Multiple sequence alignment - TraesCS6D01G124400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G124400 chr6D 100.000 6607 0 0 1 6607 89051912 89058518 0.000000e+00 12201.0
1 TraesCS6D01G124400 chr6D 94.828 116 6 0 150 265 89011980 89012095 1.460000e-41 182.0
2 TraesCS6D01G124400 chr6D 86.087 115 8 2 6358 6472 89058220 89058326 4.190000e-22 117.0
3 TraesCS6D01G124400 chr6D 86.087 115 8 2 6309 6415 89058269 89058383 4.190000e-22 117.0
4 TraesCS6D01G124400 chr6A 95.864 3361 88 14 845 4185 107170883 107174212 0.000000e+00 5389.0
5 TraesCS6D01G124400 chr6A 96.384 2074 39 14 4184 6246 107174293 107176341 0.000000e+00 3382.0
6 TraesCS6D01G124400 chr6A 91.424 583 38 4 149 730 107122466 107123037 0.000000e+00 789.0
7 TraesCS6D01G124400 chr6A 85.764 288 18 12 6105 6373 107176944 107177227 3.900000e-72 283.0
8 TraesCS6D01G124400 chr6A 95.775 142 6 0 6105 6246 107176747 107176888 5.150000e-56 230.0
9 TraesCS6D01G124400 chr6A 81.633 245 31 10 6358 6589 107177163 107177406 2.430000e-44 191.0
10 TraesCS6D01G124400 chr6A 100.000 90 0 0 6105 6194 107176397 107176486 4.100000e-37 167.0
11 TraesCS6D01G124400 chr6A 96.154 52 1 1 770 820 107170840 107170891 4.250000e-12 84.2
12 TraesCS6D01G124400 chr6B 94.539 2417 85 26 3662 6053 169474835 169477229 0.000000e+00 3688.0
13 TraesCS6D01G124400 chr6B 96.165 1982 62 12 845 2819 169472082 169474056 0.000000e+00 3227.0
14 TraesCS6D01G124400 chr6B 96.255 801 20 5 2840 3631 169474039 169474838 0.000000e+00 1304.0
15 TraesCS6D01G124400 chr6B 84.659 352 33 14 487 823 169471749 169472094 1.370000e-86 331.0
16 TraesCS6D01G124400 chr6B 91.579 95 6 1 6098 6190 169477334 169477428 5.380000e-26 130.0
17 TraesCS6D01G124400 chr7B 91.193 352 14 5 3993 4341 679382845 679383182 4.670000e-126 462.0
18 TraesCS6D01G124400 chr7B 94.286 35 2 0 4243 4277 679383385 679383419 3.000000e-03 54.7
19 TraesCS6D01G124400 chr7D 80.952 210 18 5 6418 6606 591918136 591918344 5.340000e-31 147.0
20 TraesCS6D01G124400 chr7D 91.379 58 5 0 6358 6415 591918133 591918190 5.490000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G124400 chr6D 89051912 89058518 6606 False 4145.000000 12201 90.724667 1 6607 3 chr6D.!!$F2 6606
1 TraesCS6D01G124400 chr6A 107170840 107177406 6566 False 1389.457143 5389 93.082000 770 6589 7 chr6A.!!$F2 5819
2 TraesCS6D01G124400 chr6A 107122466 107123037 571 False 789.000000 789 91.424000 149 730 1 chr6A.!!$F1 581
3 TraesCS6D01G124400 chr6B 169471749 169477428 5679 False 1736.000000 3688 92.639400 487 6190 5 chr6B.!!$F1 5703
4 TraesCS6D01G124400 chr7B 679382845 679383419 574 False 258.350000 462 92.739500 3993 4341 2 chr7B.!!$F1 348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.033504 TCCCACAAGAACAGCGAGAC 59.966 55.000 0.0 0.00 0.00 3.36 F
191 192 0.036388 CCACCACACGCCTCATTACT 60.036 55.000 0.0 0.00 0.00 2.24 F
556 562 0.106708 AAGTTTGCTCCGCTGAGACA 59.893 50.000 9.6 3.92 41.42 3.41 F
1538 1568 0.249031 GAGTTGTTTGCCAGCCACAC 60.249 55.000 0.0 0.00 0.00 3.82 F
2836 2869 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2840 2873 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2848 2881 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2852 2885 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2854 2887 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2856 2889 0.871057 CACACACACACACACACACA 59.129 50.000 0.0 0.00 0.00 3.72 F
2857 2890 1.136000 CACACACACACACACACACAG 60.136 52.381 0.0 0.00 0.00 3.66 F
2895 2928 3.737850 GTTCTGCTTGCTCCTGCTATAT 58.262 45.455 0.0 0.00 40.48 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 1232 0.095417 GCAATCGAACGAACAGGAGC 59.905 55.000 0.12 0.0 0.00 4.70 R
2122 2153 0.615331 TCATTCAGTGGACTCTGCCC 59.385 55.000 0.00 0.0 35.63 5.36 R
2842 2875 0.250234 AGCTCTGTGTGTGTGTGTGT 59.750 50.000 0.00 0.0 0.00 3.72 R
2843 2876 0.654160 CAGCTCTGTGTGTGTGTGTG 59.346 55.000 0.00 0.0 0.00 3.82 R
4937 5165 1.194781 GGACCTGGTCTGCAGAGGAA 61.195 60.000 25.01 9.6 32.47 3.36 R
5025 5253 3.489355 ACACAAAACTGAGATGGCATGA 58.511 40.909 3.81 0.0 0.00 3.07 R
5204 5432 6.231211 TGGAGAATCTTTCACCTGTAAGTTC 58.769 40.000 5.52 0.0 40.56 3.01 R
5390 5618 1.007118 TGGAGGATAGTCACCTGCTCA 59.993 52.381 0.00 0.0 44.33 4.26 R
5450 5679 7.833786 AGAATGTAAATTGAGCAATGTCATGT 58.166 30.769 0.00 0.0 0.00 3.21 R
5464 5693 9.588096 GAAATATAGGTGGGGAGAATGTAAATT 57.412 33.333 0.00 0.0 0.00 1.82 R
5527 5756 0.532640 ACTGTGAGCACGCATGTTCA 60.533 50.000 0.00 0.0 43.08 3.18 R
5824 6063 2.351418 TCAACAAAGTCACAGCTCAACG 59.649 45.455 0.00 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.226717 GATCAGGACGGACGACAGC 60.227 63.158 0.00 0.00 0.00 4.40
19 20 1.658686 GATCAGGACGGACGACAGCT 61.659 60.000 0.00 0.00 0.00 4.24
20 21 1.658686 ATCAGGACGGACGACAGCTC 61.659 60.000 0.00 0.00 0.00 4.09
21 22 2.034376 AGGACGGACGACAGCTCT 59.966 61.111 0.00 0.00 0.00 4.09
22 23 2.041686 AGGACGGACGACAGCTCTC 61.042 63.158 0.00 0.00 0.00 3.20
23 24 2.486042 GACGGACGACAGCTCTCC 59.514 66.667 0.00 0.00 0.00 3.71
24 25 2.034376 ACGGACGACAGCTCTCCT 59.966 61.111 0.00 0.00 0.00 3.69
25 26 1.984321 GACGGACGACAGCTCTCCTC 61.984 65.000 0.00 0.00 0.00 3.71
26 27 1.747367 CGGACGACAGCTCTCCTCT 60.747 63.158 0.00 0.00 0.00 3.69
27 28 1.309499 CGGACGACAGCTCTCCTCTT 61.309 60.000 0.00 0.00 0.00 2.85
28 29 0.892063 GGACGACAGCTCTCCTCTTT 59.108 55.000 0.00 0.00 0.00 2.52
29 30 1.135228 GGACGACAGCTCTCCTCTTTC 60.135 57.143 0.00 0.00 0.00 2.62
30 31 0.892063 ACGACAGCTCTCCTCTTTCC 59.108 55.000 0.00 0.00 0.00 3.13
31 32 0.174617 CGACAGCTCTCCTCTTTCCC 59.825 60.000 0.00 0.00 0.00 3.97
32 33 0.539518 GACAGCTCTCCTCTTTCCCC 59.460 60.000 0.00 0.00 0.00 4.81
33 34 0.118144 ACAGCTCTCCTCTTTCCCCT 59.882 55.000 0.00 0.00 0.00 4.79
34 35 1.284313 CAGCTCTCCTCTTTCCCCTT 58.716 55.000 0.00 0.00 0.00 3.95
35 36 1.632920 CAGCTCTCCTCTTTCCCCTTT 59.367 52.381 0.00 0.00 0.00 3.11
36 37 1.912731 AGCTCTCCTCTTTCCCCTTTC 59.087 52.381 0.00 0.00 0.00 2.62
37 38 1.912731 GCTCTCCTCTTTCCCCTTTCT 59.087 52.381 0.00 0.00 0.00 2.52
38 39 2.093181 GCTCTCCTCTTTCCCCTTTCTC 60.093 54.545 0.00 0.00 0.00 2.87
39 40 2.503765 CTCTCCTCTTTCCCCTTTCTCC 59.496 54.545 0.00 0.00 0.00 3.71
40 41 2.114506 TCTCCTCTTTCCCCTTTCTCCT 59.885 50.000 0.00 0.00 0.00 3.69
41 42 2.916269 CTCCTCTTTCCCCTTTCTCCTT 59.084 50.000 0.00 0.00 0.00 3.36
42 43 2.913617 TCCTCTTTCCCCTTTCTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
