740044 AAATCATTACGCCTTGTCGTG 57.260 42.857 0.00 0.00 43.21 4.35
140 141 1.006832 ATCATTACGCCTTGTCGTGC 58.993 50.000 0.00 0.00 43.21 5.34
141 142 0.319986 TCATTACGCCTTGTCGTGCA 60.320 50.000 0.00 0.00 43.21 4.57
142 143 0.095245 CATTACGCCTTGTCGTGCAG 59.905 55.000 0.00 0.00 43.21 4.41
143 144 1.635663 ATTACGCCTTGTCGTGCAGC 61.636 55.000 0.00 0.00 43.21 5.25
144 145 2.980213 TTACGCCTTGTCGTGCAGCA 62.980 55.000 0.00 0.00 43.21 4.41
145 146 2.779951 TACGCCTTGTCGTGCAGCAT 62.780 55.000 0.00 0.00 43.21 3.79
146 147 2.482374 GCCTTGTCGTGCAGCATC 59.518 61.111 0.00 0.00 0.00 3.91
147 148 2.780643 CCTTGTCGTGCAGCATCG 59.219 61.111 0.00 4.61 0.00 3.84
148 149 2.029288 CCTTGTCGTGCAGCATCGT 61.029 57.895 14.39 0.00 0.00 3.73
149 150 1.131218 CTTGTCGTGCAGCATCGTG 59.869 57.895 14.39 0.16 0.00 4.35
150 151 1.284297 CTTGTCGTGCAGCATCGTGA 61.284 55.000 14.39 2.31 0.00 4.35
151 152 0.878086 TTGTCGTGCAGCATCGTGAA 60.878 50.000 14.39 7.88 0.00 3.18
152 153 0.878086 TGTCGTGCAGCATCGTGAAA 60.878 50.000 14.39 0.00 0.00 2.69
153 154 0.179240 GTCGTGCAGCATCGTGAAAG 60.179 55.000 14.39 0.00 0.00 2.62
154 155 1.510623 CGTGCAGCATCGTGAAAGC 60.511 57.895 0.00 0.00 0.00 3.51
155 156 1.871772 GTGCAGCATCGTGAAAGCT 59.128 52.632 0.00 0.00 39.63 3.74
156 157 0.239347 GTGCAGCATCGTGAAAGCTT 59.761 50.000 0.00 0.00 36.26 3.74
157 158 0.953727 TGCAGCATCGTGAAAGCTTT 59.046 45.000 12.53 12.53 36.26 3.51
158 159 1.069022 TGCAGCATCGTGAAAGCTTTC 60.069 47.619 28.61 28.61 36.26 2.62
159 160 1.069022 GCAGCATCGTGAAAGCTTTCA 60.069 47.619 32.86 32.86 44.31 2.69
177 178 8.679288 AGCTTTCAAAGAATTTATTGATGTCG 57.321 30.769 0.00 0.00 35.03 4.35
178 179 8.299570 AGCTTTCAAAGAATTTATTGATGTCGT 58.700 29.630 0.00 0.00 35.03 4.34
179 180 8.578769 GCTTTCAAAGAATTTATTGATGTCGTC 58.421 33.333 0.00 0.00 35.03 4.20
180 181 8.653984 TTTCAAAGAATTTATTGATGTCGTCG 57.346 30.769 7.44 0.00 35.03 5.12
181 182 6.771076 TCAAAGAATTTATTGATGTCGTCGG 58.229 36.000 3.50 0.00 35.03 4.79
182 183 6.592220 TCAAAGAATTTATTGATGTCGTCGGA 59.408 34.615 3.50 0.00 35.03 4.55
183 184 7.279981 TCAAAGAATTTATTGATGTCGTCGGAT 59.720 33.333 3.50 0.00 35.03 4.18
184 185 6.530913 AGAATTTATTGATGTCGTCGGATG 57.469 37.500 0.00 0.00 0.00 3.51
185 186 6.049149 AGAATTTATTGATGTCGTCGGATGT 58.951 36.000 0.00 0.00 0.00 3.06
186 187 5.657470 ATTTATTGATGTCGTCGGATGTG 57.343 39.130 0.00 0.00 0.00 3.21
187 188 2.672961 ATTGATGTCGTCGGATGTGT 57.327 45.000 0.00 0.00 0.00 3.72
188 189 3.793797 ATTGATGTCGTCGGATGTGTA 57.206 42.857 0.00 0.00 0.00 2.90
189 190 3.793797 TTGATGTCGTCGGATGTGTAT 57.206 42.857 0.00 0.00 0.00 2.29
190 191 3.078594 TGATGTCGTCGGATGTGTATG 57.921 47.619 0.00 0.00 0.00 2.39
191 192 2.685897 TGATGTCGTCGGATGTGTATGA 59.314 45.455 0.00 0.00 0.00 2.15
192 193 2.844122 TGTCGTCGGATGTGTATGAG 57.156 50.000 0.00 0.00 0.00 2.90
193 194 1.404035 TGTCGTCGGATGTGTATGAGG 59.596 52.381 0.00 0.00 0.00 3.86
194 195 1.029681 TCGTCGGATGTGTATGAGGG 58.970 55.000 0.00 0.00 0.00 4.30
195 196 1.029681 CGTCGGATGTGTATGAGGGA 58.970 55.000 0.00 0.00 0.00 4.20
196 197 1.613925 CGTCGGATGTGTATGAGGGAT 59.386 52.381 0.00 0.00 0.00 3.85
197 198 2.351835 CGTCGGATGTGTATGAGGGATC 60.352 54.545 0.00 0.00 0.00 3.36
198 199 2.628178 GTCGGATGTGTATGAGGGATCA 59.372 50.000 0.00 0.00 0.00 2.92
199 200 3.259374 GTCGGATGTGTATGAGGGATCAT 59.741 47.826 0.00 0.00 0.00 2.45
200 201 3.903714 TCGGATGTGTATGAGGGATCATT 59.096 43.478 0.00 0.00 0.00 2.57
201 202 4.347876 TCGGATGTGTATGAGGGATCATTT 59.652 41.667 0.00 0.00 0.00 2.32
202 203 5.065914 CGGATGTGTATGAGGGATCATTTT 58.934 41.667 0.00 0.00 0.00 1.82
203 204 5.532406 CGGATGTGTATGAGGGATCATTTTT 59.468 40.000 0.00 0.00 0.00 1.94
223 224 3.443054 TTTTTCTCGATTAACGCACGG 57.557 42.857 0.00 0.00 42.26 4.94
224 225 2.350899 TTTCTCGATTAACGCACGGA 57.649 45.000 0.00 0.00 42.26 4.69
225 226 1.621107 TTCTCGATTAACGCACGGAC 58.379 50.000 0.00 0.00 42.26 4.79
226 227 0.522626 TCTCGATTAACGCACGGACA 59.477 50.000 0.00 0.00 42.26 4.02
227 228 1.133598 TCTCGATTAACGCACGGACAT 59.866 47.619 0.00 0.00 42.26 3.06
228 229 1.255342 CTCGATTAACGCACGGACATG 59.745 52.381 0.00 0.00 42.26 3.21
229 230 0.996462 CGATTAACGCACGGACATGT 59.004 50.000 0.00 0.00 34.51 3.21
230 231 1.392168 CGATTAACGCACGGACATGTT 59.608 47.619 0.00 0.00 34.51 2.71
231 232 2.159761 CGATTAACGCACGGACATGTTT 60.160 45.455 0.00 0.00 34.51 2.83
232 233 2.672188 TTAACGCACGGACATGTTTG 57.328 45.000 0.00 0.00 0.00 2.93
233 234 0.236187 TAACGCACGGACATGTTTGC 59.764 50.000 14.78 14.78 0.00 3.68
234 235 1.444119 AACGCACGGACATGTTTGCT 61.444 50.000 19.71 9.05 32.56 3.91
235 236 0.601576 ACGCACGGACATGTTTGCTA 60.602 50.000 19.71 0.00 32.56 3.49
236 237 0.095245 CGCACGGACATGTTTGCTAG 59.905 55.000 19.71 7.23 32.56 3.42
237 238 1.156736 GCACGGACATGTTTGCTAGT 58.843 50.000 16.62 2.97 32.00 2.57
238 239 1.128692 GCACGGACATGTTTGCTAGTC 59.871 52.381 16.62 0.00 32.00 2.59
239 240 1.390123 CACGGACATGTTTGCTAGTCG 59.610 52.381 0.00 0.00 31.93 4.18
240 241 1.271379 ACGGACATGTTTGCTAGTCGA 59.729 47.619 0.00 0.00 31.93 4.20
241 242 2.288579 ACGGACATGTTTGCTAGTCGAA 60.289 45.455 0.00 0.00 31.93 3.71
242 243 2.930040 CGGACATGTTTGCTAGTCGAAT 59.070 45.455 0.00 0.00 31.93 3.34
243 244 3.242091 CGGACATGTTTGCTAGTCGAATG 60.242 47.826 0.00 0.00 31.93 2.67
244 245 3.932710 GGACATGTTTGCTAGTCGAATGA 59.067 43.478 0.00 0.00 31.93 2.57
245 246 4.391830 GGACATGTTTGCTAGTCGAATGAA 59.608 41.667 0.00 0.00 31.93 2.57
246 247 5.106712 GGACATGTTTGCTAGTCGAATGAAA 60.107 40.000 0.00 0.00 31.93 2.69
247 248 6.312399 ACATGTTTGCTAGTCGAATGAAAA 57.688 33.333 0.00 0.00 0.00 2.29
248 249 6.734137 ACATGTTTGCTAGTCGAATGAAAAA 58.266 32.000 0.00 0.00 0.00 1.94
249 250 6.636850 ACATGTTTGCTAGTCGAATGAAAAAC 59.363 34.615 0.00 4.12 0.00 2.43
250 251 6.125327 TGTTTGCTAGTCGAATGAAAAACA 57.875 33.333 13.91 13.91 34.80 2.83
251 252 6.198687 TGTTTGCTAGTCGAATGAAAAACAG 58.801 36.000 13.91 0.00 32.89 3.16
252 253 6.037720 TGTTTGCTAGTCGAATGAAAAACAGA 59.962 34.615 13.91 0.00 32.89 3.41
253 254 6.801539 TTGCTAGTCGAATGAAAAACAGAT 57.198 33.333 0.00 0.00 0.00 2.90
254 255 7.899178 TTGCTAGTCGAATGAAAAACAGATA 57.101 32.000 0.00 0.00 0.00 1.98
255 256 7.525688 TGCTAGTCGAATGAAAAACAGATAG 57.474 36.000 0.00 0.00 0.00 2.08
256 257 7.097192 TGCTAGTCGAATGAAAAACAGATAGT 58.903 34.615 0.00 0.00 0.00 2.12
257 258 7.602644 TGCTAGTCGAATGAAAAACAGATAGTT 59.397 33.333 0.00 0.00 43.89 2.24
272 273 6.449698 ACAGATAGTTTTGCTGTTGATTTGG 58.550 36.000 0.00 0.00 39.69 3.28
273 274 6.265196 ACAGATAGTTTTGCTGTTGATTTGGA 59.735 34.615 0.00 0.00 39.69 3.53
274 275 7.039504 ACAGATAGTTTTGCTGTTGATTTGGAT 60.040 33.333 0.00 0.00 39.69 3.41
275 276 7.487189 CAGATAGTTTTGCTGTTGATTTGGATC 59.513 37.037 0.00 0.00 0.00 3.36
276 277 4.886579 AGTTTTGCTGTTGATTTGGATCC 58.113 39.130 4.20 4.20 0.00 3.36
277 278 3.574284 TTTGCTGTTGATTTGGATCCG 57.426 42.857 7.39 0.00 0.00 4.18
278 279 1.462616 TGCTGTTGATTTGGATCCGG 58.537 50.000 7.39 0.00 0.00 5.14
279 280 0.101219 GCTGTTGATTTGGATCCGGC 59.899 55.000 7.39 0.00 0.00 6.13
280 281 0.740737 CTGTTGATTTGGATCCGGCC 59.259 55.000 7.39 0.00 0.00 6.13
281 282 1.029408 TGTTGATTTGGATCCGGCCG 61.029 55.000 21.04 21.04 0.00 6.13
