Multiple sequence alignment - TraesCS6D01G124900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G124900 chr6D 100.000 2837 0 0 1 2837 89167488 89170324 0.000000e+00 5240
1 TraesCS6D01G124900 chr6D 80.195 1944 337 30 6 1915 89157088 89159017 0.000000e+00 1413
2 TraesCS6D01G124900 chr6D 80.428 1497 271 19 61 1548 89069329 89070812 0.000000e+00 1122
3 TraesCS6D01G124900 chr6D 77.650 1302 276 13 1 1297 89301646 89302937 0.000000e+00 778
4 TraesCS6D01G124900 chr6D 77.839 361 72 6 938 1297 89304164 89304517 1.710000e-52 217
5 TraesCS6D01G124900 chr6D 95.588 68 3 0 2518 2585 99730289 99730222 2.990000e-20 110
6 TraesCS6D01G124900 chr6A 88.030 1746 200 8 166 1906 107270589 107272330 0.000000e+00 2058
7 TraesCS6D01G124900 chr6A 79.990 1944 341 30 6 1915 107244204 107246133 0.000000e+00 1391
8 TraesCS6D01G124900 chr6A 80.817 1788 322 18 61 1840 107215332 107217106 0.000000e+00 1382
9 TraesCS6D01G124900 chr6A 78.902 1839 337 37 3 1809 107682219 107684038 0.000000e+00 1199
10 TraesCS6D01G124900 chr6A 88.608 316 29 5 1 312 107270279 107270591 7.420000e-101 377
11 TraesCS6D01G124900 chr6B 87.188 1764 201 20 137 1892 171206015 171207761 0.000000e+00 1982
12 TraesCS6D01G124900 chr6B 81.309 1787 314 17 61 1840 171030074 171031847 0.000000e+00 1432
13 TraesCS6D01G124900 chr6B 80.106 1890 328 28 58 1915 171183586 171185459 0.000000e+00 1363
14 TraesCS6D01G124900 chr6B 79.300 1628 318 17 1 1621 171700863 171702478 0.000000e+00 1122
15 TraesCS6D01G124900 chr6B 91.831 355 24 4 1884 2234 171210350 171210703 9.130000e-135 490
16 TraesCS6D01G124900 chr6B 89.557 316 26 5 1 312 171205731 171206043 7.370000e-106 394
17 TraesCS6D01G124900 chr6B 84.375 320 23 19 2420 2714 171213247 171213564 3.580000e-74 289
18 TraesCS6D01G124900 chr6B 92.683 82 2 3 2254 2331 171213157 171213238 6.420000e-22 115
19 TraesCS6D01G124900 chr7D 78.039 255 49 7 65 315 634088124 634088375 1.360000e-33 154
20 TraesCS6D01G124900 chr5A 97.143 70 2 0 2516 2585 367782485 367782416 4.960000e-23 119
21 TraesCS6D01G124900 chr2A 95.833 72 3 0 2514 2585 690329424 690329353 1.790000e-22 117
22 TraesCS6D01G124900 chr2A 94.521 73 3 1 2513 2585 636911543 636911472 8.310000e-21 111
23 TraesCS6D01G124900 chr2A 90.244 82 6 2 2505 2585 712843525 712843605 3.870000e-19 106
24 TraesCS6D01G124900 chr7A 97.059 68 2 0 2518 2585 707832417 707832350 6.420000e-22 115
25 TraesCS6D01G124900 chr5B 97.059 68 2 0 2518 2585 521983137 521983070 6.420000e-22 115
26 TraesCS6D01G124900 chr3B 93.421 76 5 0 2510 2585 459409039 459409114 2.310000e-21 113
27 TraesCS6D01G124900 chr4D 89.888 89 6 3 2498 2585 270678530 270678616 8.310000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G124900 chr6D 89167488 89170324 2836 False 5240.0 5240 100.0000 1 2837 1 chr6D.!!$F3 2836
1 TraesCS6D01G124900 chr6D 89157088 89159017 1929 False 1413.0 1413 80.1950 6 1915 1 chr6D.!!$F2 1909
2 TraesCS6D01G124900 chr6D 89069329 89070812 1483 False 1122.0 1122 80.4280 61 1548 1 chr6D.!!$F1 1487
3 TraesCS6D01G124900 chr6D 89301646 89304517 2871 False 497.5 778 77.7445 1 1297 2 chr6D.!!$F4 1296
4 TraesCS6D01G124900 chr6A 107244204 107246133 1929 False 1391.0 1391 79.9900 6 1915 1 chr6A.!!$F2 1909
5 TraesCS6D01G124900 chr6A 107215332 107217106 1774 False 1382.0 1382 80.8170 61 1840 1 chr6A.!!$F1 1779
6 TraesCS6D01G124900 chr6A 107270279 107272330 2051 False 1217.5 2058 88.3190 1 1906 2 chr6A.!!$F4 1905
7 TraesCS6D01G124900 chr6A 107682219 107684038 1819 False 1199.0 1199 78.9020 3 1809 1 chr6A.!!$F3 1806
8 TraesCS6D01G124900 chr6B 171030074 171031847 1773 False 1432.0 1432 81.3090 61 1840 1 chr6B.!!$F1 1779
9 TraesCS6D01G124900 chr6B 171183586 171185459 1873 False 1363.0 1363 80.1060 58 1915 1 chr6B.!!$F2 1857
10 TraesCS6D01G124900 chr6B 171700863 171702478 1615 False 1122.0 1122 79.3000 1 1621 1 chr6B.!!$F3 1620
11 TraesCS6D01G124900 chr6B 171205731 171213564 7833 False 654.0 1982 89.1268 1 2714 5 chr6B.!!$F4 2713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 1011 0.31179 CGCTGCACCTGTCAAACAAT 59.688 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 7665 0.11734 AGGCACTTCTCCACTACCCT 59.883 55.0 0.0 0.0 27.25 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.739562 CTCACTCGGCCAGCTTCAC 60.740 63.158 2.24 0.00 0.00 3.18
41 42 1.515952 CAGCTTCACTCGCTCGAGG 60.516 63.158 21.34 11.53 45.88 4.63
46 47 1.403679 CTTCACTCGCTCGAGGATCTT 59.596 52.381 21.34 0.00 45.88 2.40
48 49 0.869454 CACTCGCTCGAGGATCTTGC 60.869 60.000 21.34 0.00 45.88 4.01
114 116 4.645762 GGAACCTTACTAGTCTTACCGG 57.354 50.000 0.00 0.00 0.00 5.28
160 163 0.322816 TGGAAGCTTGCCACCATCTC 60.323 55.000 15.98 0.00 0.00 2.75
182 185 0.319813 GCCAGGGTGCAAACAATGAC 60.320 55.000 0.00 0.00 0.00 3.06
198 201 1.917273 TGACGTATTTCAGCGTAGGC 58.083 50.000 0.00 0.00 41.70 3.93
256 259 5.715070 TGTTTACAAACTGGACAAACCTTG 58.285 37.500 6.41 0.00 39.59 3.61
259 262 3.023832 ACAAACTGGACAAACCTTGAGG 58.976 45.455 0.00 0.00 39.86 3.86
260 263 9.187303 GTTTACAAACTGGACAAACCTTGAGGT 62.187 40.741 0.00 0.00 42.06 3.85
293 440 6.398234 TGCAAACAACTTATTAGCTGGAAA 57.602 33.333 0.00 0.00 0.00 3.13
323 470 0.617413 CAGATCAGCAACTGGGAGGT 59.383 55.000 0.00 0.00 31.51 3.85
373 520 1.202382 ACTTTACTGGCTCGATACCGC 60.202 52.381 0.00 0.00 35.37 5.68
394 541 1.288633 TGGAGATGGGAAACATGCCAT 59.711 47.619 1.17 1.17 40.72 4.40
397 544 3.554934 GAGATGGGAAACATGCCATACA 58.445 45.455 1.61 0.00 40.72 2.29
432 579 7.751732 TGGATTTGTCAAAGAATCATCTTACG 58.248 34.615 4.03 0.00 45.19 3.18