43 44 2.025793 CCTCTTTCCCCTTTCTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
44 45 1.993301 TCTTTCCCCTTTCTCCTTCCC 59.007 52.381 0.00 0.00 0.00 3.97
45 46 1.006043 CTTTCCCCTTTCTCCTTCCCC 59.994 57.143 0.00 0.00 0.00 4.81
46 47 1.205460 TTCCCCTTTCTCCTTCCCCG 61.205 60.000 0.00 0.00 0.00 5.73
47 48 2.272471 CCCTTTCTCCTTCCCCGC 59.728 66.667 0.00 0.00 0.00 6.13
48 49 2.272471 CCTTTCTCCTTCCCCGCC 59.728 66.667 0.00 0.00 0.00 6.13
49 50 2.301738 CCTTTCTCCTTCCCCGCCT 61.302 63.158 0.00 0.00 0.00 5.52
50 51 0.981277 CCTTTCTCCTTCCCCGCCTA 60.981 60.000 0.00 0.00 0.00 3.93
51 52 0.178301 CTTTCTCCTTCCCCGCCTAC 59.822 60.000 0.00 0.00 0.00 3.18
52 53 0.252558 TTTCTCCTTCCCCGCCTACT 60.253 55.000 0.00 0.00 0.00 2.57
53 54 0.252558 TTCTCCTTCCCCGCCTACTT 60.253 55.000 0.00 0.00 0.00 2.24
54 55 0.252558 TCTCCTTCCCCGCCTACTTT 60.253 55.000 0.00 0.00 0.00 2.66
55 56 0.178301 CTCCTTCCCCGCCTACTTTC 59.822 60.000 0.00 0.00 0.00 2.62
56 57 1.223763 CCTTCCCCGCCTACTTTCC 59.776 63.158 0.00 0.00 0.00 3.13
57 58 1.272554 CCTTCCCCGCCTACTTTCCT 61.273 60.000 0.00 0.00 0.00 3.36
58 59 0.618981 CTTCCCCGCCTACTTTCCTT 59.381 55.000 0.00 0.00 0.00 3.36
59 60 1.004394 CTTCCCCGCCTACTTTCCTTT 59.996 52.381 0.00 0.00 0.00 3.11
60 61 0.616891 TCCCCGCCTACTTTCCTTTC 59.383 55.000 0.00 0.00 0.00 2.62
61 62 0.618981 CCCCGCCTACTTTCCTTTCT 59.381 55.000 0.00 0.00 0.00 2.52
62 63 1.004394 CCCCGCCTACTTTCCTTTCTT 59.996 52.381 0.00 0.00 0.00 2.52
63 64 2.357075 CCCGCCTACTTTCCTTTCTTC 58.643 52.381 0.00 0.00 0.00 2.87
64 65 2.027100 CCCGCCTACTTTCCTTTCTTCT 60.027 50.000 0.00 0.00 0.00 2.85
65 66 3.263261 CCGCCTACTTTCCTTTCTTCTC 58.737 50.000 0.00 0.00 0.00 2.87
66 67 3.263261 CGCCTACTTTCCTTTCTTCTCC 58.737 50.000 0.00 0.00 0.00 3.71
67 68 3.611970 GCCTACTTTCCTTTCTTCTCCC 58.388 50.000 0.00 0.00 0.00 4.30
68 69 3.009143 GCCTACTTTCCTTTCTTCTCCCA 59.991 47.826 0.00 0.00 0.00 4.37
69 70 4.580868 CCTACTTTCCTTTCTTCTCCCAC 58.419 47.826 0.00 0.00 0.00 4.61
70 71 4.041691 CCTACTTTCCTTTCTTCTCCCACA 59.958 45.833 0.00 0.00 0.00 4.17
71 72 4.519906 ACTTTCCTTTCTTCTCCCACAA 57.480 40.909 0.00 0.00 0.00 3.33
72 73 4.464947 ACTTTCCTTTCTTCTCCCACAAG 58.535 43.478 0.00 0.00 0.00 3.16
73 74 4.166144 ACTTTCCTTTCTTCTCCCACAAGA 59.834 41.667 0.00 0.00 0.00 3.02
74 75 4.788925 TTCCTTTCTTCTCCCACAAGAA 57.211 40.909 0.00 0.00 37.96 2.52
75 76 4.086706 TCCTTTCTTCTCCCACAAGAAC 57.913 45.455 0.00 0.00 39.15 3.01
76 77 3.458118 TCCTTTCTTCTCCCACAAGAACA 59.542 43.478 0.00 0.00 39.15 3.18
77 78 3.817647 CCTTTCTTCTCCCACAAGAACAG 59.182 47.826 0.00 0.00 39.15 3.16
78 79 2.550830 TCTTCTCCCACAAGAACAGC 57.449 50.000 0.00 0.00 32.03 4.40
79 80 1.151668 CTTCTCCCACAAGAACAGCG 58.848 55.000 0.00 0.00 32.03 5.18
80 81 0.756294 TTCTCCCACAAGAACAGCGA 59.244 50.000 0.00 0.00 30.38 4.93
81 82 0.318441 TCTCCCACAAGAACAGCGAG 59.682 55.000 0.00 0.00 0.00 5.03
82 83 0.318441 CTCCCACAAGAACAGCGAGA 59.682 55.000 0.00 0.00 0.00 4.04
83 84 0.033504 TCCCACAAGAACAGCGAGAC 59.966 55.000 0.00 0.00 0.00 3.36
84 85 0.249868 CCCACAAGAACAGCGAGACA 60.250 55.000 0.00 0.00 0.00 3.41
85 86 1.143305 CCACAAGAACAGCGAGACAG 58.857 55.000 0.00 0.00 0.00 3.51
86 87 1.269778 CCACAAGAACAGCGAGACAGA 60.270 52.381 0.00 0.00 0.00 3.41
87 88 2.611473 CCACAAGAACAGCGAGACAGAT 60.611 50.000 0.00 0.00 0.00 2.90
88 89 3.062763 CACAAGAACAGCGAGACAGATT 58.937 45.455 0.00 0.00 0.00 2.40
89 90 3.062763 ACAAGAACAGCGAGACAGATTG 58.937 45.455 0.00 0.00 0.00 2.67
90 91 3.062763 CAAGAACAGCGAGACAGATTGT 58.937 45.455 0.00 0.00 0.00 2.71
91 92 4.237724 CAAGAACAGCGAGACAGATTGTA 58.762 43.478 0.00 0.00 0.00 2.41
92 93 4.521130 AGAACAGCGAGACAGATTGTAA 57.479 40.909 0.00 0.00 0.00 2.41
93 94 4.238514 AGAACAGCGAGACAGATTGTAAC 58.761 43.478 0.00 0.00 0.00 2.50
94 95 3.944055 ACAGCGAGACAGATTGTAACT 57.056 42.857 0.00 0.00 0.00 2.24
95 96 3.839293 ACAGCGAGACAGATTGTAACTC 58.161 45.455 0.00 0.00 0.00 3.01
96 97 2.848887 CAGCGAGACAGATTGTAACTCG 59.151 50.000 12.98 12.98 43.34 4.18
97 98 2.747989 AGCGAGACAGATTGTAACTCGA 59.252 45.455 18.54 0.00 43.23 4.04
98 99 3.190744 AGCGAGACAGATTGTAACTCGAA 59.809 43.478 18.54 0.00 43.23 3.71
99 100 4.106197 GCGAGACAGATTGTAACTCGAAT 58.894 43.478 18.54 0.00 43.23 3.34
100 101 4.563184 GCGAGACAGATTGTAACTCGAATT 59.437 41.667 18.54 0.00 43.23 2.17
101 102 5.275974 GCGAGACAGATTGTAACTCGAATTC 60.276 44.000 18.54 0.00 43.23 2.17
102 103 5.052960 CGAGACAGATTGTAACTCGAATTCG 60.053 44.000 21.78 21.78 43.23 3.34
103 104 7.158969 CGAGACAGATTGTAACTCGAATTCGA 61.159 42.308 27.54 27.54 43.23 3.71
114 115 2.727777 TCGAATTCGAGGCTTGTATCG 58.272 47.619 25.96 15.48 44.22 2.92
115 116 2.098607 TCGAATTCGAGGCTTGTATCGT 59.901 45.455 25.96 0.00 44.22 3.73
116 117 2.216488 CGAATTCGAGGCTTGTATCGTG 59.784 50.000 23.29 0.00 43.02 4.35
117 118 3.444916 GAATTCGAGGCTTGTATCGTGA 58.555 45.455 0.77 0.00 39.86 4.35
118 119 2.561733 TTCGAGGCTTGTATCGTGAG 57.438 50.000 0.77 0.00 39.86 3.51
119 120 1.460504 TCGAGGCTTGTATCGTGAGT 58.539 50.000 0.77 0.00 39.86 3.41
120 121 2.635714 TCGAGGCTTGTATCGTGAGTA 58.364 47.619 0.77 0.00 39.86 2.59
121 122 3.011818 TCGAGGCTTGTATCGTGAGTAA 58.988 45.455 0.77 0.00 39.86 2.24
122 123 3.064958 TCGAGGCTTGTATCGTGAGTAAG 59.935 47.826 0.77 0.00 39.86 2.34
123 124 3.181499 CGAGGCTTGTATCGTGAGTAAGT 60.181 47.826 0.00 0.00 34.30 2.24
124 125 4.106197 GAGGCTTGTATCGTGAGTAAGTG 58.894 47.826 0.00 0.00 0.00 3.16
125 126 3.762288 AGGCTTGTATCGTGAGTAAGTGA 59.238 43.478 0.00 0.00 0.00 3.41
126 127 4.402793 AGGCTTGTATCGTGAGTAAGTGAT 59.597 41.667 0.00 0.00 0.00 3.06
127 128 5.593095 AGGCTTGTATCGTGAGTAAGTGATA 59.407 40.000 0.00 0.00 0.00 2.15
128 129 5.915758 GGCTTGTATCGTGAGTAAGTGATAG 59.084 44.000 0.00 0.00 0.00 2.08
129 130 6.238676 GGCTTGTATCGTGAGTAAGTGATAGA 60.239 42.308 0.00 0.00 0.00 1.98
130 131 7.364200 GCTTGTATCGTGAGTAAGTGATAGAT 58.636 38.462 0.00 0.00 0.00 1.98
131 132 7.535940 GCTTGTATCGTGAGTAAGTGATAGATC 59.464 40.741 0.00 0.00 0.00 2.75
132 133 7.118422 TGTATCGTGAGTAAGTGATAGATCG 57.882 40.000 0.00 0.00 0.00 3.69
133 134 5.614923 ATCGTGAGTAAGTGATAGATCGG 57.385 43.478 0.00 0.00 0.00 4.18
134 135 4.449131 TCGTGAGTAAGTGATAGATCGGT 58.551 43.478 0.00 0.00 0.00 4.69
135 136 4.510711 TCGTGAGTAAGTGATAGATCGGTC 59.489 45.833 0.00 0.00 0.00 4.79
136 137 4.512198 CGTGAGTAAGTGATAGATCGGTCT 59.488 45.833 2.49 2.49 38.52 3.85
137 138 5.559225 CGTGAGTAAGTGATAGATCGGTCTG 60.559 48.000 8.91 0.00 35.87 3.51