282 283 0.746563 GTTGATTTGGATCCGGCCGA 60.747 55.000 30.73 13.82 0.00 5.54
283 284 0.463654 TTGATTTGGATCCGGCCGAG 60.464 55.000 30.73 17.53 0.00 4.63
284 285 1.146263 GATTTGGATCCGGCCGAGT 59.854 57.895 30.73 15.27 0.00 4.18
285 286 0.463833 GATTTGGATCCGGCCGAGTT 60.464 55.000 30.73 10.91 0.00 3.01
286 287 0.748005 ATTTGGATCCGGCCGAGTTG 60.748 55.000 30.73 10.28 0.00 3.16
287 288 3.969250 TTGGATCCGGCCGAGTTGC 62.969 63.158 30.73 16.37 0.00 4.17
295 296 4.504132 GCCGAGTTGCCAGAGTAG 57.496 61.111 0.00 0.00 0.00 2.57
296 297 1.811679 GCCGAGTTGCCAGAGTAGC 60.812 63.158 0.00 0.00 0.00 3.58
297 298 1.893786 CCGAGTTGCCAGAGTAGCT 59.106 57.895 0.00 0.00 0.00 3.32
298 299 1.103803 CCGAGTTGCCAGAGTAGCTA 58.896 55.000 0.00 0.00 0.00 3.32
299 300 1.066303 CCGAGTTGCCAGAGTAGCTAG 59.934 57.143 0.00 0.00 0.00 3.42
300 301 1.746220 CGAGTTGCCAGAGTAGCTAGT 59.254 52.381 0.00 0.00 0.00 2.57
301 302 2.478709 CGAGTTGCCAGAGTAGCTAGTG 60.479 54.545 5.62 0.00 0.00 2.74
302 303 2.494073 GAGTTGCCAGAGTAGCTAGTGT 59.506 50.000 5.62 0.00 0.00 3.55
303 304 2.900546 AGTTGCCAGAGTAGCTAGTGTT 59.099 45.455 5.62 0.00 0.00 3.32
304 305 3.325135 AGTTGCCAGAGTAGCTAGTGTTT 59.675 43.478 5.62 0.00 0.00 2.83
305 306 3.594603 TGCCAGAGTAGCTAGTGTTTC 57.405 47.619 5.62 0.00 0.00 2.78
306 307 2.233922 TGCCAGAGTAGCTAGTGTTTCC 59.766 50.000 5.62 0.00 0.00 3.13
307 308 2.735762 GCCAGAGTAGCTAGTGTTTCCG 60.736 54.545 5.62 0.00 0.00 4.30
308 309 2.159226 CCAGAGTAGCTAGTGTTTCCGG 60.159 54.545 5.62 0.00 0.00 5.14
309 310 1.477295 AGAGTAGCTAGTGTTTCCGGC 59.523 52.381 5.62 0.00 0.00 6.13
310 311 0.535797 AGTAGCTAGTGTTTCCGGCC 59.464 55.000 0.00 0.00 0.00 6.13
311 312 0.248289 GTAGCTAGTGTTTCCGGCCA 59.752 55.000 2.24 0.00 0.00 5.36
312 313 0.978151 TAGCTAGTGTTTCCGGCCAA 59.022 50.000 2.24 0.00 0.00 4.52
313 314 0.321653 AGCTAGTGTTTCCGGCCAAG 60.322 55.000 2.24 0.00 0.00 3.61
314 315 1.305930 GCTAGTGTTTCCGGCCAAGG 61.306 60.000 2.24 0.00 0.00 3.61
315 316 1.302993 TAGTGTTTCCGGCCAAGGC 60.303 57.895 2.24 1.52 41.06 4.35
421 425 6.990349 AGTTGAGAGGAAAACGTAATTCTCAA 59.010 34.615 18.66 18.66 44.69 3.02
501 516 1.916000 GCCGTATATGGATAACGTCGC 59.084 52.381 15.58 0.00 0.00 5.19
588 603 3.085533 ACAAAAATGCATGCATGGCAAT 58.914 36.364 32.79 14.89 45.60 3.56
770 826 2.124024 ATGCATGGCGCCATCACT 60.124 55.556 38.60 22.08 41.33 3.41
954 1012 1.602888 CCCATGGCATAGAGCTGGC 60.603 63.158 6.09 0.00 44.79 4.85
962 1020 0.179089 CATAGAGCTGGCTTCGTGCT 60.179 55.000 0.00 0.00 42.39 4.40
1072 1131 1.078497 CATGGCGAAGGTGCAGGTA 60.078 57.895 0.00 0.00 36.28 3.08
1432 1512 5.003778 GCATGCAAATTAAGCTAACGAACAG 59.996 40.000 14.21 0.00 0.00 3.16
1448 1528 2.670934 AGGGCTTGCTGCTGAACG 60.671 61.111 0.00 0.00 42.39 3.95
1451 1531 2.546494 GGCTTGCTGCTGAACGTGT 61.546 57.895 0.00 0.00 42.39 4.49
1452 1532 1.356624 GCTTGCTGCTGAACGTGTT 59.643 52.632 0.00 0.00 38.95 3.32
1453 1533 0.248621 GCTTGCTGCTGAACGTGTTT 60.249 50.000 0.00 0.00 38.95 2.83
1466 1565 1.983605 ACGTGTTTGTTAGCTCGATCG 59.016 47.619 9.36 9.36 0.00 3.69
1473 1572 4.632538 TTGTTAGCTCGATCGATCTCAA 57.367 40.909 23.55 18.74 0.00 3.02
1475 1574 4.540824 TGTTAGCTCGATCGATCTCAATG 58.459 43.478 23.55 9.16 0.00 2.82
1477 1576 2.234143 AGCTCGATCGATCTCAATGGA 58.766 47.619 19.78 10.47 0.00 3.41
1483 1582 1.489481 TCGATCTCAATGGAGTGCCT 58.511 50.000 0.00 0.00 42.05 4.75
1487 1586 2.205022 TCTCAATGGAGTGCCTTTGG 57.795 50.000 0.00 3.15 44.96 3.28
1499 1598 2.622962 CCTTTGGCCCGTTCCGAAC 61.623 63.158 0.00 0.76 0.00 3.95
1507 1606 2.484241 GGCCCGTTCCGAACACTAATAT 60.484 50.000 11.74 0.00 0.00 1.28
1513 1612 6.860023 CCCGTTCCGAACACTAATATTAGTAG 59.140 42.308 24.29 19.94 41.82 2.57
1518 1617 9.903682 TTCCGAACACTAATATTAGTAGTATGC 57.096 33.333 24.29 15.81 41.82 3.14
1519 1618 9.070179 TCCGAACACTAATATTAGTAGTATGCA 57.930 33.333 24.29 6.89 41.82 3.96
1554 1653 2.688958 AGCTAACCTCCGATGTGACTAC 59.311 50.000 0.00 0.00 0.00 2.73
1555 1654 2.541178 GCTAACCTCCGATGTGACTACG 60.541 54.545 0.00 0.00 0.00 3.51
1556 1655 1.830279 AACCTCCGATGTGACTACGA 58.170 50.000 0.00 0.00 0.00 3.43
1563 1662 3.066342 TCCGATGTGACTACGAGGATTTC 59.934 47.826 0.00 0.00 0.00 2.17
1566 1665 3.868757 TGTGACTACGAGGATTTCTGG 57.131 47.619 0.00 0.00 0.00 3.86
1573 1672 1.212616 CGAGGATTTCTGGCGATGTC 58.787 55.000 0.00 0.00 0.00 3.06
1575 1674 0.179073 AGGATTTCTGGCGATGTCCG 60.179 55.000 0.00 0.00 42.21 4.79
1586 1685 2.602878 GCGATGTCCGTTTAGTGAGAA 58.397 47.619 0.00 0.00 41.15 2.87
1587 1686 2.991190 GCGATGTCCGTTTAGTGAGAAA 59.009 45.455 0.00 0.00 41.15 2.52
1592 1691 5.272283 TGTCCGTTTAGTGAGAAAAGACT 57.728 39.130 0.00 0.00 30.56 3.24
1594 1693 6.110707 TGTCCGTTTAGTGAGAAAAGACTTT 58.889 36.000 0.00 0.00 30.56 2.66
1595 1694 6.596497 TGTCCGTTTAGTGAGAAAAGACTTTT 59.404 34.615 12.99 12.99 35.12 2.27
1596 1695 7.120138 TGTCCGTTTAGTGAGAAAAGACTTTTT 59.880 33.333 14.23 5.10 39.16 1.94
1610 1709 8.585189 AAAAGACTTTTTCGTCGACTATAAGT 57.415 30.769 14.70 16.15 38.90 2.24
1633 1732 9.978044 AAGTCGTCTTTAAGTACTCTGTTAAAT 57.022 29.630 0.00 0.00 29.90 1.40
1634 1733 9.623350 AGTCGTCTTTAAGTACTCTGTTAAATC 57.377 33.333 0.00 0.00 29.90 2.17
1635 1734 9.623350 GTCGTCTTTAAGTACTCTGTTAAATCT 57.377 33.333 0.00 0.00 29.90 2.40
1636 1735 9.837525 TCGTCTTTAAGTACTCTGTTAAATCTC 57.162 33.333 0.00 0.00 29.90 2.75
1665 1764 8.687824 AAATATTTTGTTGGCTCAATAACTCG 57.312 30.769 0.00 0.00 0.00 4.18
1675 1774 3.849911 CTCAATAACTCGAAGGTGCTCA 58.150 45.455 0.00 0.00 0.00 4.26
1676 1775 4.437239 CTCAATAACTCGAAGGTGCTCAT 58.563 43.478 0.00 0.00 0.00 2.90
1677 1776 5.592054 CTCAATAACTCGAAGGTGCTCATA 58.408 41.667 0.00 0.00 0.00 2.15
1678 1777 5.592054 TCAATAACTCGAAGGTGCTCATAG 58.408 41.667 0.00 0.00 0.00 2.23
1679 1778 5.359860 TCAATAACTCGAAGGTGCTCATAGA 59.640 40.000 0.00 0.00 0.00 1.98
1680 1779 5.854010 ATAACTCGAAGGTGCTCATAGAA 57.146 39.130 0.00 0.00 0.00 2.10
1681 1780 4.744795 AACTCGAAGGTGCTCATAGAAT 57.255 40.909 0.00 0.00 0.00 2.40
1682 1781 5.854010 AACTCGAAGGTGCTCATAGAATA 57.146 39.130 0.00 0.00 0.00 1.75
1683 1782 5.446143 ACTCGAAGGTGCTCATAGAATAG 57.554 43.478 0.00 0.00 0.00 1.73
1684 1783 4.279671 ACTCGAAGGTGCTCATAGAATAGG 59.720 45.833 0.00 0.00 0.00 2.57
1685 1784 4.470602 TCGAAGGTGCTCATAGAATAGGA 58.529 43.478 0.00 0.00 0.00 2.94
1686 1785 5.080337 TCGAAGGTGCTCATAGAATAGGAT 58.920 41.667 0.00 0.00 27.54 3.24
1687 1786 6.246163 TCGAAGGTGCTCATAGAATAGGATA 58.754 40.000 0.00 0.00 27.54 2.59
1688 1787 6.151312 TCGAAGGTGCTCATAGAATAGGATAC 59.849 42.308 0.00 0.00 27.54 2.24
1707 1806 7.295952 GGATACTCGTGGATGCATTATAAAG 57.704 40.000 0.00 0.00 0.00 1.85
1708 1807 6.313905 GGATACTCGTGGATGCATTATAAAGG 59.686 42.308 0.00 0.00 0.00 3.11
1709 1808 5.036117 ACTCGTGGATGCATTATAAAGGT 57.964 39.130 0.00 0.00 0.00 3.50
1710 1809 4.816385 ACTCGTGGATGCATTATAAAGGTG 59.184 41.667 0.00 0.00 0.00 4.00
1711 1810 5.029807 TCGTGGATGCATTATAAAGGTGA 57.970 39.130 0.00 0.00 0.00 4.02
1712 1811 5.056480 TCGTGGATGCATTATAAAGGTGAG 58.944 41.667 0.00 0.00 0.00 3.51
1713 1812 4.816385 CGTGGATGCATTATAAAGGTGAGT 59.184 41.667 0.00 0.00 0.00 3.41
1714 1813 5.989168 CGTGGATGCATTATAAAGGTGAGTA 59.011 40.000 0.00 0.00 0.00 2.59
1715 1814 6.650807 CGTGGATGCATTATAAAGGTGAGTAT 59.349 38.462 0.00 0.00 0.00 2.12