472 619 9.208022 CTCATATCGGTAATTTGTCATATGTGT 57.792 33.333 1.90 0.00 0.00 3.72
478 625 9.384764 TCGGTAATTTGTCATATGTGTATTTCA 57.615 29.630 1.90 0.00 0.00 2.69
518 665 0.979665 CTTGAGGGTGAGCTTCCTGA 59.020 55.000 8.64 0.00 32.74 3.86
536 683 2.229784 CTGAAACCATCTCCTTGTTGGC 59.770 50.000 0.00 0.00 38.72 4.52
538 685 2.610438 AACCATCTCCTTGTTGGCAT 57.390 45.000 0.00 0.00 38.72 4.40
625 772 1.064758 AGTTGCCAGTTGTCAAGGTGA 60.065 47.619 0.00 0.00 0.00 4.02
666 822 2.027745 TGGAGAATCACTGTCTGCCTTC 60.028 50.000 0.00 0.00 36.25 3.46
678 834 3.007614 TGTCTGCCTTCTGTAACCTAACC 59.992 47.826 0.00 0.00 0.00 2.85
680 836 3.260884 TCTGCCTTCTGTAACCTAACCAG 59.739 47.826 0.00 0.00 0.00 4.00
684 840 4.621038 GCCTTCTGTAACCTAACCAGTCTC 60.621 50.000 0.00 0.00 0.00 3.36
688 844 5.091552 TCTGTAACCTAACCAGTCTCCAAT 58.908 41.667 0.00 0.00 0.00 3.16
712 868 5.601662 TCCTGGATCTATCGAACAATCAAC 58.398 41.667 0.00 0.00 0.00 3.18
759 915 6.431198 TTGTGGAACTTGAAAGAACTACAC 57.569 37.500 0.00 0.00 38.04 2.90
769 925 5.794894 TGAAAGAACTACACTCCTTGGATC 58.205 41.667 0.00 0.00 0.00 3.36
776 932 1.546476 ACACTCCTTGGATCTGTCGAC 59.454 52.381 9.11 9.11 0.00 4.20
789 945 0.313672 TGTCGACCAATGCTTTTGCC 59.686 50.000 14.12 0.00 46.87 4.52
852 1011 0.311790 CGCTGCACCTGTCAAACAAT 59.688 50.000 0.00 0.00 0.00 2.71
891 1050 6.479990 GCTTTCCAGCAATGTTAAAGAACTTT 59.520 34.615 5.18 5.18 46.49 2.66
932 1091 5.044179 TGGATCTGGGGAACAATAAGATGTT 60.044 40.000 0.00 0.00 45.82 2.71
945 1104 0.537143 AGATGTTTGGCGCACTTCCA 60.537 50.000 10.83 0.00 0.00 3.53
991 1150 1.980765 TGCTGAGAATCCTTGGACTGT 59.019 47.619 0.00 0.00 0.00 3.55
1032 1191 2.983296 AGTATTCCCAGGCAGCTATCT 58.017 47.619 0.00 0.00 0.00 1.98
1047 1206 4.036518 AGCTATCTCAACTGTCCCATCTT 58.963 43.478 0.00 0.00 0.00 2.40
1292 1451 4.099727 TGATCTCTCTGGCAATTCTCTCTG 59.900 45.833 0.00 0.00 0.00 3.35
1302 1461 4.219288 GGCAATTCTCTCTGTGGTGAAATT 59.781 41.667 0.00 0.00 0.00 1.82
1345 1504 7.727181 TCTTAGAGGCATCCAGTTACTAAATC 58.273 38.462 0.00 0.00 0.00 2.17
1413 1572 6.314152 GCAGTCTAAAGTTGTTAGAATCCCTC 59.686 42.308 0.00 0.00 33.32 4.30
1459 1618 5.087323 CAGGTCCTATTCCTCCTAGCATAA 58.913 45.833 0.00 0.00 32.37 1.90
1478 1637 7.989826 AGCATAACAAACTTGATATTCCTCAC 58.010 34.615 0.00 0.00 0.00 3.51
1515 1674 3.119245 CGAACAACCTTCTATCCGGAGAA 60.119 47.826 11.34 8.21 34.30 2.87
1522 1681 4.589374 ACCTTCTATCCGGAGAAATACCTG 59.411 45.833 11.34 0.00 35.06 4.00
1554 1713 4.095590 CAAACATTGGACGGCCCT 57.904 55.556 3.83 0.00 35.38 5.19
1555 1714 1.586028 CAAACATTGGACGGCCCTG 59.414 57.895 3.83 4.83 35.38 4.45
1686 1863 2.419297 GGACTACTCAGTGATTGCTGGG 60.419 54.545 0.00 0.00 42.44 4.45
1732 1909 4.440940 GGTTTGGTACACTGTTTTTCTGGG 60.441 45.833 0.00 0.00 39.29 4.45
1746 1923 1.714541 TCTGGGAGATCTGGAGATGC 58.285 55.000 0.00 0.00 34.37 3.91
1911 4801 4.588899 TCTATGTTTGCTGTTGCCAGTAT 58.411 39.130 0.00 0.00 41.02 2.12
1940 4830 5.063060 GTGAAGCAAGTATACCAAGTAACCG 59.937 44.000 0.00 0.00 0.00 4.44
1956 4846 3.486263 CGGCATCGGGTTTCTGTC 58.514 61.111 0.00 0.00 0.00 3.51
1965 4855 3.750371 TCGGGTTTCTGTCATGTTGATT 58.250 40.909 0.00 0.00 0.00 2.57
2010 4904 7.648177 AAACATATATAGATTGGGTCAGGGT 57.352 36.000 0.00 0.00 0.00 4.34
2096 4990 4.568152 AAAGTGTACTGCGCTTGATTTT 57.432 36.364 9.73 0.00 46.21 1.82
2101 4995 1.620822 ACTGCGCTTGATTTTCCCTT 58.379 45.000 9.73 0.00 0.00 3.95
2103 4997 3.153919 ACTGCGCTTGATTTTCCCTTTA 58.846 40.909 9.73 0.00 0.00 1.85
2107 5001 4.166523 GCGCTTGATTTTCCCTTTAGTTC 58.833 43.478 0.00 0.00 0.00 3.01
2110 5004 5.619981 CGCTTGATTTTCCCTTTAGTTCAGG 60.620 44.000 0.00 0.00 0.00 3.86
2121 5015 4.389374 CTTTAGTTCAGGGTTGAAGAGCA 58.611 43.478 0.00 0.00 43.66 4.26
2135 5029 7.705752 GGGTTGAAGAGCAGTATAAGTTAGTAC 59.294 40.741 0.00 0.00 0.00 2.73
2140 5034 8.694581 AAGAGCAGTATAAGTTAGTACTAGGG 57.305 38.462 2.23 0.00 33.17 3.53
2178 5072 2.582052 ACGATCTTGAGGGCACAAAAA 58.418 42.857 0.00 0.00 0.00 1.94
2216 5110 1.244019 GGCGAGTTTGGTTCCTGCAT 61.244 55.000 0.00 0.00 0.00 3.96
2327 7659 3.572642 TCCCTAGAGTGTGTTCAGTTCA 58.427 45.455 0.00 0.00 0.00 3.18
2331 7663 5.010719 CCCTAGAGTGTGTTCAGTTCACTAA 59.989 44.000 0.00 0.00 41.58 2.24
2333 7665 6.984474 CCTAGAGTGTGTTCAGTTCACTAAAA 59.016 38.462 0.00 0.00 41.58 1.52
2335 7667 5.817816 AGAGTGTGTTCAGTTCACTAAAAGG 59.182 40.000 0.00 0.00 41.58 3.11
2336 7668 4.881850 AGTGTGTTCAGTTCACTAAAAGGG 59.118 41.667 0.00 0.00 40.06 3.95
2337 7669 4.638865 GTGTGTTCAGTTCACTAAAAGGGT 59.361 41.667 0.00 0.00 36.83 4.34
2338 7670 5.818857 GTGTGTTCAGTTCACTAAAAGGGTA 59.181 40.000 0.00 0.00 36.83 3.69
2339 7671 6.018180 GTGTGTTCAGTTCACTAAAAGGGTAG 60.018 42.308 0.00 0.00 36.83 3.18
2348 7680 5.485209 CACTAAAAGGGTAGTGGAGAAGT 57.515 43.478 4.74 0.00 44.85 3.01
2349 7681 5.238583 CACTAAAAGGGTAGTGGAGAAGTG 58.761 45.833 4.74 0.00 44.85 3.16
2350 7682 2.861147 AAAGGGTAGTGGAGAAGTGC 57.139 50.000 0.00 0.00 0.00 4.40
2351 7683 0.984995 AAGGGTAGTGGAGAAGTGCC 59.015 55.000 0.00 0.00 33.33 5.01
2352 7684 0.117340 AGGGTAGTGGAGAAGTGCCT 59.883 55.000 0.00 0.00 34.50 4.75
2353 7685 1.361543 AGGGTAGTGGAGAAGTGCCTA 59.638 52.381 0.00 0.00 34.50 3.93
2354 7686 2.185387 GGGTAGTGGAGAAGTGCCTAA 58.815 52.381 0.00 0.00 34.50 2.69
2355 7687 2.168728 GGGTAGTGGAGAAGTGCCTAAG 59.831 54.545 0.00 0.00 34.50 2.18
2356 7688 2.418884 GGTAGTGGAGAAGTGCCTAAGC 60.419 54.545 0.00 0.00 40.48 3.09
2357 7689 1.650528 AGTGGAGAAGTGCCTAAGCT 58.349 50.000 0.00 0.00 40.80 3.74
2358 7690 1.981495 AGTGGAGAAGTGCCTAAGCTT 59.019 47.619 3.48 3.48 40.80 3.74