138 139 4.822350 TGAGTAAGTGATAGATCGGTCTGG 59.178 45.833 8.91 0.00 35.87 3.86
139 140 4.794334 AGTAAGTGATAGATCGGTCTGGT 58.206 43.478 8.91 0.00 35.87 4.00
140 141 5.938279 AGTAAGTGATAGATCGGTCTGGTA 58.062 41.667 8.91 0.00 35.87 3.25
141 142 5.764192 AGTAAGTGATAGATCGGTCTGGTAC 59.236 44.000 8.91 4.24 35.87 3.34
142 143 3.488363 AGTGATAGATCGGTCTGGTACC 58.512 50.000 8.91 4.43 45.77 3.34
155 156 5.930135 GGTCTGGTACCTAACATTGATGAT 58.070 41.667 14.36 0.00 45.75 2.45
174 175 3.332187 TGATGTGGAATAAAGTGTCCCCA 59.668 43.478 0.00 0.00 32.48 4.96
176 177 2.224917 TGTGGAATAAAGTGTCCCCACC 60.225 50.000 0.00 0.00 42.88 4.61
177 178 2.066592 TGGAATAAAGTGTCCCCACCA 58.933 47.619 0.00 0.00 42.88 4.17
191 192 0.036388 CCACCACACGCCTCATTACT 60.036 55.000 0.00 0.00 0.00 2.24
223 224 1.015109 GTATCTCGAGAGGCGTGTGA 58.985 55.000 21.52 0.00 41.80 3.58
234 235 3.128349 GAGGCGTGTGAGTTTGTTTCTA 58.872 45.455 0.00 0.00 0.00 2.10
240 241 5.277345 GCGTGTGAGTTTGTTTCTATTGTCT 60.277 40.000 0.00 0.00 0.00 3.41
242 243 5.909610 GTGTGAGTTTGTTTCTATTGTCTGC 59.090 40.000 0.00 0.00 0.00 4.26
252 253 3.531538 TCTATTGTCTGCGGATTTGTCC 58.468 45.455 0.00 0.00 0.00 4.02
269 270 2.976185 TGTCCTGGTGATGTTGTTCCTA 59.024 45.455 0.00 0.00 0.00 2.94
275 276 2.095853 GGTGATGTTGTTCCTATGTGCG 59.904 50.000 0.00 0.00 0.00 5.34
293 294 1.827315 CGAACAACGCGGATGTGTGT 61.827 55.000 18.57 5.31 39.20 3.72
314 315 3.034635 TCTTAGTCATCCAGCTCCCTTC 58.965 50.000 0.00 0.00 0.00 3.46
339 340 3.692424 ACGAAGTTTAAGCACCCGT 57.308 47.368 0.00 0.00 37.78 5.28
371 372 2.096218 GGAGCGTGTGAGATTTTGTGTC 60.096 50.000 0.00 0.00 0.00 3.67
379 380 2.711009 TGAGATTTTGTGTCCCCTGACT 59.289 45.455 0.00 0.00 42.28 3.41
393 394 1.025812 CTGACTCCGTCTAGCCGAAT 58.974 55.000 0.00 0.00 33.15 3.34
424 425 2.170012 TATAGGGCCTCTCCAACGTT 57.830 50.000 10.74 0.00 36.21 3.99
436 437 6.627508 GCCTCTCCAACGTTTTCTTATCTAGA 60.628 42.308 0.00 0.00 0.00 2.43
441 442 7.439381 TCCAACGTTTTCTTATCTAGAGTTGT 58.561 34.615 0.00 0.00 35.30 3.32
462 463 6.330004 TGTGATTGTTGTGATTTGCTACAT 57.670 33.333 0.00 0.00 0.00 2.29
465 466 7.807433 TGTGATTGTTGTGATTTGCTACATAAC 59.193 33.333 0.00 0.00 38.15 1.89
478 479 2.779755 ACATAACTGATGGCCGTTGA 57.220 45.000 0.00 0.00 40.18 3.18
556 562 0.106708 AAGTTTGCTCCGCTGAGACA 59.893 50.000 9.60 3.92 41.42 3.41
647 668 5.245075 CACCCCAAGACTTAATGCCTTTTTA 59.755 40.000 0.00 0.00 0.00 1.52
648 669 6.022958 ACCCCAAGACTTAATGCCTTTTTAT 58.977 36.000 0.00 0.00 0.00 1.40
649 670 6.500400 ACCCCAAGACTTAATGCCTTTTTATT 59.500 34.615 0.00 0.00 0.00 1.40
650 671 7.017155 ACCCCAAGACTTAATGCCTTTTTATTT 59.983 33.333 0.00 0.00 0.00 1.40
651 672 8.536175 CCCCAAGACTTAATGCCTTTTTATTTA 58.464 33.333 0.00 0.00 0.00 1.40
883 904 1.001764 CCATCTCCTGGCAAGTGCA 60.002 57.895 5.52 0.00 44.36 4.57
1051 1078 1.301716 AAGACCAAGATGTGCGCGT 60.302 52.632 8.43 0.00 0.00 6.01
1176 1203 3.946907 GGTACGTATGCGCATCCC 58.053 61.111 29.11 17.62 42.83 3.85
1215 1243 2.034879 CATTGCCGCTCCTGTTCGT 61.035 57.895 0.00 0.00 0.00 3.85
1228 1256 2.411547 CCTGTTCGTTCGATTGCTGTTC 60.412 50.000 0.00 0.00 0.00 3.18
1267 1296 1.612462 CGGGGTTTAGGGTTTCTGTCC 60.612 57.143 0.00 0.00 0.00 4.02
1299 1328 1.682344 GGAGGGTTGGATGTTGCCC 60.682 63.158 0.00 0.00 41.36 5.36
1379 1409 4.156455 TGAATGTTGAGGAATCTAGGGC 57.844 45.455 0.00 0.00 0.00 5.19
1419 1449 3.966979 TGGCTGAATGCTGGAAAGATTA 58.033 40.909 0.00 0.00 42.39 1.75
1432 1462 6.152638 TGGAAAGATTAGGTTTTGGATCCT 57.847 37.500 14.23 0.00 37.80 3.24
1507 1537 2.963782 ACGGTTACCTCTGAAGAACACT 59.036 45.455 0.00 0.00 0.00 3.55
1515 1545 1.143305 CTGAAGAACACTGCGGTCAG 58.857 55.000 0.00 0.00 45.71 3.51
1538 1568 0.249031 GAGTTGTTTGCCAGCCACAC 60.249 55.000 0.00 0.00 0.00 3.82
1542 1572 1.106351 TGTTTGCCAGCCACACGAAT 61.106 50.000 0.00 0.00 0.00 3.34
1557 1587 6.205784 CCACACGAATGACAAGTTACAAATT 58.794 36.000 0.00 0.00 0.00 1.82
1689 1719 3.980775 CGATTGACGTTTTTGGAGCATTT 59.019 39.130 0.00 0.00 37.22 2.32
1791 1822 2.061028 GTTGTGGCTTATTGTGCTTGC 58.939 47.619 0.00 0.00 0.00 4.01
1811 1842 7.024768 GCTTGCGTGGTTTACTATAATTTTCA 58.975 34.615 0.00 0.00 0.00 2.69
1988 2019 3.633986 CAGAGGATAACATGGCCTTTTCC 59.366 47.826 3.32 4.39 30.70 3.13
2012 2043 9.627123 TCCATAGATTTCTTCGATTGGTATTTT 57.373 29.630 0.00 0.00 0.00 1.82
2096 2127 1.027357 CCTCCTTTGATTGATGCCCG 58.973 55.000 0.00 0.00 0.00 6.13
2592 2625 5.920273 CGCTCCATTTTACTTTGTTGACATT 59.080 36.000 0.00 0.00 0.00 2.71
2595 2628 7.062255 GCTCCATTTTACTTTGTTGACATTAGC 59.938 37.037 0.00 0.00 0.00 3.09
2836 2869 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2837 2870 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2838 2871 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2839 2872 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2840 2873 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2841 2874 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2842 2875 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2843 2876 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2844 2877 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2845 2878 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2846 2879 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2847 2880 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2848 2881 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2849 2882 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2850 2883 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2851 2884 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2852 2885 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2853 2886 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2854 2887 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2855 2888 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2856 2889 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2857 2890 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2895 2928 3.737850 GTTCTGCTTGCTCCTGCTATAT 58.262 45.455 0.00 0.00 40.48 0.86
2986 3019 5.101648 TGCAGTTCAACATATGATCCTCA 57.898 39.130 10.38 0.00 38.03 3.86
3380 3421 6.621514 AGGATTATGAAAAGGAGGTATGAGGT 59.378 38.462 0.00 0.00 0.00 3.85
3645 3688 8.165239 CTTGTTGGCAAGGCTATATTTATGTA 57.835 34.615 0.00 0.00 46.17 2.29
3713 3757 7.436080 GCTAGTAAATGTTAGCGTACCATGTTA 59.564 37.037 0.00 0.00 33.68 2.41