1716 1815 7.817478 CGTGGATGCATTATAAAGGTGAGTATA 59.183 37.037 0.00 0.00 0.00 1.47
1717 1816 9.672673 GTGGATGCATTATAAAGGTGAGTATAT 57.327 33.333 0.00 0.00 0.00 0.86
1718 1817 9.671279 TGGATGCATTATAAAGGTGAGTATATG 57.329 33.333 0.00 0.00 0.00 1.78
1719 1818 9.672673 GGATGCATTATAAAGGTGAGTATATGT 57.327 33.333 0.00 0.00 0.00 2.29
1721 1820 8.322906 TGCATTATAAAGGTGAGTATATGTGC 57.677 34.615 0.00 0.00 31.49 4.57
1722 1821 7.390440 TGCATTATAAAGGTGAGTATATGTGCC 59.610 37.037 0.00 0.00 30.67 5.01
1723 1822 7.607991 GCATTATAAAGGTGAGTATATGTGCCT 59.392 37.037 0.00 0.00 0.00 4.75
1726 1825 4.585955 AAGGTGAGTATATGTGCCTACG 57.414 45.455 0.00 0.00 0.00 3.51
1727 1826 2.296471 AGGTGAGTATATGTGCCTACGC 59.704 50.000 0.00 0.00 0.00 4.42
1728 1827 2.035449 GGTGAGTATATGTGCCTACGCA 59.965 50.000 0.00 0.00 44.78 5.24
1738 1837 2.900716 TGCCTACGCAAGCATATACA 57.099 45.000 0.00 0.00 43.74 2.29
1739 1838 2.754472 TGCCTACGCAAGCATATACAG 58.246 47.619 0.00 0.00 43.74 2.74
1740 1839 2.102420 TGCCTACGCAAGCATATACAGT 59.898 45.455 0.00 0.00 43.74 3.55
1741 1840 3.131396 GCCTACGCAAGCATATACAGTT 58.869 45.455 0.00 0.00 45.62 3.16
1742 1841 4.202172 TGCCTACGCAAGCATATACAGTTA 60.202 41.667 0.00 0.00 43.74 2.24
1743 1842 4.929808 GCCTACGCAAGCATATACAGTTAT 59.070 41.667 0.00 0.00 45.62 1.89
1744 1843 6.097356 GCCTACGCAAGCATATACAGTTATA 58.903 40.000 0.00 0.00 45.62 0.98
1745 1844 6.757010 GCCTACGCAAGCATATACAGTTATAT 59.243 38.462 0.00 0.00 45.62 0.86
1746 1845 7.277981 GCCTACGCAAGCATATACAGTTATATT 59.722 37.037 0.00 0.00 45.62 1.28
1747 1846 8.595533 CCTACGCAAGCATATACAGTTATATTG 58.404 37.037 0.00 0.00 45.62 1.90
1748 1847 7.962964 ACGCAAGCATATACAGTTATATTGT 57.037 32.000 0.00 0.00 45.62 2.71
1750 1849 9.653287 ACGCAAGCATATACAGTTATATTGTAT 57.347 29.630 12.43 12.43 41.94 2.29
1855 1954 8.740123 TGAGTATCACACCTTAAAAAGAACAA 57.260 30.769 0.00 0.00 42.56 2.83
1856 1955 9.179909 TGAGTATCACACCTTAAAAAGAACAAA 57.820 29.630 0.00 0.00 42.56 2.83
1859 1958 9.244799 GTATCACACCTTAAAAAGAACAAAAGG 57.755 33.333 0.00 0.00 42.01 3.11
1861 1960 7.317390 TCACACCTTAAAAAGAACAAAAGGTC 58.683 34.615 2.16 0.00 45.20 3.85
1862 1961 6.252655 CACACCTTAAAAAGAACAAAAGGTCG 59.747 38.462 2.16 2.39 45.20 4.79
1863 1962 6.071784 ACACCTTAAAAAGAACAAAAGGTCGT 60.072 34.615 2.16 2.92 45.20 4.34
1864 1963 6.471198 CACCTTAAAAAGAACAAAAGGTCGTC 59.529 38.462 2.16 0.00 45.20 4.20
1865 1964 5.975344 CCTTAAAAAGAACAAAAGGTCGTCC 59.025 40.000 0.00 0.00 33.50 4.79
1866 1965 8.500290 ACCTTAAAAAGAACAAAAGGTCGTCCT 61.500 37.037 0.00 0.00 45.20 3.85
1867 1966 4.895224 AAAAGAACAAAAGGTCGTCCTC 57.105 40.909 0.46 0.00 44.35 3.71
1868 1967 3.553828 AAGAACAAAAGGTCGTCCTCA 57.446 42.857 0.46 0.00 44.35 3.86
1869 1968 3.771577 AGAACAAAAGGTCGTCCTCAT 57.228 42.857 0.46 0.00 44.35 2.90
1870 1969 3.665190 AGAACAAAAGGTCGTCCTCATC 58.335 45.455 0.46 0.00 44.35 2.92
1871 1970 3.071023 AGAACAAAAGGTCGTCCTCATCA 59.929 43.478 0.46 0.00 44.35 3.07
1872 1971 3.703001 ACAAAAGGTCGTCCTCATCAT 57.297 42.857 0.46 0.00 44.35 2.45
1873 1972 4.021102 ACAAAAGGTCGTCCTCATCATT 57.979 40.909 0.46 0.00 44.35 2.57
1874 1973 4.003648 ACAAAAGGTCGTCCTCATCATTC 58.996 43.478 0.46 0.00 44.35 2.67
1875 1974 2.586258 AAGGTCGTCCTCATCATTCG 57.414 50.000 0.46 0.00 44.35 3.34
1876 1975 1.475403 AGGTCGTCCTCATCATTCGT 58.525 50.000 0.00 0.00 40.58 3.85
1877 1976 1.825474 AGGTCGTCCTCATCATTCGTT 59.175 47.619 0.00 0.00 40.58 3.85
1878 1977 2.159226 AGGTCGTCCTCATCATTCGTTC 60.159 50.000 0.00 0.00 40.58 3.95
1879 1978 2.416836 GGTCGTCCTCATCATTCGTTCA 60.417 50.000 0.00 0.00 0.00 3.18
1880 1979 3.250744 GTCGTCCTCATCATTCGTTCAA 58.749 45.455 0.00 0.00 0.00 2.69
1881 1980 3.060895 GTCGTCCTCATCATTCGTTCAAC 59.939 47.826 0.00 0.00 0.00 3.18
1882 1981 3.056821 TCGTCCTCATCATTCGTTCAACT 60.057 43.478 0.00 0.00 0.00 3.16
1883 1982 3.679980 CGTCCTCATCATTCGTTCAACTT 59.320 43.478 0.00 0.00 0.00 2.66
1884 1983 4.152402 CGTCCTCATCATTCGTTCAACTTT 59.848 41.667 0.00 0.00 0.00 2.66
1885 1984 5.347635 CGTCCTCATCATTCGTTCAACTTTA 59.652 40.000 0.00 0.00 0.00 1.85
1886 1985 6.534934 GTCCTCATCATTCGTTCAACTTTAC 58.465 40.000 0.00 0.00 0.00 2.01
1887 1986 6.369065 GTCCTCATCATTCGTTCAACTTTACT 59.631 38.462 0.00 0.00 0.00 2.24
1888 1987 6.934645 TCCTCATCATTCGTTCAACTTTACTT 59.065 34.615 0.00 0.00 0.00 2.24
1889 1988 8.092068 TCCTCATCATTCGTTCAACTTTACTTA 58.908 33.333 0.00 0.00 0.00 2.24
1890 1989 8.169268 CCTCATCATTCGTTCAACTTTACTTAC 58.831 37.037 0.00 0.00 0.00 2.34
1891 1990 8.827177 TCATCATTCGTTCAACTTTACTTACT 57.173 30.769 0.00 0.00 0.00 2.24
1892 1991 9.268268 TCATCATTCGTTCAACTTTACTTACTT 57.732 29.630 0.00 0.00 0.00 2.24
1893 1992 9.878599 CATCATTCGTTCAACTTTACTTACTTT 57.121 29.630 0.00 0.00 0.00 2.66
1928 2027 9.739786 CTTTTTATCGTTAATTTTTGTCATGCC 57.260 29.630 0.00 0.00 0.00 4.40
1929 2028 7.820044 TTTATCGTTAATTTTTGTCATGCCC 57.180 32.000 0.00 0.00 0.00 5.36
1930 2029 5.659440 ATCGTTAATTTTTGTCATGCCCT 57.341 34.783 0.00 0.00 0.00 5.19
1931 2030 6.767524 ATCGTTAATTTTTGTCATGCCCTA 57.232 33.333 0.00 0.00 0.00 3.53
1932 2031 6.576662 TCGTTAATTTTTGTCATGCCCTAA 57.423 33.333 0.00 0.00 0.00 2.69
1933 2032 7.164230 TCGTTAATTTTTGTCATGCCCTAAT 57.836 32.000 0.00 0.00 0.00 1.73
1934 2033 7.607250 TCGTTAATTTTTGTCATGCCCTAATT 58.393 30.769 0.00 0.00 0.00 1.40
1935 2034 8.091449 TCGTTAATTTTTGTCATGCCCTAATTT 58.909 29.630 0.00 0.00 0.00 1.82
1936 2035 8.716909 CGTTAATTTTTGTCATGCCCTAATTTT 58.283 29.630 0.00 0.00 0.00 1.82
1939 2038 8.922931 AATTTTTGTCATGCCCTAATTTTCTT 57.077 26.923 0.00 0.00 0.00 2.52
1940 2039 7.961325 TTTTTGTCATGCCCTAATTTTCTTC 57.039 32.000 0.00 0.00 0.00 2.87
1941 2040 6.662865 TTTGTCATGCCCTAATTTTCTTCA 57.337 33.333 0.00 0.00 0.00 3.02
1942 2041 6.855763 TTGTCATGCCCTAATTTTCTTCAT 57.144 33.333 0.00 0.00 0.00 2.57
1943 2042 7.953005 TTGTCATGCCCTAATTTTCTTCATA 57.047 32.000 0.00 0.00 0.00 2.15
1944 2043 7.572523 TGTCATGCCCTAATTTTCTTCATAG 57.427 36.000 0.00 0.00 0.00 2.23
1945 2044 7.345691 TGTCATGCCCTAATTTTCTTCATAGA 58.654 34.615 0.00 0.00 0.00 1.98
1946 2045 8.000709 TGTCATGCCCTAATTTTCTTCATAGAT 58.999 33.333 0.00 0.00 0.00 1.98
1947 2046 8.854117 GTCATGCCCTAATTTTCTTCATAGATT 58.146 33.333 0.00 0.00 0.00 2.40
1948 2047 9.425248 TCATGCCCTAATTTTCTTCATAGATTT 57.575 29.630 0.00 0.00 0.00 2.17
1951 2050 9.874205 TGCCCTAATTTTCTTCATAGATTTTTG 57.126 29.630 0.00 0.00 0.00 2.44
1961 2060 6.704050 TCTTCATAGATTTTTGACACGTGTGA 59.296 34.615 28.82 16.64 0.00 3.58
2025 2124 2.436646 CGGCCCACACAGGTCATC 60.437 66.667 0.00 0.00 34.66 2.92
2051 2150 3.572255 GGGCGAATATTAGAATTGCCCAA 59.428 43.478 15.80 0.00 44.30 4.12
2097 2196 3.064207 CCACACGCATAACAAGTACTGT 58.936 45.455 0.00 0.00 41.27 3.55
2114 2214 4.337177 TTCATTCCACCCCGCGCA 62.337 61.111 8.75 0.00 0.00 6.09
2141 2241 1.137872 ACGAAGCAAAAATGCCCACAA 59.862 42.857 0.00 0.00 34.90 3.33
2145 2245 1.761784 AGCAAAAATGCCCACAAGTCA 59.238 42.857 0.00 0.00 34.90 3.41
2188 2290 2.546778 CGCGGGATAAGCTTTAGTTGA 58.453 47.619 3.20 0.00 0.00 3.18
2217 2319 5.163561 CGGGATGGCAAATGTAGTTGTAAAT 60.164 40.000 0.00 0.00 0.00 1.40
2279 2382 9.162764 GTCATGTCTAATTTATGGTAGTTGTGT 57.837 33.333 0.00 0.00 0.00 3.72