2359 7691 2.027653 AGTGGAGAAGTGCCTAAGCTTC 60.028 50.000 0.00 0.00 40.84 3.86
2360 7692 1.066858 TGGAGAAGTGCCTAAGCTTCG 60.067 52.381 0.00 0.00 44.07 3.79
2361 7693 1.646189 GAGAAGTGCCTAAGCTTCGG 58.354 55.000 12.62 12.62 44.07 4.30
2362 7694 0.977395 AGAAGTGCCTAAGCTTCGGT 59.023 50.000 17.60 0.00 44.07 4.69
2363 7695 1.079503 GAAGTGCCTAAGCTTCGGTG 58.920 55.000 17.60 0.00 40.80 4.94
2364 7696 0.685097 AAGTGCCTAAGCTTCGGTGA 59.315 50.000 17.60 3.18 40.80 4.02
2365 7697 0.247736 AGTGCCTAAGCTTCGGTGAG 59.752 55.000 17.60 2.63 40.80 3.51
2366 7698 0.741221 GTGCCTAAGCTTCGGTGAGG 60.741 60.000 17.60 12.66 40.80 3.86
2367 7699 1.153349 GCCTAAGCTTCGGTGAGGG 60.153 63.158 17.60 4.98 35.50 4.30
2368 7700 1.522569 CCTAAGCTTCGGTGAGGGG 59.477 63.158 0.00 0.00 0.00 4.79
2369 7701 1.153349 CTAAGCTTCGGTGAGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
2370 7702 2.595009 CTAAGCTTCGGTGAGGGGCC 62.595 65.000 0.00 0.00 0.00 5.80
2372 7704 4.344865 GCTTCGGTGAGGGGCCAA 62.345 66.667 4.39 0.00 0.00 4.52
2373 7705 2.434331 CTTCGGTGAGGGGCCAAA 59.566 61.111 4.39 0.00 0.00 3.28
2374 7706 1.000896 CTTCGGTGAGGGGCCAAAT 60.001 57.895 4.39 0.00 0.00 2.32
2375 7707 1.001393 TTCGGTGAGGGGCCAAATC 60.001 57.895 4.39 0.02 0.00 2.17
2376 7708 1.784301 TTCGGTGAGGGGCCAAATCA 61.784 55.000 4.39 3.20 0.00 2.57
2377 7709 2.046285 CGGTGAGGGGCCAAATCAC 61.046 63.158 21.13 21.13 42.07 3.06
2378 7710 1.076549 GGTGAGGGGCCAAATCACA 59.923 57.895 26.81 5.96 44.08 3.58
2379 7711 0.324645 GGTGAGGGGCCAAATCACAT 60.325 55.000 26.81 0.00 44.08 3.21
2380 7712 1.560505 GTGAGGGGCCAAATCACATT 58.439 50.000 23.16 0.00 42.30 2.71
2381 7713 2.622977 GGTGAGGGGCCAAATCACATTA 60.623 50.000 26.81 0.00 44.08 1.90
2382 7714 3.299503 GTGAGGGGCCAAATCACATTAT 58.700 45.455 23.16 0.00 42.30 1.28
2383 7715 3.068590 GTGAGGGGCCAAATCACATTATG 59.931 47.826 23.16 0.00 42.30 1.90
2384 7716 3.299503 GAGGGGCCAAATCACATTATGT 58.700 45.455 4.39 0.00 0.00 2.29
2385 7717 3.706086 GAGGGGCCAAATCACATTATGTT 59.294 43.478 4.39 0.00 0.00 2.71
2386 7718 3.451902 AGGGGCCAAATCACATTATGTTG 59.548 43.478 4.39 0.00 0.00 3.33
2387 7719 3.432046 GGGGCCAAATCACATTATGTTGG 60.432 47.826 4.39 8.89 0.00 3.77
2388 7720 3.450457 GGGCCAAATCACATTATGTTGGA 59.550 43.478 15.59 3.32 0.00 3.53
2389 7721 4.441913 GGGCCAAATCACATTATGTTGGAG 60.442 45.833 15.59 0.00 0.00 3.86
2390 7722 4.160252 GGCCAAATCACATTATGTTGGAGT 59.840 41.667 15.59 0.00 0.00 3.85
2391 7723 5.343249 GCCAAATCACATTATGTTGGAGTC 58.657 41.667 15.59 0.00 0.00 3.36
2392 7724 5.126061 GCCAAATCACATTATGTTGGAGTCT 59.874 40.000 15.59 0.00 0.00 3.24
2393 7725 6.678900 GCCAAATCACATTATGTTGGAGTCTC 60.679 42.308 15.59 0.00 0.00 3.36
2394 7726 6.457392 CCAAATCACATTATGTTGGAGTCTCG 60.457 42.308 7.77 0.00 0.00 4.04
2395 7727 5.598416 ATCACATTATGTTGGAGTCTCGA 57.402 39.130 0.00 0.00 0.00 4.04
2396 7728 4.744570 TCACATTATGTTGGAGTCTCGAC 58.255 43.478 0.00 0.00 0.00 4.20
2397 7729 4.462834 TCACATTATGTTGGAGTCTCGACT 59.537 41.667 0.00 0.00 45.84 4.18
2406 7738 2.573920 AGTCTCGACTCTTGAGGCC 58.426 57.895 0.00 0.00 38.87 5.19
2407 7739 0.251386 AGTCTCGACTCTTGAGGCCA 60.251 55.000 5.01 0.00 38.87 5.36
2408 7740 0.820871 GTCTCGACTCTTGAGGCCAT 59.179 55.000 5.01 0.00 31.90 4.40
2409 7741 1.107114 TCTCGACTCTTGAGGCCATC 58.893 55.000 5.01 0.00 34.19 3.51
2410 7742 1.110442 CTCGACTCTTGAGGCCATCT 58.890 55.000 5.01 0.00 0.00 2.90
2411 7743 0.820226 TCGACTCTTGAGGCCATCTG 59.180 55.000 5.01 0.00 0.00 2.90
2412 7744 0.809241 CGACTCTTGAGGCCATCTGC 60.809 60.000 5.01 0.00 40.16 4.26
2413 7745 0.540923 GACTCTTGAGGCCATCTGCT 59.459 55.000 5.01 0.00 40.92 4.24
2414 7746 0.540923 ACTCTTGAGGCCATCTGCTC 59.459 55.000 5.01 0.00 40.92 4.26
2415 7747 0.831966 CTCTTGAGGCCATCTGCTCT 59.168 55.000 5.01 0.00 40.92 4.09
2416 7748 0.540454 TCTTGAGGCCATCTGCTCTG 59.460 55.000 5.01 0.00 40.92 3.35
2417 7749 0.540454 CTTGAGGCCATCTGCTCTGA 59.460 55.000 5.01 0.00 40.92 3.27
2418 7750 0.986527 TTGAGGCCATCTGCTCTGAA 59.013 50.000 5.01 0.00 40.92 3.02
2419 7751 1.210538 TGAGGCCATCTGCTCTGAAT 58.789 50.000 5.01 0.00 40.92 2.57
2420 7752 1.562942 TGAGGCCATCTGCTCTGAATT 59.437 47.619 5.01 0.00 40.92 2.17
2421 7753 2.220313 GAGGCCATCTGCTCTGAATTC 58.780 52.381 5.01 0.00 40.92 2.17
2422 7754 1.133853 AGGCCATCTGCTCTGAATTCC 60.134 52.381 5.01 0.00 40.92 3.01
2423 7755 1.316651 GCCATCTGCTCTGAATTCCC 58.683 55.000 2.27 0.00 36.87 3.97
2448 7780 1.372501 ACTAACCCATCCTTGGCAGT 58.627 50.000 0.00 0.00 42.15 4.40
2520 7852 4.021016 CCAGACCTCAACTTGCTTAGTACT 60.021 45.833 0.00 0.00 35.54 2.73
2522 7854 4.221041 AGACCTCAACTTGCTTAGTACTCC 59.779 45.833 0.00 0.00 35.54 3.85
2523 7855 3.261137 ACCTCAACTTGCTTAGTACTCCC 59.739 47.826 0.00 0.00 35.54 4.30
2524 7856 3.515901 CCTCAACTTGCTTAGTACTCCCT 59.484 47.826 0.00 0.00 35.54 4.20
2525 7857 4.382147 CCTCAACTTGCTTAGTACTCCCTC 60.382 50.000 0.00 0.00 35.54 4.30
2529 7861 4.931914 ACTTGCTTAGTACTCCCTCTGTA 58.068 43.478 0.00 0.00 34.56 2.74
2530 7862 5.331069 ACTTGCTTAGTACTCCCTCTGTAA 58.669 41.667 0.00 0.00 34.56 2.41
2531 7863 5.778750 ACTTGCTTAGTACTCCCTCTGTAAA 59.221 40.000 0.00 0.00 34.56 2.01
2532 7864 5.656213 TGCTTAGTACTCCCTCTGTAAAC 57.344 43.478 0.00 0.00 0.00 2.01
2533 7865 5.331069 TGCTTAGTACTCCCTCTGTAAACT 58.669 41.667 0.00 0.00 0.00 2.66
2535 7867 7.124052 TGCTTAGTACTCCCTCTGTAAACTAT 58.876 38.462 0.00 0.00 0.00 2.12
2536 7868 7.618512 TGCTTAGTACTCCCTCTGTAAACTATT 59.381 37.037 0.00 0.00 0.00 1.73
2544 7876 8.862085 ACTCCCTCTGTAAACTATTATAAGAGC 58.138 37.037 7.03 0.00 35.46 4.09
2545 7877 8.777578 TCCCTCTGTAAACTATTATAAGAGCA 57.222 34.615 7.03 0.00 35.46 4.26