3714 3758 9.472361 CTAGTAAATGTTAGCGTACCATGTTAT 57.528 33.333 0.00 0.00 0.00 1.89
3715 3759 8.726870 AGTAAATGTTAGCGTACCATGTTATT 57.273 30.769 0.00 0.00 0.00 1.40
3716 3760 9.820725 AGTAAATGTTAGCGTACCATGTTATTA 57.179 29.630 0.00 0.00 0.00 0.98
3720 3764 9.997482 AATGTTAGCGTACCATGTTATTAAAAG 57.003 29.630 0.00 0.00 0.00 2.27
3721 3765 8.774890 TGTTAGCGTACCATGTTATTAAAAGA 57.225 30.769 0.00 0.00 0.00 2.52
3722 3766 9.217278 TGTTAGCGTACCATGTTATTAAAAGAA 57.783 29.630 0.00 0.00 0.00 2.52
4522 4685 6.145696 GGATCTCGTACATATTTTTCCTTCCG 59.854 42.308 0.00 0.00 0.00 4.30
4563 4726 9.742144 TGTTTAAGCAACCCATCTTATTAAGTA 57.258 29.630 3.45 0.00 33.97 2.24
4564 4727 9.999009 GTTTAAGCAACCCATCTTATTAAGTAC 57.001 33.333 3.45 0.00 0.00 2.73
4565 4728 9.969001 TTTAAGCAACCCATCTTATTAAGTACT 57.031 29.630 3.45 0.00 0.00 2.73
4566 4729 7.865706 AAGCAACCCATCTTATTAAGTACTG 57.134 36.000 0.00 1.29 0.00 2.74
4567 4730 6.958767 AGCAACCCATCTTATTAAGTACTGT 58.041 36.000 0.00 0.00 0.00 3.55
4832 5060 6.809196 CAGATAAATATAGGTCAGAAGGCGAC 59.191 42.308 0.00 0.00 0.00 5.19
4937 5165 4.021916 AGAATAAGCTTGGAAATGCTGCT 58.978 39.130 9.86 0.00 39.71 4.24
4995 5223 8.200792 TGCCATCTTAGTTTTGTGTTAAATGTT 58.799 29.630 0.00 0.00 0.00 2.71
5025 5253 5.016173 TGATTGCTGGCTTGTTTATTACCT 58.984 37.500 0.00 0.00 0.00 3.08
5111 5339 6.014840 ACGAGTGAACCTCATAGTTTTCCTTA 60.015 38.462 0.00 0.00 40.48 2.69
5527 5756 7.941238 AGAATAGTTATTGGCTTGCATATGACT 59.059 33.333 6.97 0.00 0.00 3.41
5926 6166 3.057019 TCTTCGATTTTGTCAGTGACGG 58.943 45.455 18.17 3.80 34.95 4.79
5949 6189 3.386726 TGCCGTGCACTAGGTATTTCTAT 59.613 43.478 16.19 0.00 31.71 1.98
5980 6220 0.698238 AAGCCAATCAGCCCAGTACA 59.302 50.000 0.00 0.00 0.00 2.90
6085 6359 2.241160 TGTCTCACCATGCAGCAATTT 58.759 42.857 0.00 0.00 0.00 1.82
6195 7239 7.353497 TCGAAATAAAACACAATAAGAACGCA 58.647 30.769 0.00 0.00 0.00 5.24
6239 7283 1.079819 CCGACACCGCATCTCTTGT 60.080 57.895 0.00 0.00 0.00 3.16
6240 7284 1.354337 CCGACACCGCATCTCTTGTG 61.354 60.000 0.00 0.00 35.52 3.33
6241 7285 0.667487 CGACACCGCATCTCTTGTGT 60.667 55.000 0.00 0.00 44.12 3.72
6242 7286 3.217242 ACACCGCATCTCTTGTGTC 57.783 52.632 0.00 0.00 37.37 3.67
6243 7287 0.667487 ACACCGCATCTCTTGTGTCG 60.667 55.000 0.00 0.00 37.37 4.35
6244 7288 1.738099 ACCGCATCTCTTGTGTCGC 60.738 57.895 0.00 0.00 33.82 5.19
6245 7289 2.691522 CGCATCTCTTGTGTCGCG 59.308 61.111 0.00 0.00 36.47 5.87
6246 7290 2.792290 CGCATCTCTTGTGTCGCGG 61.792 63.158 6.13 0.00 39.09 6.46
6247 7291 2.456119 GCATCTCTTGTGTCGCGGG 61.456 63.158 6.13 0.00 0.00 6.13
6248 7292 2.125512 ATCTCTTGTGTCGCGGGC 60.126 61.111 6.13 0.00 0.00 6.13
6249 7293 2.650116 ATCTCTTGTGTCGCGGGCT 61.650 57.895 6.13 0.00 0.00 5.19
6321 7390 2.464459 CGAGACCCGCTTCCATTGC 61.464 63.158 0.00 0.00 0.00 3.56
6322 7391 2.044946 AGACCCGCTTCCATTGCC 60.045 61.111 0.00 0.00 0.00 4.52
6340 7409 0.378962 CCGACAGTTGGCAAAACGAA 59.621 50.000 0.00 0.00 0.00 3.85
6374 7443 4.785453 CCCGCTTCCCCTGCTGAC 62.785 72.222 0.00 0.00 0.00 3.51
6375 7444 4.020617 CCGCTTCCCCTGCTGACA 62.021 66.667 0.00 0.00 0.00 3.58
6376 7445 2.435586 CGCTTCCCCTGCTGACAG 60.436 66.667 0.00 0.00 44.05 3.51
6377 7446 2.753029 GCTTCCCCTGCTGACAGT 59.247 61.111 3.99 0.00 42.81 3.55
6378 7447 1.073897 GCTTCCCCTGCTGACAGTT 59.926 57.895 3.99 0.00 42.81 3.16
6379 7448 1.239968 GCTTCCCCTGCTGACAGTTG 61.240 60.000 3.99 0.00 42.81 3.16
6380 7449 0.607489 CTTCCCCTGCTGACAGTTGG 60.607 60.000 3.99 6.61 42.81 3.77
6381 7450 2.674380 CCCCTGCTGACAGTTGGC 60.674 66.667 3.99 0.00 42.81 4.52
6382 7451 2.113774 CCCTGCTGACAGTTGGCA 59.886 61.111 3.99 0.00 42.81 4.92
6383 7452 1.529010 CCCTGCTGACAGTTGGCAA 60.529 57.895 3.99 0.00 42.81 4.52
6384 7453 1.108727 CCCTGCTGACAGTTGGCAAA 61.109 55.000 0.00 0.00 42.81 3.68
6385 7454 0.746063 CCTGCTGACAGTTGGCAAAA 59.254 50.000 0.00 0.00 42.81 2.44
6386 7455 1.536709 CCTGCTGACAGTTGGCAAAAC 60.537 52.381 0.00 0.00 42.81 2.43
6387 7456 0.100325 TGCTGACAGTTGGCAAAACG 59.900 50.000 0.00 0.00 32.79 3.60
6388 7457 0.380378 GCTGACAGTTGGCAAAACGA 59.620 50.000 0.00 0.00 29.15 3.85
6389 7458 1.202245 GCTGACAGTTGGCAAAACGAA 60.202 47.619 0.00 0.00 29.15 3.85
6390 7459 2.543653 GCTGACAGTTGGCAAAACGAAT 60.544 45.455 0.00 0.00 29.15 3.34
6391 7460 3.300009 CTGACAGTTGGCAAAACGAATC 58.700 45.455 0.00 0.00 29.15 2.52
6392 7461 2.948979 TGACAGTTGGCAAAACGAATCT 59.051 40.909 0.00 0.00 0.00 2.40
6393 7462 3.003275 TGACAGTTGGCAAAACGAATCTC 59.997 43.478 0.00 0.00 0.00 2.75
6394 7463 2.948979 ACAGTTGGCAAAACGAATCTCA 59.051 40.909 0.00 0.00 0.00 3.27
6395 7464 3.380004 ACAGTTGGCAAAACGAATCTCAA 59.620 39.130 0.00 0.00 0.00 3.02
6396 7465 4.142271 ACAGTTGGCAAAACGAATCTCAAA 60.142 37.500 0.00 0.00 0.00 2.69
6397 7466 4.442073 CAGTTGGCAAAACGAATCTCAAAG 59.558 41.667 0.00 0.00 0.00 2.77
6398 7467 3.011949 TGGCAAAACGAATCTCAAAGC 57.988 42.857 0.00 0.00 0.00 3.51
6399 7468 2.360483 TGGCAAAACGAATCTCAAAGCA 59.640 40.909 0.00 0.00 0.00 3.91
6400 7469 2.726241 GGCAAAACGAATCTCAAAGCAC 59.274 45.455 0.00 0.00 0.00 4.40
6401 7470 2.726241 GCAAAACGAATCTCAAAGCACC 59.274 45.455 0.00 0.00 0.00 5.01
6402 7471 3.308530 CAAAACGAATCTCAAAGCACCC 58.691 45.455 0.00 0.00 0.00 4.61
6403 7472 2.568623 AACGAATCTCAAAGCACCCT 57.431 45.000 0.00 0.00 0.00 4.34
6404 7473 2.568623 ACGAATCTCAAAGCACCCTT 57.431 45.000 0.00 0.00 0.00 3.95
6405 7474 2.427506 ACGAATCTCAAAGCACCCTTC 58.572 47.619 0.00 0.00 0.00 3.46
6406 7475 1.740025 CGAATCTCAAAGCACCCTTCC 59.260 52.381 0.00 0.00 0.00 3.46
6407 7476 2.095461 GAATCTCAAAGCACCCTTCCC 58.905 52.381 0.00 0.00 0.00 3.97
6408 7477 0.035056 ATCTCAAAGCACCCTTCCCG 60.035 55.000 0.00 0.00 0.00 5.14
6409 7478 1.073199 CTCAAAGCACCCTTCCCGT 59.927 57.895 0.00 0.00 0.00 5.28
6410 7479 0.537371 CTCAAAGCACCCTTCCCGTT 60.537 55.000 0.00 0.00 0.00 4.44
6411 7480 0.536460 TCAAAGCACCCTTCCCGTTC 60.536 55.000 0.00 0.00 0.00 3.95
6412 7481 1.228459 AAAGCACCCTTCCCGTTCC 60.228 57.895 0.00 0.00 0.00 3.62
6413 7482 1.716028 AAAGCACCCTTCCCGTTCCT 61.716 55.000 0.00 0.00 0.00 3.36
6414 7483 1.716028 AAGCACCCTTCCCGTTCCTT 61.716 55.000 0.00 0.00 0.00 3.36
6415 7484 0.838987 AGCACCCTTCCCGTTCCTTA 60.839 55.000 0.00 0.00 0.00 2.69
6416 7485 0.037160 GCACCCTTCCCGTTCCTTAA 59.963 55.000 0.00 0.00 0.00 1.85
6428 7497 1.004862 GTTCCTTAAGCTTCCCCTGCT 59.995 52.381 0.00 0.00 43.32 4.24
6431 7500 1.680249 CCTTAAGCTTCCCCTGCTGAC 60.680 57.143 0.00 0.00 41.03 3.51