2280 2383 9.161629 TCATGTCTAATTTATGGTAGTTGTGTG 57.838 33.333 0.00 0.00 0.00 3.82
2281 2384 8.946085 CATGTCTAATTTATGGTAGTTGTGTGT 58.054 33.333 0.00 0.00 0.00 3.72
2282 2385 8.542497 TGTCTAATTTATGGTAGTTGTGTGTC 57.458 34.615 0.00 0.00 0.00 3.67
2283 2386 8.372459 TGTCTAATTTATGGTAGTTGTGTGTCT 58.628 33.333 0.00 0.00 0.00 3.41
2284 2387 9.865321 GTCTAATTTATGGTAGTTGTGTGTCTA 57.135 33.333 0.00 0.00 0.00 2.59
2293 2396 9.905713 ATGGTAGTTGTGTGTCTAATTTATGAT 57.094 29.630 0.00 0.00 0.00 2.45
2294 2397 9.733556 TGGTAGTTGTGTGTCTAATTTATGATT 57.266 29.630 0.00 0.00 0.00 2.57
2301 2404 9.671279 TGTGTGTCTAATTTATGATTCATGTCT 57.329 29.630 9.46 0.00 0.00 3.41
2324 2427 0.452987 ATAGTTGCCATGCGTGCTTG 59.547 50.000 0.00 1.05 0.00 4.01
2342 2528 3.544684 CTTGCCTAGTTGCCATGTATGA 58.455 45.455 0.00 0.00 0.00 2.15
2347 2533 5.530915 TGCCTAGTTGCCATGTATGATTAAC 59.469 40.000 0.00 0.00 0.00 2.01
2479 2733 1.596260 CTGCAGTTGCCATCTATCACG 59.404 52.381 5.25 0.00 41.18 4.35
2515 2769 4.069232 TGAAGAGGCGCTCACCCG 62.069 66.667 7.64 0.00 32.06 5.28
2534 2788 2.279650 ACGCGCGTGTACTGGTTT 60.280 55.556 37.37 5.31 0.00 3.27
2546 2800 2.779755 ACTGGTTTGTGACTGTGTGA 57.220 45.000 0.00 0.00 0.00 3.58
2552 2806 0.541392 TTGTGACTGTGTGAGCAGGT 59.459 50.000 0.00 0.00 40.59 4.00
2563 2817 2.995574 AGCAGGTACCGGTTCGCT 60.996 61.111 15.04 13.30 0.00 4.93
2670 2934 4.819088 GCACTCAGATTCCTTTAGGATTCC 59.181 45.833 14.15 0.00 44.98 3.01
2678 2942 6.899631 AGATTCCTTTAGGATTCCTGCAAAAT 59.100 34.615 15.80 8.32 44.98 1.82
2700 2964 3.903467 AGAATTAAGGTGGATCAAGGCC 58.097 45.455 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.396418 AGTGATTCCCAACAAATATTTGCATT 58.604 30.769 24.82 12.12 41.79 3.56
1 2 6.949715 AGTGATTCCCAACAAATATTTGCAT 58.050 32.000 24.82 13.38 41.79 3.96
2 3 6.357579 AGTGATTCCCAACAAATATTTGCA 57.642 33.333 24.82 11.33 41.79 4.08
3 4 8.250332 TCTTAGTGATTCCCAACAAATATTTGC 58.750 33.333 24.82 9.11 41.79 3.68
6 7 8.971073 CCTTCTTAGTGATTCCCAACAAATATT 58.029 33.333 0.00 0.00 0.00 1.28
7 8 8.336235 TCCTTCTTAGTGATTCCCAACAAATAT 58.664 33.333 0.00 0.00 0.00 1.28
8 9 7.695055 TCCTTCTTAGTGATTCCCAACAAATA 58.305 34.615 0.00 0.00 0.00 1.40
9 10 6.552008 TCCTTCTTAGTGATTCCCAACAAAT 58.448 36.000 0.00 0.00 0.00 2.32
10 11 5.947663 TCCTTCTTAGTGATTCCCAACAAA 58.052 37.500 0.00 0.00 0.00 2.83
11 12 5.576563 TCCTTCTTAGTGATTCCCAACAA 57.423 39.130 0.00 0.00 0.00 2.83
12 13 5.313712 GTTCCTTCTTAGTGATTCCCAACA 58.686 41.667 0.00 0.00 0.00 3.33
13 14 4.392138 CGTTCCTTCTTAGTGATTCCCAAC 59.608 45.833 0.00 0.00 0.00 3.77
14 15 4.285003 TCGTTCCTTCTTAGTGATTCCCAA 59.715 41.667 0.00 0.00 0.00 4.12
15 16 3.835978 TCGTTCCTTCTTAGTGATTCCCA 59.164 43.478 0.00 0.00 0.00 4.37
16 17 4.182339 GTCGTTCCTTCTTAGTGATTCCC 58.818 47.826 0.00 0.00 0.00 3.97
17 18 4.817517 TGTCGTTCCTTCTTAGTGATTCC 58.182 43.478 0.00 0.00 0.00 3.01
18 19 5.694910 TGTTGTCGTTCCTTCTTAGTGATTC 59.305 40.000 0.00 0.00 0.00 2.52
19 20 5.607477 TGTTGTCGTTCCTTCTTAGTGATT 58.393 37.500 0.00 0.00 0.00 2.57
20 21 5.209818 TGTTGTCGTTCCTTCTTAGTGAT 57.790 39.130 0.00 0.00 0.00 3.06
21 22 4.659111 TGTTGTCGTTCCTTCTTAGTGA 57.341 40.909 0.00 0.00 0.00 3.41
22 23 5.277345 CCTTTGTTGTCGTTCCTTCTTAGTG 60.277 44.000 0.00 0.00 0.00 2.74
23 24 4.814771 CCTTTGTTGTCGTTCCTTCTTAGT 59.185 41.667 0.00 0.00 0.00 2.24
24 25 4.319549 GCCTTTGTTGTCGTTCCTTCTTAG 60.320 45.833 0.00 0.00 0.00 2.18
25 26 3.562557 GCCTTTGTTGTCGTTCCTTCTTA 59.437 43.478 0.00 0.00 0.00 2.10
26 27 2.357952 GCCTTTGTTGTCGTTCCTTCTT 59.642 45.455 0.00 0.00 0.00 2.52
27 28 1.947456 GCCTTTGTTGTCGTTCCTTCT 59.053 47.619 0.00 0.00 0.00 2.85
28 29 1.333791 CGCCTTTGTTGTCGTTCCTTC 60.334 52.381 0.00 0.00 0.00 3.46
29 30 0.661020 CGCCTTTGTTGTCGTTCCTT 59.339 50.000 0.00 0.00 0.00 3.36
30 31 0.463116 ACGCCTTTGTTGTCGTTCCT 60.463 50.000 0.00 0.00 0.00 3.36
31 32 1.219646 TACGCCTTTGTTGTCGTTCC 58.780 50.000 0.00 0.00 36.50 3.62
32 33 3.322230 TTTACGCCTTTGTTGTCGTTC 57.678 42.857 0.00 0.00 36.50 3.95
33 34 3.761311 TTTTACGCCTTTGTTGTCGTT 57.239 38.095 0.00 0.00 36.50 3.85
34 35 3.374678 TCTTTTTACGCCTTTGTTGTCGT 59.625 39.130 0.00 0.00 38.75 4.34
35 36 3.942739 TCTTTTTACGCCTTTGTTGTCG 58.057 40.909 0.00 0.00 0.00 4.35
36 37 5.567915 GCTATCTTTTTACGCCTTTGTTGTC 59.432 40.000 0.00 0.00 0.00 3.18
37 38 5.458015 GCTATCTTTTTACGCCTTTGTTGT 58.542 37.500 0.00 0.00 0.00 3.32
38 39 4.553429 CGCTATCTTTTTACGCCTTTGTTG 59.447 41.667 0.00 0.00 0.00 3.33
39 40 4.379082 CCGCTATCTTTTTACGCCTTTGTT 60.379 41.667 0.00 0.00 0.00 2.83
40 41 3.126343 CCGCTATCTTTTTACGCCTTTGT 59.874 43.478 0.00 0.00 0.00 2.83
41 42 3.680789 CCGCTATCTTTTTACGCCTTTG 58.319 45.455 0.00 0.00 0.00 2.77
42 43 2.096980 GCCGCTATCTTTTTACGCCTTT 59.903 45.455 0.00 0.00 0.00 3.11
43 44 1.669265 GCCGCTATCTTTTTACGCCTT 59.331 47.619 0.00 0.00 0.00 4.35
44 45 1.296727 GCCGCTATCTTTTTACGCCT 58.703 50.000 0.00 0.00 0.00 5.52
45 46 1.011333 TGCCGCTATCTTTTTACGCC 58.989 50.000 0.00 0.00 0.00 5.68
46 47 2.095372 AGTTGCCGCTATCTTTTTACGC 59.905 45.455 0.00 0.00 0.00 4.42
47 48 4.025979 CCTAGTTGCCGCTATCTTTTTACG 60.026 45.833 0.00 0.00 0.00 3.18
48 49 4.874396 ACCTAGTTGCCGCTATCTTTTTAC 59.126 41.667 0.00 0.00 0.00 2.01
49 50 5.093849 ACCTAGTTGCCGCTATCTTTTTA 57.906 39.130 0.00 0.00 0.00 1.52
50 51 3.951663 ACCTAGTTGCCGCTATCTTTTT 58.048 40.909 0.00 0.00 0.00 1.94
51 52 3.629142 ACCTAGTTGCCGCTATCTTTT 57.371 42.857 0.00 0.00 0.00 2.27
52 53 3.958798 TCTACCTAGTTGCCGCTATCTTT 59.041 43.478 0.00 0.00 0.00 2.52
53 54 3.563223 TCTACCTAGTTGCCGCTATCTT 58.437 45.455 0.00 0.00 0.00 2.40
54 55 3.225177 TCTACCTAGTTGCCGCTATCT 57.775 47.619 0.00 0.00 0.00 1.98
55 56 5.838531 ATATCTACCTAGTTGCCGCTATC 57.161 43.478 0.00 0.00 0.00 2.08
56 57 6.607004 AAATATCTACCTAGTTGCCGCTAT 57.393 37.500 0.00 0.00 0.00 2.97
57 58 6.220930 CAAAATATCTACCTAGTTGCCGCTA 58.779 40.000 0.00 0.00 0.00 4.26
58 59 4.957684 AAATATCTACCTAGTTGCCGCT 57.042 40.909 0.00 0.00 0.00 5.52
59 60 4.213482 CCAAAATATCTACCTAGTTGCCGC 59.787 45.833 0.00 0.00 0.00 6.53
60 61 5.365619 ACCAAAATATCTACCTAGTTGCCG 58.634 41.667 0.00 0.00 0.00 5.69
61 62 7.506971 ACTACCAAAATATCTACCTAGTTGCC 58.493 38.462 0.00 0.00 0.00 4.52
62 63 8.422566 AGACTACCAAAATATCTACCTAGTTGC 58.577 37.037 0.00 0.00 0.00 4.17
72 73 9.326413 CCGATTTGTTAGACTACCAAAATATCT 57.674 33.333 8.99 0.00 32.39 1.98
73 74 8.557029 CCCGATTTGTTAGACTACCAAAATATC 58.443 37.037 8.99 2.84 32.39 1.63
74 75 8.269317 TCCCGATTTGTTAGACTACCAAAATAT 58.731 33.333 8.99 0.00 32.39 1.28
75 76 7.622713 TCCCGATTTGTTAGACTACCAAAATA 58.377 34.615 8.99 0.00 32.39 1.40
76 77 6.478129 TCCCGATTTGTTAGACTACCAAAAT 58.522 36.000 8.99 3.35 32.39 1.82
77 78 5.867330 TCCCGATTTGTTAGACTACCAAAA 58.133 37.500 8.99 0.00 32.39 2.44
78 79 5.486735 TCCCGATTTGTTAGACTACCAAA 57.513 39.130 7.55 7.55 33.09 3.28
79 80 5.221682 TGTTCCCGATTTGTTAGACTACCAA 60.222 40.000 0.00 0.00 0.00 3.67
80 81 4.283978 TGTTCCCGATTTGTTAGACTACCA 59.716 41.667 0.00 0.00 0.00 3.25
81 82 4.628766 GTGTTCCCGATTTGTTAGACTACC 59.371 45.833 0.00 0.00 0.00 3.18
82 83 4.628766 GGTGTTCCCGATTTGTTAGACTAC 59.371 45.833 0.00 0.00 0.00 2.73
83 84 4.529377 AGGTGTTCCCGATTTGTTAGACTA 59.471 41.667 0.00 0.00 38.74 2.59