2565 7897 8.659925 AGAGCATTTAGATCATCAAAGTAGTG 57.340 34.615 0.00 0.00 34.30 2.74
2566 7898 8.481314 AGAGCATTTAGATCATCAAAGTAGTGA 58.519 33.333 0.00 0.00 34.30 3.41
2575 7907 6.887376 TCATCAAAGTAGTGATCTAAACGC 57.113 37.500 0.00 0.00 36.04 4.84
2578 7910 6.268825 TCAAAGTAGTGATCTAAACGCTCT 57.731 37.500 0.00 0.00 0.00 4.09
2579 7911 6.688578 TCAAAGTAGTGATCTAAACGCTCTT 58.311 36.000 0.00 0.00 0.00 2.85
2642 8022 8.991243 ATCATCAAAAACAGATGTTTGGTATG 57.009 30.769 11.47 13.49 46.47 2.39
2678 8058 0.950555 TGTCACCGAATGAGCTGTGC 60.951 55.000 0.00 0.00 38.28 4.57
2709 8089 5.308014 TGATTATTACACCTGCCATGCTAG 58.692 41.667 0.00 0.00 0.00 3.42
2714 8094 0.254178 CACCTGCCATGCTAGTCCTT 59.746 55.000 0.00 0.00 0.00 3.36
2715 8095 0.254178 ACCTGCCATGCTAGTCCTTG 59.746 55.000 0.00 0.00 0.00 3.61
2716 8096 1.099879 CCTGCCATGCTAGTCCTTGC 61.100 60.000 0.00 0.00 0.00 4.01
2717 8097 0.393402 CTGCCATGCTAGTCCTTGCA 60.393 55.000 5.92 5.92 44.51 4.08
2718 8098 0.393402 TGCCATGCTAGTCCTTGCAG 60.393 55.000 9.17 0.00 43.74 4.41
2719 8099 0.107508 GCCATGCTAGTCCTTGCAGA 60.108 55.000 9.17 0.00 43.74 4.26
2720 8100 1.476471 GCCATGCTAGTCCTTGCAGAT 60.476 52.381 9.17 0.00 43.74 2.90
2721 8101 2.219458 CCATGCTAGTCCTTGCAGATG 58.781 52.381 9.17 4.06 43.74 2.90
2722 8102 2.158856 CCATGCTAGTCCTTGCAGATGA 60.159 50.000 9.17 0.00 43.74 2.92
2723 8103 3.496337 CCATGCTAGTCCTTGCAGATGAT 60.496 47.826 9.17 0.00 43.74 2.45
2724 8104 3.920231 TGCTAGTCCTTGCAGATGATT 57.080 42.857 0.00 0.00 36.48 2.57
2725 8105 4.226427 TGCTAGTCCTTGCAGATGATTT 57.774 40.909 0.00 0.00 36.48 2.17
2726 8106 4.194640 TGCTAGTCCTTGCAGATGATTTC 58.805 43.478 0.00 0.00 36.48 2.17
2727 8107 3.247173 GCTAGTCCTTGCAGATGATTTCG 59.753 47.826 0.00 0.00 0.00 3.46
2728 8108 2.636830 AGTCCTTGCAGATGATTTCGG 58.363 47.619 0.00 0.00 0.00 4.30
2729 8109 2.026822 AGTCCTTGCAGATGATTTCGGT 60.027 45.455 0.00 0.00 0.00 4.69
2730 8110 2.096496 GTCCTTGCAGATGATTTCGGTG 59.904 50.000 0.00 0.00 0.00 4.94
2731 8111 2.086869 CCTTGCAGATGATTTCGGTGT 58.913 47.619 0.00 0.00 0.00 4.16
2732 8112 2.489329 CCTTGCAGATGATTTCGGTGTT 59.511 45.455 0.00 0.00 0.00 3.32
2733 8113 3.689161 CCTTGCAGATGATTTCGGTGTTA 59.311 43.478 0.00 0.00 0.00 2.41
2734 8114 4.437390 CCTTGCAGATGATTTCGGTGTTAC 60.437 45.833 0.00 0.00 0.00 2.50
2735 8115 3.937814 TGCAGATGATTTCGGTGTTACT 58.062 40.909 0.00 0.00 0.00 2.24
2736 8116 3.684305 TGCAGATGATTTCGGTGTTACTG 59.316 43.478 0.00 0.00 0.00 2.74
2737 8117 3.684788 GCAGATGATTTCGGTGTTACTGT 59.315 43.478 0.00 0.00 0.00 3.55
2738 8118 4.868171 GCAGATGATTTCGGTGTTACTGTA 59.132 41.667 0.00 0.00 0.00 2.74
2739 8119 5.005779 GCAGATGATTTCGGTGTTACTGTAG 59.994 44.000 0.00 0.00 0.00 2.74
2740 8120 5.520288 CAGATGATTTCGGTGTTACTGTAGG 59.480 44.000 0.00 0.00 0.00 3.18
2741 8121 4.877378 TGATTTCGGTGTTACTGTAGGT 57.123 40.909 0.00 0.00 0.00 3.08
2742 8122 4.562082 TGATTTCGGTGTTACTGTAGGTG 58.438 43.478 0.00 0.00 0.00 4.00
2743 8123 4.281435 TGATTTCGGTGTTACTGTAGGTGA 59.719 41.667 0.00 0.00 0.00 4.02
2744 8124 4.877378 TTTCGGTGTTACTGTAGGTGAT 57.123 40.909 0.00 0.00 0.00 3.06
2745 8125 4.877378 TTCGGTGTTACTGTAGGTGATT 57.123 40.909 0.00 0.00 0.00 2.57
2746 8126 5.981088 TTCGGTGTTACTGTAGGTGATTA 57.019 39.130 0.00 0.00 0.00 1.75
2747 8127 5.571784 TCGGTGTTACTGTAGGTGATTAG 57.428 43.478 0.00 0.00 0.00 1.73
2748 8128 4.400251 TCGGTGTTACTGTAGGTGATTAGG 59.600 45.833 0.00 0.00 0.00 2.69
2749 8129 4.439968 GGTGTTACTGTAGGTGATTAGGC 58.560 47.826 0.00 0.00 0.00 3.93
2750 8130 4.110482 GTGTTACTGTAGGTGATTAGGCG 58.890 47.826 0.00 0.00 0.00 5.52
2751 8131 3.131577 TGTTACTGTAGGTGATTAGGCGG 59.868 47.826 0.00 0.00 0.00 6.13
2752 8132 1.120530 ACTGTAGGTGATTAGGCGGG 58.879 55.000 0.00 0.00 0.00 6.13
2753 8133 0.393077 CTGTAGGTGATTAGGCGGGG 59.607 60.000 0.00 0.00 0.00 5.73
2754 8134 1.070957 GTAGGTGATTAGGCGGGGC 59.929 63.158 0.00 0.00 0.00 5.80
2755 8135 2.504274 TAGGTGATTAGGCGGGGCG 61.504 63.158 0.00 0.00 0.00 6.13
2756 8136 4.929707 GGTGATTAGGCGGGGCGG 62.930 72.222 0.00 0.00 0.00 6.13
2757 8137 4.171103 GTGATTAGGCGGGGCGGT 62.171 66.667 0.00 0.00 0.00 5.68
2758 8138 3.404438 TGATTAGGCGGGGCGGTT 61.404 61.111 0.00 0.00 0.00 4.44
2759 8139 2.900337 GATTAGGCGGGGCGGTTG 60.900 66.667 0.00 0.00 0.00 3.77
2769 8149 4.143333 GGCGGTTGCTCGAGCCTA 62.143 66.667 33.23 19.24 45.67 3.93
2770 8150 2.125673 GCGGTTGCTCGAGCCTAA 60.126 61.111 33.23 19.78 41.18 2.69
2771 8151 1.521681 GCGGTTGCTCGAGCCTAAT 60.522 57.895 33.23 0.00 41.18 1.73
2772 8152 1.766143 GCGGTTGCTCGAGCCTAATG 61.766 60.000 33.23 19.80 41.18 1.90
2773 8153 1.766143 CGGTTGCTCGAGCCTAATGC 61.766 60.000 33.23 16.20 41.18 3.56
2783 8163 2.618165 GCCTAATGCTTAGTCGGGC 58.382 57.895 0.00 0.00 36.87 6.13
2784 8164 0.106894 GCCTAATGCTTAGTCGGGCT 59.893 55.000 0.00 0.00 36.87 5.19
2785 8165 1.343465 GCCTAATGCTTAGTCGGGCTA 59.657 52.381 0.00 0.00 36.87 3.93
2786 8166 2.028020 GCCTAATGCTTAGTCGGGCTAT 60.028 50.000 0.00 0.00 36.87 2.97
2787 8167 3.589988 CCTAATGCTTAGTCGGGCTATG 58.410 50.000 0.00 0.00 0.00 2.23
2788 8168 3.006967 CCTAATGCTTAGTCGGGCTATGT 59.993 47.826 4.70 0.00 0.00 2.29
2789 8169 2.533266 ATGCTTAGTCGGGCTATGTG 57.467 50.000 4.70 0.00 0.00 3.21
2790 8170 1.191535 TGCTTAGTCGGGCTATGTGT 58.808 50.000 4.70 0.00 0.00 3.72
2791 8171 1.553248 TGCTTAGTCGGGCTATGTGTT 59.447 47.619 4.70 0.00 0.00 3.32
2792 8172 1.933853 GCTTAGTCGGGCTATGTGTTG 59.066 52.381 4.70 0.00 0.00 3.33
2793 8173 2.550978 CTTAGTCGGGCTATGTGTTGG 58.449 52.381 0.00 0.00 0.00 3.77
2794 8174 0.177141 TAGTCGGGCTATGTGTTGGC 59.823 55.000 0.00 0.00 0.00 4.52