6436 7505 0.957888 GCTTCCCCTGCTGACAGTTC 60.958 60.000 3.99 0.00 42.81 3.01
6443 7512 1.267806 CCTGCTGACAGTTCGCAAAAT 59.732 47.619 3.99 0.00 42.81 1.82
6475 7544 0.778083 ACCCTTCCCCTTTCTTCCAC 59.222 55.000 0.00 0.00 0.00 4.02
6482 7551 1.608283 CCCCTTTCTTCCACGTCTGAC 60.608 57.143 0.00 0.00 0.00 3.51
6486 7573 2.417339 TTCTTCCACGTCTGACTTCG 57.583 50.000 6.21 0.00 0.00 3.79
6522 7609 3.239861 GCAGCTAGCTTCACCAAGT 57.760 52.632 16.46 0.00 41.15 3.16
6523 7610 2.386661 GCAGCTAGCTTCACCAAGTA 57.613 50.000 16.46 0.00 41.15 2.24
6525 7612 2.275318 CAGCTAGCTTCACCAAGTAGC 58.725 52.381 16.46 0.00 40.59 3.58
6526 7613 1.902508 AGCTAGCTTCACCAAGTAGCA 59.097 47.619 12.68 0.00 42.51 3.49
6529 7616 0.764890 AGCTTCACCAAGTAGCACCA 59.235 50.000 0.00 0.00 42.51 4.17
6530 7617 1.142870 AGCTTCACCAAGTAGCACCAA 59.857 47.619 0.00 0.00 42.51 3.67
6531 7618 1.266989 GCTTCACCAAGTAGCACCAAC 59.733 52.381 0.00 0.00 40.08 3.77
6532 7619 2.571212 CTTCACCAAGTAGCACCAACA 58.429 47.619 0.00 0.00 0.00 3.33
6533 7620 2.254546 TCACCAAGTAGCACCAACAG 57.745 50.000 0.00 0.00 0.00 3.16
6534 7621 1.202758 TCACCAAGTAGCACCAACAGG 60.203 52.381 0.00 0.00 0.00 4.00
6535 7622 1.136828 ACCAAGTAGCACCAACAGGA 58.863 50.000 0.00 0.00 0.00 3.86
6536 7623 1.072331 ACCAAGTAGCACCAACAGGAG 59.928 52.381 0.00 0.00 0.00 3.69
6537 7624 1.611673 CCAAGTAGCACCAACAGGAGG 60.612 57.143 0.00 0.00 0.00 4.30
6538 7625 0.036875 AAGTAGCACCAACAGGAGGC 59.963 55.000 0.00 0.00 0.00 4.70
6539 7626 1.741770 GTAGCACCAACAGGAGGCG 60.742 63.158 0.00 0.00 33.56 5.52
6540 7627 1.911269 TAGCACCAACAGGAGGCGA 60.911 57.895 0.00 0.00 33.56 5.54
6551 7638 0.976641 AGGAGGCGAAACACATCAGA 59.023 50.000 0.00 0.00 0.00 3.27
6555 7642 1.089920 GGCGAAACACATCAGAGCAT 58.910 50.000 0.00 0.00 0.00 3.79
6574 7661 0.392461 TTCCCTTGCTGCATCCGTAC 60.392 55.000 1.84 0.00 0.00 3.67
6582 7669 2.585247 GCATCCGTACGCCCTGAC 60.585 66.667 10.49 0.15 0.00 3.51
6589 7676 1.384989 CGTACGCCCTGACATCTCCT 61.385 60.000 0.52 0.00 0.00 3.69
6590 7677 0.386113 GTACGCCCTGACATCTCCTC 59.614 60.000 0.00 0.00 0.00 3.71
6591 7678 0.755698 TACGCCCTGACATCTCCTCC 60.756 60.000 0.00 0.00 0.00 4.30
6592 7679 2.801631 CGCCCTGACATCTCCTCCC 61.802 68.421 0.00 0.00 0.00 4.30
6593 7680 1.690633 GCCCTGACATCTCCTCCCA 60.691 63.158 0.00 0.00 0.00 4.37
6594 7681 1.059006 GCCCTGACATCTCCTCCCAT 61.059 60.000 0.00 0.00 0.00 4.00
6595 7682 0.763652 CCCTGACATCTCCTCCCATG 59.236 60.000 0.00 0.00 0.00 3.66
6596 7683 1.504912 CCTGACATCTCCTCCCATGT 58.495 55.000 0.00 0.00 35.88 3.21
6597 7684 1.415659 CCTGACATCTCCTCCCATGTC 59.584 57.143 5.30 5.30 46.26 3.06
6598 7685 3.976339 GACATCTCCTCCCATGTCG 57.024 57.895 0.00 0.00 39.58 4.35
6599 7686 0.249657 GACATCTCCTCCCATGTCGC 60.250 60.000 0.00 0.00 39.58 5.19
6600 7687 1.070445 CATCTCCTCCCATGTCGCC 59.930 63.158 0.00 0.00 0.00 5.54
6601 7688 2.143419 ATCTCCTCCCATGTCGCCC 61.143 63.158 0.00 0.00 0.00 6.13
6602 7689 3.866582 CTCCTCCCATGTCGCCCC 61.867 72.222 0.00 0.00 0.00 5.80
6605 7692 3.411517 CTCCCATGTCGCCCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
6606 7693 2.938798 TCCCATGTCGCCCCCTTT 60.939 61.111 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.226717 GCTGTCGTCCGTCCTGATC 60.227 63.158 0.00 0.00 0.00 2.92
1 2 1.658686 GAGCTGTCGTCCGTCCTGAT 61.659 60.000 0.00 0.00 0.00 2.90
2 3 2.282251 AGCTGTCGTCCGTCCTGA 60.282 61.111 0.00 0.00 0.00 3.86
3 4 2.179517 GAGCTGTCGTCCGTCCTG 59.820 66.667 0.00 0.00 0.00 3.86
4 5 2.034376 AGAGCTGTCGTCCGTCCT 59.966 61.111 0.00 0.00 0.00 3.85
5 6 2.486042 GAGAGCTGTCGTCCGTCC 59.514 66.667 0.00 0.00 0.00 4.79
6 7 1.984321 GAGGAGAGCTGTCGTCCGTC 61.984 65.000 19.81 0.00 35.33 4.79
7 8 2.034376 AGGAGAGCTGTCGTCCGT 59.966 61.111 4.57 0.00 35.33 4.69
8 9 1.309499 AAGAGGAGAGCTGTCGTCCG 61.309 60.000 24.94 0.00 35.33 4.79
9 10 0.892063 AAAGAGGAGAGCTGTCGTCC 59.108 55.000 24.94 10.67 32.75 4.79
10 11 1.135228 GGAAAGAGGAGAGCTGTCGTC 60.135 57.143 22.18 22.18 0.00 4.20
11 12 0.892063 GGAAAGAGGAGAGCTGTCGT 59.108 55.000 5.67 5.67 0.00 4.34
12 13 0.174617 GGGAAAGAGGAGAGCTGTCG 59.825 60.000 4.57 0.00 0.00 4.35
13 14 0.539518 GGGGAAAGAGGAGAGCTGTC 59.460 60.000 1.31 1.31 0.00 3.51
14 15 0.118144 AGGGGAAAGAGGAGAGCTGT 59.882 55.000 0.00 0.00 0.00 4.40
15 16 1.284313 AAGGGGAAAGAGGAGAGCTG 58.716 55.000 0.00 0.00 0.00 4.24
16 17 1.912731 GAAAGGGGAAAGAGGAGAGCT 59.087 52.381 0.00 0.00 0.00 4.09
17 18 1.912731 AGAAAGGGGAAAGAGGAGAGC 59.087 52.381 0.00 0.00 0.00 4.09
18 19 2.503765 GGAGAAAGGGGAAAGAGGAGAG 59.496 54.545 0.00 0.00 0.00 3.20
19 20 2.114506 AGGAGAAAGGGGAAAGAGGAGA 59.885 50.000 0.00 0.00 0.00 3.71
20 21 2.556766 AGGAGAAAGGGGAAAGAGGAG 58.443 52.381 0.00 0.00 0.00 3.69
21 22 2.743131 AGGAGAAAGGGGAAAGAGGA 57.257 50.000 0.00 0.00 0.00 3.71
22 23 2.025793 GGAAGGAGAAAGGGGAAAGAGG 60.026 54.545 0.00 0.00 0.00 3.69
23 24 2.025793 GGGAAGGAGAAAGGGGAAAGAG 60.026 54.545 0.00 0.00 0.00 2.85
24 25 1.993301 GGGAAGGAGAAAGGGGAAAGA 59.007 52.381 0.00 0.00 0.00 2.52
25 26 1.006043 GGGGAAGGAGAAAGGGGAAAG 59.994 57.143 0.00 0.00 0.00 2.62
26 27 1.081481 GGGGAAGGAGAAAGGGGAAA 58.919 55.000 0.00 0.00 0.00 3.13
27 28 1.205460 CGGGGAAGGAGAAAGGGGAA 61.205 60.000 0.00 0.00 0.00 3.97
28 29 1.615424 CGGGGAAGGAGAAAGGGGA 60.615 63.158 0.00 0.00 0.00 4.81
29 30 2.998949 CGGGGAAGGAGAAAGGGG 59.001 66.667 0.00 0.00 0.00 4.79
30 31 2.272471 GCGGGGAAGGAGAAAGGG 59.728 66.667 0.00 0.00 0.00 3.95
31 32 0.981277 TAGGCGGGGAAGGAGAAAGG 60.981 60.000 0.00 0.00 0.00 3.11
32 33 0.178301 GTAGGCGGGGAAGGAGAAAG 59.822 60.000 0.00 0.00 0.00 2.62
33 34 0.252558 AGTAGGCGGGGAAGGAGAAA 60.253 55.000 0.00 0.00 0.00 2.52
34 35 0.252558 AAGTAGGCGGGGAAGGAGAA 60.253 55.000 0.00 0.00 0.00 2.87
35 36 0.252558 AAAGTAGGCGGGGAAGGAGA 60.253 55.000 0.00 0.00 0.00 3.71
36 37 0.178301 GAAAGTAGGCGGGGAAGGAG 59.822 60.000 0.00 0.00 0.00 3.69
37 38 1.269703 GGAAAGTAGGCGGGGAAGGA 61.270 60.000 0.00 0.00 0.00 3.36
38 39 1.223763 GGAAAGTAGGCGGGGAAGG 59.776 63.158 0.00 0.00 0.00 3.46
39 40 0.618981 AAGGAAAGTAGGCGGGGAAG 59.381 55.000 0.00 0.00 0.00 3.46
40 41 1.003928 GAAAGGAAAGTAGGCGGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
41 42 0.616891 GAAAGGAAAGTAGGCGGGGA 59.383 55.000 0.00 0.00 0.00 4.81
42 43 0.618981 AGAAAGGAAAGTAGGCGGGG 59.381 55.000 0.00 0.00 0.00 5.73
43 44 2.027100 AGAAGAAAGGAAAGTAGGCGGG 60.027 50.000 0.00 0.00 0.00 6.13
44 45 3.263261 GAGAAGAAAGGAAAGTAGGCGG 58.737 50.000 0.00 0.00 0.00 6.13