84 85 3.326880 AGGTGTTCCCGATTTGTTAGACT 59.673 43.478 0.00 0.00 38.74 3.24
85 86 3.671716 AGGTGTTCCCGATTTGTTAGAC 58.328 45.455 0.00 0.00 38.74 2.59
86 87 4.069304 CAAGGTGTTCCCGATTTGTTAGA 58.931 43.478 0.00 0.00 38.74 2.10
87 88 4.069304 TCAAGGTGTTCCCGATTTGTTAG 58.931 43.478 0.00 0.00 38.74 2.34
88 89 3.816523 GTCAAGGTGTTCCCGATTTGTTA 59.183 43.478 0.00 0.00 38.74 2.41
89 90 2.621526 GTCAAGGTGTTCCCGATTTGTT 59.378 45.455 0.00 0.00 38.74 2.83
90 91 2.158667 AGTCAAGGTGTTCCCGATTTGT 60.159 45.455 0.00 0.00 38.74 2.83
91 92 2.504367 AGTCAAGGTGTTCCCGATTTG 58.496 47.619 0.00 0.00 38.74 2.32
92 93 2.951229 AGTCAAGGTGTTCCCGATTT 57.049 45.000 0.00 0.00 38.74 2.17
93 94 2.635915 TGTAGTCAAGGTGTTCCCGATT 59.364 45.455 0.00 0.00 38.74 3.34
94 95 2.028385 GTGTAGTCAAGGTGTTCCCGAT 60.028 50.000 0.00 0.00 38.74 4.18
95 96 1.342174 GTGTAGTCAAGGTGTTCCCGA 59.658 52.381 0.00 0.00 38.74 5.14
96 97 1.343465 AGTGTAGTCAAGGTGTTCCCG 59.657 52.381 0.00 0.00 38.74 5.14
97 98 4.612264 TTAGTGTAGTCAAGGTGTTCCC 57.388 45.455 0.00 0.00 0.00 3.97
98 99 6.930667 TTTTTAGTGTAGTCAAGGTGTTCC 57.069 37.500 0.00 0.00 0.00 3.62
99 100 8.149973 TGATTTTTAGTGTAGTCAAGGTGTTC 57.850 34.615 0.00 0.00 0.00 3.18
100 101 8.691661 ATGATTTTTAGTGTAGTCAAGGTGTT 57.308 30.769 0.00 0.00 0.00 3.32
101 102 8.691661 AATGATTTTTAGTGTAGTCAAGGTGT 57.308 30.769 0.00 0.00 0.00 4.16
103 104 8.932791 CGTAATGATTTTTAGTGTAGTCAAGGT 58.067 33.333 0.00 0.00 0.00 3.50
104 105 7.903431 GCGTAATGATTTTTAGTGTAGTCAAGG 59.097 37.037 0.00 0.00 0.00 3.61
105 106 7.903431 GGCGTAATGATTTTTAGTGTAGTCAAG 59.097 37.037 0.00 0.00 0.00 3.02
106 107 7.604927 AGGCGTAATGATTTTTAGTGTAGTCAA 59.395 33.333 0.00 0.00 0.00 3.18
107 108 7.101054 AGGCGTAATGATTTTTAGTGTAGTCA 58.899 34.615 0.00 0.00 0.00 3.41
108 109 7.535489 AGGCGTAATGATTTTTAGTGTAGTC 57.465 36.000 0.00 0.00 0.00 2.59
109 110 7.389607 ACAAGGCGTAATGATTTTTAGTGTAGT 59.610 33.333 0.00 0.00 0.00 2.73
110 111 7.748847 ACAAGGCGTAATGATTTTTAGTGTAG 58.251 34.615 0.00 0.00 0.00 2.74
111 112 7.412129 CGACAAGGCGTAATGATTTTTAGTGTA 60.412 37.037 0.00 0.00 0.00 2.90
112 113 6.569179 ACAAGGCGTAATGATTTTTAGTGT 57.431 33.333 0.00 0.00 0.00 3.55
113 114 5.732647 CGACAAGGCGTAATGATTTTTAGTG 59.267 40.000 0.00 0.00 0.00 2.74
114 115 5.410439 ACGACAAGGCGTAATGATTTTTAGT 59.590 36.000 0.00 0.00 43.61 2.24
115 116 5.732647 CACGACAAGGCGTAATGATTTTTAG 59.267 40.000 0.00 0.00 43.59 1.85
116 117 5.623335 CACGACAAGGCGTAATGATTTTTA 58.377 37.500 0.00 0.00 43.59 1.52
117 118 4.472286 CACGACAAGGCGTAATGATTTTT 58.528 39.130 0.00 0.00 43.59 1.94
118 119 3.669557 GCACGACAAGGCGTAATGATTTT 60.670 43.478 0.00 0.00 43.59 1.82
119 120 2.159572 GCACGACAAGGCGTAATGATTT 60.160 45.455 0.00 0.00 43.59 2.17
120 121 1.396996 GCACGACAAGGCGTAATGATT 59.603 47.619 0.00 0.00 43.59 2.57
121 122 1.006832 GCACGACAAGGCGTAATGAT 58.993 50.000 0.00 0.00 43.59 2.45
122 123 0.319986 TGCACGACAAGGCGTAATGA 60.320 50.000 0.00 0.00 43.59 2.57
123 124 0.095245 CTGCACGACAAGGCGTAATG 59.905 55.000 0.00 0.00 43.59 1.90
124 125 1.635663 GCTGCACGACAAGGCGTAAT 61.636 55.000 0.00 0.00 43.59 1.89
125 126 2.314647 GCTGCACGACAAGGCGTAA 61.315 57.895 0.00 0.00 43.59 3.18
126 127 2.736995 GCTGCACGACAAGGCGTA 60.737 61.111 0.00 0.00 43.59 4.42
127 128 4.908687 TGCTGCACGACAAGGCGT 62.909 61.111 0.00 0.00 46.88 5.68
128 129 3.372676 GATGCTGCACGACAAGGCG 62.373 63.158 3.57 0.00 37.29 5.52
129 130 2.482374 GATGCTGCACGACAAGGC 59.518 61.111 3.57 0.00 0.00 4.35
130 131 2.029288 ACGATGCTGCACGACAAGG 61.029 57.895 23.94 5.55 0.00 3.61
131 132 1.131218 CACGATGCTGCACGACAAG 59.869 57.895 23.94 8.39 0.00 3.16
132 133 0.878086 TTCACGATGCTGCACGACAA 60.878 50.000 23.94 15.28 0.00 3.18
133 134 0.878086 TTTCACGATGCTGCACGACA 60.878 50.000 23.94 11.54 0.00 4.35
134 135 0.179240 CTTTCACGATGCTGCACGAC 60.179 55.000 23.94 11.07 0.00 4.34
135 136 1.900585 GCTTTCACGATGCTGCACGA 61.901 55.000 23.94 9.46 0.00 4.35
136 137 1.510623 GCTTTCACGATGCTGCACG 60.511 57.895 18.29 18.29 0.00 5.34
137 138 0.239347 AAGCTTTCACGATGCTGCAC 59.761 50.000 3.57 0.00 38.62 4.57
138 139 0.953727 AAAGCTTTCACGATGCTGCA 59.046 45.000 5.69 4.13 38.62 4.41
139 140 1.069022 TGAAAGCTTTCACGATGCTGC 60.069 47.619 32.86 8.78 41.88 5.25
140 141 2.975410 TGAAAGCTTTCACGATGCTG 57.025 45.000 32.86 0.00 41.88 4.41
141 142 3.565482 TCTTTGAAAGCTTTCACGATGCT 59.435 39.130 35.54 0.77 45.99 3.79
142 143 3.888934 TCTTTGAAAGCTTTCACGATGC 58.111 40.909 35.54 12.47 45.99 3.91
143 144 6.998258 AATTCTTTGAAAGCTTTCACGATG 57.002 33.333 35.54 24.35 45.99 3.84
144 145 9.696917 AATAAATTCTTTGAAAGCTTTCACGAT 57.303 25.926 35.54 23.75 45.99 3.73
145 146 8.967218 CAATAAATTCTTTGAAAGCTTTCACGA 58.033 29.630 35.54 29.71 45.99 4.35
146 147 8.967218 TCAATAAATTCTTTGAAAGCTTTCACG 58.033 29.630 35.54 28.27 45.99 4.35
151 152 9.132521 CGACATCAATAAATTCTTTGAAAGCTT 57.867 29.630 0.00 0.00 35.63 3.74
152 153 8.299570 ACGACATCAATAAATTCTTTGAAAGCT 58.700 29.630 0.00 0.00 35.63 3.74
153 154 8.452989 ACGACATCAATAAATTCTTTGAAAGC 57.547 30.769 0.00 0.00 35.63 3.51
154 155 8.779561 CGACGACATCAATAAATTCTTTGAAAG 58.220 33.333 0.00 0.00 35.63 2.62
155 156 7.748683 CCGACGACATCAATAAATTCTTTGAAA 59.251 33.333 0.00 0.00 35.63 2.69
156 157 7.118535 TCCGACGACATCAATAAATTCTTTGAA 59.881 33.333 0.00 0.00 35.63 2.69
157 158 6.592220 TCCGACGACATCAATAAATTCTTTGA 59.408 34.615 0.00 5.72 36.38 2.69
158 159 6.771076 TCCGACGACATCAATAAATTCTTTG 58.229 36.000 0.00 0.00 0.00 2.77
159 160 6.978343 TCCGACGACATCAATAAATTCTTT 57.022 33.333 0.00 0.00 0.00 2.52
160 161 6.538742 ACATCCGACGACATCAATAAATTCTT 59.461 34.615 0.00 0.00 0.00 2.52
161 162 6.018751 CACATCCGACGACATCAATAAATTCT 60.019 38.462 0.00 0.00 0.00 2.40
162 163 6.129393 CACATCCGACGACATCAATAAATTC 58.871 40.000 0.00 0.00 0.00 2.17
163 164 5.584649 ACACATCCGACGACATCAATAAATT 59.415 36.000 0.00 0.00 0.00 1.82
164 165 5.116180 ACACATCCGACGACATCAATAAAT 58.884 37.500 0.00 0.00 0.00 1.40
165 166 4.500127 ACACATCCGACGACATCAATAAA 58.500 39.130 0.00 0.00 0.00 1.40
166 167 4.118093 ACACATCCGACGACATCAATAA 57.882 40.909 0.00 0.00 0.00 1.40
167 168 3.793797 ACACATCCGACGACATCAATA 57.206 42.857 0.00 0.00 0.00 1.90
168 169 2.672961 ACACATCCGACGACATCAAT 57.327 45.000 0.00 0.00 0.00 2.57
169 170 3.129638 TCATACACATCCGACGACATCAA 59.870 43.478 0.00 0.00 0.00 2.57
170 171 2.685897 TCATACACATCCGACGACATCA 59.314 45.455 0.00 0.00 0.00 3.07
171 172 3.300857 CTCATACACATCCGACGACATC 58.699 50.000 0.00 0.00 0.00 3.06
172 173 2.034685 CCTCATACACATCCGACGACAT 59.965 50.000 0.00 0.00 0.00 3.06
173 174 1.404035 CCTCATACACATCCGACGACA 59.596 52.381 0.00 0.00 0.00 4.35
174 175 1.269102 CCCTCATACACATCCGACGAC 60.269 57.143 0.00 0.00 0.00 4.34
175 176 1.029681 CCCTCATACACATCCGACGA 58.970 55.000 0.00 0.00 0.00 4.20
176 177 1.029681 TCCCTCATACACATCCGACG 58.970 55.000 0.00 0.00 0.00 5.12
177 178 2.628178 TGATCCCTCATACACATCCGAC 59.372 50.000 0.00 0.00 0.00 4.79
178 179 2.957474 TGATCCCTCATACACATCCGA 58.043 47.619 0.00 0.00 0.00 4.55
179 180 3.969287 ATGATCCCTCATACACATCCG 57.031 47.619 0.00 0.00 40.39 4.18
180 181 6.966534 AAAAATGATCCCTCATACACATCC 57.033 37.500 0.00 0.00 41.34 3.51