2795 8175 2.112815 GTCGGGCTATGTGTTGGCC 61.113 63.158 0.00 0.00 44.59 5.36
2797 8177 4.684623 GGGCTATGTGTTGGCCAT 57.315 55.556 6.09 0.00 46.87 4.40
2798 8178 2.900547 GGGCTATGTGTTGGCCATT 58.099 52.632 6.09 0.00 46.87 3.16
2799 8179 1.194218 GGGCTATGTGTTGGCCATTT 58.806 50.000 6.09 0.00 46.87 2.32
2800 8180 1.136891 GGGCTATGTGTTGGCCATTTC 59.863 52.381 6.09 0.54 46.87 2.17
2801 8181 1.136891 GGCTATGTGTTGGCCATTTCC 59.863 52.381 6.09 0.00 44.69 3.13
2802 8182 1.824230 GCTATGTGTTGGCCATTTCCA 59.176 47.619 6.09 1.20 0.00 3.53
2803 8183 2.233431 GCTATGTGTTGGCCATTTCCAA 59.767 45.455 6.09 0.00 43.36 3.53
2804 8184 3.306641 GCTATGTGTTGGCCATTTCCAAA 60.307 43.478 6.09 0.00 46.63 3.28
2805 8185 3.853355 ATGTGTTGGCCATTTCCAAAA 57.147 38.095 6.09 0.00 46.63 2.44
2806 8186 3.853355 TGTGTTGGCCATTTCCAAAAT 57.147 38.095 6.09 0.00 46.63 1.82
2807 8187 3.474600 TGTGTTGGCCATTTCCAAAATG 58.525 40.909 6.09 5.60 46.63 2.32
2808 8188 3.118112 TGTGTTGGCCATTTCCAAAATGT 60.118 39.130 6.09 0.00 46.63 2.71
2809 8189 3.250521 GTGTTGGCCATTTCCAAAATGTG 59.749 43.478 6.09 4.77 46.63 3.21
2810 8190 3.118112 TGTTGGCCATTTCCAAAATGTGT 60.118 39.130 6.09 0.00 46.63 3.72
2811 8191 3.853355 TGGCCATTTCCAAAATGTGTT 57.147 38.095 0.00 0.00 32.18 3.32
2812 8192 3.474600 TGGCCATTTCCAAAATGTGTTG 58.525 40.909 0.00 0.00 32.18 3.33
2813 8193 7.220178 GTTGGCCATTTCCAAAATGTGTTGG 62.220 44.000 6.09 0.00 46.63 3.77
2814 8194 2.226200 GCCATTTCCAAAATGTGTTGGC 59.774 45.455 10.55 5.29 46.56 4.52
2815 8195 2.813172 CCATTTCCAAAATGTGTTGGCC 59.187 45.455 0.00 0.00 46.56 5.36
2816 8196 3.496515 CCATTTCCAAAATGTGTTGGCCT 60.497 43.478 3.32 0.00 46.56 5.19
2817 8197 3.922171 TTTCCAAAATGTGTTGGCCTT 57.078 38.095 3.32 0.00 46.56 4.35
2818 8198 3.922171 TTCCAAAATGTGTTGGCCTTT 57.078 38.095 3.32 0.00 46.56 3.11
2819 8199 3.922171 TCCAAAATGTGTTGGCCTTTT 57.078 38.095 3.32 0.00 46.56 2.27
2820 8200 5.359194 TTCCAAAATGTGTTGGCCTTTTA 57.641 34.783 3.32 0.00 46.56 1.52
2821 8201 5.559148 TCCAAAATGTGTTGGCCTTTTAT 57.441 34.783 3.32 0.00 46.56 1.40
2822 8202 6.672266 TCCAAAATGTGTTGGCCTTTTATA 57.328 33.333 3.32 0.00 46.56 0.98
2823 8203 7.067496 TCCAAAATGTGTTGGCCTTTTATAA 57.933 32.000 3.32 0.00 46.56 0.98
2824 8204 6.931840 TCCAAAATGTGTTGGCCTTTTATAAC 59.068 34.615 3.32 0.00 46.56 1.89
2825 8205 6.708054 CCAAAATGTGTTGGCCTTTTATAACA 59.292 34.615 3.32 1.44 41.63 2.41
2826 8206 7.095271 CCAAAATGTGTTGGCCTTTTATAACAG 60.095 37.037 3.32 0.00 41.63 3.16
2827 8207 6.664428 AATGTGTTGGCCTTTTATAACAGT 57.336 33.333 3.32 0.00 34.11 3.55
2828 8208 5.446143 TGTGTTGGCCTTTTATAACAGTG 57.554 39.130 3.32 0.00 34.11 3.66
2829 8209 5.133941 TGTGTTGGCCTTTTATAACAGTGA 58.866 37.500 3.32 0.00 34.11 3.41
2830 8210 5.240623 TGTGTTGGCCTTTTATAACAGTGAG 59.759 40.000 3.32 0.00 34.11 3.51
2831 8211 5.240844 GTGTTGGCCTTTTATAACAGTGAGT 59.759 40.000 3.32 0.00 34.11 3.41
2832 8212 5.830991 TGTTGGCCTTTTATAACAGTGAGTT 59.169 36.000 3.32 0.00 44.27 3.01
2833 8213 6.322712 TGTTGGCCTTTTATAACAGTGAGTTT 59.677 34.615 3.32 0.00 41.64 2.66
2834 8214 7.502895 TGTTGGCCTTTTATAACAGTGAGTTTA 59.497 33.333 3.32 0.00 41.64 2.01
2835 8215 8.354426 GTTGGCCTTTTATAACAGTGAGTTTAA 58.646 33.333 3.32 0.00 41.64 1.52
2836 8216 8.106247 TGGCCTTTTATAACAGTGAGTTTAAG 57.894 34.615 3.32 0.00 41.64 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.515952 CTCGAGCGAGTGAAGCTGG 60.516 63.158 11.50 0.00 46.13 4.85
31 32 1.299773 GGCAAGATCCTCGAGCGAG 60.300 63.158 6.99 12.66 41.63 5.03
41 42 4.132336 TCAGCATCACTTATGGCAAGATC 58.868 43.478 0.00 0.00 35.99 2.75
46 47 3.382227 CCAAATCAGCATCACTTATGGCA 59.618 43.478 0.00 0.00 35.99 4.92
48 49 5.587388 AACCAAATCAGCATCACTTATGG 57.413 39.130 0.00 0.00 35.99 2.74
111 113 1.200519 TCCTTCCAGGAACATACCGG 58.799 55.000 0.00 0.00 42.51 5.28
182 185 0.844503 GTCGCCTACGCTGAAATACG 59.155 55.000 0.00 0.00 39.84 3.06
198 201 6.293407 GGATGGTACCATTGATATTGTTGTCG 60.293 42.308 27.97 0.00 36.70 4.35
256 259 4.678509 TGTTTGCAACATCGAATACCTC 57.321 40.909 0.00 0.00 36.25 3.85
282 429 4.210331 GTGATGGGATGTTTCCAGCTAAT 58.790 43.478 0.00 0.00 44.60 1.73
293 440 1.841919 TGCTGATCTGTGATGGGATGT 59.158 47.619 1.27 0.00 0.00 3.06
323 470 5.419155 CCGGAGAGGCTGAGAATATATAACA 59.581 44.000 0.00 0.00 0.00 2.41
373 520 1.341285 TGGCATGTTTCCCATCTCCAG 60.341 52.381 0.00 0.00 31.64 3.86
406 553 8.400947 CGTAAGATGATTCTTTGACAAATCCAT 58.599 33.333 0.05 3.20 42.29 3.41
426 573 4.712829 TGAGATGGTATTGTTCCCGTAAGA 59.287 41.667 0.00 0.00 43.02 2.10
432 579 5.178797 CCGATATGAGATGGTATTGTTCCC 58.821 45.833 0.00 0.00 0.00 3.97
469 616 5.106197 TGGCACTGATGTCAATGAAATACAC 60.106 40.000 0.00 0.00 37.55 2.90
518 665 2.380064 TGCCAACAAGGAGATGGTTT 57.620 45.000 0.00 0.00 41.93 3.27
536 683 6.370994 AGACAAGTTGAGAACAGCAAGATATG 59.629 38.462 10.54 0.00 0.00 1.78
538 685 5.698089 CAGACAAGTTGAGAACAGCAAGATA 59.302 40.000 10.54 0.00 0.00 1.98
545 692 2.564771 TGCCAGACAAGTTGAGAACAG 58.435 47.619 10.54 0.00 0.00 3.16
577 724 6.610456 TGTTGTCGACGTTAGTAATGATACA 58.390 36.000 11.62 6.90 34.29 2.29
586 733 2.124903 CTGCTTGTTGTCGACGTTAGT 58.875 47.619 11.62 0.00 0.00 2.24
625 772 3.760684 CCAAAGAAGCTGCTATTCTTGGT 59.239 43.478 15.28 1.02 44.25 3.67
666 822 4.884668 TTGGAGACTGGTTAGGTTACAG 57.115 45.455 0.00 0.00 38.19 2.74
759 915 1.186200 TGGTCGACAGATCCAAGGAG 58.814 55.000 18.91 0.00 0.00 3.69
769 925 1.666888 GGCAAAAGCATTGGTCGACAG 60.667 52.381 18.91 5.06 0.00 3.51
776 932 1.825281 TTCCCCGGCAAAAGCATTGG 61.825 55.000 0.00 0.00 0.00 3.16
789 945 1.375523 CGAGGTTGGAACTTCCCCG 60.376 63.158 5.30 0.00 35.03 5.73