45 46 3.263261 GGAGAAGAAAGGAAAGTAGGCG 58.737 50.000 0.00 0.00 0.00 5.52
46 47 3.009143 TGGGAGAAGAAAGGAAAGTAGGC 59.991 47.826 0.00 0.00 0.00 3.93
47 48 4.041691 TGTGGGAGAAGAAAGGAAAGTAGG 59.958 45.833 0.00 0.00 0.00 3.18
48 49 5.228945 TGTGGGAGAAGAAAGGAAAGTAG 57.771 43.478 0.00 0.00 0.00 2.57
49 50 5.368523 TCTTGTGGGAGAAGAAAGGAAAGTA 59.631 40.000 0.00 0.00 0.00 2.24
50 51 4.166144 TCTTGTGGGAGAAGAAAGGAAAGT 59.834 41.667 0.00 0.00 0.00 2.66
51 52 4.718961 TCTTGTGGGAGAAGAAAGGAAAG 58.281 43.478 0.00 0.00 0.00 2.62
52 53 4.788925 TCTTGTGGGAGAAGAAAGGAAA 57.211 40.909 0.00 0.00 0.00 3.13
53 54 4.080015 TGTTCTTGTGGGAGAAGAAAGGAA 60.080 41.667 0.00 0.00 40.30 3.36
54 55 3.458118 TGTTCTTGTGGGAGAAGAAAGGA 59.542 43.478 0.00 0.00 40.30 3.36
55 56 3.817647 CTGTTCTTGTGGGAGAAGAAAGG 59.182 47.826 0.00 0.00 40.30 3.11
56 57 3.251972 GCTGTTCTTGTGGGAGAAGAAAG 59.748 47.826 0.00 0.00 40.30 2.62
57 58 3.214328 GCTGTTCTTGTGGGAGAAGAAA 58.786 45.455 0.00 0.00 40.30 2.52
58 59 2.806745 CGCTGTTCTTGTGGGAGAAGAA 60.807 50.000 0.00 0.00 36.39 2.52
59 60 1.270305 CGCTGTTCTTGTGGGAGAAGA 60.270 52.381 0.00 0.00 36.39 2.87
60 61 1.151668 CGCTGTTCTTGTGGGAGAAG 58.848 55.000 0.00 0.00 36.39 2.85
61 62 0.756294 TCGCTGTTCTTGTGGGAGAA 59.244 50.000 0.00 0.00 33.44 2.87
62 63 0.318441 CTCGCTGTTCTTGTGGGAGA 59.682 55.000 0.00 0.00 41.37 3.71
63 64 0.318441 TCTCGCTGTTCTTGTGGGAG 59.682 55.000 0.00 0.00 40.59 4.30
64 65 0.033504 GTCTCGCTGTTCTTGTGGGA 59.966 55.000 0.00 0.00 0.00 4.37
65 66 0.249868 TGTCTCGCTGTTCTTGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
66 67 1.143305 CTGTCTCGCTGTTCTTGTGG 58.857 55.000 0.00 0.00 0.00 4.17
67 68 2.140065 TCTGTCTCGCTGTTCTTGTG 57.860 50.000 0.00 0.00 0.00 3.33
68 69 3.062763 CAATCTGTCTCGCTGTTCTTGT 58.937 45.455 0.00 0.00 0.00 3.16
69 70 3.062763 ACAATCTGTCTCGCTGTTCTTG 58.937 45.455 0.00 0.00 0.00 3.02
70 71 3.393089 ACAATCTGTCTCGCTGTTCTT 57.607 42.857 0.00 0.00 0.00 2.52
71 72 4.021894 AGTTACAATCTGTCTCGCTGTTCT 60.022 41.667 0.00 0.00 0.00 3.01
72 73 4.238514 AGTTACAATCTGTCTCGCTGTTC 58.761 43.478 0.00 0.00 0.00 3.18
73 74 4.238514 GAGTTACAATCTGTCTCGCTGTT 58.761 43.478 0.00 0.00 0.00 3.16
74 75 3.670895 CGAGTTACAATCTGTCTCGCTGT 60.671 47.826 5.35 0.00 37.71 4.40
75 76 2.848887 CGAGTTACAATCTGTCTCGCTG 59.151 50.000 5.35 0.00 37.71 5.18
76 77 2.747989 TCGAGTTACAATCTGTCTCGCT 59.252 45.455 11.12 0.00 41.53 4.93
77 78 3.132629 TCGAGTTACAATCTGTCTCGC 57.867 47.619 11.12 0.00 41.53 5.03
78 79 5.052960 CGAATTCGAGTTACAATCTGTCTCG 60.053 44.000 23.29 10.15 42.47 4.04
79 80 6.028368 TCGAATTCGAGTTACAATCTGTCTC 58.972 40.000 25.96 0.00 44.22 3.36
80 81 5.950883 TCGAATTCGAGTTACAATCTGTCT 58.049 37.500 25.96 0.00 44.22 3.41
95 96 2.216488 CACGATACAAGCCTCGAATTCG 59.784 50.000 21.78 21.78 38.24 3.34
96 97 3.444916 TCACGATACAAGCCTCGAATTC 58.555 45.455 0.00 0.00 38.24 2.17
97 98 3.119101 ACTCACGATACAAGCCTCGAATT 60.119 43.478 0.00 0.00 38.24 2.17
98 99 2.427453 ACTCACGATACAAGCCTCGAAT 59.573 45.455 0.00 0.00 38.24 3.34
99 100 1.816835 ACTCACGATACAAGCCTCGAA 59.183 47.619 0.00 0.00 38.24 3.71
100 101 1.460504 ACTCACGATACAAGCCTCGA 58.539 50.000 0.00 0.00 38.24 4.04
101 102 3.181499 ACTTACTCACGATACAAGCCTCG 60.181 47.826 0.00 0.00 40.62 4.63
102 103 4.106197 CACTTACTCACGATACAAGCCTC 58.894 47.826 0.00 0.00 0.00 4.70
103 104 3.762288 TCACTTACTCACGATACAAGCCT 59.238 43.478 0.00 0.00 0.00 4.58
104 105 4.106029 TCACTTACTCACGATACAAGCC 57.894 45.455 0.00 0.00 0.00 4.35
105 106 6.726230 TCTATCACTTACTCACGATACAAGC 58.274 40.000 0.00 0.00 0.00 4.01
106 107 7.742525 CGATCTATCACTTACTCACGATACAAG 59.257 40.741 0.00 0.00 0.00 3.16
107 108 7.307811 CCGATCTATCACTTACTCACGATACAA 60.308 40.741 0.00 0.00 0.00 2.41
108 109 6.147328 CCGATCTATCACTTACTCACGATACA 59.853 42.308 0.00 0.00 0.00 2.29
109 110 6.147492 ACCGATCTATCACTTACTCACGATAC 59.853 42.308 0.00 0.00 0.00 2.24
110 111 6.228995 ACCGATCTATCACTTACTCACGATA 58.771 40.000 0.00 0.00 0.00 2.92
111 112 5.064558 ACCGATCTATCACTTACTCACGAT 58.935 41.667 0.00 0.00 0.00 3.73
112 113 4.449131 ACCGATCTATCACTTACTCACGA 58.551 43.478 0.00 0.00 0.00 4.35
113 114 4.512198 AGACCGATCTATCACTTACTCACG 59.488 45.833 0.00 0.00 31.46 4.35
114 115 5.278071 CCAGACCGATCTATCACTTACTCAC 60.278 48.000 0.00 0.00 32.25 3.51
115 116 4.822350 CCAGACCGATCTATCACTTACTCA 59.178 45.833 0.00 0.00 32.25 3.41
116 117 4.822896 ACCAGACCGATCTATCACTTACTC 59.177 45.833 0.00 0.00 32.25 2.59
117 118 4.794334 ACCAGACCGATCTATCACTTACT 58.206 43.478 0.00 0.00 32.25 2.24
118 119 5.048852 GGTACCAGACCGATCTATCACTTAC 60.049 48.000 7.15 0.00 38.87 2.34
119 120 5.068636 GGTACCAGACCGATCTATCACTTA 58.931 45.833 7.15 0.00 38.87 2.24
120 121 3.890147 GGTACCAGACCGATCTATCACTT 59.110 47.826 7.15 0.00 38.87 3.16
121 122 3.488363 GGTACCAGACCGATCTATCACT 58.512 50.000 7.15 0.00 38.87 3.41
122 123 3.919223 GGTACCAGACCGATCTATCAC 57.081 52.381 7.15 0.00 38.87 3.06
132 133 6.632672 ACATCATCAATGTTAGGTACCAGACC 60.633 42.308 15.94 0.00 46.73 3.85
133 134 6.258727 CACATCATCAATGTTAGGTACCAGAC 59.741 42.308 15.94 12.42 46.73 3.51
134 135 6.348498 CACATCATCAATGTTAGGTACCAGA 58.652 40.000 15.94 0.00 46.73 3.86
135 136 5.528690 CCACATCATCAATGTTAGGTACCAG 59.471 44.000 15.94 0.00 46.73 4.00
136 137 5.190726 TCCACATCATCAATGTTAGGTACCA 59.809 40.000 15.94 0.00 46.73 3.25
137 138 5.680619 TCCACATCATCAATGTTAGGTACC 58.319 41.667 2.73 2.73 46.73 3.34
138 139 7.807977 ATTCCACATCATCAATGTTAGGTAC 57.192 36.000 0.00 0.00 46.73 3.34
139 140 9.913310 TTTATTCCACATCATCAATGTTAGGTA 57.087 29.630 0.00 0.00 46.73 3.08
140 141 8.821686 TTTATTCCACATCATCAATGTTAGGT 57.178 30.769 0.00 0.00 46.73 3.08
141 142 8.906867 ACTTTATTCCACATCATCAATGTTAGG 58.093 33.333 0.00 0.00 46.73 2.69
142 143 9.726232 CACTTTATTCCACATCATCAATGTTAG 57.274 33.333 0.00 0.00 46.73 2.34
143 144 9.241919 ACACTTTATTCCACATCATCAATGTTA 57.758 29.630 0.00 0.00 46.73 2.41
144 145 8.125978 ACACTTTATTCCACATCATCAATGTT 57.874 30.769 0.00 0.00 46.73 2.71
146 147 7.198390 GGACACTTTATTCCACATCATCAATG 58.802 38.462 0.00 0.00 41.48 2.82
147 148 6.322201 GGGACACTTTATTCCACATCATCAAT 59.678 38.462 0.00 0.00 33.01 2.57
174 175 2.500098 ACATAGTAATGAGGCGTGTGGT 59.500 45.455 0.00 0.00 36.54 4.16
176 177 2.285220 GCACATAGTAATGAGGCGTGTG 59.715 50.000 0.00 0.00 38.69 3.82
177 178 2.168521 AGCACATAGTAATGAGGCGTGT 59.831 45.455 0.00 0.00 39.90 4.49
183 184 7.649705 AGATACGAACAAGCACATAGTAATGAG 59.350 37.037 0.00 0.00 36.54 2.90