203 204 3.058450 TCCGTGCGTTAATCGAGAAAAA 58.942 40.909 0.00 0.00 42.86 1.94
204 205 2.409378 GTCCGTGCGTTAATCGAGAAAA 59.591 45.455 0.00 0.00 42.86 2.29
205 206 1.987770 GTCCGTGCGTTAATCGAGAAA 59.012 47.619 0.00 0.00 42.86 2.52
206 207 1.068402 TGTCCGTGCGTTAATCGAGAA 60.068 47.619 0.00 0.00 42.86 2.87
207 208 0.522626 TGTCCGTGCGTTAATCGAGA 59.477 50.000 0.00 0.00 42.86 4.04
208 209 1.255342 CATGTCCGTGCGTTAATCGAG 59.745 52.381 0.00 0.00 42.86 4.04
209 210 1.273688 CATGTCCGTGCGTTAATCGA 58.726 50.000 0.00 0.00 42.86 3.59
210 211 0.996462 ACATGTCCGTGCGTTAATCG 59.004 50.000 0.00 0.00 43.12 3.34
211 212 3.160545 CAAACATGTCCGTGCGTTAATC 58.839 45.455 0.00 0.00 0.00 1.75
212 213 2.667171 GCAAACATGTCCGTGCGTTAAT 60.667 45.455 11.86 0.00 0.00 1.40
213 214 1.334239 GCAAACATGTCCGTGCGTTAA 60.334 47.619 11.86 0.00 0.00 2.01
214 215 0.236187 GCAAACATGTCCGTGCGTTA 59.764 50.000 11.86 0.00 0.00 3.18
215 216 1.008995 GCAAACATGTCCGTGCGTT 60.009 52.632 11.86 0.00 0.00 4.84
216 217 0.601576 TAGCAAACATGTCCGTGCGT 60.602 50.000 18.16 11.87 41.90 5.24
217 218 0.095245 CTAGCAAACATGTCCGTGCG 59.905 55.000 18.16 6.56 41.90 5.34
218 219 1.128692 GACTAGCAAACATGTCCGTGC 59.871 52.381 17.10 17.10 37.26 5.34
219 220 1.390123 CGACTAGCAAACATGTCCGTG 59.610 52.381 0.00 0.00 0.00 4.94
220 221 1.271379 TCGACTAGCAAACATGTCCGT 59.729 47.619 0.00 0.00 0.00 4.69
221 222 1.990799 TCGACTAGCAAACATGTCCG 58.009 50.000 0.00 0.00 0.00 4.79
222 223 3.932710 TCATTCGACTAGCAAACATGTCC 59.067 43.478 0.00 0.00 0.00 4.02
223 224 5.530519 TTCATTCGACTAGCAAACATGTC 57.469 39.130 0.00 0.00 0.00 3.06
224 225 5.940192 TTTCATTCGACTAGCAAACATGT 57.060 34.783 0.00 0.00 0.00 3.21
225 226 6.636447 TGTTTTTCATTCGACTAGCAAACATG 59.364 34.615 7.11 0.00 30.05 3.21
226 227 6.734137 TGTTTTTCATTCGACTAGCAAACAT 58.266 32.000 7.11 0.00 30.05 2.71
227 228 6.037720 TCTGTTTTTCATTCGACTAGCAAACA 59.962 34.615 9.72 9.72 33.18 2.83
228 229 6.427150 TCTGTTTTTCATTCGACTAGCAAAC 58.573 36.000 0.00 0.00 0.00 2.93
229 230 6.612247 TCTGTTTTTCATTCGACTAGCAAA 57.388 33.333 0.00 0.00 0.00 3.68
230 231 6.801539 ATCTGTTTTTCATTCGACTAGCAA 57.198 33.333 0.00 0.00 0.00 3.91
231 232 7.097192 ACTATCTGTTTTTCATTCGACTAGCA 58.903 34.615 0.00 0.00 0.00 3.49
232 233 7.527084 ACTATCTGTTTTTCATTCGACTAGC 57.473 36.000 0.00 0.00 0.00 3.42
248 249 6.265196 TCCAAATCAACAGCAAAACTATCTGT 59.735 34.615 0.00 0.00 42.28 3.41
249 250 6.680810 TCCAAATCAACAGCAAAACTATCTG 58.319 36.000 0.00 0.00 0.00 2.90
250 251 6.899393 TCCAAATCAACAGCAAAACTATCT 57.101 33.333 0.00 0.00 0.00 1.98
251 252 6.753744 GGATCCAAATCAACAGCAAAACTATC 59.246 38.462 6.95 0.00 33.21 2.08
252 253 6.625740 CGGATCCAAATCAACAGCAAAACTAT 60.626 38.462 13.41 0.00 33.21 2.12
253 254 5.335583 CGGATCCAAATCAACAGCAAAACTA 60.336 40.000 13.41 0.00 33.21 2.24
254 255 4.559300 CGGATCCAAATCAACAGCAAAACT 60.559 41.667 13.41 0.00 33.21 2.66
255 256 3.674753 CGGATCCAAATCAACAGCAAAAC 59.325 43.478 13.41 0.00 33.21 2.43
256 257 3.305950 CCGGATCCAAATCAACAGCAAAA 60.306 43.478 13.41 0.00 33.21 2.44
257 258 2.230992 CCGGATCCAAATCAACAGCAAA 59.769 45.455 13.41 0.00 33.21 3.68
258 259 1.818060 CCGGATCCAAATCAACAGCAA 59.182 47.619 13.41 0.00 33.21 3.91
259 260 1.462616 CCGGATCCAAATCAACAGCA 58.537 50.000 13.41 0.00 33.21 4.41
260 261 0.101219 GCCGGATCCAAATCAACAGC 59.899 55.000 13.41 0.00 33.21 4.40
261 262 0.740737 GGCCGGATCCAAATCAACAG 59.259 55.000 13.41 0.00 33.21 3.16
262 263 1.029408 CGGCCGGATCCAAATCAACA 61.029 55.000 20.10 0.00 33.21 3.33
263 264 0.746563 TCGGCCGGATCCAAATCAAC 60.747 55.000 27.83 0.00 33.21 3.18
264 265 0.463654 CTCGGCCGGATCCAAATCAA 60.464 55.000 27.83 0.00 33.21 2.57
265 266 1.146041 CTCGGCCGGATCCAAATCA 59.854 57.895 27.83 0.00 33.21 2.57
266 267 0.463833 AACTCGGCCGGATCCAAATC 60.464 55.000 27.83 0.00 0.00 2.17
267 268 0.748005 CAACTCGGCCGGATCCAAAT 60.748 55.000 27.83 0.00 0.00 2.32
268 269 1.376683 CAACTCGGCCGGATCCAAA 60.377 57.895 27.83 2.05 0.00 3.28
269 270 2.267642 CAACTCGGCCGGATCCAA 59.732 61.111 27.83 2.94 0.00 3.53
270 271 4.467084 GCAACTCGGCCGGATCCA 62.467 66.667 27.83 3.84 0.00 3.41
278 279 1.811679 GCTACTCTGGCAACTCGGC 60.812 63.158 0.00 0.00 41.67 5.54
279 280 1.066303 CTAGCTACTCTGGCAACTCGG 59.934 57.143 0.00 0.00 37.61 4.63
280 281 1.746220 ACTAGCTACTCTGGCAACTCG 59.254 52.381 0.00 0.00 37.61 4.18
281 282 2.494073 ACACTAGCTACTCTGGCAACTC 59.506 50.000 0.00 0.00 37.61 3.01
282 283 2.530701 ACACTAGCTACTCTGGCAACT 58.469 47.619 0.00 0.00 37.61 3.16
283 284 3.320673 AACACTAGCTACTCTGGCAAC 57.679 47.619 0.00 0.00 0.00 4.17
284 285 3.306780 GGAAACACTAGCTACTCTGGCAA 60.307 47.826 0.00 0.00 0.00 4.52
285 286 2.233922 GGAAACACTAGCTACTCTGGCA 59.766 50.000 0.00 0.00 0.00 4.92
286 287 2.735762 CGGAAACACTAGCTACTCTGGC 60.736 54.545 0.00 0.00 0.00 4.85
287 288 2.159226 CCGGAAACACTAGCTACTCTGG 60.159 54.545 0.00 0.00 0.00 3.86
288 289 2.735762 GCCGGAAACACTAGCTACTCTG 60.736 54.545 5.05 0.00 0.00 3.35
289 290 1.477295 GCCGGAAACACTAGCTACTCT 59.523 52.381 5.05 0.00 0.00 3.24
290 291 1.471153 GGCCGGAAACACTAGCTACTC 60.471 57.143 5.05 0.00 0.00 2.59
291 292 0.535797 GGCCGGAAACACTAGCTACT 59.464 55.000 5.05 0.00 0.00 2.57
292 293 0.248289 TGGCCGGAAACACTAGCTAC 59.752 55.000 5.05 0.00 0.00 3.58
293 294 0.978151 TTGGCCGGAAACACTAGCTA 59.022 50.000 5.05 0.00 0.00 3.32
294 295 0.321653 CTTGGCCGGAAACACTAGCT 60.322 55.000 5.05 0.00 0.00 3.32
295 296 1.305930 CCTTGGCCGGAAACACTAGC 61.306 60.000 5.05 0.00 0.00 3.42
296 297 1.305930 GCCTTGGCCGGAAACACTAG 61.306 60.000 5.05 0.00 0.00 2.57
297 298 1.302993 GCCTTGGCCGGAAACACTA 60.303 57.895 5.05 0.00 0.00 2.74
298 299 2.597510 GCCTTGGCCGGAAACACT 60.598 61.111 5.05 0.00 0.00 3.55
299 300 4.038080 CGCCTTGGCCGGAAACAC 62.038 66.667 5.05 0.00 0.00 3.32
300 301 2.186602 TATCGCCTTGGCCGGAAACA 62.187 55.000 5.05 0.00 0.00 2.83
301 302 1.436983 CTATCGCCTTGGCCGGAAAC 61.437 60.000 5.05 0.00 0.00 2.78
302 303 1.153249 CTATCGCCTTGGCCGGAAA 60.153 57.895 5.05 0.00 0.00 3.13
303 304 2.504032 CTATCGCCTTGGCCGGAA 59.496 61.111 5.05 0.00 0.00 4.30
304 305 4.235762 GCTATCGCCTTGGCCGGA 62.236 66.667 5.05 0.00 0.00 5.14
305 306 3.757248 AAGCTATCGCCTTGGCCGG 62.757 63.158 6.02 0.00 36.60 6.13
306 307 2.203070 AAGCTATCGCCTTGGCCG 60.203 61.111 6.02 1.89 36.60 6.13
307 308 2.838974 GCAAGCTATCGCCTTGGCC 61.839 63.158 6.02 0.00 36.60 5.36
308 309 1.450531 ATGCAAGCTATCGCCTTGGC 61.451 55.000 0.75 0.75 36.60 4.52
309 310 0.309922 CATGCAAGCTATCGCCTTGG 59.690 55.000 0.00 0.00 36.60 3.61
310 311 1.302366 TCATGCAAGCTATCGCCTTG 58.698 50.000 0.00 0.00 36.60 3.61
311 312 1.945394 CTTCATGCAAGCTATCGCCTT 59.055 47.619 0.00 0.00 36.60 4.35
312 313 1.590932 CTTCATGCAAGCTATCGCCT 58.409 50.000 0.00 0.00 36.60 5.52
313 314 0.590195 CCTTCATGCAAGCTATCGCC 59.410 55.000 0.00 0.00 36.60 5.54
314 315 0.040603 GCCTTCATGCAAGCTATCGC 60.041 55.000 0.00 0.00 0.00 4.58
315 316 0.590195 GGCCTTCATGCAAGCTATCG 59.410 55.000 0.00 0.00 0.00 2.92
316 317 1.336125 GTGGCCTTCATGCAAGCTATC 59.664 52.381 3.32 0.00 0.00 2.08
317 318 1.396653 GTGGCCTTCATGCAAGCTAT 58.603 50.000 3.32 0.00 0.00 2.97
318 319 1.026182 CGTGGCCTTCATGCAAGCTA 61.026 55.000 3.32 0.00 0.00 3.32
319 320 2.338015 CGTGGCCTTCATGCAAGCT 61.338 57.895 3.32 0.00 0.00 3.74