852 1011 3.882888 CTGGAAAGCAACCTGTGAAGTTA 59.117 43.478 0.00 0.00 0.00 2.24
891 1050 9.717942 CCCAGATCCAAAATAACAATGTTTTTA 57.282 29.630 3.17 0.00 28.63 1.52
898 1057 6.022315 TGTTCCCCAGATCCAAAATAACAAT 58.978 36.000 0.00 0.00 0.00 2.71
915 1074 3.428862 CGCCAAACATCTTATTGTTCCCC 60.429 47.826 0.00 0.00 38.85 4.81
932 1091 4.555709 ACGGTGGAAGTGCGCCAA 62.556 61.111 4.18 0.00 37.12 4.52
945 1104 0.912487 TGCTTTCCCCTATCCACGGT 60.912 55.000 0.00 0.00 0.00 4.83
978 1137 4.728772 TGTTTGATCACAGTCCAAGGATT 58.271 39.130 0.00 0.00 0.00 3.01
991 1150 9.685276 AATACTTCCATAGAACATGTTTGATCA 57.315 29.630 13.36 0.00 0.00 2.92
1047 1206 4.541973 TTCAGCTAGATCAAGCAGTTGA 57.458 40.909 0.00 0.00 46.81 3.18
1292 1451 4.821805 TCAACTCTGAAGGAATTTCACCAC 59.178 41.667 0.00 0.00 40.82 4.16
1302 1461 7.303182 TCTAAGATTTGTCAACTCTGAAGGA 57.697 36.000 6.23 1.40 31.88 3.36
1345 1504 7.989741 ACCACCAGATAGATAATTTCTTGACAG 59.010 37.037 0.00 0.00 35.79 3.51
1459 1618 6.214412 AGAGAGGTGAGGAATATCAAGTTTGT 59.786 38.462 0.00 0.00 0.00 2.83
1478 1637 5.126384 AGGTTGTTCGAGAGATTAAGAGAGG 59.874 44.000 0.00 0.00 41.60 3.69
1515 1674 3.019564 GAGTTGATTGCCTGCAGGTATT 58.980 45.455 32.81 24.69 37.57 1.89
1522 1681 1.340889 TGTTTGGAGTTGATTGCCTGC 59.659 47.619 0.00 0.00 0.00 4.85
1550 1709 5.011023 AGGTTATTGCTATAAATTGCAGGGC 59.989 40.000 2.05 0.00 39.49 5.19
1554 1713 6.040391 GTCCCAGGTTATTGCTATAAATTGCA 59.960 38.462 2.05 0.00 36.78 4.08
1555 1714 6.265422 AGTCCCAGGTTATTGCTATAAATTGC 59.735 38.462 2.05 0.00 0.00 3.56
1666 1843 2.497675 TCCCAGCAATCACTGAGTAGTC 59.502 50.000 0.00 0.00 40.25 2.59
1686 1863 5.507315 CCATAACCACAAACCAGAAACTGTC 60.507 44.000 0.00 0.00 0.00 3.51
1732 1909 2.134346 GAAAGCGCATCTCCAGATCTC 58.866 52.381 11.47 0.00 31.21 2.75
1746 1923 4.585364 CATCTATGCAACTCAAGAAAGCG 58.415 43.478 0.00 0.00 0.00 4.68
1929 4819 4.609995 CGATGCCGGTTACTTGGT 57.390 55.556 1.90 0.00 0.00 3.67
1940 4830 0.734889 CATGACAGAAACCCGATGCC 59.265 55.000 0.00 0.00 0.00 4.40
1965 4855 9.777008 ATGTTTACTTATATTCAGGGGGAAAAA 57.223 29.630 0.00 0.00 39.39 1.94
1990 4882 7.912204 ACCATTACCCTGACCCAATCTATATAT 59.088 37.037 0.00 0.00 0.00 0.86
1992 4884 6.098446 ACCATTACCCTGACCCAATCTATAT 58.902 40.000 0.00 0.00 0.00 0.86
1997 4889 3.382083 AACCATTACCCTGACCCAATC 57.618 47.619 0.00 0.00 0.00 2.67
2001 4893 4.079958 AGACATAAACCATTACCCTGACCC 60.080 45.833 0.00 0.00 0.00 4.46
2002 4894 5.112129 AGACATAAACCATTACCCTGACC 57.888 43.478 0.00 0.00 0.00 4.02
2079 4973 1.810151 GGGAAAATCAAGCGCAGTACA 59.190 47.619 11.47 0.00 0.00 2.90
2080 4974 2.084546 AGGGAAAATCAAGCGCAGTAC 58.915 47.619 11.47 0.00 0.00 2.73
2086 4980 5.371115 TGAACTAAAGGGAAAATCAAGCG 57.629 39.130 0.00 0.00 0.00 4.68
2101 4995 3.391296 ACTGCTCTTCAACCCTGAACTAA 59.609 43.478 0.00 0.00 36.62 2.24
2103 4997 1.771255 ACTGCTCTTCAACCCTGAACT 59.229 47.619 0.00 0.00 36.62 3.01
2107 5001 5.091261 ACTTATACTGCTCTTCAACCCTG 57.909 43.478 0.00 0.00 0.00 4.45
2110 5004 8.468399 AGTACTAACTTATACTGCTCTTCAACC 58.532 37.037 0.00 0.00 29.00 3.77
2140 5034 4.811555 TCGTTGGCATTTCAGTATATGC 57.188 40.909 0.00 0.00 44.93 3.14
2178 5072 3.667360 GCCAAAGAATTCAGGTGCAAAT 58.333 40.909 8.44 0.00 0.00 2.32
2216 5110 8.562635 ACTTGCTTATAGTAAATTAAAGGGGGA 58.437 33.333 0.00 0.00 0.00 4.81
2252 5309 8.630917 TGTGATACTAGCACTTCTTAGTATTCC 58.369 37.037 6.05 2.14 36.29 3.01
2259 5316 9.678941 CGATTAATGTGATACTAGCACTTCTTA 57.321 33.333 6.05 0.08 37.18 2.10
2260 5317 7.653713 CCGATTAATGTGATACTAGCACTTCTT 59.346 37.037 6.05 0.88 37.18 2.52
2262 5319 6.924060 ACCGATTAATGTGATACTAGCACTTC 59.076 38.462 6.05 0.00 37.18 3.01
2272 7603 9.004717 TCTGAAAAACAACCGATTAATGTGATA 57.995 29.630 0.00 0.00 0.00 2.15
2327 7659 4.262938 GCACTTCTCCACTACCCTTTTAGT 60.263 45.833 0.00 0.00 32.16 2.24
2331 7663 1.351350 GGCACTTCTCCACTACCCTTT 59.649 52.381 0.00 0.00 0.00 3.11
2333 7665 0.117340 AGGCACTTCTCCACTACCCT 59.883 55.000 0.00 0.00 27.25 4.34
2335 7667 2.418884 GCTTAGGCACTTCTCCACTACC 60.419 54.545 0.00 0.00 41.75 3.18
2336 7668 2.498078 AGCTTAGGCACTTCTCCACTAC 59.502 50.000 0.00 0.00 41.75 2.73
2337 7669 2.821437 AGCTTAGGCACTTCTCCACTA 58.179 47.619 0.00 0.00 41.75 2.74
2338 7670 1.650528 AGCTTAGGCACTTCTCCACT 58.349 50.000 0.00 0.00 41.75 4.00
2339 7671 2.351455 GAAGCTTAGGCACTTCTCCAC 58.649 52.381 0.00 0.00 41.75 4.02
2341 7673 1.646189 CGAAGCTTAGGCACTTCTCC 58.354 55.000 0.00 0.00 40.12 3.71
2342 7674 1.066787 ACCGAAGCTTAGGCACTTCTC 60.067 52.381 23.92 0.00 40.12 2.87
2343 7675 0.977395 ACCGAAGCTTAGGCACTTCT 59.023 50.000 23.92 1.98 40.12 2.85
2344 7676 1.079503 CACCGAAGCTTAGGCACTTC 58.920 55.000 23.92 0.00 41.75 3.01
2345 7677 0.685097 TCACCGAAGCTTAGGCACTT 59.315 50.000 23.92 3.10 41.75 3.16
2346 7678 0.247736 CTCACCGAAGCTTAGGCACT 59.752 55.000 23.92 3.47 46.37 4.40
2347 7679 0.741221 CCTCACCGAAGCTTAGGCAC 60.741 60.000 23.92 0.00 41.70 5.01
2348 7680 1.596934 CCTCACCGAAGCTTAGGCA 59.403 57.895 23.92 11.02 41.70 4.75
2349 7681 1.153349 CCCTCACCGAAGCTTAGGC 60.153 63.158 23.92 0.00 39.06 3.93
2350 7682 1.522569 CCCCTCACCGAAGCTTAGG 59.477 63.158 22.60 22.60 0.00 2.69
2351 7683 1.153349 GCCCCTCACCGAAGCTTAG 60.153 63.158 0.00 0.00 0.00 2.18
2352 7684 2.666098 GGCCCCTCACCGAAGCTTA 61.666 63.158 0.00 0.00 0.00 3.09
2353 7685 4.035102 GGCCCCTCACCGAAGCTT 62.035 66.667 0.00 0.00 0.00 3.74
2355 7687 3.860930 TTTGGCCCCTCACCGAAGC 62.861 63.158 0.00 0.00 0.00 3.86
2356 7688 1.000896 ATTTGGCCCCTCACCGAAG 60.001 57.895 0.00 0.00 34.02 3.79
2357 7689 1.001393 GATTTGGCCCCTCACCGAA 60.001 57.895 0.00 0.00 35.03 4.30