212 213 1.940613 GAAACAAACTCACACGCCTCT 59.059 47.619 0.00 0.00 0.00 3.69
223 224 4.385825 TCCGCAGACAATAGAAACAAACT 58.614 39.130 0.00 0.00 0.00 2.66
252 253 3.127548 GCACATAGGAACAACATCACCAG 59.872 47.826 0.00 0.00 0.00 4.00
275 276 0.110823 GACACACATCCGCGTTGTTC 60.111 55.000 4.92 0.00 0.00 3.18
283 284 3.448686 GGATGACTAAGACACACATCCG 58.551 50.000 0.00 0.00 44.39 4.18
293 294 2.856760 AGGGAGCTGGATGACTAAGA 57.143 50.000 0.00 0.00 0.00 2.10
314 315 1.868498 TGCTTAAACTTCGTCGGTTGG 59.132 47.619 0.00 0.00 0.00 3.77
339 340 3.884774 ACGCTCCCCAACAAGGCA 61.885 61.111 0.00 0.00 35.39 4.75
379 380 2.292569 GACACATATTCGGCTAGACGGA 59.707 50.000 19.96 10.82 0.00 4.69
393 394 4.652421 AGAGGCCCTATAAAACGACACATA 59.348 41.667 0.00 0.00 0.00 2.29
424 425 9.778741 ACAACAATCACAACTCTAGATAAGAAA 57.221 29.630 0.00 0.00 32.46 2.52
436 437 5.266733 AGCAAATCACAACAATCACAACT 57.733 34.783 0.00 0.00 0.00 3.16
441 442 8.022550 CAGTTATGTAGCAAATCACAACAATCA 58.977 33.333 0.00 0.00 0.00 2.57
462 463 0.319083 ACGTCAACGGCCATCAGTTA 59.681 50.000 2.24 0.00 44.95 2.24
465 466 3.474806 GACGTCAACGGCCATCAG 58.525 61.111 11.55 0.00 42.67 2.90
478 479 7.108847 AGTAGTTAATGTAGACCAGTAGACGT 58.891 38.462 0.00 0.00 0.00 4.34
556 562 3.390521 TGGCGCATTCGGGTCTCT 61.391 61.111 10.83 0.00 35.95 3.10
901 922 2.042843 GGGAGGAGGAGCGGAGAA 60.043 66.667 0.00 0.00 0.00 2.87
1051 1078 1.453015 AGTTGCCGTTCTGCCACAA 60.453 52.632 0.00 0.00 29.75 3.33
1172 1199 4.173701 GGGACGGGGAGAGGGGAT 62.174 72.222 0.00 0.00 0.00 3.85
1204 1232 0.095417 GCAATCGAACGAACAGGAGC 59.905 55.000 0.12 0.00 0.00 4.70
1215 1243 1.019278 GGCGAGGAACAGCAATCGAA 61.019 55.000 0.00 0.00 37.35 3.71
1267 1296 2.647875 CTCCCCGCATCTCGCTAG 59.352 66.667 0.00 0.00 39.08 3.42
1299 1328 6.976925 GGCTACCATGAAAATCAAGAGAATTG 59.023 38.462 0.00 0.00 0.00 2.32
1379 1409 0.757188 ATCTCTGGCGGTACTCCCTG 60.757 60.000 0.00 0.00 27.74 4.45
1419 1449 5.264395 CATTCTTGGTAGGATCCAAAACCT 58.736 41.667 23.72 7.73 45.26 3.50
1432 1462 1.355971 GCGAACGAGCATTCTTGGTA 58.644 50.000 0.00 0.00 37.05 3.25
1507 1537 2.805671 CAAACAACTCATACTGACCGCA 59.194 45.455 0.00 0.00 0.00 5.69
1515 1545 1.885887 TGGCTGGCAAACAACTCATAC 59.114 47.619 0.00 0.00 0.00 2.39
1557 1587 9.965824 GATCTCCTCAAGAAACAAAAATTAACA 57.034 29.630 0.00 0.00 37.61 2.41
1568 1598 3.003480 CAACCGGATCTCCTCAAGAAAC 58.997 50.000 9.46 0.00 37.61 2.78
1667 1697 2.679355 TGCTCCAAAAACGTCAATCG 57.321 45.000 0.00 0.00 46.00 3.34
1689 1719 9.391006 ACATAATGTCGCCTAGAAAATAGAAAA 57.609 29.630 0.00 0.00 0.00 2.29
1711 1741 9.409312 CAAGCACAAAAATATCTTGTCAACATA 57.591 29.630 1.17 0.00 34.80 2.29
1811 1842 7.201679 GCTGATGTTCAATTCAAGCAGTAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
2012 2043 3.401033 AGTGGTCACGACAAATCATCA 57.599 42.857 0.00 0.00 36.20 3.07
2122 2153 0.615331 TCATTCAGTGGACTCTGCCC 59.385 55.000 0.00 0.00 35.63 5.36
2836 2869 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2837 2870 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2838 2871 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2839 2872 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
2840 2873 1.725641 CTCTGTGTGTGTGTGTGTGT 58.274 50.000 0.00 0.00 0.00 3.72
2841 2874 0.374758 GCTCTGTGTGTGTGTGTGTG 59.625 55.000 0.00 0.00 0.00 3.82
2842 2875 0.250234 AGCTCTGTGTGTGTGTGTGT 59.750 50.000 0.00 0.00 0.00 3.72
2843 2876 0.654160 CAGCTCTGTGTGTGTGTGTG 59.346 55.000 0.00 0.00 0.00 3.82
2844 2877 0.250234 ACAGCTCTGTGTGTGTGTGT 59.750 50.000 1.15 0.00 43.11 3.72
2845 2878 1.328680 GAACAGCTCTGTGTGTGTGTG 59.671 52.381 2.97 0.00 44.13 3.82
2846 2879 1.066215 TGAACAGCTCTGTGTGTGTGT 60.066 47.619 2.97 0.00 44.13 3.72
2847 2880 1.328680 GTGAACAGCTCTGTGTGTGTG 59.671 52.381 2.97 0.00 44.13 3.82
2848 2881 1.208052 AGTGAACAGCTCTGTGTGTGT 59.792 47.619 2.97 0.00 44.13 3.72
2849 2882 1.945387 AGTGAACAGCTCTGTGTGTG 58.055 50.000 2.97 0.00 44.13 3.82
2850 2883 2.169352 AGAAGTGAACAGCTCTGTGTGT 59.831 45.455 2.97 0.00 44.13 3.72
2851 2884 2.831333 AGAAGTGAACAGCTCTGTGTG 58.169 47.619 2.97 0.00 44.13 3.82
2852 2885 3.551046 CGTAGAAGTGAACAGCTCTGTGT 60.551 47.826 2.97 0.00 44.13 3.72
2853 2886 2.983136 CGTAGAAGTGAACAGCTCTGTG 59.017 50.000 2.97 0.00 44.13 3.66
2855 2888 3.290308 ACGTAGAAGTGAACAGCTCTG 57.710 47.619 0.00 0.00 0.00 3.35
2856 2889 3.570550 AGAACGTAGAAGTGAACAGCTCT 59.429 43.478 0.00 0.00 0.00 4.09
2857 2890 3.670991 CAGAACGTAGAAGTGAACAGCTC 59.329 47.826 0.00 0.00 0.00 4.09
2895 2928 8.654230 TGCAAGCAAAATTACAAATAAGAACA 57.346 26.923 0.00 0.00 0.00 3.18
3073 3107 9.060347 ACAAATCATAGTTATCTGCTATGTTGG 57.940 33.333 10.79 6.44 43.62 3.77
3380 3421 4.460263 ACTGGATTACACAGTGCTCAAAA 58.540 39.130 0.00 0.00 46.67 2.44
3478 3520 9.605275 CTCCATATCTGATCTAACTTGTTTCAA 57.395 33.333 0.00 0.00 0.00 2.69
3577 3620 4.380843 AACACATACATTTCTGGGTGGA 57.619 40.909 0.00 0.00 31.38 4.02
3645 3688 9.607333 TGATATTCTGGACATTAATAGTCTCCT 57.393 33.333 13.91 0.00 36.29 3.69
3680 3724 9.028185 GTACGCTAACATTTACTAGCTATGTTT 57.972 33.333 15.12 2.80 41.36 2.83
4146 4223 4.361451 AGCAAGCCAAGAATGTATTTCG 57.639 40.909 0.00 0.00 39.46 3.46
4522 4685 8.798153 GTTGCTTAAACATGTTAAGATGCATAC 58.202 33.333 21.73 18.00 38.75 2.39
4565 4728 9.754382 CGGAACCTTTAGCTATTACTTAATACA 57.246 33.333 0.00 0.00 0.00 2.29
4566 4729 9.971922 TCGGAACCTTTAGCTATTACTTAATAC 57.028 33.333 0.00 0.00 0.00 1.89
4567 4730 9.971922 GTCGGAACCTTTAGCTATTACTTAATA 57.028 33.333 0.00 0.00 0.00 0.98
4574 4737 7.592885 ACATAGTCGGAACCTTTAGCTATTA 57.407 36.000 0.00 0.00 0.00 0.98
4937 5165 1.194781 GGACCTGGTCTGCAGAGGAA 61.195 60.000 25.01 9.60 32.47 3.36
4995 5223 4.071961 ACAAGCCAGCAATCACGATATA 57.928 40.909 0.00 0.00 0.00 0.86
5025 5253 3.489355 ACACAAAACTGAGATGGCATGA 58.511 40.909 3.81 0.00 0.00 3.07
5204 5432 6.231211 TGGAGAATCTTTCACCTGTAAGTTC 58.769 40.000 5.52 0.00 40.56 3.01
5390 5618 1.007118 TGGAGGATAGTCACCTGCTCA 59.993 52.381 0.00 0.00 44.33 4.26
5450 5679 7.833786 AGAATGTAAATTGAGCAATGTCATGT 58.166 30.769 0.00 0.00 0.00 3.21
5464 5693 9.588096 GAAATATAGGTGGGGAGAATGTAAATT 57.412 33.333 0.00 0.00 0.00 1.82
5527 5756 0.532640 ACTGTGAGCACGCATGTTCA 60.533 50.000 0.00 0.00 43.08 3.18
5824 6063 2.351418 TCAACAAAGTCACAGCTCAACG 59.649 45.455 0.00 0.00 0.00 4.10
5866 6105 5.407387 TCACGAAAATAAGTTAGCTCCACAC 59.593 40.000 0.00 0.00 0.00 3.82
5867 6106 5.543714 TCACGAAAATAAGTTAGCTCCACA 58.456 37.500 0.00 0.00 0.00 4.17