320 321 2.180017 CGTGGCCTTCATGCAAGC 59.820 61.111 3.32 0.00 0.00 4.01
325 326 2.741985 TGACGCGTGGCCTTCATG 60.742 61.111 20.70 0.00 35.53 3.07
326 327 2.742372 GTGACGCGTGGCCTTCAT 60.742 61.111 20.70 0.00 0.00 2.57
327 328 4.980805 GGTGACGCGTGGCCTTCA 62.981 66.667 20.70 3.62 0.00 3.02
328 329 4.681978 AGGTGACGCGTGGCCTTC 62.682 66.667 20.70 0.06 0.00 3.46
329 330 4.681978 GAGGTGACGCGTGGCCTT 62.682 66.667 25.74 13.77 0.00 4.35
421 425 6.805271 GCACGAAGACGGTATATATACACATT 59.195 38.462 21.56 11.68 44.46 2.71
548 563 1.896660 GTGGTTTTGCGGCTGGAGA 60.897 57.895 0.00 0.00 0.00 3.71
588 603 9.405587 GGAATTTATTTCGTTTTCTGTTCATCA 57.594 29.630 0.00 0.00 34.98 3.07
770 826 1.969589 GCTTTCCGGGAAAAGGCGA 60.970 57.895 21.75 0.15 36.86 5.54
954 1012 4.620184 GGGCGTATTTATACTAGCACGAAG 59.380 45.833 0.00 0.00 0.00 3.79
962 1020 1.202114 CGGCGGGGCGTATTTATACTA 59.798 52.381 6.46 0.00 0.00 1.82
1010 1068 0.970640 TGTCAGTGCGTAGGCCTTTA 59.029 50.000 12.58 0.00 38.85 1.85
1072 1131 2.342648 GTCACGAACCTCGCCCTT 59.657 61.111 0.00 0.00 45.12 3.95
1204 1263 4.254492 CAGTAGCCTGATGATGATGATGG 58.746 47.826 0.00 0.00 41.50 3.51
1448 1528 4.106197 AGATCGATCGAGCTAACAAACAC 58.894 43.478 32.65 7.38 39.28 3.32
1451 1531 4.632538 TGAGATCGATCGAGCTAACAAA 57.367 40.909 33.48 15.31 41.31 2.83
1452 1532 4.632538 TTGAGATCGATCGAGCTAACAA 57.367 40.909 33.48 28.54 41.31 2.83
1453 1533 4.540824 CATTGAGATCGATCGAGCTAACA 58.459 43.478 33.48 24.95 41.31 2.41
1466 1565 2.686915 CCAAAGGCACTCCATTGAGATC 59.313 50.000 0.00 0.00 42.13 2.75
1517 1616 1.278038 GCTACGCATGCTTAGCTGC 59.722 57.895 35.97 19.62 39.65 5.25
1523 1622 1.473434 GGAGGTTAGCTACGCATGCTT 60.473 52.381 17.13 9.37 41.46 3.91
1539 1638 0.663688 CCTCGTAGTCACATCGGAGG 59.336 60.000 0.00 0.00 0.00 4.30
1542 1641 3.066900 AGAAATCCTCGTAGTCACATCGG 59.933 47.826 0.00 0.00 0.00 4.18
1543 1642 4.038361 CAGAAATCCTCGTAGTCACATCG 58.962 47.826 0.00 0.00 0.00 3.84
1554 1653 1.212616 GACATCGCCAGAAATCCTCG 58.787 55.000 0.00 0.00 0.00 4.63
1555 1654 1.587547 GGACATCGCCAGAAATCCTC 58.412 55.000 0.00 0.00 33.80 3.71
1556 1655 0.179073 CGGACATCGCCAGAAATCCT 60.179 55.000 0.00 0.00 34.20 3.24
1563 1662 0.999406 CACTAAACGGACATCGCCAG 59.001 55.000 0.00 0.00 43.89 4.85
1566 1665 2.273370 TCTCACTAAACGGACATCGC 57.727 50.000 0.00 0.00 43.89 4.58
1573 1672 6.627671 CGAAAAAGTCTTTTCTCACTAAACGG 59.372 38.462 10.95 0.00 45.57 4.44
1575 1674 7.370059 CGACGAAAAAGTCTTTTCTCACTAAAC 59.630 37.037 10.95 0.00 45.57 2.01
1586 1685 8.225356 GACTTATAGTCGACGAAAAAGTCTTT 57.775 34.615 29.33 13.13 38.71 2.52
1587 1686 7.793907 GACTTATAGTCGACGAAAAAGTCTT 57.206 36.000 29.33 13.37 38.71 3.01
1607 1706 9.978044 ATTTAACAGAGTACTTAAAGACGACTT 57.022 29.630 0.00 0.00 38.05 3.01
1610 1709 9.837525 GAGATTTAACAGAGTACTTAAAGACGA 57.162 33.333 0.00 0.00 0.00 4.20
1639 1738 9.139174 CGAGTTATTGAGCCAACAAAATATTTT 57.861 29.630 7.64 7.64 33.44 1.82
1647 1746 3.751175 CCTTCGAGTTATTGAGCCAACAA 59.249 43.478 0.00 0.00 0.00 2.83
1655 1754 3.953712 TGAGCACCTTCGAGTTATTGA 57.046 42.857 0.00 0.00 0.00 2.57
1661 1760 4.279671 CCTATTCTATGAGCACCTTCGAGT 59.720 45.833 0.00 0.00 0.00 4.18
1662 1761 4.520874 TCCTATTCTATGAGCACCTTCGAG 59.479 45.833 0.00 0.00 0.00 4.04
1665 1764 7.475137 AGTATCCTATTCTATGAGCACCTTC 57.525 40.000 0.00 0.00 0.00 3.46
1675 1774 5.952347 TGCATCCACGAGTATCCTATTCTAT 59.048 40.000 0.00 0.00 0.00 1.98
1676 1775 5.321927 TGCATCCACGAGTATCCTATTCTA 58.678 41.667 0.00 0.00 0.00 2.10
1677 1776 4.152647 TGCATCCACGAGTATCCTATTCT 58.847 43.478 0.00 0.00 0.00 2.40
1678 1777 4.521130 TGCATCCACGAGTATCCTATTC 57.479 45.455 0.00 0.00 0.00 1.75
1679 1778 5.489792 AATGCATCCACGAGTATCCTATT 57.510 39.130 0.00 0.00 0.00 1.73
1680 1779 6.798427 ATAATGCATCCACGAGTATCCTAT 57.202 37.500 0.00 0.00 0.00 2.57
1681 1780 7.712204 TTATAATGCATCCACGAGTATCCTA 57.288 36.000 0.00 0.00 0.00 2.94
1682 1781 6.605471 TTATAATGCATCCACGAGTATCCT 57.395 37.500 0.00 0.00 0.00 3.24
1683 1782 6.313905 CCTTTATAATGCATCCACGAGTATCC 59.686 42.308 0.00 0.00 0.00 2.59
1684 1783 6.874134 ACCTTTATAATGCATCCACGAGTATC 59.126 38.462 0.00 0.00 0.00 2.24
1685 1784 6.650807 CACCTTTATAATGCATCCACGAGTAT 59.349 38.462 0.00 0.00 0.00 2.12
1686 1785 5.989168 CACCTTTATAATGCATCCACGAGTA 59.011 40.000 0.00 0.00 0.00 2.59
1687 1786 4.816385 CACCTTTATAATGCATCCACGAGT 59.184 41.667 0.00 0.00 0.00 4.18
1688 1787 5.056480 TCACCTTTATAATGCATCCACGAG 58.944 41.667 0.00 0.00 0.00 4.18
1689 1788 5.029807 TCACCTTTATAATGCATCCACGA 57.970 39.130 0.00 0.00 0.00 4.35
1690 1789 4.816385 ACTCACCTTTATAATGCATCCACG 59.184 41.667 0.00 0.00 0.00 4.94
1691 1790 7.986085 ATACTCACCTTTATAATGCATCCAC 57.014 36.000 0.00 0.00 0.00 4.02
1692 1791 9.671279 CATATACTCACCTTTATAATGCATCCA 57.329 33.333 0.00 0.00 0.00 3.41
1693 1792 9.672673 ACATATACTCACCTTTATAATGCATCC 57.327 33.333 0.00 0.00 0.00 3.51
1695 1794 8.950210 GCACATATACTCACCTTTATAATGCAT 58.050 33.333 0.00 0.00 32.12 3.96
1696 1795 7.390440 GGCACATATACTCACCTTTATAATGCA 59.610 37.037 0.00 0.00 32.78 3.96
1697 1796 7.607991 AGGCACATATACTCACCTTTATAATGC 59.392 37.037 0.00 0.00 31.58 3.56
1700 1799 8.301720 CGTAGGCACATATACTCACCTTTATAA 58.698 37.037 0.00 0.00 0.00 0.98
1701 1800 7.576287 GCGTAGGCACATATACTCACCTTTATA 60.576 40.741 1.75 0.00 39.62 0.98
1702 1801 6.688578 CGTAGGCACATATACTCACCTTTAT 58.311 40.000 0.00 0.00 0.00 1.40
1703 1802 5.508489 GCGTAGGCACATATACTCACCTTTA 60.508 44.000 1.75 0.00 39.62 1.85
1704 1803 4.739735 GCGTAGGCACATATACTCACCTTT 60.740 45.833 1.75 0.00 39.62 3.11
1705 1804 3.243771 GCGTAGGCACATATACTCACCTT 60.244 47.826 1.75 0.00 39.62 3.50
1706 1805 2.296471 GCGTAGGCACATATACTCACCT 59.704 50.000 1.75 0.00 39.62 4.00
1707 1806 2.035449 TGCGTAGGCACATATACTCACC 59.965 50.000 5.89 0.00 46.21 4.02
1708 1807 3.364889 TGCGTAGGCACATATACTCAC 57.635 47.619 5.89 0.00 46.21 3.51
1719 1818 7.578763 ATATAACTGTATATGCTTGCGTAGGCA 60.579 37.037 13.43 13.43 38.16 4.75
1720 1819 2.755650 ACTGTATATGCTTGCGTAGGC 58.244 47.619 0.00 0.00 40.52 3.93
1721 1820 8.595533 CAATATAACTGTATATGCTTGCGTAGG 58.404 37.037 1.04 0.00 33.88 3.18
1722 1821 9.140286 ACAATATAACTGTATATGCTTGCGTAG 57.860 33.333 1.04 0.00 33.88 3.51
1724 1823 7.962964 ACAATATAACTGTATATGCTTGCGT 57.037 32.000 0.00 0.00 33.88 5.24
1816 1915 8.847196 GGTGTGATACTCATATACTCTGTTGTA 58.153 37.037 0.00 0.00 0.00 2.41
1817 1916 7.561722 AGGTGTGATACTCATATACTCTGTTGT 59.438 37.037 0.00 0.00 0.00 3.32
1818 1917 7.946207 AGGTGTGATACTCATATACTCTGTTG 58.054 38.462 0.00 0.00 0.00 3.33
1819 1918 8.540507 AAGGTGTGATACTCATATACTCTGTT 57.459 34.615 0.00 0.00 0.00 3.16
1820 1919 9.642343 TTAAGGTGTGATACTCATATACTCTGT 57.358 33.333 0.00 0.00 0.00 3.41
1829 1928 8.918202 TGTTCTTTTTAAGGTGTGATACTCAT 57.082 30.769 0.00 0.00 0.00 2.90
1830 1929 8.740123 TTGTTCTTTTTAAGGTGTGATACTCA 57.260 30.769 0.00 0.00 0.00 3.41
1833 1932 9.244799 CCTTTTGTTCTTTTTAAGGTGTGATAC 57.755 33.333 0.00 0.00 32.55 2.24
1834 1933 8.973182 ACCTTTTGTTCTTTTTAAGGTGTGATA 58.027 29.630 0.00 0.00 45.04 2.15
1835 1934 7.847096 ACCTTTTGTTCTTTTTAAGGTGTGAT 58.153 30.769 0.00 0.00 45.04 3.06
1836 1935 7.234661 ACCTTTTGTTCTTTTTAAGGTGTGA 57.765 32.000 0.00 0.00 45.04 3.58