2358 7690 2.227757 TGATTTGGCCCCTCACCGA 61.228 57.895 0.00 0.00 0.00 4.69
2359 7691 2.046285 GTGATTTGGCCCCTCACCG 61.046 63.158 15.16 0.00 34.55 4.94
2360 7692 0.324645 ATGTGATTTGGCCCCTCACC 60.325 55.000 20.48 8.52 38.79 4.02
2361 7693 1.560505 AATGTGATTTGGCCCCTCAC 58.439 50.000 17.90 17.90 39.74 3.51
2362 7694 3.298619 CATAATGTGATTTGGCCCCTCA 58.701 45.455 0.00 0.00 0.00 3.86
2363 7695 3.299503 ACATAATGTGATTTGGCCCCTC 58.700 45.455 0.00 0.00 0.00 4.30
2364 7696 3.403228 ACATAATGTGATTTGGCCCCT 57.597 42.857 0.00 0.00 0.00 4.79
2365 7697 3.432046 CCAACATAATGTGATTTGGCCCC 60.432 47.826 0.00 0.00 0.00 5.80
2366 7698 3.450457 TCCAACATAATGTGATTTGGCCC 59.550 43.478 0.00 0.00 0.00 5.80
2367 7699 4.160252 ACTCCAACATAATGTGATTTGGCC 59.840 41.667 0.00 0.00 0.00 5.36
2368 7700 5.126061 AGACTCCAACATAATGTGATTTGGC 59.874 40.000 0.00 0.00 0.00 4.52
2369 7701 6.457392 CGAGACTCCAACATAATGTGATTTGG 60.457 42.308 0.00 0.00 0.00 3.28
2370 7702 6.313658 TCGAGACTCCAACATAATGTGATTTG 59.686 38.462 0.00 0.00 0.00 2.32
2371 7703 6.313905 GTCGAGACTCCAACATAATGTGATTT 59.686 38.462 0.00 0.00 0.00 2.17
2372 7704 5.812642 GTCGAGACTCCAACATAATGTGATT 59.187 40.000 0.00 0.00 0.00 2.57
2373 7705 5.127845 AGTCGAGACTCCAACATAATGTGAT 59.872 40.000 0.00 0.00 36.92 3.06
2374 7706 4.462834 AGTCGAGACTCCAACATAATGTGA 59.537 41.667 0.00 0.00 36.92 3.58
2375 7707 4.748892 AGTCGAGACTCCAACATAATGTG 58.251 43.478 0.00 0.00 36.92 3.21
2388 7720 0.251386 TGGCCTCAAGAGTCGAGACT 60.251 55.000 3.32 5.31 45.84 3.24
2389 7721 0.820871 ATGGCCTCAAGAGTCGAGAC 59.179 55.000 3.32 0.00 31.84 3.36
2390 7722 1.107114 GATGGCCTCAAGAGTCGAGA 58.893 55.000 3.32 0.00 31.84 4.04
2391 7723 1.110442 AGATGGCCTCAAGAGTCGAG 58.890 55.000 3.32 0.00 0.00 4.04
2392 7724 0.820226 CAGATGGCCTCAAGAGTCGA 59.180 55.000 3.32 0.00 0.00 4.20
2393 7725 0.809241 GCAGATGGCCTCAAGAGTCG 60.809 60.000 3.32 0.00 36.11 4.18
2394 7726 0.540923 AGCAGATGGCCTCAAGAGTC 59.459 55.000 3.32 0.00 46.50 3.36
2395 7727 0.540923 GAGCAGATGGCCTCAAGAGT 59.459 55.000 3.32 0.00 46.50 3.24
2396 7728 0.831966 AGAGCAGATGGCCTCAAGAG 59.168 55.000 3.32 0.00 46.50 2.85
2397 7729 0.540454 CAGAGCAGATGGCCTCAAGA 59.460 55.000 3.32 0.00 46.50 3.02
2398 7730 0.540454 TCAGAGCAGATGGCCTCAAG 59.460 55.000 3.32 0.00 46.50 3.02
2399 7731 0.986527 TTCAGAGCAGATGGCCTCAA 59.013 50.000 3.32 0.00 46.50 3.02
2400 7732 1.210538 ATTCAGAGCAGATGGCCTCA 58.789 50.000 3.32 0.00 46.50 3.86
2401 7733 2.220313 GAATTCAGAGCAGATGGCCTC 58.780 52.381 3.32 0.00 46.50 4.70
2402 7734 1.133853 GGAATTCAGAGCAGATGGCCT 60.134 52.381 3.32 0.00 46.50 5.19
2403 7735 1.316651 GGAATTCAGAGCAGATGGCC 58.683 55.000 7.93 0.00 46.50 5.36
2404 7736 1.316651 GGGAATTCAGAGCAGATGGC 58.683 55.000 7.93 0.00 45.30 4.40
2405 7737 2.172082 TCTGGGAATTCAGAGCAGATGG 59.828 50.000 7.93 0.00 38.70 3.51
2406 7738 3.555527 TCTGGGAATTCAGAGCAGATG 57.444 47.619 7.93 0.00 38.70 2.90
2407 7739 4.581309 TTTCTGGGAATTCAGAGCAGAT 57.419 40.909 7.93 0.00 43.64 2.90
2408 7740 4.074970 GTTTTCTGGGAATTCAGAGCAGA 58.925 43.478 7.93 0.00 43.64 4.26
2409 7741 4.077822 AGTTTTCTGGGAATTCAGAGCAG 58.922 43.478 7.93 0.00 43.64 4.24
2410 7742 4.104383 AGTTTTCTGGGAATTCAGAGCA 57.896 40.909 7.93 0.00 43.64 4.26
2411 7743 5.106118 GGTTAGTTTTCTGGGAATTCAGAGC 60.106 44.000 7.93 0.00 43.64 4.09
2412 7744 5.416013 GGGTTAGTTTTCTGGGAATTCAGAG 59.584 44.000 7.93 2.25 43.64 3.35
2413 7745 5.163034 TGGGTTAGTTTTCTGGGAATTCAGA 60.163 40.000 7.93 0.00 41.51 3.27
2414 7746 5.076873 TGGGTTAGTTTTCTGGGAATTCAG 58.923 41.667 7.93 0.00 36.17 3.02
2415 7747 5.068215 TGGGTTAGTTTTCTGGGAATTCA 57.932 39.130 7.93 0.00 0.00 2.57
2416 7748 5.127194 GGATGGGTTAGTTTTCTGGGAATTC 59.873 44.000 0.00 0.00 0.00 2.17
2417 7749 5.023452 GGATGGGTTAGTTTTCTGGGAATT 58.977 41.667 0.00 0.00 0.00 2.17
2418 7750 4.294970 AGGATGGGTTAGTTTTCTGGGAAT 59.705 41.667 0.00 0.00 0.00 3.01
2419 7751 3.660669 AGGATGGGTTAGTTTTCTGGGAA 59.339 43.478 0.00 0.00 0.00 3.97
2420 7752 3.265489 AGGATGGGTTAGTTTTCTGGGA 58.735 45.455 0.00 0.00 0.00 4.37
2421 7753 3.739401 AGGATGGGTTAGTTTTCTGGG 57.261 47.619 0.00 0.00 0.00 4.45
2422 7754 3.763897 CCAAGGATGGGTTAGTTTTCTGG 59.236 47.826 0.00 0.00 43.51 3.86
2448 7780 2.168313 TGACTCTTCACAGTGCTTGACA 59.832 45.455 0.00 0.00 0.00 3.58
2520 7852 8.777578 TGCTCTTATAATAGTTTACAGAGGGA 57.222 34.615 0.42 0.00 32.95 4.20
2540 7872 8.481314 TCACTACTTTGATGATCTAAATGCTCT 58.519 33.333 0.00 0.00 0.00 4.09
2541 7873 8.654230 TCACTACTTTGATGATCTAAATGCTC 57.346 34.615 0.00 0.00 0.00 4.26
2542 7874 9.270640 GATCACTACTTTGATGATCTAAATGCT 57.729 33.333 6.27 0.00 43.55 3.79
2550 7882 7.436673 AGCGTTTAGATCACTACTTTGATGATC 59.563 37.037 5.50 5.50 46.04 2.92
2551 7883 7.268586 AGCGTTTAGATCACTACTTTGATGAT 58.731 34.615 0.00 0.00 36.30 2.45
2552 7884 6.631016 AGCGTTTAGATCACTACTTTGATGA 58.369 36.000 0.00 0.00 36.30 2.92
2556 7888 6.952935 AAGAGCGTTTAGATCACTACTTTG 57.047 37.500 0.00 0.00 37.82 2.77
2573 7905 8.328864 GGTGTGAGTTTTTAGAATATAAGAGCG 58.671 37.037 0.00 0.00 0.00 5.03
2574 7906 8.328864 CGGTGTGAGTTTTTAGAATATAAGAGC 58.671 37.037 0.00 0.00 0.00 4.09
2575 7907 9.582431 TCGGTGTGAGTTTTTAGAATATAAGAG 57.418 33.333 0.00 0.00 0.00 2.85
2578 7910 9.661563 ATGTCGGTGTGAGTTTTTAGAATATAA 57.338 29.630 0.00 0.00 0.00 0.98
2579 7911 9.661563 AATGTCGGTGTGAGTTTTTAGAATATA 57.338 29.630 0.00 0.00 0.00 0.86
2591 7971 1.000955 GGTCAGAATGTCGGTGTGAGT 59.999 52.381 0.00 0.00 37.40 3.41
2642 8022 5.291128 CGGTGACATAGGTGAATAACTGAAC 59.709 44.000 0.00 0.00 0.00 3.18