5941 6181 7.795047 TGGCTTGAGAGATGACAATAGAAATA 58.205 34.615 0.00 0.00 0.00 1.40
5949 6189 4.259356 CTGATTGGCTTGAGAGATGACAA 58.741 43.478 0.00 0.00 0.00 3.18
5980 6220 7.599245 GCGCTATAGAAAATACATTAGTCACCT 59.401 37.037 3.21 0.00 0.00 4.00
6224 7268 0.667487 CGACACAAGAGATGCGGTGT 60.667 55.000 0.00 0.00 46.31 4.16
6228 7272 2.691522 CGCGACACAAGAGATGCG 59.308 61.111 0.00 0.00 39.57 4.73
6248 7292 4.803426 GAGGAGGGCACGCGACAG 62.803 72.222 15.93 2.87 0.00 3.51
6321 7390 0.378962 TTCGTTTTGCCAACTGTCGG 59.621 50.000 0.00 0.00 0.00 4.79
6322 7391 2.032030 AGATTCGTTTTGCCAACTGTCG 60.032 45.455 0.00 0.00 0.00 4.35
6340 7409 0.332972 GGGGAAGGGTGCTTTGAGAT 59.667 55.000 0.00 0.00 0.00 2.75
6372 7441 3.003275 TGAGATTCGTTTTGCCAACTGTC 59.997 43.478 0.00 0.00 0.00 3.51
6373 7442 2.948979 TGAGATTCGTTTTGCCAACTGT 59.051 40.909 0.00 0.00 0.00 3.55
6374 7443 3.624326 TGAGATTCGTTTTGCCAACTG 57.376 42.857 0.00 0.00 0.00 3.16
6375 7444 4.610945 CTTTGAGATTCGTTTTGCCAACT 58.389 39.130 0.00 0.00 0.00 3.16
6376 7445 3.182372 GCTTTGAGATTCGTTTTGCCAAC 59.818 43.478 0.00 0.00 0.00 3.77
6377 7446 3.181482 TGCTTTGAGATTCGTTTTGCCAA 60.181 39.130 0.00 0.00 0.00 4.52
6378 7447 2.360483 TGCTTTGAGATTCGTTTTGCCA 59.640 40.909 0.00 0.00 0.00 4.92
6379 7448 2.726241 GTGCTTTGAGATTCGTTTTGCC 59.274 45.455 0.00 0.00 0.00 4.52
6380 7449 2.726241 GGTGCTTTGAGATTCGTTTTGC 59.274 45.455 0.00 0.00 0.00 3.68
6381 7450 3.004734 AGGGTGCTTTGAGATTCGTTTTG 59.995 43.478 0.00 0.00 0.00 2.44
6382 7451 3.222603 AGGGTGCTTTGAGATTCGTTTT 58.777 40.909 0.00 0.00 0.00 2.43
6383 7452 2.863809 AGGGTGCTTTGAGATTCGTTT 58.136 42.857 0.00 0.00 0.00 3.60
6384 7453 2.568623 AGGGTGCTTTGAGATTCGTT 57.431 45.000 0.00 0.00 0.00 3.85
6385 7454 2.427506 GAAGGGTGCTTTGAGATTCGT 58.572 47.619 0.00 0.00 0.00 3.85
6386 7455 1.740025 GGAAGGGTGCTTTGAGATTCG 59.260 52.381 0.00 0.00 0.00 3.34
6387 7456 2.095461 GGGAAGGGTGCTTTGAGATTC 58.905 52.381 0.00 0.00 0.00 2.52
6388 7457 1.614317 CGGGAAGGGTGCTTTGAGATT 60.614 52.381 0.00 0.00 0.00 2.40
6389 7458 0.035056 CGGGAAGGGTGCTTTGAGAT 60.035 55.000 0.00 0.00 0.00 2.75
6390 7459 1.374947 CGGGAAGGGTGCTTTGAGA 59.625 57.895 0.00 0.00 0.00 3.27
6391 7460 0.537371 AACGGGAAGGGTGCTTTGAG 60.537 55.000 0.00 0.00 0.00 3.02
6392 7461 0.536460 GAACGGGAAGGGTGCTTTGA 60.536 55.000 0.00 0.00 0.00 2.69
6393 7462 1.524008 GGAACGGGAAGGGTGCTTTG 61.524 60.000 0.00 0.00 0.00 2.77
6394 7463 1.228459 GGAACGGGAAGGGTGCTTT 60.228 57.895 0.00 0.00 0.00 3.51
6395 7464 1.716028 AAGGAACGGGAAGGGTGCTT 61.716 55.000 0.00 0.00 0.00 3.91
6396 7465 0.838987 TAAGGAACGGGAAGGGTGCT 60.839 55.000 0.00 0.00 0.00 4.40
6397 7466 0.037160 TTAAGGAACGGGAAGGGTGC 59.963 55.000 0.00 0.00 0.00 5.01
6398 7467 1.949079 GCTTAAGGAACGGGAAGGGTG 60.949 57.143 4.29 0.00 0.00 4.61
6399 7468 0.327259 GCTTAAGGAACGGGAAGGGT 59.673 55.000 4.29 0.00 0.00 4.34
6400 7469 0.618981 AGCTTAAGGAACGGGAAGGG 59.381 55.000 4.29 0.00 0.00 3.95
6401 7470 2.357075 GAAGCTTAAGGAACGGGAAGG 58.643 52.381 0.00 0.00 0.00 3.46
6402 7471 2.357075 GGAAGCTTAAGGAACGGGAAG 58.643 52.381 0.00 0.00 0.00 3.46
6403 7472 1.003928 GGGAAGCTTAAGGAACGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
6404 7473 0.616891 GGGAAGCTTAAGGAACGGGA 59.383 55.000 0.00 0.00 0.00 5.14
6405 7474 0.393944 GGGGAAGCTTAAGGAACGGG 60.394 60.000 0.00 0.00 0.00 5.28
6406 7475 0.618981 AGGGGAAGCTTAAGGAACGG 59.381 55.000 0.00 0.00 0.00 4.44
6407 7476 1.739067 CAGGGGAAGCTTAAGGAACG 58.261 55.000 0.00 0.00 0.00 3.95
6408 7477 1.004862 AGCAGGGGAAGCTTAAGGAAC 59.995 52.381 0.00 0.00 39.87 3.62
6409 7478 1.004745 CAGCAGGGGAAGCTTAAGGAA 59.995 52.381 0.00 0.00 41.14 3.36
6410 7479 0.620556 CAGCAGGGGAAGCTTAAGGA 59.379 55.000 0.00 0.00 41.14 3.36
6411 7480 0.620556 TCAGCAGGGGAAGCTTAAGG 59.379 55.000 0.00 0.00 41.14 2.69
6412 7481 1.003580 TGTCAGCAGGGGAAGCTTAAG 59.996 52.381 0.00 0.00 41.14 1.85
6413 7482 1.003580 CTGTCAGCAGGGGAAGCTTAA 59.996 52.381 0.00 0.00 41.14 1.85
6414 7483 0.615331 CTGTCAGCAGGGGAAGCTTA 59.385 55.000 0.00 0.00 41.14 3.09
6415 7484 1.377994 CTGTCAGCAGGGGAAGCTT 59.622 57.895 0.00 0.00 41.14 3.74
6416 7485 1.422161 AACTGTCAGCAGGGGAAGCT 61.422 55.000 0.00 0.00 46.62 3.74
6428 7497 6.552859 TGAGATTTATTTTGCGAACTGTCA 57.447 33.333 0.00 0.00 0.00 3.58
6431 7500 6.363088 TGCTTTGAGATTTATTTTGCGAACTG 59.637 34.615 0.00 0.00 0.00 3.16
6436 7505 4.327087 GGGTGCTTTGAGATTTATTTTGCG 59.673 41.667 0.00 0.00 0.00 4.85
6443 7512 3.563479 GGGGAAGGGTGCTTTGAGATTTA 60.563 47.826 0.00 0.00 0.00 1.40
6475 7544 0.098025 GGAGAGAGCGAAGTCAGACG 59.902 60.000 0.00 0.00 0.00 4.18
6482 7551 0.655733 GACGAGAGGAGAGAGCGAAG 59.344 60.000 0.00 0.00 0.00 3.79
6486 7573 1.772063 GCTCGACGAGAGGAGAGAGC 61.772 65.000 28.43 6.61 46.91 4.09
6521 7608 1.741770 CGCCTCCTGTTGGTGCTAC 60.742 63.158 0.00 0.00 32.69 3.58
6522 7609 1.476845 TTCGCCTCCTGTTGGTGCTA 61.477 55.000 0.00 0.00 35.25 3.49
6523 7610 2.337879 TTTCGCCTCCTGTTGGTGCT 62.338 55.000 0.00 0.00 35.25 4.40
6525 7612 0.817634 TGTTTCGCCTCCTGTTGGTG 60.818 55.000 0.00 0.00 36.49 4.17
6526 7613 0.818040 GTGTTTCGCCTCCTGTTGGT 60.818 55.000 0.00 0.00 34.23 3.67
6529 7616 1.202758 TGATGTGTTTCGCCTCCTGTT 60.203 47.619 0.00 0.00 0.00 3.16
6530 7617 0.396435 TGATGTGTTTCGCCTCCTGT 59.604 50.000 0.00 0.00 0.00 4.00
6531 7618 1.081892 CTGATGTGTTTCGCCTCCTG 58.918 55.000 0.00 0.00 0.00 3.86
6532 7619 0.976641 TCTGATGTGTTTCGCCTCCT 59.023 50.000 0.00 0.00 0.00 3.69
6533 7620 1.363744 CTCTGATGTGTTTCGCCTCC 58.636 55.000 0.00 0.00 0.00 4.30
6534 7621 0.723981 GCTCTGATGTGTTTCGCCTC 59.276 55.000 0.00 0.00 0.00 4.70
6535 7622 0.035317 TGCTCTGATGTGTTTCGCCT 59.965 50.000 0.00 0.00 0.00 5.52
6536 7623 1.089920 ATGCTCTGATGTGTTTCGCC 58.910 50.000 0.00 0.00 0.00 5.54
6537 7624 2.476854 GGAATGCTCTGATGTGTTTCGC 60.477 50.000 0.00 0.00 0.00 4.70
6538 7625 2.096496 GGGAATGCTCTGATGTGTTTCG 59.904 50.000 0.00 0.00 0.00 3.46
6539 7626 3.350833 AGGGAATGCTCTGATGTGTTTC 58.649 45.455 0.00 0.00 0.00 2.78
6540 7627 3.446442 AGGGAATGCTCTGATGTGTTT 57.554 42.857 0.00 0.00 0.00 2.83
6555 7642 0.392461 GTACGGATGCAGCAAGGGAA 60.392 55.000 3.51 0.00 0.00 3.97
6574 7661 2.801631 GGGAGGAGATGTCAGGGCG 61.802 68.421 0.00 0.00 0.00 6.13
6582 7669 1.070445 GGCGACATGGGAGGAGATG 59.930 63.158 0.00 0.00 0.00 2.90
6589 7676 2.938798 AAAGGGGGCGACATGGGA 60.939 61.111 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.