1837 1936 6.252655 CGACCTTTTGTTCTTTTTAAGGTGTG 59.747 38.462 9.36 0.00 46.32 3.82
1838 1937 6.071784 ACGACCTTTTGTTCTTTTTAAGGTGT 60.072 34.615 9.36 5.81 46.32 4.16
1839 1938 6.327154 ACGACCTTTTGTTCTTTTTAAGGTG 58.673 36.000 9.36 5.29 46.32 4.00
1841 1940 5.975344 GGACGACCTTTTGTTCTTTTTAAGG 59.025 40.000 0.00 0.00 40.88 2.69
1842 1941 6.792326 AGGACGACCTTTTGTTCTTTTTAAG 58.208 36.000 0.00 0.00 45.36 1.85
1843 1942 6.762702 AGGACGACCTTTTGTTCTTTTTAA 57.237 33.333 0.00 0.00 45.36 1.52
1858 1957 2.194271 GAACGAATGATGAGGACGACC 58.806 52.381 0.00 0.00 0.00 4.79
1859 1958 2.876091 TGAACGAATGATGAGGACGAC 58.124 47.619 0.00 0.00 0.00 4.34
1860 1959 3.056821 AGTTGAACGAATGATGAGGACGA 60.057 43.478 0.00 0.00 0.00 4.20
1861 1960 3.254060 AGTTGAACGAATGATGAGGACG 58.746 45.455 0.00 0.00 0.00 4.79
1862 1961 5.613358 AAAGTTGAACGAATGATGAGGAC 57.387 39.130 0.00 0.00 0.00 3.85
1863 1962 6.464222 AGTAAAGTTGAACGAATGATGAGGA 58.536 36.000 0.00 0.00 0.00 3.71
1864 1963 6.727824 AGTAAAGTTGAACGAATGATGAGG 57.272 37.500 0.00 0.00 0.00 3.86
1865 1964 8.926710 AGTAAGTAAAGTTGAACGAATGATGAG 58.073 33.333 0.00 0.00 0.00 2.90
1866 1965 8.827177 AGTAAGTAAAGTTGAACGAATGATGA 57.173 30.769 0.00 0.00 0.00 2.92
1867 1966 9.878599 AAAGTAAGTAAAGTTGAACGAATGATG 57.121 29.630 0.00 0.00 0.00 3.07
1902 2001 9.739786 GGCATGACAAAAATTAACGATAAAAAG 57.260 29.630 0.00 0.00 0.00 2.27
1903 2002 8.713271 GGGCATGACAAAAATTAACGATAAAAA 58.287 29.630 0.00 0.00 0.00 1.94
1904 2003 8.091449 AGGGCATGACAAAAATTAACGATAAAA 58.909 29.630 0.00 0.00 0.00 1.52
1905 2004 7.607250 AGGGCATGACAAAAATTAACGATAAA 58.393 30.769 0.00 0.00 0.00 1.40
1906 2005 7.164230 AGGGCATGACAAAAATTAACGATAA 57.836 32.000 0.00 0.00 0.00 1.75
1907 2006 6.767524 AGGGCATGACAAAAATTAACGATA 57.232 33.333 0.00 0.00 0.00 2.92
1908 2007 5.659440 AGGGCATGACAAAAATTAACGAT 57.341 34.783 0.00 0.00 0.00 3.73
1909 2008 6.576662 TTAGGGCATGACAAAAATTAACGA 57.423 33.333 0.00 0.00 0.00 3.85
1910 2009 7.826260 AATTAGGGCATGACAAAAATTAACG 57.174 32.000 0.00 0.00 0.00 3.18
1914 2013 8.922931 AAGAAAATTAGGGCATGACAAAAATT 57.077 26.923 0.00 0.00 0.00 1.82
1915 2014 8.156165 TGAAGAAAATTAGGGCATGACAAAAAT 58.844 29.630 0.00 0.00 0.00 1.82
1916 2015 7.504403 TGAAGAAAATTAGGGCATGACAAAAA 58.496 30.769 0.00 0.00 0.00 1.94
1917 2016 7.060383 TGAAGAAAATTAGGGCATGACAAAA 57.940 32.000 0.00 0.00 0.00 2.44
1918 2017 6.662865 TGAAGAAAATTAGGGCATGACAAA 57.337 33.333 0.00 0.00 0.00 2.83
1919 2018 6.855763 ATGAAGAAAATTAGGGCATGACAA 57.144 33.333 0.00 0.00 0.00 3.18
1920 2019 7.345691 TCTATGAAGAAAATTAGGGCATGACA 58.654 34.615 0.00 0.00 0.00 3.58
1921 2020 7.807977 TCTATGAAGAAAATTAGGGCATGAC 57.192 36.000 0.00 0.00 0.00 3.06
1922 2021 9.425248 AAATCTATGAAGAAAATTAGGGCATGA 57.575 29.630 0.00 0.00 34.73 3.07
1925 2024 9.874205 CAAAAATCTATGAAGAAAATTAGGGCA 57.126 29.630 0.00 0.00 34.73 5.36
1931 2030 9.965824 ACGTGTCAAAAATCTATGAAGAAAATT 57.034 25.926 0.00 0.00 34.73 1.82
1932 2031 9.398170 CACGTGTCAAAAATCTATGAAGAAAAT 57.602 29.630 7.58 0.00 34.73 1.82
1933 2032 8.402472 ACACGTGTCAAAAATCTATGAAGAAAA 58.598 29.630 17.22 0.00 34.73 2.29
1934 2033 7.855409 CACACGTGTCAAAAATCTATGAAGAAA 59.145 33.333 20.49 0.00 34.73 2.52
1935 2034 7.225734 TCACACGTGTCAAAAATCTATGAAGAA 59.774 33.333 20.49 0.00 34.73 2.52
1936 2035 6.704050 TCACACGTGTCAAAAATCTATGAAGA 59.296 34.615 20.49 4.09 35.80 2.87
1937 2036 6.887368 TCACACGTGTCAAAAATCTATGAAG 58.113 36.000 20.49 1.42 0.00 3.02
1938 2037 6.852858 TCACACGTGTCAAAAATCTATGAA 57.147 33.333 20.49 0.00 0.00 2.57
1939 2038 8.541133 TTATCACACGTGTCAAAAATCTATGA 57.459 30.769 20.49 8.89 0.00 2.15
1940 2039 9.773328 ATTTATCACACGTGTCAAAAATCTATG 57.227 29.630 20.49 2.92 0.00 2.23
1943 2042 9.825972 CTAATTTATCACACGTGTCAAAAATCT 57.174 29.630 20.49 14.93 0.00 2.40
1944 2043 9.820229 TCTAATTTATCACACGTGTCAAAAATC 57.180 29.630 20.49 0.00 0.00 2.17
1945 2044 9.607285 GTCTAATTTATCACACGTGTCAAAAAT 57.393 29.630 20.49 19.36 0.00 1.82
1946 2045 8.613482 TGTCTAATTTATCACACGTGTCAAAAA 58.387 29.630 20.49 18.03 0.00 1.94
1947 2046 8.144155 TGTCTAATTTATCACACGTGTCAAAA 57.856 30.769 20.49 18.37 0.00 2.44
1948 2047 7.716768 TGTCTAATTTATCACACGTGTCAAA 57.283 32.000 20.49 18.41 0.00 2.69
1949 2048 7.064134 GGATGTCTAATTTATCACACGTGTCAA 59.936 37.037 20.49 10.70 0.00 3.18
1950 2049 6.533723 GGATGTCTAATTTATCACACGTGTCA 59.466 38.462 20.49 6.43 0.00 3.58
1951 2050 6.533723 TGGATGTCTAATTTATCACACGTGTC 59.466 38.462 20.49 3.29 0.00 3.67
1961 2060 6.073447 TGTGTGGGTGGATGTCTAATTTAT 57.927 37.500 0.00 0.00 0.00 1.40
2025 2124 4.320494 GGCAATTCTAATATTCGCCCACAG 60.320 45.833 0.00 0.00 31.35 3.66
2051 2150 2.109387 TAGTTGCGCCCACACGTT 59.891 55.556 4.18 0.00 34.88 3.99
2097 2196 3.636929 ATGCGCGGGGTGGAATGAA 62.637 57.895 8.83 0.00 0.00 2.57
2114 2214 3.574614 GCATTTTTGCTTCGTACCACAT 58.425 40.909 0.00 0.00 0.00 3.21
2176 2277 2.304761 TCCCGGATGTCAACTAAAGCTT 59.695 45.455 0.73 0.00 0.00 3.74
2188 2290 0.033208 ACATTTGCCATCCCGGATGT 60.033 50.000 23.27 4.36 38.28 3.06
2217 2319 3.777106 AAACAGAGAGAGTTGCCATGA 57.223 42.857 0.00 0.00 0.00 3.07
2289 2392 9.970553 ATGGCAACTATATTAGACATGAATCAT 57.029 29.630 0.00 0.00 37.61 2.45
2290 2393 9.223099 CATGGCAACTATATTAGACATGAATCA 57.777 33.333 0.00 0.00 37.61 2.57
2291 2394 8.180267 GCATGGCAACTATATTAGACATGAATC 58.820 37.037 11.00 0.00 37.61 2.52
2292 2395 7.148356 CGCATGGCAACTATATTAGACATGAAT 60.148 37.037 11.00 0.00 37.61 2.57
2293 2396 6.147656 CGCATGGCAACTATATTAGACATGAA 59.852 38.462 11.00 0.00 37.61 2.57
2294 2397 5.639082 CGCATGGCAACTATATTAGACATGA 59.361 40.000 11.00 0.00 37.61 3.07
2295 2398 5.409520 ACGCATGGCAACTATATTAGACATG 59.590 40.000 2.86 2.86 37.61 3.21
2296 2399 5.409520 CACGCATGGCAACTATATTAGACAT 59.590 40.000 0.00 0.00 37.61 3.06
2297 2400 4.749598 CACGCATGGCAACTATATTAGACA 59.250 41.667 0.00 0.00 37.61 3.41
2298 2401 4.377431 GCACGCATGGCAACTATATTAGAC 60.377 45.833 0.00 0.00 37.61 2.59
2299 2402 3.745975 GCACGCATGGCAACTATATTAGA 59.254 43.478 0.00 0.00 37.61 2.10
2300 2403 3.748048 AGCACGCATGGCAACTATATTAG 59.252 43.478 0.00 0.00 37.61 1.73
2301 2404 3.738982 AGCACGCATGGCAACTATATTA 58.261 40.909 0.00 0.00 37.61 0.98
2303 2406 2.260844 AGCACGCATGGCAACTATAT 57.739 45.000 0.00 0.00 37.61 0.86
2324 2427 5.048713 GGTTAATCATACATGGCAACTAGGC 60.049 44.000 0.00 0.00 44.50 3.93
2342 2528 7.759489 AACACACATGACAACTATGGTTAAT 57.241 32.000 0.00 0.00 33.88 1.40
2347 2533 5.705441 AGGTAAACACACATGACAACTATGG 59.295 40.000 0.00 0.00 0.00 2.74
2389 2643 1.339055 TGGTAGATGGCAACTGCAGTC 60.339 52.381 21.95 8.57 44.36 3.51
2526 2780 3.792401 CTCACACAGTCACAAACCAGTA 58.208 45.455 0.00 0.00 0.00 2.74
2534 2788 1.068588 GTACCTGCTCACACAGTCACA 59.931 52.381 0.00 0.00 35.83 3.58
2546 2800 2.995574 AGCGAACCGGTACCTGCT 60.996 61.111 8.00 12.44 35.27 4.24
2552 2806 2.256158 CGTGTGAGCGAACCGGTA 59.744 61.111 8.00 0.00 37.83 4.02
2670 2934 7.999679 TGATCCACCTTAATTCTATTTTGCAG 58.000 34.615 0.00 0.00 0.00 4.41
2678 2942 4.726825 AGGCCTTGATCCACCTTAATTCTA 59.273 41.667 0.00 0.00 0.00 2.10
2700 2964 1.093972 TATTTGCACATCGCCCACAG 58.906 50.000 0.00 0.00 41.33 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.