2678 8058 5.067805 GGCAGGTGTAATAATCAAAGAAGGG 59.932 44.000 0.00 0.00 0.00 3.95
2709 8089 2.096496 CACCGAAATCATCTGCAAGGAC 59.904 50.000 0.00 0.00 0.00 3.85
2714 8094 3.684305 CAGTAACACCGAAATCATCTGCA 59.316 43.478 0.00 0.00 0.00 4.41
2715 8095 3.684788 ACAGTAACACCGAAATCATCTGC 59.315 43.478 0.00 0.00 0.00 4.26
2716 8096 5.520288 CCTACAGTAACACCGAAATCATCTG 59.480 44.000 0.00 0.00 0.00 2.90
2717 8097 5.187186 ACCTACAGTAACACCGAAATCATCT 59.813 40.000 0.00 0.00 0.00 2.90
2718 8098 5.291128 CACCTACAGTAACACCGAAATCATC 59.709 44.000 0.00 0.00 0.00 2.92
2719 8099 5.046878 TCACCTACAGTAACACCGAAATCAT 60.047 40.000 0.00 0.00 0.00 2.45
2720 8100 4.281435 TCACCTACAGTAACACCGAAATCA 59.719 41.667 0.00 0.00 0.00 2.57
2721 8101 4.813027 TCACCTACAGTAACACCGAAATC 58.187 43.478 0.00 0.00 0.00 2.17
2722 8102 4.877378 TCACCTACAGTAACACCGAAAT 57.123 40.909 0.00 0.00 0.00 2.17
2723 8103 4.877378 ATCACCTACAGTAACACCGAAA 57.123 40.909 0.00 0.00 0.00 3.46
2724 8104 4.877378 AATCACCTACAGTAACACCGAA 57.123 40.909 0.00 0.00 0.00 4.30
2725 8105 4.400251 CCTAATCACCTACAGTAACACCGA 59.600 45.833 0.00 0.00 0.00 4.69
2726 8106 4.679662 CCTAATCACCTACAGTAACACCG 58.320 47.826 0.00 0.00 0.00 4.94
2727 8107 4.439968 GCCTAATCACCTACAGTAACACC 58.560 47.826 0.00 0.00 0.00 4.16
2728 8108 4.110482 CGCCTAATCACCTACAGTAACAC 58.890 47.826 0.00 0.00 0.00 3.32
2729 8109 3.131577 CCGCCTAATCACCTACAGTAACA 59.868 47.826 0.00 0.00 0.00 2.41
2730 8110 3.492137 CCCGCCTAATCACCTACAGTAAC 60.492 52.174 0.00 0.00 0.00 2.50
2731 8111 2.696707 CCCGCCTAATCACCTACAGTAA 59.303 50.000 0.00 0.00 0.00 2.24
2732 8112 2.313317 CCCGCCTAATCACCTACAGTA 58.687 52.381 0.00 0.00 0.00 2.74
2733 8113 1.120530 CCCGCCTAATCACCTACAGT 58.879 55.000 0.00 0.00 0.00 3.55
2734 8114 0.393077 CCCCGCCTAATCACCTACAG 59.607 60.000 0.00 0.00 0.00 2.74
2735 8115 1.692173 GCCCCGCCTAATCACCTACA 61.692 60.000 0.00 0.00 0.00 2.74
2736 8116 1.070957 GCCCCGCCTAATCACCTAC 59.929 63.158 0.00 0.00 0.00 3.18
2737 8117 2.504274 CGCCCCGCCTAATCACCTA 61.504 63.158 0.00 0.00 0.00 3.08
2738 8118 3.861797 CGCCCCGCCTAATCACCT 61.862 66.667 0.00 0.00 0.00 4.00
2739 8119 4.929707 CCGCCCCGCCTAATCACC 62.930 72.222 0.00 0.00 0.00 4.02
2740 8120 3.692370 AACCGCCCCGCCTAATCAC 62.692 63.158 0.00 0.00 0.00 3.06
2741 8121 3.404438 AACCGCCCCGCCTAATCA 61.404 61.111 0.00 0.00 0.00 2.57
2742 8122 2.900337 CAACCGCCCCGCCTAATC 60.900 66.667 0.00 0.00 0.00 1.75
2752 8132 2.925162 ATTAGGCTCGAGCAACCGCC 62.925 60.000 36.27 20.54 44.36 6.13
2753 8133 1.521681 ATTAGGCTCGAGCAACCGC 60.522 57.895 36.27 19.91 44.36 5.68
2754 8134 1.766143 GCATTAGGCTCGAGCAACCG 61.766 60.000 36.27 21.30 44.36 4.44
2755 8135 2.017752 GCATTAGGCTCGAGCAACC 58.982 57.895 36.27 20.65 44.36 3.77
2768 8148 3.386726 ACACATAGCCCGACTAAGCATTA 59.613 43.478 0.00 0.00 33.57 1.90
2769 8149 2.170607 ACACATAGCCCGACTAAGCATT 59.829 45.455 0.00 0.00 33.57 3.56
2770 8150 1.762957 ACACATAGCCCGACTAAGCAT 59.237 47.619 0.00 0.00 33.57 3.79
2771 8151 1.191535 ACACATAGCCCGACTAAGCA 58.808 50.000 0.00 0.00 33.57 3.91
2772 8152 1.933853 CAACACATAGCCCGACTAAGC 59.066 52.381 0.00 0.00 33.57 3.09
2773 8153 2.550978 CCAACACATAGCCCGACTAAG 58.449 52.381 0.00 0.00 33.57 2.18
2774 8154 1.406341 GCCAACACATAGCCCGACTAA 60.406 52.381 0.00 0.00 33.57 2.24
2775 8155 0.177141 GCCAACACATAGCCCGACTA 59.823 55.000 0.00 0.00 34.64 2.59
2776 8156 1.078426 GCCAACACATAGCCCGACT 60.078 57.895 0.00 0.00 0.00 4.18
2777 8157 2.112815 GGCCAACACATAGCCCGAC 61.113 63.158 0.00 0.00 41.00 4.79
2778 8158 1.920734 ATGGCCAACACATAGCCCGA 61.921 55.000 10.96 0.00 46.55 5.14
2779 8159 1.037030 AATGGCCAACACATAGCCCG 61.037 55.000 10.96 0.00 46.55 6.13
2780 8160 1.136891 GAAATGGCCAACACATAGCCC 59.863 52.381 10.96 0.00 46.55 5.19
2781 8161 4.941461 TTGGAAATGGCCAACACATAGCC 61.941 47.826 10.96 3.60 42.75 3.93
2782 8162 1.824230 TGGAAATGGCCAACACATAGC 59.176 47.619 10.96 0.00 34.31 2.97
2783 8163 4.533919 TTTGGAAATGGCCAACACATAG 57.466 40.909 10.96 0.00 46.99 2.23
2784 8164 4.963318 TTTTGGAAATGGCCAACACATA 57.037 36.364 10.96 0.00 46.99 2.29
2785 8165 3.853355 TTTTGGAAATGGCCAACACAT 57.147 38.095 10.96 0.00 46.99 3.21
2786 8166 3.118112 ACATTTTGGAAATGGCCAACACA 60.118 39.130 10.96 3.78 46.99 3.72
2787 8167 3.250521 CACATTTTGGAAATGGCCAACAC 59.749 43.478 10.96 3.38 46.99 3.32
2788 8168 3.118112 ACACATTTTGGAAATGGCCAACA 60.118 39.130 10.96 3.78 46.99 3.33
2789 8169 3.475575 ACACATTTTGGAAATGGCCAAC 58.524 40.909 10.96 4.22 46.99 3.77
2790 8170 3.853355 ACACATTTTGGAAATGGCCAA 57.147 38.095 10.96 0.00 45.77 4.52
2791 8171 3.474600 CAACACATTTTGGAAATGGCCA 58.525 40.909 8.56 8.56 35.78 5.36
2801 8181 7.440856 ACTGTTATAAAAGGCCAACACATTTTG 59.559 33.333 5.01 0.00 0.00 2.44
2802 8182 7.440856 CACTGTTATAAAAGGCCAACACATTTT 59.559 33.333 5.01 4.30 0.00 1.82
2803 8183 6.928492 CACTGTTATAAAAGGCCAACACATTT 59.072 34.615 5.01 0.00 0.00 2.32
2804 8184 6.266558 TCACTGTTATAAAAGGCCAACACATT 59.733 34.615 5.01 0.00 0.00 2.71
2805 8185 5.772672 TCACTGTTATAAAAGGCCAACACAT 59.227 36.000 5.01 0.00 0.00 3.21
2806 8186 5.133941 TCACTGTTATAAAAGGCCAACACA 58.866 37.500 5.01 0.00 0.00 3.72
2807 8187 5.240844 ACTCACTGTTATAAAAGGCCAACAC 59.759 40.000 5.01 0.00 0.00 3.32
2808 8188 5.381757 ACTCACTGTTATAAAAGGCCAACA 58.618 37.500 5.01 4.52 0.00 3.33
2809 8189 5.959618 ACTCACTGTTATAAAAGGCCAAC 57.040 39.130 5.01 0.00 0.00 3.77
2810 8190 6.969993 AAACTCACTGTTATAAAAGGCCAA 57.030 33.333 5.01 0.00 38.03 4.52
2811 8191 8.106247 CTTAAACTCACTGTTATAAAAGGCCA 57.894 34.615 5.01 0.00 38.03 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.